BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1794 (PAB1794) DE:Hypothetical protein
         (175 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75131 hypothetical protein PAB1794 - Pyrococcus abyssi (st...   361  3e-99
pir||G71085 hypothetical protein PH0948 - Pyrococcus horikoshii ...   348  3e-95

>pir||E75131 hypothetical protein PAB1794 - Pyrococcus abyssi (strain Orsay)
           >gi|5458277|emb|CAB49766.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 175
           
 Score =  361 bits (917), Expect = 3e-99
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MQHVIALHQVYGELIFRGLKWHEIRRSRVFEEGDMVFLYIARGDLYTLKKTLRRLGLTEE 60
           MQHVIALHQVYGELIFRGLKWHEIRRSRVFEEGDMVFLYIARGDLYTLKKTLRRLGLTEE
Sbjct: 1   MQHVIALHQVYGELIFRGLKWHEIRRSRVFEEGDMVFLYIARGDLYTLKKTLRRLGLTEE 60

Query: 61  QTITKRGTIAGGFEVGEVIKADFETLWELTKDTSGLTFVHGEEEGKRWLKRYIDEYGYAF 120
           QTITKRGTIAGGFEVGEVIKADFETLWELTKDTSGLTFVHGEEEGKRWLKRYIDEYGYAF
Sbjct: 61  QTITKRGTIAGGFEVGEVIKADFETLWELTKDTSGLTFVHGEEEGKRWLKRYIDEYGYAF 120

Query: 121 VIEKPFLFKEPVTKEELKEKYGVHVEGIVHLSLRTRRPWVRALLEDLMSRDFEYI 175
           VIEKPFLFKEPVTKEELKEKYGVHVEGIVHLSLRTRRPWVRALLEDLMSRDFEYI
Sbjct: 121 VIEKPFLFKEPVTKEELKEKYGVHVEGIVHLSLRTRRPWVRALLEDLMSRDFEYI 175


>pir||G71085 hypothetical protein PH0948 - Pyrococcus horikoshii
           >gi|3257362|dbj|BAA30045.1| (AP000004) 175aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 175
           
 Score =  348 bits (883), Expect = 3e-95
 Identities = 166/175 (94%), Positives = 174/175 (98%)

Query: 1   MQHVIALHQVYGELIFRGLKWHEIRRSRVFEEGDMVFLYIARGDLYTLKKTLRRLGLTEE 60
           MQHVIALHQVYGELIFRGLKWHEIRRSRVFEEGD+VFLYIARGDLYTLKKTLR+LGLTEE
Sbjct: 1   MQHVIALHQVYGELIFRGLKWHEIRRSRVFEEGDIVFLYIARGDLYTLKKTLRKLGLTEE 60

Query: 61  QTITKRGTIAGGFEVGEVIKADFETLWELTKDTSGLTFVHGEEEGKRWLKRYIDEYGYAF 120
           QTITKRGTIAGGFEVGEVIKADFETLWELTKD+SGL+FVHGEEEGKRWLKRYI++YGYAF
Sbjct: 61  QTITKRGTIAGGFEVGEVIKADFETLWELTKDSSGLSFVHGEEEGKRWLKRYINDYGYAF 120

Query: 121 VIEKPFLFKEPVTKEELKEKYGVHVEGIVHLSLRTRRPWVRALLEDLMSRDFEYI 175
           VIEKPFLFK+PVT+EELKEKYGVHVEGIVHLSLRTRRPWVR LLEDLMSRDFEYI
Sbjct: 121 VIEKPFLFKDPVTREELKEKYGVHVEGIVHLSLRTRRPWVRELLEDLMSRDFEYI 175


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.143    0.429 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67553483
Number of Sequences: 2977
Number of extensions: 2841035
Number of successful extensions: 6538
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6536
Number of HSP's gapped (non-prelim): 2
length of query: 175
length of database: 189,106,746
effective HSP length: 50
effective length of query: 125
effective length of database: 159,182,396
effective search space: 19897799500
effective search space used: 19897799500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)