BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1790 (PAB1790) DE:Hypothetical protein
(1144 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75132 hypothetical protein PAB1790 - Pyrococcus abyssi (st... 2357 0.0
pir||D72204 hypothetical protein - Thermotoga maritima (strain M... 192 2e-47
>pir||A75132 hypothetical protein PAB1790 - Pyrococcus abyssi (strain Orsay)
>gi|5458281|emb|CAB49770.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 1144
Score = 2357 bits (6042), Expect = 0.0
Identities = 1144/1144 (100%), Positives = 1144/1144 (100%)
Query: 1 MLSFLCSSCIIISYGDSMKRTVAILMALLLLLTPVKVAARYGTKVIDGNLNDWATSDLVA 60
MLSFLCSSCIIISYGDSMKRTVAILMALLLLLTPVKVAARYGTKVIDGNLNDWATSDLVA
Sbjct: 1 MLSFLCSSCIIISYGDSMKRTVAILMALLLLLTPVKVAARYGTKVIDGNLNDWATSDLVA 60
Query: 61 TGRDSGLQGANLDKLYIAWDDEYLYIAIKTNNTANWKVAYGIGIDVGPGGFTGSESGDSW 120
TGRDSGLQGANLDKLYIAWDDEYLYIAIKTNNTANWKVAYGIGIDVGPGGFTGSESGDSW
Sbjct: 61 TGRDSGLQGANLDKLYIAWDDEYLYIAIKTNNTANWKVAYGIGIDVGPGGFTGSESGDSW 120
Query: 121 GRKINFTREIDYEVYFWWDGKIWSDAFNHWNGTDWEKYSISEIGGEYAYTGDSSSGLQVL 180
GRKINFTREIDYEVYFWWDGKIWSDAFNHWNGTDWEKYSISEIGGEYAYTGDSSSGLQVL
Sbjct: 121 GRKINFTREIDYEVYFWWDGKIWSDAFNHWNGTDWEKYSISEIGGEYAYTGDSSSGLQVL 180
Query: 181 EVAIPWSALGGKPEKIAIITWIAGEEGSSAVDTLPVDPSIDYSNINGEWTDADMLSNFIE 240
EVAIPWSALGGKPEKIAIITWIAGEEGSSAVDTLPVDPSIDYSNINGEWTDADMLSNFIE
Sbjct: 181 EVAIPWSALGGKPEKIAIITWIAGEEGSSAVDTLPVDPSIDYSNINGEWTDADMLSNFIE 240
Query: 241 ISLTKVIDGNLDDWNKAELVAQGVPSGIEGANLDRLYVSWDSNYLYIAIKTNNTAKYWPD 300
ISLTKVIDGNLDDWNKAELVAQGVPSGIEGANLDRLYVSWDSNYLYIAIKTNNTAKYWPD
Sbjct: 241 ISLTKVIDGNLDDWNKAELVAQGVPSGIEGANLDRLYVSWDSNYLYIAIKTNNTAKYWPD 300
Query: 301 YGVAIDVNPGSGIGGTYDPWAKKIYFSGTYLPDYIIYAEAQDGALTWVGLCKWDGNEWIT 360
YGVAIDVNPGSGIGGTYDPWAKKIYFSGTYLPDYIIYAEAQDGALTWVGLCKWDGNEWIT
Sbjct: 301 YGVAIDVNPGSGIGGTYDPWAKKIYFSGTYLPDYIIYAEAQDGALTWVGLCKWDGNEWIT 360
Query: 361 GTNLNSVGEYAYIGGDNGIQTIEIKVPWSALGGMPEKIAIIAWVAGNEDGNSAVDTLPVD 420
GTNLNSVGEYAYIGGDNGIQTIEIKVPWSALGGMPEKIAIIAWVAGNEDGNSAVDTLPVD
Sbjct: 361 GTNLNSVGEYAYIGGDNGIQTIEIKVPWSALGGMPEKIAIIAWVAGNEDGNSAVDTLPVD 420
Query: 421 PSIDYSNINSEWDDEDTLTNFAELEIPKPLPDLAVSITGPSVIPVNKEVEFTITVKNLGA 480
PSIDYSNINSEWDDEDTLTNFAELEIPKPLPDLAVSITGPSVIPVNKEVEFTITVKNLGA
Sbjct: 421 PSIDYSNINSEWDDEDTLTNFAELEIPKPLPDLAVSITGPSVIPVNKEVEFTITVKNLGA 480
Query: 481 VEANDFNVTVYLNNTIVANKTLSLAPKNETSFKVNITVTSEGTYELRAVVDEDNIIRELN 540
VEANDFNVTVYLNNTIVANKTLSLAPKNETSFKVNITVTSEGTYELRAVVDEDNIIRELN
Sbjct: 481 VEANDFNVTVYLNNTIVANKTLSLAPKNETSFKVNITVTSEGTYELRAVVDEDNIIRELN 540
Query: 541 EDNNEASLLIKATWMGKIEVDGNPDDWPKVNVAENSYTVVNGTFIWIDAKGDQRHDKDPY 600
EDNNEASLLIKATWMGKIEVDGNPDDWPKVNVAENSYTVVNGTFIWIDAKGDQRHDKDPY
Sbjct: 541 EDNNEASLLIKATWMGKIEVDGNPDDWPKVNVAENSYTVVNGTFIWIDAKGDQRHDKDPY 600
Query: 601 LPGKSSSHADLVELGVTKDDRYIYFLFVFENMSNIKIGDNGATFIAVPIDYKSGGANWFA 660
LPGKSSSHADLVELGVTKDDRYIYFLFVFENMSNIKIGDNGATFIAVPIDYKSGGANWFA
Sbjct: 601 LPGKSSSHADLVELGVTKDDRYIYFLFVFENMSNIKIGDNGATFIAVPIDYKSGGANWFA 660
Query: 661 GEMDTRTVISWDIQMVVNLGTSDFKGQEYAVSGAGNDVNSILYFLDADGNVISLDALIGV 720
GEMDTRTVISWDIQMVVNLGTSDFKGQEYAVSGAGNDVNSILYFLDADGNVISLDALIGV
Sbjct: 661 GEMDTRTVISWDIQMVVNLGTSDFKGQEYAVSGAGNDVNSILYFLDADGNVISLDALIGV 720
Query: 721 NLSRNTIEVRIPVSALEGAKEFNFQVATGFSYGPAVWNFGDPFNNDKVSDIVDTISLTTT 780
NLSRNTIEVRIPVSALEGAKEFNFQVATGFSYGPAVWNFGDPFNNDKVSDIVDTISLTTT
Sbjct: 721 NLSRNTIEVRIPVSALEGAKEFNFQVATGFSYGPAVWNFGDPFNNDKVSDIVDTISLTTT 780
Query: 781 EEELKDNVPHYYVEITLNSGVESAKLVNYKVLEEERRKREAVNSFITVTRYYGLNVFPRL 840
EEELKDNVPHYYVEITLNSGVESAKLVNYKVLEEERRKREAVNSFITVTRYYGLNVFPRL
Sbjct: 781 EEELKDNVPHYYVEITLNSGVESAKLVNYKVLEEERRKREAVNSFITVTRYYGLNVFPRL 840
Query: 841 KLKFNELIVELSNETLPPALEAKIRDYESQVIELSKLYEEGKDELQRKALISGSVKVYKA 900
KLKFNELIVELSNETLPPALEAKIRDYESQVIELSKLYEEGKDELQRKALISGSVKVYKA
Sbjct: 841 KLKFNELIVELSNETLPPALEAKIRDYESQVIELSKLYEEGKDELQRKALISGSVKVYKA 900
Query: 901 YTRLLRIVREMQMILEKVRSGEISWEKEMEELKSKLGKEIDGDLTDWKVEPIAEDTEGYG 960
YTRLLRIVREMQMILEKVRSGEISWEKEMEELKSKLGKEIDGDLTDWKVEPIAEDTEGYG
Sbjct: 901 YTRLLRIVREMQMILEKVRSGEISWEKEMEELKSKLGKEIDGDLTDWKVEPIAEDTEGYG 960
Query: 961 QDGANIKELYVNYDDNFLYIALVTDNKASWRVAYGIALDYKEGGYISGGDAWGRKIDFAR 1020
QDGANIKELYVNYDDNFLYIALVTDNKASWRVAYGIALDYKEGGYISGGDAWGRKIDFAR
Sbjct: 961 QDGANIKELYVNYDDNFLYIALVTDNKASWRVAYGIALDYKEGGYISGGDAWGRKIDFAR 1020
Query: 1021 GVDAQLYFFWNGEFFGNPGTNNITSAQLILWTGTGWEYKNLDEVGFYAYTGGEEGLKTLE 1080
GVDAQLYFFWNGEFFGNPGTNNITSAQLILWTGTGWEYKNLDEVGFYAYTGGEEGLKTLE
Sbjct: 1021 GVDAQLYFFWNGEFFGNPGTNNITSAQLILWTGTGWEYKNLDEVGFYAYTGGEEGLKTLE 1080
Query: 1081 IAIPWEVLGGKPEKIYVVAYVAGQAPGDSAVDMLPLQDAVKDNEPGSEWGDEDYVTTFAE 1140
IAIPWEVLGGKPEKIYVVAYVAGQAPGDSAVDMLPLQDAVKDNEPGSEWGDEDYVTTFAE
Sbjct: 1081 IAIPWEVLGGKPEKIYVVAYVAGQAPGDSAVDMLPLQDAVKDNEPGSEWGDEDYVTTFAE 1140
Query: 1141 IQIS 1144
IQIS
Sbjct: 1141 IQIS 1144
>pir||D72204 hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982424|gb|AAD36903.1|AE001821_3 (AE001821)
hypothetical protein [Thermotoga maritima]
Length = 443
Score = 192 bits (483), Expect = 2e-47
Identities = 99/198 (50%), Positives = 132/198 (66%), Gaps = 13/198 (6%)
Query: 45 VIDGNLNDWATSDLVATGRDSGLQGANLDKLYIAWDDEYLYIAIKTNNTANWKVAYGIGI 104
V+DG+L+D+ T +T G GANL +LY+ +D YLYI T N+ +W VAYGIGI
Sbjct: 247 VVDGDLSDFGTPVATSTNPGGG-NGANLYRLYVTYDATYLYIGFDTQNSGSWDVAYGIGI 305
Query: 105 DVGPGGFTGSESGDSWGRKINFTRE--IDYEVYFWWDGKIWSDAFN--HWNGTDWEKYSI 160
D P G+TG D+WGRKI+F + +DYE+YFWW G D+ N WNG DW SI
Sbjct: 306 DTKPSGYTGDS--DAWGRKISFGADYAVDYEIYFWWAGGSGLDSNNFCEWNGLDWNYRSI 363
Query: 161 SEIGGEYAYTGDSSSGLQVLEVAIPWSALGGKPEKIAIITWIAGEEGSSAVDTLPVDPS- 219
++ GG + YTGD+SSGLQ +E+AIPWSA+GGK + +A+I WI G G SAVD++P D S
Sbjct: 364 ADAGGTFDYTGDTSSGLQTMEIAIPWSAIGGK-QDVALIVWITGGSG-SAVDSIPDDDST 421
Query: 220 IDYSNINGEWTDADMLSN 237
ID ++ EW D+D +N
Sbjct: 422 IDNAD---EWNDSDTFTN 436
Score = 153 bits (382), Expect = 1e-35
Identities = 85/209 (40%), Positives = 112/209 (52%), Gaps = 17/209 (8%)
Query: 940 IDGDLTDWKVEPIAEDTEGYGQDGANIKELYVNYDDNFLYIALVTDNKASWRVAYGIALD 999
+DGDL+D+ P+A T G +GAN+ LYV YD +LYI T N SW VAYGI +D
Sbjct: 248 VDGDLSDFGT-PVATSTNPGGGNGANLYRLYVTYDATYLYIGFDTQNSGSWDVAYGIGID 306
Query: 1000 YKEGGYISGGDAWGRKIDFAR--GVDAQLYFFWNGEFFGNPGTNNITSAQLILWTGTGWE 1057
K GY DAWGRKI F VD ++YF+W G + + S W G W
Sbjct: 307 TKPSGYTGDSDAWGRKISFGADYAVDYEIYFWW-------AGGSGLDSNNFCEWNGLDWN 359
Query: 1058 YKNL-DEVGFYAYTGG-EEGLKTLEIAIPWEVLGGKPEKIYVVAYVAGQAPGDSAVDMLP 1115
Y+++ D G + YTG GL+T+EIAIPW +GGK + +V G SAVD +P
Sbjct: 360 YRSIADAGGTFDYTGDTSSGLQTMEIAIPWSAIGGKQDVALIVWITGGSG---SAVDSIP 416
Query: 1116 LQDAVKDNEPGSEWGDEDYVTTFAEIQIS 1144
D+ DN EW D D T +Q++
Sbjct: 417 DDDSTIDN--ADEWNDSDTFTNLYLLQVN 443
Score = 145 bits (362), Expect = 3e-33
Identities = 141/466 (30%), Positives = 213/466 (45%), Gaps = 61/466 (13%)
Query: 18 MKRTVAILMALLLLL-----TPVKVAARYGTKVIDGNLNDWATSDLVATGRDSGLQGAN- 71
MK+ +L L L+L TP V T DG+L+DW S + D GA+
Sbjct: 1 MKKLFLVLAVLSLVLYGCLRTPPVVKDMVTT---DGSLSDWG-SKIKEDAADDSKWGADN 56
Query: 72 -LDKLYIAWDDEYLYIAIKTNNTANWKV-AYGIGID-VGPGG-----FTGSESGDSWGRK 123
L K + +D +YIA + + V + + ID VG G +TG G+
Sbjct: 57 ELLKAGLLFDGANIYIAGEYVIGGDGNVNVFLVLIDLVGVTGAQTVSYTGLNDGNRNFTN 116
Query: 124 INFTREIDYEVYFWWDGKIWSDAFNHWNGTDWEKYSISEIGGEYAYTGDSSSGLQVLEVA 183
N ++ EV + K+W + + S+++I + T +G + E+
Sbjct: 117 PNGDIDLIVEVNQSNEYKVWRVS---------QDGSLTDITDQV--TAQFGTGSTIAELK 165
Query: 184 IPWSALGGKPEKIAIITWIAGEEGSSAVDTLPVDPSIDYSNINGEWTDADMLSNFI---- 239
IP S + + + I+ G D P P D + NG + NF+
Sbjct: 166 IPISEQVNQVKAVFAISGGTGGGNQWVGDFYPNQPDHDSAE-NGGIPQPAPVVNFVVCDK 224
Query: 240 ------EISLTK----------VIDGNLDDWNKAELVAQGVPSGIEGANLDRLYVSWDSN 283
EI+ T V+DG+L D+ + P G GANL RLYV++D+
Sbjct: 225 EGNVSEEINQTSEPEQPTESVIVVDGDLSDFGTPVATSTN-PGGGNGANLYRLYVTYDAT 283
Query: 284 YLYIAIKTNNTAKYWPDYGVAIDVNPGSGIGGTYDPWAKKIYFSGTYLPDYIIYAEAQDG 343
YLYI T N+ + YG+ ID P SG G D W +KI F Y DY IY G
Sbjct: 284 YLYIGFDTQNSGSWDVAYGIGIDTKP-SGYTGDSDAWGRKISFGADYAVDYEIYFWWAGG 342
Query: 344 A-LTWVGLCKWDGNEWITGTNLNSVGEYAYIGG-DNGIQTIEIKVPWSALGGMPEKIAII 401
+ L C+W+G +W + ++ G + Y G +G+QT+EI +PWSA+GG + +A+I
Sbjct: 343 SGLDSNNFCEWNGLDWNYRSIADAGGTFDYTGDTSSGLQTMEIAIPWSAIGG-KQDVALI 401
Query: 402 AWVAGNEDGNSAVDTLPVDPS-IDYSNINSEWDDEDTLTNFAELEI 446
W+ G SAVD++P D S ID ++ EW+D DT TN L++
Sbjct: 402 VWITGG--SGSAVDSIPDDDSTIDNAD---EWNDSDTFTNLYLLQV 442
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.136 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479266113
Number of Sequences: 2977
Number of extensions: 23237672
Number of successful extensions: 45561
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45519
Number of HSP's gapped (non-prelim): 4
length of query: 1144
length of database: 189,106,746
effective HSP length: 58
effective length of query: 1086
effective length of database: 154,394,500
effective search space: 167672427000
effective search space used: 167672427000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 170 (70.6 bits)