BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1795 (mrp) DE:MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING PROTEIN
(295 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75131 mrp-family probable nucleotide-binding protein PAB17... 593 e-169
sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|7446819|pir... 559 e-158
sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|2129169|pir... 278 6e-74
pir||E72233 conserved hypothetical protein - Thermotoga maritima... 235 7e-61
sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|7446831|pir||G70364 ... 235 7e-61
gb|AAK40784.1| MRP protein homolog, conserved ATPase (mrp) [Sulf... 233 3e-60
emb|CAC12597.1| (AL445067) probable nucleotide-binding protein [... 229 2e-59
sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|7446821|pir||S74379 ... 223 2e-57
gb|AAG19516.1| (AE005043) Mrp protein homolog; Mrp [Halobacteriu... 220 1e-56
pir||T06147 hypothetical protein F24J7.100 - Arabidopsis thalian... 217 1e-55
pir||F75448 mrp protein - Deinococcus radiodurans (strain R1) >g... 216 3e-55
dbj|BAB14203.1| (AK022722) unnamed protein product [Homo sapiens] 215 4e-55
pir||G81980 hypothetical protein NMA0611 [imported] - Neisseria ... 214 8e-55
pir||B82576 polysaccharide export protein XF2301 [imported] - Xy... 214 8e-55
pir||F81036 Mrp/NBP35 family protein NMB1846 [imported] - Neisse... 214 1e-54
sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|7446823|pir||G64545 ... 213 2e-54
sp|P45135|MRP_HAEIN MRP PROTEIN HOMOLOG >gi|1075171|pir||A64114 ... 213 2e-54
pir||G69023 nucleotide-binding protein, probable ATPase - Methan... 212 4e-54
pir||H71962 hypothetical protein jhp0193 - Helicobacter pylori (... 210 1e-53
pir||E82249 mrp protein VC1037 [imported] - Vibrio cholerae (gro... 209 3e-53
pir||S11948 mrp protein - Escherichia coli >gi|42017|emb|CAA3931... 207 1e-52
sp|P21590|MRP_ECOLI MRP PROTEIN >gi|7446818|pir||H64978 probable... 207 1e-52
sp|P72190|YCAB_PSEFR HYPOTHETICAL 30.2 KD PROTEIN IN CAPB 3'REGI... 207 1e-52
pir||E72780 probable nucleotide-binding protein APE0230 - Aeropy... 206 3e-52
pir||D81256 probable ATP/GTP-binding protein (mrp protein homolo... 205 4e-52
pir||B83210 conserved hypothetical protein PA3481 [imported] - P... 205 4e-52
emb|CAC01353.1| (AL390975) putative ATP-binding protein [Strepto... 202 4e-51
gi|11499850 nucleotide-binding protein [Archaeoglobus fulgidus] ... 199 2e-50
pir||T39000 probable nucleotide binding protein - fission yeast ... 198 9e-50
gi|11499959 nucleotide-binding protein [Archaeoglobus fulgidus] ... 197 2e-49
dbj|BAB08742.1| (AB017063) nucleotide-binding protein [Arabidops... 190 1e-47
gi|6322188 Yil003wp [Saccharomyces cerevisiae] >gi|731773|sp|P40... 190 2e-47
sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|11279019|pir||T45199... 190 2e-47
gb|AAF57258.1| (AE003783) CG3262 gene product [Drosophila melano... 187 1e-46
gi|6754906 nucleotide binding protein 1 [Mus musculus] >gi|60181... 187 2e-46
gb|AAF51623.1| (AE003591) CG4858 gene product [Drosophila melano... 185 4e-46
pir||T39094 WD domain, G-beta repeat protein - fission yeast (S... 185 7e-46
emb|CAC04440.1| (AL391572) related to nucleotide-binding protein... 183 2e-45
gi|11431846 nucleotide binding protein 1 (E.coli MinD like) [Hom... 183 2e-45
gi|4505337 nucleotide binding protein 1 (E.coli MinD like); nucl... 182 5e-45
gi|6321347 35 kDa nucleotide binding protein; Nbp35p [Saccharomy... 178 7e-44
sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|7446833|pir||H70508 ... 176 2e-43
gi|6912540 nucleotide binding protein 2 (E.coli MinD like) [Homo... 176 2e-43
dbj|BAB03959.1| (AP001507) ATP-binding Mrp protein (Mrp/Nbp35 fa... 176 3e-43
pir||JC5219 nuclear binding protein 35 - yeast (Saccharomyces ce... 176 3e-43
dbj|BAA91471.1| (AK001023) unnamed protein product [Homo sapiens] 176 3e-43
gi|6754908 nucleotide binding protein 2 [Mus musculus] >gi|60181... 174 1e-42
sp|P50863|MRP_BACSU MRP PROTEIN HOMOLOG >gi|7446824|pir||A69743 ... 169 3e-41
gb|AAF53559.1| (AE003652) CG17904 gene product [Drosophila melan... 169 3e-41
sp|Q93459|MRPL_CAEEL MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING PROT... 166 2e-40
emb|CAB71141.1| (AJ271724) hypothetical protein OrfA [Eubacteriu... 159 5e-38
emb|CAC14524.1| (AL446004) MRP-family nucleotide-binding protein... 159 5e-38
sp|Q9ZE27|MRP_RICPR MRP PROTEIN HOMOLOG >gi|7467663|pir||G71721 ... 147 1e-34
gb|AAD01903.1| (AF030511) MRP ATPase homolog [Actinobacillus ple... 126 3e-28
gb|AAD01696.1| (AF021919) MRP ATPase homolog [Actinobacillus ple... 125 6e-28
emb|CAC09490.1| (AL442114) putative nucleotide-binding protein [... 119 4e-26
pir||D71036 probable ATP-binding protein - Pyrococcus horikoshii... 118 6e-26
pir||A75178 mrp protein homolog PAB0400 - Pyrococcus abyssi (str... 114 1e-24
sp|P53381|MRP_CLOPE MRP PROTEIN HOMOLOG >gi|1149678|emb|CAA60227... 114 1e-24
emb|CAA86248.1| (Z38113) incomplete orf, len: 160, CAI: 0.09 sim... 111 1e-23
emb|CAC01046.1| (AL390935) possible mrp ATPase homolog [Leishman... 100 2e-20
emb|CAA86200.1| (Z38062) len: 138, CAI: 0.15, incomplete ORF sim... 89 5e-17
gi|11467859 septum-site determining protein [Nephroselmis olivac... 80 2e-14
sp|Q01464|MIND_BACSU SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 78 2e-13
pir||C71105 probable cell division inhibitor MinD - Pyrococcus h... 77 2e-13
sp|Q55900|MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 75 8e-13
pir||A75056 cell division inhibitor (mind-2) PAB0954 - Pyrococcu... 75 8e-13
gi|11498303 cell division inhibitor (minD-1) [Archaeoglobus fulg... 75 1e-12
pir||F75175 cell division inhibitor (mind-1) PAB1983 - Pyrococcu... 74 2e-12
sp|Q9X2I3|MIND_THEMA SEPTUM SITE-DETERMINING PROTEIN MIND (CELL ... 72 9e-12
>pir||D75131 mrp-family probable nucleotide-binding protein PAB1795 - Pyrococcus
abyssi (strain Orsay) >gi|5458276|emb|CAB49765.1|
(AJ248285) MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING
PROTEIN [Pyrococcus abyssi]
Length = 295
Score = 593 bits (1513), Expect = e-169
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MTIKAPALNLPGLGADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGY 60
MTIKAPALNLPGLGADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGY
Sbjct: 1 MTIKAPALNLPGLGADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGY 60
Query: 61 FVGILDADIHGPNVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMV 120
FVGILDADIHGPNVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMV
Sbjct: 61 FVGILDADIHGPNVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMV 120
Query: 121 PEDQPIIWRGALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVT 180
PEDQPIIWRGALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVT
Sbjct: 121 PEDQPIIWRGALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVT 180
Query: 181 TPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGV 240
TPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGV
Sbjct: 181 TPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGV 240
Query: 241 DFLGKIPIDLKAREASDLGIPIVLYGDTPAAKAFMEIAEKLVNKLKEMKGDEKKE 295
DFLGKIPIDLKAREASDLGIPIVLYGDTPAAKAFMEIAEKLVNKLKEMKGDEKKE
Sbjct: 241 DFLGKIPIDLKAREASDLGIPIVLYGDTPAAKAFMEIAEKLVNKLKEMKGDEKKE 295
>sp|O58667|Y949_PYRHO HYPOTHETICAL PROTEIN PH0949 >gi|7446819|pir||H71085 probable MRP
protein - Pyrococcus horikoshii
>gi|3257363|dbj|BAA30046.1| (AP000004) 295aa long
hypothetical MRP protein [Pyrococcus horikoshii]
Length = 295
Score = 559 bits (1426), Expect = e-158
Identities = 273/295 (92%), Positives = 284/295 (95%)
Query: 1 MTIKAPALNLPGLGADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGY 60
MTIK P + +PGLG DPL QRIKEKEKKWKYK+AVLSGKGGVGKSTVAVNLTAALAKMGY
Sbjct: 1 MTIKTPTVKVPGLGTDPLEQRIKEKEKKWKYKIAVLSGKGGVGKSTVAVNLTAALAKMGY 60
Query: 61 FVGILDADIHGPNVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMV 120
FVGILDADIHGPNVAKMLGV+KEE+YAEKFDDGHFEMIPP DFMGQVTPIKVMSMGMMV
Sbjct: 61 FVGILDADIHGPNVAKMLGVDKEEVYAEKFDDGHFEMIPPTTDFMGQVTPIKVMSMGMMV 120
Query: 121 PEDQPIIWRGALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVT 180
PEDQP+IWRG LVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSI+LDAAIIVT
Sbjct: 121 PEDQPVIWRGPLVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIKLDAAIIVT 180
Query: 181 TPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGV 240
TPQEVALLDTGKAVNMMKKMEVPY+AVVENMSYLICPHCGNKIDIFGEGGGEKLA+KEGV
Sbjct: 181 TPQEVALLDTGKAVNMMKKMEVPYVAVVENMSYLICPHCGNKIDIFGEGGGEKLAQKEGV 240
Query: 241 DFLGKIPIDLKAREASDLGIPIVLYGDTPAAKAFMEIAEKLVNKLKEMKGDEKKE 295
DFLGKIPIDLKAREASDLGIPIVLY DTPAAKAFME+AEKLVNKLKE+KGD KE
Sbjct: 241 DFLGKIPIDLKAREASDLGIPIVLYEDTPAAKAFMELAEKLVNKLKEIKGDGGKE 295
>sp|Q57731|Y283_METJA HYPOTHETICAL PROTEIN MJ0283 >gi|2129169|pir||D64335
nucleotide-binding protein - Methanococcus jannaschii
>gi|1591007|gb|AAB98271.1| (U67483) nucleotide-binding
protein [Methanococcus jannaschii]
Length = 290
Score = 278 bits (703), Expect = 6e-74
Identities = 143/271 (52%), Positives = 194/271 (70%), Gaps = 13/271 (4%)
Query: 21 RIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGV 80
+I+E K K+K+ +LSGKGGVGKSTV VNL AAL MG VG+LDADIHGPN+ KMLGV
Sbjct: 30 KIRENMSKIKHKIVILSGKGGVGKSTVTVNLAAALNLMGKKVGVLDADIHGPNIPKMLGV 89
Query: 81 EKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQ-PIIWRGALVTKAIKQ 139
E + A G F ++ IK MS+G ++P+D+ P+IWRG V+ AI+Q
Sbjct: 90 ENTQPMAGPA--GIFPIVTKDG--------IKTMSIGYLLPDDKTPVIWRGPKVSGAIRQ 139
Query: 140 LLGDVKWGSLDFMIIDFPPGTGDEILTVVQSI-QLDAAIIVTTPQEVALLDTGKAVNMMK 198
L DV WG LD+++ID PPGTGDE LT++QSI +D AIIVTTP+EV++LD K++ M K
Sbjct: 140 FLSDVVWGELDYLLIDTPPGTGDEQLTIMQSIPDIDGAIIVTTPEEVSVLDVKKSIMMAK 199
Query: 199 KMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDL 258
+ +P I ++ENMS +CP+C +DIFG GGGEK A++ GV+FLG+IP+D+KAREASD
Sbjct: 200 MLNIPIIGIIENMSGFVCPYCNKVVDIFGRGGGEKAAKELGVEFLGRIPLDIKAREASDK 259
Query: 259 GIPIVLYGDTPAAKAFMEIAEKLVNKLKEMK 289
GIP+VL D A++ F +I +++V K++ K
Sbjct: 260 GIPMVLL-DCKASEEFKKIVKRIVEKVEGKK 289
>pir||E72233 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982164|gb|AAD36660.1|AE001804_4 (AE001804)
conserved hypothetical protein [Thermotoga maritima]
Length = 247
Score = 235 bits (592), Expect = 7e-61
Identities = 124/258 (48%), Positives = 169/258 (65%), Gaps = 23/258 (8%)
Query: 32 KVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGV-----EKEEIY 86
K+AV+SGKGGVGK+TVAVNL ALA GY VG+LD D+HGPNV +MLGV E E+I
Sbjct: 6 KIAVMSGKGGVGKTTVAVNLAVALAAEGYQVGLLDLDLHGPNVQRMLGVSLPPSEGEKIV 65
Query: 87 AEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKW 146
K+ D +KV S+ M++ E P+IWRG L KAI+QL DV+W
Sbjct: 66 PAKYGDS-----------------LKVFSLAMILQEGAPVIWRGPLKHKAIEQLTRDVEW 108
Query: 147 GSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIA 206
G LD++I D PPGTGDE L+ Q I+ DA I+V+TPQ+VA D +A+N +K++ +
Sbjct: 109 GDLDYLICDLPPGTGDEALSTFQIIKPDAVIVVSTPQKVAGDDVRRAINFVKRLSGKILG 168
Query: 207 VVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLY- 265
+VENMSYL+CP+CG KI +FG+G EKLAE+ G+ + +IP+D + SD G P V+Y
Sbjct: 169 LVENMSYLVCPNCGEKIYVFGKGETEKLAEEFGIPLIARIPMDPEVVSLSDEGRPAVVYK 228
Query: 266 GDTPAAKAFMEIAEKLVN 283
T + F +I EK+++
Sbjct: 229 RGTVIEEEFKKIVEKVLS 246
>sp|O66946|MRP_AQUAE MRP PROTEIN HOMOLOG >gi|7446831|pir||G70364 conserved hypothetical
protein aq_737 - Aquifex aeolicus
>gi|2983325|gb|AAC06915.1| (AE000705) hypothetical
protein [Aquifex aeolicus]
Length = 364
Score = 235 bits (592), Expect = 7e-61
Identities = 125/278 (44%), Positives = 186/278 (65%), Gaps = 16/278 (5%)
Query: 17 PLTQRIKEKEKKW---KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPN 73
P TQ+ KK K+ +AV SGKGGVGKSTVA NL AL+++GY VG+LDAD++GP+
Sbjct: 96 PQTQQPMFTRKKVPGVKHIIAVGSGKGGVGKSTVAANLAVALSQLGYKVGLLDADVYGPS 155
Query: 74 VAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVP-EDQPIIWRGAL 132
V + G++ E + ++F + I P+ + +K++S+G M+P ED PIIWRG +
Sbjct: 156 VPTLFGLKGERVTVDQF-----QRIIPVEKY-----GLKILSIGFMLPSEDTPIIWRGPM 205
Query: 133 VTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGK 192
+ KA+ + L KWG+LDF+++D PPGTGD +T+ Q+++L A++VTTPQ+VAL D K
Sbjct: 206 LMKALTEFLFSTKWGNLDFLVMDLPPGTGDVQITLAQNVELTGAVVVTTPQDVALADVKK 265
Query: 193 AVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKA 252
AV+M +++ +P + V+ENM+Y ICP K IFG+G + A G+ LG IPID +
Sbjct: 266 AVSMFREVNIPVLGVIENMAYFICPSDKQKYYIFGKGKVAEFANAYGLKILGSIPIDPEV 325
Query: 253 REASDLGIPIVL-YGDTPAAKAFMEIAEKLVNKLKEMK 289
E SD G PIV+ + D+ AKAF+ IA K+++++ E K
Sbjct: 326 AEKSDKGEPIVISHPDSEVAKAFLSIA-KVLSQVVESK 362
>gb|AAK40784.1| MRP protein homolog, conserved ATPase (mrp) [Sulfolobus
solfataricus]
Length = 296
Score = 233 bits (587), Expect = 3e-60
Identities = 122/265 (46%), Positives = 172/265 (64%), Gaps = 13/265 (4%)
Query: 21 RIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGV 80
+++ K K KYK+ V+SGKGGVGKS V+ NL A+A G VGI+D D HGP+V KMLGV
Sbjct: 35 KVQMKMKNIKYKIGVVSGKGGVGKSFVSSNLAMAIAASGRKVGIVDVDFHGPSVPKMLGV 94
Query: 81 EKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVP-EDQPIIWRGALVTKAIKQ 139
+ + A+ D G +I P IKV+S+ ++P +D P++WRGA+ AIKQ
Sbjct: 95 RGQMLTAD--DKGINPVIGPFG--------IKVVSIDFLLPRDDTPVVWRGAIKHSAIKQ 144
Query: 140 LLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQ-LDAAIIVTTPQEVALLDTGKAVNMMK 198
LGDV WG LD++IID PPGTGDE L++ Q + + +IVT P EV+ L K++N +
Sbjct: 145 FLGDVNWGELDYLIIDMPPGTGDEALSIAQLVPGITGFVIVTIPSEVSTLAVKKSINFAR 204
Query: 199 KMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDL 258
+ + VVENMS+ +CP G IFGEG G+K+AE+ GVD LG++P+D EA+D
Sbjct: 205 TVNTKILGVVENMSHFVCPSDGKVYYIFGEGKGKKMAEEMGVDLLGQVPLDPSIAEANDA 264
Query: 259 GIPIVL-YGDTPAAKAFMEIAEKLV 282
G P L + D+P +K F+ IA+K++
Sbjct: 265 GEPFFLKHPDSPTSKEFLNIADKVI 289
>emb|CAC12597.1| (AL445067) probable nucleotide-binding protein [Thermoplasma
acidophilum]
Length = 255
Score = 229 bits (579), Expect = 2e-59
Identities = 119/240 (49%), Positives = 163/240 (67%), Gaps = 12/240 (5%)
Query: 30 KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEK 89
KY + V+SGKGGVGKSTVAVNL +LA+ G VG++DADI+GP+ K+LGV ++YA++
Sbjct: 2 KYTITVMSGKGGVGKSTVAVNLAVSLARKGLKVGLIDADINGPDDPKLLGVSDLKLYADE 61
Query: 90 FDDGHFEMIPPMADFMGQVTPIKVMSMGMMVP-EDQPIIWRGALVTKAIKQLLGDVKWGS 148
E I P G ++V+SMG ++P ED PIIWRG+L+ KAI+Q L DV W
Sbjct: 62 ------EGIIPAETRYG----VRVVSMGFLIPTEDTPIIWRGSLMHKAIQQFLEDVNWKD 111
Query: 149 LDFMIIDFPPGTGDEILTVVQSI-QLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAV 207
D +++D PPGTGD L+V Q I + + +IV TPQ+VALLD KA+N K++++P + +
Sbjct: 112 TDVVVLDMPPGTGDVALSVAQLIPESNGVVIVVTPQDVALLDAKKAINFAKQLKLPVLGI 171
Query: 208 VENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGD 267
+ENMS +CPHCGN IF GGGEK A++ + FLGKIP+ + E D GIP V+ D
Sbjct: 172 IENMSGFVCPHCGNVTYIFKNGGGEKSAKEYNLPFLGKIPLIPEIAENGDNGIPAVVIND 231
>sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|7446821|pir||S74379 probable ATPase -
Synechocystis sp. (strain PCC 6803)
>gi|1001155|dbj|BAA10297.1| (D64001) put. ATPase
[Synechocystis sp.]
Length = 353
Score = 223 bits (562), Expect = 2e-57
Identities = 114/255 (44%), Positives = 169/255 (65%), Gaps = 9/255 (3%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+A+ SGKGGVGKSTVAVN+ ALA+ G VG+LDADI+GPN MLG+ + +
Sbjct: 100 IAISSGKGGVGKSTVAVNVAVALAQTGAAVGLLDADIYGPNAPTMLGLSGAAVQVQNSPQ 159
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
G E++ P+ + IK++SMG ++ DQP+IWRG ++ I+Q L V WG+LD++
Sbjct: 160 G--EVLEPVFNH-----GIKMVSMGFLIDPDQPVIWRGPMLNGIIRQFLYQVNWGALDYL 212
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
I+D PPGTGD LT+ QS+ + A+IVTTPQ V+LLD + + M ++M V + +VENMS
Sbjct: 213 IVDMPPGTGDAQLTLTQSVPMAGAVIVTTPQTVSLLDARRGLKMFQQMGVNVLGIVENMS 272
Query: 213 YLICPHCGNK-IDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVL-YGDTPA 270
Y I P ++ D+FG GGGEK +++ V LG +P+++ RE D G+PIV+ ++ +
Sbjct: 273 YFIPPDLPDRQYDLFGSGGGEKASKELNVPLLGCVPLEIGLREGGDKGVPIVVSQPESAS 332
Query: 271 AKAFMEIAEKLVNKL 285
AKA IA+++ K+
Sbjct: 333 AKALTAIAKQIAGKV 347
>gb|AAG19516.1| (AE005043) Mrp protein homolog; Mrp [Halobacterium sp. NRC-1]
Length = 343
Score = 220 bits (556), Expect = 1e-56
Identities = 115/256 (44%), Positives = 155/256 (59%), Gaps = 11/256 (4%)
Query: 30 KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEK 89
K VAV SGKGGVGKSTVAVNL AAL+ G VG+ DADI+GPNV +M+ + E
Sbjct: 89 KNVVAVASGKGGVGKSTVAVNLAAALSDRGARVGLFDADIYGPNVPRMVDADDHPQATET 148
Query: 90 FDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSL 149
++PP M K+MSM MV ED P+IWRG +V K + QL+ DV+WG L
Sbjct: 149 ET-----IVPPEKHGM------KLMSMAFMVGEDDPVIWRGPMVHKVLTQLIEDVEWGYL 197
Query: 150 DFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVE 209
D++++D PPGTGD LT++Q++ L +++VTTP++VA+ D K + M + + + VVE
Sbjct: 198 DYLVVDLPPGTGDTQLTLLQTLPLTGSVVVTTPEDVAVDDARKGLRMFGRHDTTVLGVVE 257
Query: 210 NMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGDTP 269
NMS +CP CG DIFG GGGE+ A + FLG IP+D R D G P+ L D
Sbjct: 258 NMSSFVCPDCGGTHDIFGAGGGEEFATANELPFLGSIPLDPSVRAGGDNGQPVALDPDNE 317
Query: 270 AAKAFMEIAEKLVNKL 285
+F A + + L
Sbjct: 318 TGASFRTFAAETADML 333
>pir||T06147 hypothetical protein F24J7.100 - Arabidopsis thaliana
>gi|2853081|emb|CAA16931.1| (AL021768) ATP binding
protein-like [Arabidopsis thaliana]
>gi|7268750|emb|CAB78956.1| (AL161551) ATP binding
protein-like [Arabidopsis thaliana]
Length = 313
Score = 217 bits (548), Expect = 1e-55
Identities = 107/266 (40%), Positives = 173/266 (64%), Gaps = 15/266 (5%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALA-KMGYFVGILDADIHGPNVAKMLGV-EKEEIYAEKF 90
+AV SGKGGVGKS+ AVNL ALA K +G+LDAD++GP+V M+ + +K ++ +
Sbjct: 46 IAVASGKGGVGKSSTAVNLAVALANKCELKIGLLDADVYGPSVPIMMNINQKPQVNQD-- 103
Query: 91 DDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLD 150
+MIP + +K MSMG++V +D P++WRG +V A+ ++ V WG LD
Sbjct: 104 ----MKMIPV------ENYGVKCMSMGLLVEKDAPLVWRGPMVMSALAKMTKGVDWGDLD 153
Query: 151 FMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVEN 210
+++D PPGTGD +++ Q+++L A+IV+TPQ+VAL D + ++M K+ VP + +VEN
Sbjct: 154 ILVVDMPPGTGDAQISISQNLKLSGAVIVSTPQDVALADANRGISMFDKVRVPILGLVEN 213
Query: 211 MSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYG-DTP 269
MS +CPHC IFG+ G + A K+G+ +G+IP+++ RE SD G+P+V+ +
Sbjct: 214 MSCFVCPHCNEPSFIFGKEGARRTAAKKGLKLIGEIPLEMSIREGSDEGVPVVVSSPGSI 273
Query: 270 AAKAFMEIAEKLVNKLKEMKGDEKKE 295
+KA+ ++A+ +V LKE++ + E
Sbjct: 274 VSKAYQDLAQNVVKGLKELRENPDNE 299
>pir||F75448 mrp protein - Deinococcus radiodurans (strain R1)
>gi|6458727|gb|AAF10574.1|AE001952_2 (AE001952) mrp
protein [Deinococcus radiodurans]
Length = 350
Score = 216 bits (544), Expect = 3e-55
Identities = 113/257 (43%), Positives = 166/257 (63%), Gaps = 13/257 (5%)
Query: 30 KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEK 89
K+ V V SGKGGVGKS+VAVNL A+LA+ G VG+LDAD++GP+VA MLG + + A
Sbjct: 91 KHVVLVGSGKGGVGKSSVAVNLAASLARDGARVGLLDADVYGPSVAHMLGQGQARVTAN- 149
Query: 90 FDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSL 149
+D I + ++ +SM + P Q ++WRG ++ AI+Q L D WG L
Sbjct: 150 -EDRKMRPI--------EAHGVRFISMANLSPAGQALVWRGPMLHSAIQQFLKDSAWGEL 200
Query: 150 DFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVE 209
D++I+D PPGTGD L++ Q++Q+ A+IVTTPQ+VAL+D +A++M +K VP + VVE
Sbjct: 201 DYLIVDLPPGTGDVQLSLTQTVQVTGAVIVTTPQDVALIDAARAIDMFRKASVPVLGVVE 260
Query: 210 NMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVL-YGDT 268
NMSY + P G DIFG GG KL E+ LG+IP+D++ R+ +D G P +L + ++
Sbjct: 261 NMSYFVAPDTGLTYDIFGRGGSRKLGEQ--YPLLGEIPLDVEVRKDADAGAPAILAHPES 318
Query: 269 PAAKAFMEIAEKLVNKL 285
AA+A +A L ++
Sbjct: 319 VAAQALRAVARTLAGQI 335
>dbj|BAB14203.1| (AK022722) unnamed protein product [Homo sapiens]
Length = 289
Score = 215 bits (543), Expect = 4e-55
Identities = 119/289 (41%), Positives = 176/289 (60%), Gaps = 24/289 (8%)
Query: 10 LPGLGADPLTQRIKE-------KEKKW---KYKVAVLSGKGGVGKSTVAVNLTAALAK-- 57
L G G++ L QR + K+K K + V SGKGGVGKST AVNL ALA
Sbjct: 7 LSGAGSETLKQRRTQIMSRGLPKQKPIEGVKQVIVVASGKGGVGKSTTAVNLALALAAND 66
Query: 58 MGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMG 117
+G+LD D++GP+V KM+ ++ ++ ++ P+ ++ I MSMG
Sbjct: 67 SSKAIGLLDVDVYGPSVPKMMNLKGNPELSQS------NLMRPLLNY-----GIACMSMG 115
Query: 118 MMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAI 177
+V E +P++WRG +V AI++LL V WG LD++++D PPGTGD L+V Q+I + A+
Sbjct: 116 FLVEESEPVVWRGLMVMSAIEKLLRQVDWGQLDYLVVDMPPGTGDVQLSVSQNIPITGAV 175
Query: 178 IVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEK 237
IV+TPQ++AL+D K M +++ VP + +V+NMS CP C +K IFG G KLA+
Sbjct: 176 IVSTPQDIALMDAHKGAEMFRRVHVPVLGLVQNMSVFQCPKCKHKTHIFGADGARKLAQT 235
Query: 238 EGVDFLGKIPIDLKAREASDLGIPIVL-YGDTPAAKAFMEIAEKLVNKL 285
G++ LG IP+ L REASD G PIV ++ AKA++ IA ++V +L
Sbjct: 236 LGLEVLGDIPLHLNIREASDTGQPIVFSQPESDEAKAYLRIAVEVVRRL 284
>pir||G81980 hypothetical protein NMA0611 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379346|emb|CAB83901.1|
(AL162753) hypothetical protein NMA0611 [Neisseria
meningitidis Z2491]
Length = 375
Score = 214 bits (540), Expect = 8e-55
Identities = 108/238 (45%), Positives = 158/238 (66%), Gaps = 10/238 (4%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+AV SGKGGVGKST NL AA+A+MG VG+LDAD++GP+ MLGV+ K D
Sbjct: 115 IAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDR-----KPDQ 169
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
+ ++IP + I+VMS+G +V DQ ++WRG +V++A++QL+ +W +D++
Sbjct: 170 KNQKLIPVESS-----DGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYL 224
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
ID PPGTGD LT+ Q I + ++IVTTPQ++AL+D KAV+M +K+ +P + V+ENMS
Sbjct: 225 FIDLPPGTGDIQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMS 284
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGDTPA 270
IC +CG+ +FG GG+ LA + V LG++P+ L REA D G P L+ + PA
Sbjct: 285 VHICTNCGHSEALFGTDGGKDLAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPA 342
>pir||B82576 polysaccharide export protein XF2301 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9107465|gb|AAF85100.1|AE004041_12 (AE004041)
polysaccharide export protein [Xylella fastidiosa]
Length = 303
Score = 214 bits (540), Expect = 8e-55
Identities = 110/232 (47%), Positives = 152/232 (65%), Gaps = 11/232 (4%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+AV SGKGGVGKST+AVNL AL + G VG+LDADI+GP+V MLG+ E D+
Sbjct: 46 IAVGSGKGGVGKSTIAVNLAVALQRTGARVGVLDADIYGPSVPAMLGLSGRP---ESPDN 102
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
++I P+ F I+ MS+G+++ D P+IWRG + T A+ QL D WG LD++
Sbjct: 103 ---KLIEPLRAF-----GIEAMSIGLLIDVDTPMIWRGPMATSALTQLFNDTLWGDLDYL 154
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
+ID PPGTGD LT+ Q I + A+IVTTPQ++A LD KA+ M +K+ VP + +VENM+
Sbjct: 155 LIDLPPGTGDIQLTLSQKIPVAGAVIVTTPQDIATLDARKALKMFEKVNVPVLGIVENMA 214
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVL 264
C CG+ +FGEGG +++AE V LG +P+D+ RE DLG PI +
Sbjct: 215 MHCCRQCGHVEHLFGEGGAQQMAEHYHVPLLGSLPLDIAIREHGDLGQPITV 266
>pir||F81036 Mrp/NBP35 family protein NMB1846 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227102|gb|AAF42181.1| (AE002534) Mrp/NBP35 family
protein [Neisseria meningitidis MC58]
Length = 359
Score = 214 bits (539), Expect = 1e-54
Identities = 112/260 (43%), Positives = 166/260 (63%), Gaps = 15/260 (5%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+AV SGKGGVGKST NL AA+A+MG VG+LDAD++GP+ MLGV+ K D
Sbjct: 99 IAVASGKGGVGKSTTTANLAAAMARMGARVGVLDADLYGPSQPTMLGVDDR-----KPDQ 153
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
+ ++IP + I+VMS+G +V DQ ++WRG +V++A++QL+ +W +D++
Sbjct: 154 KNQKLIPVESS-----DGIQVMSIGFLVDTDQAVVWRGPMVSQALQQLMFQSEWDEVDYL 208
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
ID PPGTGD LT+ Q I + ++IVTTPQ++AL+D KAV+M +K+ +P + V+ENMS
Sbjct: 209 FIDLPPGTGDIQLTLSQRIPVTGSVIVTTPQDIALIDARKAVDMFRKVNIPILGVLENMS 268
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGDTPA-- 270
IC +CG+ +FG GG+ A + V LG++P+ L REA D G P L+ + PA
Sbjct: 269 VHICTNCGHSEALFGTDGGKDFAARLNVPLLGQLPLSLPVREAMDGGTPAQLFDEHPAIA 328
Query: 271 ---AKAFMEIAEKLVNKLKE 287
A +IA + +K K+
Sbjct: 329 RIYTDAAFQIALSIADKGKD 348
>sp|O24999|MRP_HELPY MRP PROTEIN HOMOLOG >gi|7446823|pir||G64545 ATP-binding protein -
Helicobacter pylori (strain 26695)
>gi|2313292|gb|AAD07271.1| (AE000540) ATP-binding
protein (mpr) [Helicobacter pylori 26695]
Length = 412
Score = 213 bits (537), Expect = 2e-54
Identities = 109/271 (40%), Positives = 169/271 (62%), Gaps = 10/271 (3%)
Query: 23 KEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEK 82
K K K+ V + SGKGGVGKST +VNL+ ALA + VG+LDAD++GPN+ +M+G++
Sbjct: 134 KNLAKNIKHVVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQS 193
Query: 83 EEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLG 142
++ D ++IP A + VMSMG++ E Q +IWRG ++ +AI+Q+L
Sbjct: 194 ADVI---MDPSGKKLIPLKA------FGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLS 244
Query: 143 DVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEV 202
D+ WG LD +++D PPGTGD LT+ Q++ L A I VTTPQ V+L D ++++M KK+ +
Sbjct: 245 DIIWGDLDVLVVDMPPGTGDAQLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHI 304
Query: 203 PYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPI 262
P +VENM +C HC + +IFG +L E L K+P++ K R D G PI
Sbjct: 305 PIAGIVENMGSFVCEHCKKESEIFGSNSMSELLEAYHTQILAKLPLEPKVRLGGDRGEPI 364
Query: 263 VL-YGDTPAAKAFMEIAEKLVNKLKEMKGDE 292
V+ + ++ +AK F ++A+ L L+ +K ++
Sbjct: 365 VISHPNSVSAKIFEKMAQDLSAFLERVKKEK 395
>sp|P45135|MRP_HAEIN MRP PROTEIN HOMOLOG >gi|1075171|pir||A64114 probable ATPase mrp -
Haemophilus influenzae (strain Rd KW20)
>gi|1574732|gb|AAC22925.1| (U32807) ATP-binding protein
(mrp) [Haemophilus influenzae Rd]
Length = 386
Score = 213 bits (536), Expect = 2e-54
Identities = 112/259 (43%), Positives = 160/259 (61%), Gaps = 21/259 (8%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+AV SGKGGVGKS+V+VNL AL G VGILDADI+GP++ MLG +
Sbjct: 126 IAVSSGKGGVGKSSVSVNLALALQAQGARVGILDADIYGPSIPHMLGAADQR-------- 177
Query: 93 GHFEMIPPMADFMGQVTPIKVM-----SMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWG 147
P + +TPIK S+G ++ ED IWRG + + A+ QLL + W
Sbjct: 178 -------PTSPDNQHITPIKAHGLSANSIGFLMNEDSATIWRGPMASSALSQLLNETLWD 230
Query: 148 SLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAV 207
SLD+++ID PPGTGD LT+ Q I + A++VTTPQ++ALLD K ++M +++ VP + +
Sbjct: 231 SLDYLVIDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAVKGISMFERVSVPVLGI 290
Query: 208 VENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIP-IVLYG 266
VENMS IC CG+ IFG GG EK+AEK V L ++P+ ++ RE D G P +V
Sbjct: 291 VENMSMHICSECGHHEAIFGTGGAEKMAEKYNVKVLAQLPLHIRIREDLDAGNPTVVRVP 350
Query: 267 DTPAAKAFMEIAEKLVNKL 285
+ ++AF+++AEK+ +L
Sbjct: 351 ENEISQAFLQLAEKVSTEL 369
>pir||G69023 nucleotide-binding protein, probable ATPase - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622283|gb|AAB85665.1| (AE000886) nucleotide-binding
protein (putative ATPase) [Methanobacterium
thermoautotrophicum]
Length = 276
Score = 212 bits (534), Expect = 4e-54
Identities = 108/224 (48%), Positives = 150/224 (66%), Gaps = 12/224 (5%)
Query: 28 KWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYA 87
K K+K+ V+SGKGGVGKSTV V L ++ GY V +LDAD+HGP++ KM+ V + EI
Sbjct: 27 KIKHKIVVMSGKGGVGKSTVTVKLAEEFSRNGYSVCVLDADVHGPDIPKMMRVREPEITL 86
Query: 88 EKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVP-EDQPIIWRGALVTKAIKQLLGDVKW 146
+I P+ +G VMS+ +P ED P+IWRG T AI+QLL DV W
Sbjct: 87 TG------NLINPIPTPVGAT----VMSIEFFLPSEDTPVIWRGPKKTGAIRQLLADVNW 136
Query: 147 GSLDFMIIDFPPGTGDEILTVVQSIQ-LDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYI 205
+D +I+D PPGTGDE LTV+QSI +D +IVTTPQEV++ D K +NM+ +++P +
Sbjct: 137 EGIDVLIVDNPPGTGDEPLTVLQSIPGIDGVVIVTTPQEVSIHDVEKCINMVNHLKIPVL 196
Query: 206 AVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPID 249
++ENMSYL CP CG K+ +FG+ GG+ LA+K + FLG+IP +
Sbjct: 197 GIIENMSYLQCPECGKKVFLFGKDGGKYLADKFDLQFLGEIPFE 240
>pir||H71962 hypothetical protein jhp0193 - Helicobacter pylori (strain J99)
>gi|4154712|gb|AAD05776.1| (AE001457) putative
[Helicobacter pylori J99]
Length = 368
Score = 210 bits (530), Expect = 1e-53
Identities = 111/277 (40%), Positives = 169/277 (60%), Gaps = 13/277 (4%)
Query: 23 KEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEK 82
K K K+ V + SGKGGVGKST +VNL+ ALA + VG+LDAD++GPN+ +M+G++
Sbjct: 90 KNLAKNIKHVVMISSGKGGVGKSTTSVNLSIALANLNQKVGLLDADVYGPNIPRMMGLQN 149
Query: 83 EEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLG 142
++ D ++IP A + VMSMG++ E Q +IWRG ++ +AI+Q+L
Sbjct: 150 ADVI---MDPSGKKLIPLKA------FGVSVMSMGLLYDEGQSLIWRGPMLMRAIEQMLS 200
Query: 143 DVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEV 202
D+ WG LD +++D PPGTGD LT+ Q++ L A I VTTPQ V+L D ++++M KK+ +
Sbjct: 201 DIIWGDLDVLVVDMPPGTGDAQLTLAQAVPLSAGITVTTPQIVSLDDAKRSLDMFKKLHI 260
Query: 203 PYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPI 262
P +VENM +C HC + +IFG L E L K+P++ K R D G PI
Sbjct: 261 PIAGIVENMGSFVCEHCKKESEIFGSNSMSGLLEAYNTQILAKLPLEPKVRLGGDKGEPI 320
Query: 263 VLYGDTP-AAKAFMEIAEKL---VNKLKEMKGDEKKE 295
V+ T +AK F ++A+ L ++K++ K + K+
Sbjct: 321 VISHPTSVSAKIFEKMAKDLSAFLDKVEREKLADNKD 357
>pir||E82249 mrp protein VC1037 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9655501|gb|AAF94196.1| (AE004185) mrp
protein [Vibrio cholerae]
Length = 382
Score = 209 bits (527), Expect = 3e-53
Identities = 116/269 (43%), Positives = 161/269 (59%), Gaps = 11/269 (4%)
Query: 18 LTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKM 77
L R+ K K +AV SGKGGVGKST AVNL A+AK G VG+LDADI+GP+V M
Sbjct: 107 LETRVSAAVKGVKNIIAVTSGKGGVGKSTTAVNLALAIAKSGGKVGLLDADIYGPSVPLM 166
Query: 78 LGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAI 137
LG K + D+ + I + I S+G +V E IWRG + +KA+
Sbjct: 167 LGKTKAKPVVR--DNKWMQPI--------EAHGIATHSIGYLVDEADAAIWRGPMASKAL 216
Query: 138 KQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMM 197
QLL + +W LD+++ID PPGTGD LT+ Q I + A+IVTTPQ++AL D K M
Sbjct: 217 AQLLNETEWPDLDYLVIDMPPGTGDIQLTLAQQIPVTGAVIVTTPQDLALADARKGAAMF 276
Query: 198 KKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASD 257
K++VP I +VENMSY IC HCG K IFG GG + LA + G+ L +IP+ + RE D
Sbjct: 277 AKVDVPVIGLVENMSYHICSHCGEKEHIFGVGGAQTLAAEFGLSLLAQIPLHIDMREDID 336
Query: 258 LGIP-IVLYGDTPAAKAFMEIAEKLVNKL 285
G+P +V ++ + ++ +A+++ L
Sbjct: 337 AGVPTVVARPNSEHTERYLALAQRVCASL 365
>pir||S11948 mrp protein - Escherichia coli >gi|42017|emb|CAA39316.1| (X55791)
put. ATPase [Escherichia coli]
Length = 369
Score = 207 bits (522), Expect = 1e-52
Identities = 107/232 (46%), Positives = 149/232 (64%), Gaps = 10/232 (4%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+AV SGKGGVGKS+ AVNL ALA G VGILDADI+GP++ MLG E + + D
Sbjct: 110 IAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSP--DG 167
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
H MA M + S+G +V +D ++WRG + +KA+ Q+L + W LD++
Sbjct: 168 TH------MAPIMSH--GLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYL 219
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
++D PPGTGD LT+ Q+I + A++VTTPQ++AL+D K + M +K+EVP + +VENMS
Sbjct: 220 VLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMS 279
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVL 264
IC +CG+ IFG GG EKLAEK LG++P+ + RE D G P V+
Sbjct: 280 VHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVI 331
>sp|P21590|MRP_ECOLI MRP PROTEIN >gi|7446818|pir||H64978 probable ATPase mrp -
Escherichia coli >gi|405896|gb|AAA60527.1| (U00007) mrp
[Escherichia coli] >gi|1788431|gb|AAC75174.1| (AE000300)
putative ATPase [Escherichia coli K12]
>gi|744212|prf||2014253F ATPase [Escherichia coli]
Length = 379
Score = 207 bits (522), Expect = 1e-52
Identities = 107/232 (46%), Positives = 149/232 (64%), Gaps = 10/232 (4%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+AV SGKGGVGKS+ AVNL ALA G VGILDADI+GP++ MLG E + + D
Sbjct: 120 IAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSP--DG 177
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
H MA M + S+G +V +D ++WRG + +KA+ Q+L + W LD++
Sbjct: 178 TH------MAPIMSH--GLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYL 229
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
++D PPGTGD LT+ Q+I + A++VTTPQ++AL+D K + M +K+EVP + +VENMS
Sbjct: 230 VLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMS 289
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVL 264
IC +CG+ IFG GG EKLAEK LG++P+ + RE D G P V+
Sbjct: 290 VHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVI 341
>sp|P72190|YCAB_PSEFR HYPOTHETICAL 30.2 KD PROTEIN IN CAPB 3'REGION
>gi|1513082|gb|AAC45998.1| (U62986) ATPase [Pseudomonas
fragi]
Length = 287
Score = 207 bits (521), Expect = 1e-52
Identities = 109/247 (44%), Positives = 156/247 (63%), Gaps = 10/247 (4%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
VAV SGKGGVGKST A NL ALA+ G VGILDADI+GP+ M G+ E + D
Sbjct: 42 VAVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQGVMFGIA-EGTRPKIRDQ 100
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
F I + ++VMSM + ++ P++WRG +V+ A+ QL+ W LD++
Sbjct: 101 KWFVPI--------EAHGVEVMSMAFLTDDNTPMVWRGPMVSGALLQLVTQTAWNDLDYL 152
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
+ID PPGTGD LT+ Q + + ++IVTTPQ++ALLD K V M +K+ +P + VVENM+
Sbjct: 153 VIDMPPGTGDIQLTLAQKVPVAGSVIVTTPQDLALLDARKGVEMFRKVNIPVLGVVENMA 212
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYG-DTPAA 271
IC +CG+ +FGEGGGEKLA + GV+ L +P+ ++ RE +D G P + ++P A
Sbjct: 213 VHICSNCGHAEHLFGEGGGEKLATQYGVEVLASLPLAMEIREQADNGKPTAIADPNSPIA 272
Query: 272 KAFMEIA 278
+ E+A
Sbjct: 273 LIYQELA 279
>pir||E72780 probable nucleotide-binding protein APE0230 - Aeropyrum pernix
(strain K1) >gi|5103622|dbj|BAA79143.1| (AP000058) 283aa
long hypothetical nucleotide-binding protein [Aeropyrum
pernix]
Length = 283
Score = 206 bits (518), Expect = 3e-52
Identities = 116/272 (42%), Positives = 174/272 (63%), Gaps = 14/272 (5%)
Query: 21 RIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGV 80
+I ++ +YK+AV+S KGGVGKS V +L AALA G VG+ DADI GP+V KMLG+
Sbjct: 10 KIVRNMRRIRYKIAVISTKGGVGKSFVTASLAAALAAEGRRVGVFDADISGPSVHKMLGL 69
Query: 81 EKEEIYAEKFDDGHFEMIPPMADFMGQVTP-IKVMSMGMMVPEDQ-PIIWRGALVTKAIK 138
+ + D + P+ +V P IKV S+G+++P D+ P+IWRGA+ T AI+
Sbjct: 70 QTGMGMPSQLDG----TVKPV-----EVPPGIKVASIGLLLPMDEVPLIWRGAIKTSAIR 120
Query: 139 QLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSI-QLDAAIIVTTPQEVALLDTGKAVNMM 197
+LL V WG LD+++ID PPGTGDE+LT+ Q I + ++VT P E+A KAV+
Sbjct: 121 ELLAYVDWGELDYLLIDLPPGTGDEVLTITQIIPNITGFLVVTIPSEIAKSVVKKAVSFA 180
Query: 198 KKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASD 257
K++E P I +VENMSY C G+ IFG G E++A + G++ LGKIPID RE++D
Sbjct: 181 KRIEAPVIGIVENMSYFRCSD-GSIHYIFGRGAAEEIASQYGIELLGKIPIDPAIRESND 239
Query: 258 LGIPIVLYG-DTPAAKAFMEIAEKLVNKLKEM 288
G L ++ A++ F++IA +++ ++++
Sbjct: 240 KGKIFFLENPESEASREFLKIARRIIEIVEKL 271
>pir||D81256 probable ATP/GTP-binding protein (mrp protein homolog) Cj1606c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6969023|emb|CAB73594.1| (AL139079) putative
ATP/GTP-binding protein (mrp protein homolog)
[Campylobacter jejuni]
Length = 368
Score = 205 bits (517), Expect = 4e-52
Identities = 108/262 (41%), Positives = 166/262 (63%), Gaps = 16/262 (6%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKE--EIYAEKF 90
+ V SGKGGVGKST VNL ++AKMG VGILDADI+GPN+ +MLG K E+ ++
Sbjct: 100 IMVSSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQR- 158
Query: 91 DDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLD 150
+ P+ + +MSMG+++ E Q ++WRGA++ KAI+QLL DV W LD
Sbjct: 159 -------LKPILTH-----GVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELD 206
Query: 151 FMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVEN 210
+ +D PPGTGD +T QSI + A + V+TPQ V+L D+ +A++M K+ +P V+EN
Sbjct: 207 VLFLDMPPGTGDAQITSAQSIPIAAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIEN 266
Query: 211 MSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLY-GDTP 269
MS +CP G + DIFG+G E +A+ + L +IPI++ RE D G P+ Y ++
Sbjct: 267 MSGFLCPDNGKEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESV 326
Query: 270 AAKAFMEIAEKLVNKLKEMKGD 291
++K ++ AEK+ + ++++ +
Sbjct: 327 SSKRYLMAAEKIWSFIEKINNE 348
>pir||B83210 conserved hypothetical protein PA3481 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949626|gb|AAG06869.1|AE004769_2 (AE004769)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 364
Score = 205 bits (517), Expect = 4e-52
Identities = 108/247 (43%), Positives = 155/247 (62%), Gaps = 10/247 (4%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
VAV SGKGGVGKST A NL ALA+ G VGILDADI+GP+ M G+ E + +
Sbjct: 102 VAVASGKGGVGKSTTAANLALALAREGARVGILDADIYGPSQGIMFGLP-EGTRPKVREQ 160
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
FE + + ++VMSM + + P++WRG +V+ A+ QL+ W +LD++
Sbjct: 161 KWFEPL--------EAHGVQVMSMAFLTDDSTPVVWRGPMVSGALIQLITQTAWDNLDYL 212
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
++D PPGTGD LT+ Q + + A+IVTTPQ++ALLD K V M +K+ +P + VVENM+
Sbjct: 213 VVDMPPGTGDIQLTLAQKVPVAGAVIVTTPQDLALLDAKKGVEMFRKVNIPVLGVVENMA 272
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYG-DTPAA 271
IC +CG+ +FGEGGGEKLA + GV+ L +P+ + R +D G P V+ ++ A
Sbjct: 273 VHICSNCGHAEHLFGEGGGEKLAAQFGVELLASMPLSIAIRTQADSGRPTVIADPESQLA 332
Query: 272 KAFMEIA 278
+ EIA
Sbjct: 333 MLYQEIA 339
>emb|CAC01353.1| (AL390975) putative ATP-binding protein [Streptomyces coelicolor
A3(2)]
Length = 377
Score = 202 bits (509), Expect = 4e-51
Identities = 110/264 (41%), Positives = 157/264 (58%), Gaps = 19/264 (7%)
Query: 34 AVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDDG 93
AV SGKGGVGKS+V VNL A++A G VG++DADI+G +V +MLG + E
Sbjct: 115 AVASGKGGVGKSSVTVNLAASMAADGLKVGVVDADIYGHSVPRMLGADGRPTQVENM--- 171
Query: 94 HFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFMI 153
++PP A +KV+S+GM P + P++WRG ++ +A++Q L DV WG LD ++
Sbjct: 172 ---IMPPSAH------GVKVISIGMFTPGNAPVVWRGPMLHRALQQFLADVYWGDLDVLL 222
Query: 154 IDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSY 213
+D PPGTGD ++V Q + ++VTTPQ+ A +A + + + VVENMS
Sbjct: 223 LDLPPGTGDIAISVAQLVPNAEILVVTTPQQAAAEVAERAGAIAVQTHQKIVGVVENMSG 282
Query: 214 LICPHCGNKIDIFGEGGGEKLAE------KEGVDFLGKIPIDLKAREASDLGIPIVLYG- 266
L CPHCG +D+FG GGG+ +A+ V LG IPID++ RE D G P+VL
Sbjct: 283 LPCPHCGEMVDVFGTGGGQTVADGLTRTTGASVPVLGAIPIDVRLREGGDEGKPVVLSDP 342
Query: 267 DTPAAKAFMEIAEKLVNKLKEMKG 290
D+PA A IA KL + + + G
Sbjct: 343 DSPAGAALRSIAGKLGGRQRGLSG 366
>gi|11499850 nucleotide-binding protein [Archaeoglobus fulgidus]
>gi|7446826|pir||E69533 nucleotide-binding protein
homolog - Archaeoglobus fulgidus
>gi|2648251|gb|AAB88984.1| (AE000948) nucleotide-binding
protein [Archaeoglobus fulgidus]
Length = 254
Score = 199 bits (502), Expect = 2e-50
Identities = 104/239 (43%), Positives = 153/239 (63%), Gaps = 10/239 (4%)
Query: 22 IKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVE 81
IKE+ K +++AV+SGKGGVGKSTV L AK G VGILDAD GP++ + G+E
Sbjct: 10 IKERLDKIGFRIAVMSGKGGVGKSTVTALLAVHYAKQGKKVGILDADFLGPSIPHLFGLE 69
Query: 82 KEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGALVTKAIKQL 140
K ++ D+G + P + +G IKVMS+ ++P+ + P+IWRG L+ I++
Sbjct: 70 KGKVAVS--DEG---LEPVLTQRLG----IKVMSIQFLLPKRETPVIWRGPLIAGMIREF 120
Query: 141 LGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKM 200
LG V WG LD+++ID PPGTGD LTV+Q + + A+IV+TPQE+ KA+ M ++
Sbjct: 121 LGRVAWGELDYLLIDLPPGTGDAPLTVMQDAKPNGAVIVSTPQELTAAVVEKAITMAEQT 180
Query: 201 EVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLG 259
+ + +VENM+Y CP+CG + +FGEG +LA K ++F+ +IPID + SDLG
Sbjct: 181 KTAVLGIVENMAYFECPNCGERTYLFGEGKASELARKYKIEFITEIPIDSDLLKLSDLG 239
>pir||T39000 probable nucleotide binding protein - fission yeast
(Schizosaccharomyces pombe) >gi|4056552|emb|CAA22587.1|
(AL034583) putative nucleotide binding protein
[Schizosaccharomyces pombe]
Length = 317
Score = 198 bits (497), Expect = 9e-50
Identities = 112/282 (39%), Positives = 169/282 (59%), Gaps = 18/282 (6%)
Query: 14 GADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALA-KMGYFVGILDADIHGP 72
G DP + E+ K+ K+K+ VLSGKGGVGKST + L L+ + +G++D DI GP
Sbjct: 44 GEDPDLPLVVERLKEIKHKILVLSGKGGVGKSTFSSQLAWGLSLEEDKQIGLMDVDICGP 103
Query: 73 NVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVP-EDQPIIWRGA 131
++ +++GVEKEE + + P +A VMS+G ++P ED +IWRG
Sbjct: 104 SIPRIMGVEKEEAHQSSKGWSPIYVCPNLA----------VMSIGFLLPSEDSSVIWRGP 153
Query: 132 LVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQ---LDAAIIVTTPQEVALL 188
IKQ + DV W +LD++I+D PPGT DE L++VQ + +D A++VTTPQEVAL
Sbjct: 154 KKNGLIKQFIKDVNWENLDYLIVDTPPGTSDEHLSLVQFFKNSGIDGAVVVTTPQEVALQ 213
Query: 189 DTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF--GEGGGEKLAEKEGVDFLGKI 246
D K ++ +K +P + +VENMS +CP C K +IF GGGE LA++ G+ FLGKI
Sbjct: 214 DVRKEIDFCRKASIPILGLVENMSGFVCPSCKGKSNIFTITTGGGEALAKEMGLPFLGKI 273
Query: 247 PIDLKAREASDLGIPIV-LYGDTPAAKAFMEIAEKLVNKLKE 287
P+D + D G + ++PA++ ++I K+ L++
Sbjct: 274 PLDPLIARSCDFGKSFIDECPESPASEIIIDIINKIDESLQK 315
>gi|11499959 nucleotide-binding protein [Archaeoglobus fulgidus]
>gi|7446827|pir||F69547 nucleotide-binding protein
homolog - Archaeoglobus fulgidus
>gi|2650714|gb|AAB91283.1| (AE001112) nucleotide-binding
protein [Archaeoglobus fulgidus]
Length = 254
Score = 197 bits (495), Expect = 2e-49
Identities = 105/241 (43%), Positives = 148/241 (60%), Gaps = 10/241 (4%)
Query: 20 QRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLG 79
+ IKE+ K K ++AV+SGKGGVGKSTV L A+ G VGILDAD GP++ + G
Sbjct: 8 EEIKERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFG 67
Query: 80 VEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVP-EDQPIIWRGALVTKAIK 138
+ I E + P+ + Q IKVMSM ++P E+ P+IWRG L+ I+
Sbjct: 68 LRNARIAVSA------EGLEPV---LTQKYGIKVMSMQFLLPKENTPVIWRGPLIAGMIR 118
Query: 139 QLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMK 198
+ LG V WG LD ++ID PPGTGD LTV+Q + ++V+TPQE+ + KA+NM +
Sbjct: 119 EFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAE 178
Query: 199 KMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDL 258
+ + +VENMSY +CP+CG+K IFGEG GE LA+K + F IPI+ + + +D
Sbjct: 179 ETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADS 238
Query: 259 G 259
G
Sbjct: 239 G 239
>dbj|BAB08742.1| (AB017063) nucleotide-binding protein [Arabidopsis thaliana]
Length = 317
Score = 190 bits (479), Expect = 1e-47
Identities = 112/255 (43%), Positives = 155/255 (59%), Gaps = 20/255 (7%)
Query: 14 GADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPN 73
G DP I E+ K+K+ VLSGKGGVGKST + L+ ALA M + VG++D DI GP+
Sbjct: 43 GPDPDLVAIAERMSTVKHKILVLSGKGGVGKSTFSAQLSFALAGMDHQVGLMDIDICGPS 102
Query: 74 VAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVP-EDQPIIWRGAL 132
+ KMLG+E +EI+ + D +G VMS+G M+P D+ +IWRG
Sbjct: 103 IPKMLGLEGQEIHQSNLGWSPVY----VEDNLG------VMSIGFMLPNSDEAVIWRGPR 152
Query: 133 VTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSI---QLDAAIIVTTPQEVALLD 189
IKQ L DV WG +D++++D PPGT DE +++VQ + +D AIIVTTPQEV+L+D
Sbjct: 153 KNGLIKQFLKDVYWGEIDYLVVDAPPGTSDEHISIVQYLLPTGIDGAIIVTTPQEVSLID 212
Query: 190 TGKAVNMMKKMEVPYIAVVENMSYLICP-----HCGNKIDIFGEGGGEKLAEKEGVDFLG 244
K V+ KK+ VP + VVENMS L P C D G GG E++ + GV FLG
Sbjct: 213 VRKEVSFCKKVGVPVLGVVENMSGLSQPLLDIVACSEVFDSSG-GGAERMCREMGVPFLG 271
Query: 245 KIPIDLKAREASDLG 259
K+P+D + +A++ G
Sbjct: 272 KVPMDPQLCKAAEQG 286
>gi|6322188 Yil003wp [Saccharomyces cerevisiae] >gi|731773|sp|P40558|YIA3_YEAST
HYPOTHETICAL 31.9 KD PROTEIN IN BET1-PAN1 INTERGENIC
REGION >gi|1362387|pir||S58704 probable membrane protein
YIL003w - yeast (Saccharomyces cerevisiae)
Length = 293
Score = 190 bits (478), Expect = 2e-47
Identities = 98/261 (37%), Positives = 149/261 (56%), Gaps = 15/261 (5%)
Query: 30 KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEK 89
K+ + +LSGKGGVGKS+V L MG+ VG+LD D+ GP++ +M G+E E IY
Sbjct: 17 KHIILILSGKGGVGKSSVTTQTALTLCSMGFKVGVLDIDLTGPSLPRMFGLENESIYQGP 76
Query: 90 FDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGALVTKAIKQLLGDVKWGS 148
E P+ + V+S+G ++ + +IWRG T IKQ + DV WG
Sbjct: 77 ------EGWQPVKVETNSTGSLSVISLGFLLGDRGNSVIWRGPKKTSMIKQFISDVAWGE 130
Query: 149 LDFMIIDFPPGTGDEILTVVQSIQL---DAAIIVTTPQEVALLDTGKAVNMMKKMEVPYI 205
LD+++ID PPGT DE +++ + ++ D I+VTTPQ VA D K +N KK+++ +
Sbjct: 131 LDYLLIDTPPGTSDEHISIAEELRYSKPDGGIVVTTPQSVATADVKKEINFCKKVDLKIL 190
Query: 206 AVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLK-----AREASDLGI 260
++ENMS +CPHC +IF GGG++L+E+ V +LG +PID K + S
Sbjct: 191 GIIENMSGFVCPHCAECTNIFSSGGGKRLSEQFSVPYLGNVPIDPKFVEMIENQVSSKKT 250
Query: 261 PIVLYGDTPAAKAFMEIAEKL 281
+ +Y ++ F EI +KL
Sbjct: 251 LVEMYRESSLCPIFEEIMKKL 271
>sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|11279019|pir||T45199 probable mrp protein
[imported] - Mycobacterium leprae
>gi|699143|gb|AAA62909.1| (U15180) MRP protein
[Mycobacterium leprae]
Length = 435
Score = 190 bits (477), Expect = 2e-47
Identities = 107/263 (40%), Positives = 157/263 (59%), Gaps = 20/263 (7%)
Query: 35 VLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDDGH 94
V SGKGGVGKSTV VNL A+A G VG+LDADIHG ++ +M+G + I E
Sbjct: 176 VASGKGGVGKSTVTVNLATAIAARGLAVGVLDADIHGHSIPRMMGSNQRPIQLESM---- 231
Query: 95 FEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFMII 154
++PP+ V +KV+S+G + P+IWRG ++ +A++Q L DV WG LD +++
Sbjct: 232 --ILPPI------VHEVKVISIGQFTEGNTPVIWRGPMLHRALQQFLSDVYWGDLDVLML 283
Query: 155 DFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYL 214
D PPGTGD ++V Q I ++VTTPQ A +A ++ + + VVENMS L
Sbjct: 284 DLPPGTGDIAISVAQLIPNAEILVVTTPQLAAAEVAERAGSIALQTRQRIVGVVENMSGL 343
Query: 215 ICPHCGNKIDIFGEGGGEKLAEK------EGVDFLGKIPIDLKAREASDLGIPIVL-YGD 267
+ P G+++ +FGEGGG+++AE+ V LG+IP+D A D GIPIVL D
Sbjct: 344 MMPD-GSRLQVFGEGGGQQVAERLSRAVGTDVPLLGQIPLDPALVAAGDSGIPIVLNASD 402
Query: 268 TPAAKAFMEIAEKLVNKLKEMKG 290
+P K + IA+ L ++ + + G
Sbjct: 403 SPVGKELLRIADGLSSRQRRLAG 425
>gb|AAF57258.1| (AE003783) CG3262 gene product [Drosophila melanogaster]
Length = 293
Score = 187 bits (470), Expect = 1e-46
Identities = 102/263 (38%), Positives = 153/263 (57%), Gaps = 17/263 (6%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+ V SGKGGVGKSTVAVN +LAK+G VG+LD DI GP + ++ V E + +K
Sbjct: 42 IVVASGKGGVGKSTVAVNFACSLAKLGKRVGLLDGDIFGPTIPLLMNVHGEPVVNDKN-- 99
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
MIPP Q +K +SMGM+ P + +IWRG LV AI++LL WG LD +
Sbjct: 100 ---LMIPP------QNYNVKCLSMGMLTPVETSVIWRGPLVMSAIQRLLKGTDWGLLDVL 150
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
+ID PPGTGD L++ Q + I+VTTP A+ T K +M +K+ VP VVENM
Sbjct: 151 VIDTPPGTGDVHLSLSQHAPITGVILVTTPHTAAVQVTLKGASMYEKLNVPIFGVVENMK 210
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVL-YGDTPAA 271
Y IC +C +++ F + L K L +P+D + ++++ G+P+V+ Y D+ +
Sbjct: 211 YTICQNCNQRLEFFKDSRISSLPRK-----LISLPLDSRIADSNESGVPVVIKYPDSKYS 265
Query: 272 KAFMEIAEKLVNKLKEMKGDEKK 294
F ++AE++ L E + ++ +
Sbjct: 266 YLFTQLAEEITQILNEQRCNQNQ 288
>gi|6754906 nucleotide binding protein 1 [Mus musculus]
>gi|6018193|gb|AAF01786.1|AF114170_1 (AF114170)
nucleotide-binding protein long form [Mus musculus]
Length = 320
Score = 187 bits (469), Expect = 2e-46
Identities = 111/278 (39%), Positives = 162/278 (57%), Gaps = 18/278 (6%)
Query: 12 GLGADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYF-VGILDADIH 70
G DP + I+EK K ++K+ VLSGKGGVGKST + +L LA+ G V +LD DI
Sbjct: 36 GAAPDPAVEEIREKMKTVRHKLLVLSGKGGVGKSTFSAHLAHGLAEDGDTQVALLDIDIC 95
Query: 71 GPNVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWR 129
GP++ K++G+E E+++ G + D +G VMS+G ++ D +IWR
Sbjct: 96 GPSIPKIMGLEGEQVH----QSGSGWSPVYVDDNLG------VMSVGFLLSSPDDAVIWR 145
Query: 130 GALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSI---QLDAAIIVTTPQEVA 186
G IKQ L DV WG +D++I+D PPGT DE L+VVQ + +D A+I+TTPQEVA
Sbjct: 146 GPKKNGMIKQFLRDVDWGDVDYLIVDTPPGTSDEHLSVVQYLAAAHIDGAVILTTPQEVA 205
Query: 187 LLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF--GEGGGEKLAEKEGVDFLG 244
L D K ++ K+++P I VVENMS ICP C + IF GG E + + + LG
Sbjct: 206 LQDVRKEISFCHKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAEAMCQDLRIPLLG 265
Query: 245 KIPIDLKAREASDLGIPIVLYG-DTPAAKAFMEIAEKL 281
K+P+D ++ D G + D+PA A+ I +++
Sbjct: 266 KVPLDPHIGKSCDKGQSFFVEAPDSPATAAYRSIIQRI 303
>gb|AAF51623.1| (AE003591) CG4858 gene product [Drosophila melanogaster]
Length = 260
Score = 185 bits (466), Expect = 4e-46
Identities = 112/265 (42%), Positives = 154/265 (57%), Gaps = 15/265 (5%)
Query: 28 KWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYA 87
K K + VLSGKGGVGKSTV+ L+ AL K G+ VG+LD D+ GP+V +LG+E +I+
Sbjct: 4 KVKNVIVVLSGKGGVGKSTVSTQLSLALRKNGFKVGLLDIDLCGPSVPYLLGLEGRDIF- 62
Query: 88 EKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGALVTKAIKQLLGDVKW 146
+ DDG +P D + + VMS+G ++ + P+IWRG T I+Q L DV+W
Sbjct: 63 -QCDDG---WVPVYTD---ESQTLAVMSIGFLLKNREDPVIWRGPKKTMMIRQFLTDVRW 115
Query: 147 GSLDFMIIDFPPGTGDEILTVVQSIQ---LDAAIIVTTPQEVALLDTGKAVNMMKKMEVP 203
LD++IID PPGT DE +TV++ ++ AIIVTTPQEVAL D K + KK +
Sbjct: 116 DELDYLIIDTPPGTSDEHITVMECLKEVGCHGAIIVTTPQEVALDDVRKEITFCKKTGIN 175
Query: 204 YIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIV 263
+ +VENMS +CPHC + +IF GG LA V LG +PID R G
Sbjct: 176 ILGIVENMSGFVCPHCTSCTNIFSSNGGVSLATYAQVPHLGTLPID--PRVGILAGTTTS 233
Query: 264 LYGDTPAAKAFMEIAEKLVNKLKEM 288
+ + P + E+ +V KLK M
Sbjct: 234 VLDELPDSTT-AEVLTHIVEKLKTM 257
>pir||T39094 WD domain, G-beta repeat protein - fission yeast
(Schizosaccharomyces pombe) >gi|5834803|emb|CAB55281.1|
(AL117212) WD domian, G-beta repeat protein
[Schizosaccharomyces pombe]
Length = 608
Score = 185 bits (464), Expect = 7e-46
Identities = 107/278 (38%), Positives = 154/278 (54%), Gaps = 26/278 (9%)
Query: 28 KWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYF-----VGILDADIHGPNVAKMLGVEK 82
K ++ + VLSGKGGVGKS+V L +L + GILD D+ GP++ +M G +
Sbjct: 3 KVQHVILVLSGKGGVGKSSVTTQLALSLHDSKVYSRPLKTGILDIDLTGPSIPRMFGKDA 62
Query: 83 EEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMG-MMVPEDQPIIWRGALVTKAIKQLL 141
E + G +P D + I +MS+G ++ ++ ++WRG I+Q +
Sbjct: 63 ERNRIHQSSAG---WVPVYTD---ETKEIGLMSLGFLLTSKNDSVVWRGPKKAAMIRQFI 116
Query: 142 GDVKWGSLDFMIIDFPPGTGDEILTVVQS----------IQLDAAIIVTTPQEVALLDTG 191
DV WG LDF+IID PPGTGDE LT+V+S + +D A+IVTTPQ +A LD
Sbjct: 117 SDVSWGELDFLIIDTPPGTGDEHLTIVESLLSETSTVRDVPIDGAVIVTTPQGIATLDVQ 176
Query: 192 KAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLK 251
K ++ KK + + +VENMS ICPHC + +IF GGG L+EK + FLG +PID K
Sbjct: 177 KEIDFCKKASIKILGIVENMSGYICPHCADCTNIFSSGGGLTLSEKYKLPFLGSVPIDPK 236
Query: 252 AREASDLGIP----IVLYGDTPAAKAFMEIAEKLVNKL 285
E + P + LY T +K F I + +N+L
Sbjct: 237 FGEMIENLTPDSNIVHLYSKTEMSKKFSFITNEFLNQL 274
>emb|CAC04440.1| (AL391572) related to nucleotide-binding protein [Neurospora
crassa]
Length = 331
Score = 183 bits (461), Expect = 2e-45
Identities = 97/253 (38%), Positives = 153/253 (60%), Gaps = 16/253 (6%)
Query: 16 DPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVA 75
+PL ++IK +K +AV S KGGVGKST+A NL +L+++GY GILD D+ GP++
Sbjct: 58 NPLKRKIKNVDKV----IAVSSAKGGVGKSTIAANLALSLSRLGYTTGILDTDLFGPSIP 113
Query: 76 KMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMV-PEDQPIIWRGALVT 134
+ + + + H +++P + +K MS+G ++ ED ++WRG ++
Sbjct: 114 TLFNLSSPSLSPSL--NPHNQLLPLTS------YGVKTMSIGYLLGSEDSALVWRGPMLL 165
Query: 135 KAIKQLLGDVKWG--SLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGK 192
KAI+QLL +V W SLD +++D PPGTGD L++ Q + +D A+IVTTP +A+ D K
Sbjct: 166 KAIQQLLHEVDWSHPSLDVLVLDLPPGTGDTQLSIAQQVVVDGAVIVTTPHTLAIKDAVK 225
Query: 193 AVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF-GEGGGEKLAEKEGVDFLGKIPIDLK 251
VNM +K+++P + VV+NMS CP CG + +F G G K+ E+ ++FLG +P+
Sbjct: 226 GVNMFRKVDIPILGVVQNMSVFCCPGCGKETHVFGGTEGVTKVCEEMDMEFLGDVPLHPS 285
Query: 252 AREASDLGIPIVL 264
E G P V+
Sbjct: 286 IGEDGGRGKPTVV 298
>gi|11431846 nucleotide binding protein 1 (E.coli MinD like) [Homo sapiens]
Length = 320
Score = 183 bits (460), Expect = 2e-45
Identities = 112/280 (40%), Positives = 163/280 (58%), Gaps = 20/280 (7%)
Query: 12 GLGADPLT--QRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAK-MGYFVGILDAD 68
G GA P T + IKEK K K+K+ VLSGKGGVGKST + +L LA+ + +LD D
Sbjct: 34 GAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDID 93
Query: 69 IHGPNVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPII 127
I GP++ K++G+E E+++ G + D +G VMS+G ++ D +I
Sbjct: 94 ICGPSIPKIMGLEGEQVH----QSGSGWSPVYVEDNLG------VMSVGFLLSSPDDAVI 143
Query: 128 WRGALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSI---QLDAAIIVTTPQE 184
WRG IKQ L DV WG +D++I+D PPGT DE L+VV+ + +D A+I+TTPQE
Sbjct: 144 WRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQE 203
Query: 185 VALLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF--GEGGGEKLAEKEGVDF 242
V+L D K +N +K+++P I VVENMS ICP C + IF GG E + + V
Sbjct: 204 VSLQDVRKEINFCRKVKLPIIGVVENMSGFICPKCKKESQIFPPTTGGAELMCQDLEVPL 263
Query: 243 LGKIPIDLKAREASDLGIPIVLYG-DTPAAKAFMEIAEKL 281
LG++P+D + D G + D+PA A+ I +++
Sbjct: 264 LGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQRI 303
>gi|4505337 nucleotide binding protein 1 (E.coli MinD like); nucleotide binding
protein (e.coli MinD like) [Homo sapiens]
>gi|1709232|sp|P53384|NBP_HUMAN NUCLEOTIDE-BINDING
PROTEIN (NBP) >gi|1082661|pir||JC4010 nucleotide-binding
protein - human >gi|515644|gb|AAA61932.1| (U01833)
putative nucleotide-binding protein [Homo sapiens]
Length = 320
Score = 182 bits (457), Expect = 5e-45
Identities = 111/280 (39%), Positives = 163/280 (57%), Gaps = 20/280 (7%)
Query: 12 GLGADPLT--QRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAK-MGYFVGILDAD 68
G GA P T + IKEK K K+K+ VLSGKGGVGKST + +L LA+ + +LD D
Sbjct: 34 GAGATPDTAIEEIKEKMKTVKHKILVLSGKGGVGKSTFSAHLAHGLAEDENTQIALLDID 93
Query: 69 IHGPNVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPII 127
I GP++ K++G+E E+++ G + D +G VMS+G ++ D +I
Sbjct: 94 ICGPSIPKIMGLEGEQVH----QSGSGWSPVYVEDNLG------VMSVGFLLSSPDDAVI 143
Query: 128 WRGALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSI---QLDAAIIVTTPQE 184
WRG IKQ L DV WG +D++I+D PPGT DE L+VV+ + +D A+I+TTPQE
Sbjct: 144 WRGPKKNGMIKQFLRDVDWGEVDYLIVDTPPGTSDEHLSVVRYLATAHIDGAVIITTPQE 203
Query: 185 VALLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF--GEGGGEKLAEKEGVDF 242
++L D K +N +K+++P I VVENMS ICP C + IF GG E + + V
Sbjct: 204 LSLQDVRKEINFCRKVKLPIIGVVENMSPFICPKCKKESQIFPPTTGGAELMCQDLEVPL 263
Query: 243 LGKIPIDLKAREASDLGIPIVLYG-DTPAAKAFMEIAEKL 281
LG++P+D + D G + D+PA A+ I +++
Sbjct: 264 LGRVPLDPLIGKNCDKGQSFFIDAPDSPATLAYRSIIQRI 303
>gi|6321347 35 kDa nucleotide binding protein; Nbp35p [Saccharomyces
cerevisiae] >gi|1709228|sp|P52920|NB35_YEAST NBP35
PROTEIN >gi|2132358|pir||S64098 nucleotide-binding
protein NBP35 - yeast (Saccharomyces cerevisiae)
>gi|1322621|emb|CAA96797.1| (Z72613) ORF YGL091c
[Saccharomyces cerevisiae]
Length = 328
Score = 178 bits (447), Expect = 7e-44
Identities = 108/276 (39%), Positives = 158/276 (57%), Gaps = 18/276 (6%)
Query: 14 GADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAAL-AKMGYFVGILDADIHGP 72
G DP I + ++K+ VLSGKGGVGKST A L+ AL A VG +D DI GP
Sbjct: 56 GPDPDIPLITDNLSGIEHKILVLSGKGGVGKSTFAAMLSWALSADEDLQVGAMDLDICGP 115
Query: 73 NVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQP-IIWRGA 131
++ MLG KE ++ + +A MS+ M+PED IIWRG+
Sbjct: 116 SLPHMLGCIKETVHESNSGWTPVYVTDNLA----------TMSIQYMLPEDDSAIIWRGS 165
Query: 132 LVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQ---LDAAIIVTTPQEVALL 188
IK+ L DV W LD+++ID PPGT DE +++ + ++ +D A++VTTPQEVALL
Sbjct: 166 KKNLLIKKFLKDVDWDKLDYLVIDTPPGTSDEHISINKYMRESGIDGALVVTTPQEVALL 225
Query: 189 DTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF--GEGGGEKLAEKEGVDFLGKI 246
D K ++ KK + + +VENMS +CP+C + IF GGGE L ++ G+ FLG +
Sbjct: 226 DVRKEIDFCKKAGINILGLVENMSGFVCPNCKGESQIFKATTGGGEALCKELGIKFLGSV 285
Query: 247 PIDLKAREASDLGIPIV-LYGDTPAAKAFMEIAEKL 281
P+D + ++ D+G + Y D+PA+ A + + E L
Sbjct: 286 PLDPRIGKSCDMGESFLDNYPDSPASSAVLNVVEAL 321
>sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|7446833|pir||H70508 probable mrp protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|3261828|emb|CAB10925.1| (Z98260) mrp [Mycobacterium
tuberculosis]
Length = 390
Score = 176 bits (443), Expect = 2e-43
Identities = 102/264 (38%), Positives = 148/264 (55%), Gaps = 20/264 (7%)
Query: 34 AVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDDG 93
AV SGKGGVGKSTV VNL AA+A G +G+LDADIHG ++ +M+G E
Sbjct: 130 AVASGKGGVGKSTVTVNLAAAMAVRGLSIGVLDADIHGHSIPRMMGTTDRPTQVESM--- 186
Query: 94 HFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFMI 153
++PP+A +KV+S+ + P++WRG ++ +A++Q L DV WG LD ++
Sbjct: 187 ---ILPPIAH------QVKVISIAQFTQGNTPVVWRGPMLHRALQQFLADVYWGDLDVLL 237
Query: 154 IDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSY 213
+D PPGTGD ++V Q I ++VTTPQ A +A ++ + + VVENMS
Sbjct: 238 LDLPPGTGDVAISVAQLIPNAELLVVTTPQLAAAEVAERAGSIALQTRQRIVGVVENMSG 297
Query: 214 LICPHCGNKIDIFGEGGGEKLAEK------EGVDFLGKIPIDLKAREASDLGIPIVLYG- 266
L P G + +FGEGGG +AE+ V LG+IP+D A D G+P+VL
Sbjct: 298 LTLPD-GTTMQVFGEGGGRLVAERLSRAVGADVPLLGQIPLDPALVAAGDSGVPLVLSSP 356
Query: 267 DTPAAKAFMEIAEKLVNKLKEMKG 290
D+ K IA+ L + + + G
Sbjct: 357 DSAIGKELHSIADGLSTRRRGLAG 380
>gi|6912540 nucleotide binding protein 2 (E.coli MinD like) [Homo sapiens]
>gi|11432473|ref|XP_008093.1| nucleotide binding protein
2 (E.coli MinD like) [Homo sapiens]
>gi|5565870|gb|AAD45242.1|AF118394_1 (AF118394) putative
nucleotide binding protein [Homo sapiens]
Length = 271
Score = 176 bits (443), Expect = 2e-43
Identities = 94/259 (36%), Positives = 151/259 (58%), Gaps = 13/259 (5%)
Query: 30 KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEK 89
++ + VLSGKGGVGKST++ L AL G VGILD D+ GP++ +MLG + ++ +
Sbjct: 14 RHIILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAVH--Q 71
Query: 90 FDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGALVTKAIKQLLGDVKWGS 148
D G + F+ + I +MS+G ++ + D+ ++WRG IKQ + DV WG
Sbjct: 72 CDRGWAPV------FLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGE 125
Query: 149 LDFMIIDFPPGTGDEILTVVQSI---QLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYI 205
LD++++D PPGT DE + ++++ Q A++VTTPQ V++ D + + +K + +
Sbjct: 126 LDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVM 185
Query: 206 AVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVL- 264
+VENMS CPHC +F GGGE+LA+ GV FLG +P+D + G +
Sbjct: 186 GIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGHDFIQE 245
Query: 265 YGDTPAAKAFMEIAEKLVN 283
+ +PA A IA+K+++
Sbjct: 246 FPGSPAFAALTSIAQKILD 264
>dbj|BAB03959.1| (AP001507) ATP-binding Mrp protein (Mrp/Nbp35 family) [Bacillus
halodurans]
Length = 350
Score = 176 bits (442), Expect = 3e-43
Identities = 99/252 (39%), Positives = 143/252 (56%), Gaps = 13/252 (5%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+AV SGKGGVGKSTV+VNL LA++G VGI+DADI+G +V M+G+E+
Sbjct: 110 IAVTSGKGGVGKSTVSVNLATTLARLGKKVGIIDADIYGFSVPDMMGIEERPKVVG---- 165
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
E I P+ F +KV+SMG V ++ P+IWRG ++ K + +V+WG LD++
Sbjct: 166 ---EQIFPVERF-----GVKVISMGFFVEDNAPVIWRGPMLGKMLNNFFAEVEWGDLDYL 217
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
I+D PPGTGD L + + I+VTTP A +A M K I VVENM+
Sbjct: 218 ILDLPPGTGDVALDIHTMLPHSKEILVTTPHATAAFVAARAGAMALKTHHEIIGVVENMA 277
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGDTPAAK 272
Y G K +FG+GGGE+LAE+ + LG+IP+ + D P V P +
Sbjct: 278 YFESKITGEKEYVFGQGGGERLAEELKTEVLGRIPLGQPEIDEDDFA-PSVYGATHPIGE 336
Query: 273 AFMEIAEKLVNK 284
+ IA+++++K
Sbjct: 337 IYTAIAKRVIDK 348
>pir||JC5219 nuclear binding protein 35 - yeast (Saccharomyces cerevisiae)
>gi|1360147|emb|CAA64779.1| (X95533) Nbp35p
[Saccharomyces cerevisiae]
Length = 328
Score = 176 bits (441), Expect = 3e-43
Identities = 107/276 (38%), Positives = 157/276 (56%), Gaps = 18/276 (6%)
Query: 14 GADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAAL-AKMGYFVGILDADIHGP 72
G P I + ++K+ VLSGKGGVGKST A L+ AL A VG +D DI GP
Sbjct: 56 GPSPDIPLITDNLSGIEHKILVLSGKGGVGKSTFAAMLSWALSADEDLQVGAMDLDICGP 115
Query: 73 NVAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQP-IIWRGA 131
++ MLG KE ++ + +A MS+ M+PED IIWRG+
Sbjct: 116 SLPHMLGCIKETVHESNSGWTPVYVTDNLA----------TMSIQYMLPEDDSAIIWRGS 165
Query: 132 LVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQ---LDAAIIVTTPQEVALL 188
IK+ L DV W LD+++ID PPGT DE +++ + ++ +D A++VTTPQEVALL
Sbjct: 166 KKNLLIKKFLKDVDWDKLDYLVIDTPPGTSDEHISINKYMRESGIDGALVVTTPQEVALL 225
Query: 189 DTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF--GEGGGEKLAEKEGVDFLGKI 246
D K ++ KK + + +VENMS +CP+C + IF GGGE L ++ G+ FLG +
Sbjct: 226 DVRKEIDFCKKAGINILGLVENMSGFVCPNCKGESQIFKATTGGGEALCKELGIKFLGSV 285
Query: 247 PIDLKAREASDLGIPIV-LYGDTPAAKAFMEIAEKL 281
P+D + ++ D+G + Y D+PA+ A + + E L
Sbjct: 286 PLDPRIGKSCDMGESFLDNYPDSPASSAVLNVVEAL 321
>dbj|BAA91471.1| (AK001023) unnamed protein product [Homo sapiens]
Length = 271
Score = 176 bits (441), Expect = 3e-43
Identities = 95/259 (36%), Positives = 151/259 (57%), Gaps = 13/259 (5%)
Query: 30 KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEK 89
++ + VLSGKGGVGKST++ L AL G VGILD D+ GP++ +MLG + ++ +
Sbjct: 14 RHIILVLSGKGGVGKSTISTELALALRHAGKKVGILDVDLCGPSIPRMLGAQGRAVH--Q 71
Query: 90 FDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGALVTKAIKQLLGDVKWGS 148
D G + F+ + I +MS+G ++ + D+ ++WRG IKQ + DV WG
Sbjct: 72 CDRGWAPV------FLDREQSISLMSVGFLLEKPDEAVVWRGPKKNALIKQFVSDVAWGE 125
Query: 149 LDFMIIDFPPGTGDEILTVVQSI---QLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYI 205
LD++++D PPGT DE + ++++ Q A++VTTPQ V++ D + + +K + +
Sbjct: 126 LDYLVVDTPPGTSDEHMATIEALRPYQPLGALVVTTPQAVSVGDVRRELTFCRKTGLRVM 185
Query: 206 AVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLG-IPIVL 264
+VENMS CPHC +F GGGE+LA+ GV FLG +P+D + G I
Sbjct: 186 GIVENMSGFTCPHCTECTSVFSRGGGEELAQLAGVPFLGSVPLDPALMRTLEEGHDSIQE 245
Query: 265 YGDTPAAKAFMEIAEKLVN 283
+ +PA A IA+K+++
Sbjct: 246 FPGSPAFAALTSIAQKILD 264
>gi|6754908 nucleotide binding protein 2 [Mus musculus]
>gi|6018191|gb|AAF01785.1|AF114169_1 (AF114169)
nucleotide-binding protein short form [Mus musculus]
Length = 275
Score = 174 bits (437), Expect = 1e-42
Identities = 93/264 (35%), Positives = 153/264 (57%), Gaps = 13/264 (4%)
Query: 30 KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEK 89
++ + VLSGKGGVGKST++ L AL G VGILD D+ GP++ ML + + ++ +
Sbjct: 18 RHIILVLSGKGGVGKSTISTELALALRHQGKKVGILDVDLCGPSIPHMLRAQGKAVH--Q 75
Query: 90 FDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGALVTKAIKQLLGDVKWGS 148
D+G + F+ Q I +MS+G ++ D+ ++WRG IKQ + DV WG
Sbjct: 76 CDNGWVPV------FVDQEQSISLMSVGFLLENPDEAVVWRGPKKHALIKQFVSDVAWGQ 129
Query: 149 LDFMIIDFPPGTGDEILTVVQSIQLD---AAIIVTTPQEVALLDTGKAVNMMKKMEVPYI 205
LD++++D PPGT DE + +++++ A++VTTPQ V++ D + + KK + I
Sbjct: 130 LDYLVVDTPPGTSDEHMATMEALRPYRPLGALVVTTPQAVSIGDVRRELTFCKKTGLQVI 189
Query: 206 AVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVL- 264
V+ENMS CPHC ++F G GE+LA GV FLG +P+D + + + G +
Sbjct: 190 GVIENMSGFTCPHCAECTNVFSSGSGEELARLAGVPFLGSVPLDSQLTRSLEEGRDFIQE 249
Query: 265 YGDTPAAKAFMEIAEKLVNKLKEM 288
+ + A A IA+++V+++ +
Sbjct: 250 FPKSTAYSALTSIAQRVVHRMSAL 273
>sp|P50863|MRP_BACSU MRP PROTEIN HOMOLOG >gi|7446824|pir||A69743 ATP-binding Mrp-like
protein homolog ybaL - Bacillus subtilis
>gi|1177249|emb|CAA52756.1| (X74737) rec233 [Bacillus
subtilis] >gi|1644213|dbj|BAA10994.1| (D64126) unknown
[Bacillus subtilis] >gi|2632421|emb|CAB11930.1| (Z99104)
alternate gene name: ybxI~similar to ATP-binding
Mrp-like protein [Bacillus subtilis]
Length = 352
Score = 169 bits (425), Expect = 3e-41
Identities = 97/254 (38%), Positives = 148/254 (58%), Gaps = 15/254 (5%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVE-KEEIYAEKFD 91
+AV SGKGGVGKSTV+VNL +LA++G VG++DADI+G +V M+G+ + I EK
Sbjct: 109 LAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVRPTIEGEK-- 166
Query: 92 DGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDF 151
+ P+ F +KVMSMG V E+ P++WRG ++ K + +V+WG +D+
Sbjct: 167 ------LLPVERF-----GVKVMSMGFFVEENAPVVWRGPMLGKMLNNFFHEVEWGEVDY 215
Query: 152 MIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENM 211
+++D PPGTGD L V + IIV+TP A +A +M K + + V+ENM
Sbjct: 216 IVLDLPPGTGDVALDVHTMLPSCKEIIVSTPHPTAAFVAARAGSMAIKTDHEVVGVIENM 275
Query: 212 SYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGDTPAA 271
+Y G + +FG+GGG+KLAE+ V LG+IP+ + D P V + P
Sbjct: 276 AYYESAKTGEREYVFGKGGGDKLAEELNVPLLGRIPLKQPDWD-KDQFAPSVYDENHPIG 334
Query: 272 KAFMEIAEKLVNKL 285
+ + +IA+K+ K+
Sbjct: 335 EIYQDIAKKIDAKM 348
>gb|AAF53559.1| (AE003652) CG17904 gene product [Drosophila melanogaster]
Length = 311
Score = 169 bits (424), Expect = 3e-41
Identities = 99/255 (38%), Positives = 142/255 (54%), Gaps = 21/255 (8%)
Query: 16 DPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMG--YFVGILDADIHGPN 73
DP + E K K+K+ +LSGKGGVGKSTV LT LA+ G+LD DI GP+
Sbjct: 41 DPGKALVVESMKDVKHKLLILSGKGGVGKSTVTSLLTRYLARSNPDSNFGVLDIDICGPS 100
Query: 74 VAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGAL 132
+++G E ++ + +G + +MS+G ++ D IIWRG
Sbjct: 101 QPRLMGALGESVHQSGYGWSP----------VGIEDNVCLMSIGFLLGSVDDAIIWRGPK 150
Query: 133 VTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDA------AIIVTTPQEVA 186
I+Q L +V WG+LD +++D PPGT DE L+VV ++ DA A++VTTPQEV+
Sbjct: 151 KNGMIRQFLSEVDWGNLDLLLLDTPPGTSDEHLSVVSYLKDDANPESLRAVMVTTPQEVS 210
Query: 187 LLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF--GEGGGEKLAEKEGVDFLG 244
LLD K +N KK +P + V+ENMS C HCGN +IF GG + + G+ LG
Sbjct: 211 LLDVRKEINFCKKQNIPIVGVIENMSSFRCGHCGNSSEIFPAKTGGAAAMCAEMGIPLLG 270
Query: 245 KIPIDLKAREASDLG 259
+P+D + +A D G
Sbjct: 271 SLPLDQQISKACDSG 285
>sp|Q93459|MRPL_CAEEL MRP-FAMILY PUTATIVE NUCLEOTIDE-BINDING PROTEIN F10G8.6
>gi|7498861|pir||T20728 hypothetical protein F10G8.6 -
Caenorhabditis elegans >gi|3875736|emb|CAB02285.1|
(Z80216) contains similarity to Pfam domain: PF00142
(4Fe-4S iron sulfur cluster binding proteins, NifH/frxC
family), Score=17.6, E-value=0.00015, N=1~cDNA EST
yk331c8.3 comes from this gene~cDNA EST yk331e7.3 comes
from this gene~cDNA EST yk399h2.3 co>
Length = 334
Score = 166 bits (417), Expect = 2e-40
Identities = 106/295 (35%), Positives = 164/295 (54%), Gaps = 40/295 (13%)
Query: 21 RIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAK-MGYFVGILDADIHGPNVAKMLG 79
+I+++ + K+K+ +LSGKGGVGKST+ NL ALA V ILD DI GP+ +M+G
Sbjct: 49 KIQDRFSRIKHKILILSGKGGVGKSTLTSNLARALASDPSKQVAILDVDICGPSQPRMMG 108
Query: 80 VEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGALVTKAIK 138
VE EE++ DG + G + +MS+ ++ + + +IWRGA IK
Sbjct: 109 VEDEEVHNSA--DGWTPV--------GIQPNLTLMSIAFLLGDKNDAVIWRGARKNGMIK 158
Query: 139 QLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSI----QLDAAIIVTTPQEVALLDTGK-- 192
Q L DV WG +D+++ID PPGT DE +++VQ + LD A+IV+TPQEV+LLD K
Sbjct: 159 QFLKDVDWGEVDYLLIDTPPGTSDEHISLVQFLLQAGPLDGALIVSTPQEVSLLDVRKEA 218
Query: 193 -------------------AVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF--GEGGG 231
V+ K +VP + VVENM+ +CP+C + +F GG
Sbjct: 219 SLNLKLSLKKSFQNKFLILTVSFCVKTKVPILGVVENMARFVCPNCAHTTLLFPTSTGGA 278
Query: 232 EKLAEKEGVDFLGKIPIDLKAREASDLGIPIV-LYGDTPAAKAFMEIAEKLVNKL 285
E++ + ++ L ++P++ +A D G D+ AK+F+++AEK+ KL
Sbjct: 279 EQMCKDSNLELLAQLPLEPALAKALDNGEDFFETNPDSTLAKSFLDLAEKVKAKL 333
>emb|CAB71141.1| (AJ271724) hypothetical protein OrfA [Eubacterium acidaminophilum]
Length = 274
Score = 159 bits (397), Expect = 5e-38
Identities = 95/273 (34%), Positives = 145/273 (52%), Gaps = 35/273 (12%)
Query: 30 KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEK 89
K +A++SGKGGVGKS+V L +L K G+ VGILD D+ G ++ K+ G+ E+
Sbjct: 15 KKVIAIMSGKGGVGKSSVTSLLAVSLIKKGFKVGILDGDMGGTSIPKIFGITGEKSNTSS 74
Query: 90 FDDGHFEMIPPMADFMGQVTPIKVMSMG-MMVPEDQPIIWRGALVTKAIKQLLGDVKWGS 148
+ I P+ G IKVMS+ +M ED P+IWRG L++K ++Q D WG
Sbjct: 75 ------KGIEPVTTPSG----IKVMSLSFLMEKEDSPVIWRGLLISKTLRQFYTDFLWGD 124
Query: 149 LDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEV--------------ALLDTGKAV 194
LD+++IDFPPGT D LT++ S+ P + + K+
Sbjct: 125 LDYLLIDFPPGTSDLPLTMIHSLPGGWHNNCFVPARSCKPGYRARIRNHGHSCMIVKKSA 184
Query: 195 NMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKARE 254
+M K+M+VP + ++ENMSY CP C +I+IFG+ EK++++ ++ + +PID K E
Sbjct: 185 DMAKRMDVPILGIIENMSYYECPDCKKRINIFGKSKTEKISKEMRIELIAHMPIDPKLAE 244
Query: 255 ASDLGIPIVLYGDTPAAKAFMEIAEKLVNKLKE 287
D G A + + I LVN L +
Sbjct: 245 LCDEG----------AIEEYYNINRALVNLLSD 267
>emb|CAC14524.1| (AL446004) MRP-family nucleotide-binding protein [Leishmania major]
Length = 327
Score = 159 bits (397), Expect = 5e-38
Identities = 101/293 (34%), Positives = 157/293 (53%), Gaps = 31/293 (10%)
Query: 14 GADPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPN 73
G DP I+E+ K+KV V+SGKGGVGKST+ L AL G VG++D DI GP+
Sbjct: 40 GPDPDIPLIRERLAGVKHKVMVVSGKGGVGKSTMTKELAFALGARGLSVGLMDMDICGPS 99
Query: 74 VAKMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGAL 132
+ ++ GV E+ + G E P + D + +MSM ++ + ++ +++RG
Sbjct: 100 LPRLTGVRGEDAHQSA---GGIE--PVLVD-----ENVTMMSMHYLLSDKNEAVLFRGPR 149
Query: 133 VTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQ-----LDAAIIVTTPQEVAL 187
IK L DV WG+LD ++ID PPGT DE +TV +Q +D A+++TTPQ VA
Sbjct: 150 KNGVIKMFLKDVIWGNLDVLLIDTPPGTSDEHITVNSLLQQTTNGVDGAVLITTPQRVAE 209
Query: 188 LDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIF---------GEGGGEKLAEKE 238
D + VN +K ++P + +VENMS +CP C + IF EG G +L+ +
Sbjct: 210 ADVRREVNFCQKAKLPILGLVENMSGFVCPGCHKESQIFPKEEGGEGRKEGAGVRLSREF 269
Query: 239 GVDFLGKIPIDLKAREASDLGIPIVLYGD------TPAAKAFMEIAEKLVNKL 285
V G++P+D + +A + GI Y + + A +A++L+ L
Sbjct: 270 DVPLWGEVPLDPQLMKACEEGISFSEYVEKSGMTSSTTLDALFTVADQLIASL 322
>sp|Q9ZE27|MRP_RICPR MRP PROTEIN HOMOLOG >gi|7467663|pir||G71721 hypothetical protein
RP121 - Rickettsia prowazekii
>gi|3860689|emb|CAA14590.1| (AJ235270) unknown
[Rickettsia prowazekii]
Length = 318
Score = 147 bits (368), Expect = 1e-34
Identities = 82/253 (32%), Positives = 141/253 (55%), Gaps = 35/253 (13%)
Query: 16 DPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVA 75
D Q+ K + K + V SGKGGVGKST++ + L+ Y VGI+DADI+GP++
Sbjct: 83 DKKAQKPKHFVENVKKIILVASGKGGVGKSTISALIAQQLSLENYRVGIVDADIYGPSIP 142
Query: 76 KMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPI-----KVMSMGMMVPEDQPIIWRG 130
+ G+ IP + G++ PI +++S+G V II+RG
Sbjct: 143 HIFGING---------------IPKTVE--GRIVPILAQNIQIISIGFFVKAHSAIIYRG 185
Query: 131 ALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDT 190
+ +K I QLL + +W +LD++IID PPGTGD L+++++ LD I+VTT Q+++ +D
Sbjct: 186 PMASKIIYQLLSNTRWNNLDYLIIDMPPGTGDIHLSIIENYHLDGVIVVTTQQKISEIDV 245
Query: 191 GKAVNMMKKMEVPYIAVVENMSYLI-CPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPID 249
+++++ +K+ +P + ++ENM Y++ HCG L++K + + +IPI
Sbjct: 246 IRSIDLYRKLGLPILGIIENMIYMLESDHCG------------YLSKKYHIPLIAQIPIM 293
Query: 250 LKAREASDLGIPI 262
+ A D +P+
Sbjct: 294 PQIANACDKSLPL 306
>gb|AAD01903.1| (AF030511) MRP ATPase homolog [Actinobacillus pleuropneumoniae]
Length = 150
Score = 126 bits (314), Expect = 3e-28
Identities = 59/133 (44%), Positives = 92/133 (68%), Gaps = 1/133 (0%)
Query: 154 IDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSY 213
ID PPGTGD LT+ Q I + A++VTTPQ++ALLD K ++M +K+ VP + ++ENMS
Sbjct: 1 IDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAVKGISMFQKVSVPVLGIIENMSV 60
Query: 214 LICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIP-IVLYGDTPAAK 272
IC +CG+ DIFG GG EK+A+K G LG++P+ ++ R+ D G P +V + ++
Sbjct: 61 HICQNCGHHEDIFGTGGAEKVAKKYGTKVLGQMPLHIRLRQDLDAGTPTVVAAPEHDTSR 120
Query: 273 AFMEIAEKLVNKL 285
A++E+A K+ ++L
Sbjct: 121 AYIELAAKVASEL 133
>gb|AAD01696.1| (AF021919) MRP ATPase homolog [Actinobacillus pleuropneumoniae]
Length = 150
Score = 125 bits (311), Expect = 6e-28
Identities = 58/133 (43%), Positives = 92/133 (68%), Gaps = 1/133 (0%)
Query: 154 IDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSY 213
+D PPGTGD LT+ Q I + A++VTTPQ++ALLD K ++M +K+ VP + ++ENMS
Sbjct: 1 MDMPPGTGDIQLTLSQQIPVTGAVVVTTPQDIALLDAVKGISMFQKVSVPVLGIIENMSV 60
Query: 214 LICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIP-IVLYGDTPAAK 272
IC +CG+ DIFG GG EK+A+K G LG++P+ ++ R+ D G P +V + ++
Sbjct: 61 HICQNCGHHEDIFGTGGAEKVAKKYGTKVLGQMPLHIRLRQDLDAGTPTVVAAPEHETSR 120
Query: 273 AFMEIAEKLVNKL 285
A++E+A K+ ++L
Sbjct: 121 AYIELAAKVASEL 133
>emb|CAC09490.1| (AL442114) putative nucleotide-binding protein [Oryza sativa]
Length = 262
Score = 119 bits (295), Expect = 4e-26
Identities = 71/186 (38%), Positives = 103/186 (55%), Gaps = 39/186 (20%)
Query: 113 VMSMGMMVPE-DQPIIWRGALVTKAIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSI 171
VMS+G M+P D +IWRG IKQ L DV WG +D++++D PPGT DE +++VQ +
Sbjct: 50 VMSIGFMLPNPDDAVIWRGPRKNGLIKQFLKDVDWGEIDYLVVDAPPGTSDEHISIVQYL 109
Query: 172 Q---LDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYL---------ICPHC 219
Q +D AIIVTTPQ+V+L+D K +N KK+ VP + VVENMS L + P
Sbjct: 110 QIAGIDGAIIVTTPQQVSLIDVKKEINFCKKVGVPVLGVVENMSGLRQAFSDMKFVKPSE 169
Query: 220 GNKID------------------------IF--GEGGGEKLAEKEGVDFLGKIPIDLKAR 253
+ D +F +GG EK+ ++ V FLGK+P+D +
Sbjct: 170 AGETDATEWALNYIKEKAPELLSVVACSEVFDSSKGGAEKMCQEMEVPFLGKVPMDPQLC 229
Query: 254 EASDLG 259
+A++ G
Sbjct: 230 KAAEEG 235
>pir||D71036 probable ATP-binding protein - Pyrococcus horikoshii
>gi|3258009|dbj|BAA30692.1| (AP000006) 242aa long
hypothetical ATP-binding protein [Pyrococcus horikoshii]
Length = 242
Score = 118 bits (294), Expect = 6e-26
Identities = 76/232 (32%), Positives = 126/232 (53%), Gaps = 24/232 (10%)
Query: 16 DPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVA 75
DP I + +K + + V+SGKGGVGKS ++ L L + GY VG+LD D HG +
Sbjct: 3 DPREIAISSRLEKVRNVIPVVSGKGGVGKSLISTTLALLLREKGYKVGLLDLDFHGASDH 62
Query: 76 KMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTK 135
+LG E +E E D G ++PP +V +K M++ + E++P RG V+
Sbjct: 63 VILGFEPKEFPEE--DKG---VVPP------EVNGVKFMTI-VYYTENKPTPLRGKEVSD 110
Query: 136 AIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVN 195
A+ +LL +W LD+++ID PPG GD L V++ ++ I+V TP ++AL K +
Sbjct: 111 ALIELLTITRWDELDYLVIDMPPGLGDPFLDVLRFLKRGKFIVVATPSKLALNVVEKLIQ 170
Query: 196 MMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIP 247
++K+ + ++ENM K+D E + LA++ G+++L +P
Sbjct: 171 LLKEENREILGIIENM----------KLD--EEEDVKNLAKRHGINYLLGVP 210
>pir||A75178 mrp protein homolog PAB0400 - Pyrococcus abyssi (strain Orsay)
>gi|5458014|emb|CAB49504.1| (AJ248284) MRP PROTEIN
HOMOLOG [Pyrococcus abyssi]
Length = 242
Score = 114 bits (283), Expect = 1e-24
Identities = 77/228 (33%), Positives = 121/228 (52%), Gaps = 24/228 (10%)
Query: 16 DPLTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVA 75
DP I + +K + + V SGKGGVGKS ++ L LA+ G+ VG+LD D HG +
Sbjct: 3 DPRQIAISARLEKVRNVIPVSSGKGGVGKSLISTTLALVLAERGFKVGLLDLDFHGASDH 62
Query: 76 KMLGVEKEEIYAEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTK 135
+LG E +E E D G ++PP+ V +K M++ E++P RG ++
Sbjct: 63 VILGFEPKEFPEE--DRG---VVPPI------VHGVKFMTIAYYT-ENRPTPLRGKEISD 110
Query: 136 AIKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVN 195
A+ +LL +W LD++IID PPG GD L V++ + I+V TP ++AL K +
Sbjct: 111 ALIELLTITRWDELDYLIIDMPPGLGDPFLDVLRFLGRGKFIVVATPSKLALNVVEKLIQ 170
Query: 196 MMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFL 243
++K + ++ENM K+D E +++AEK GV +L
Sbjct: 171 LLKDENREILGIIENM----------KLD--EEEDVKRIAEKYGVKYL 206
>sp|P53381|MRP_CLOPE MRP PROTEIN HOMOLOG >gi|1149678|emb|CAA60227.1| (X86509) mrp
[Clostridium perfringens]
Length = 140
Score = 114 bits (282), Expect = 1e-24
Identities = 61/144 (42%), Positives = 87/144 (60%), Gaps = 6/144 (4%)
Query: 42 VGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFD-DGHFEMIPP 100
VGKSTV L LAK GY VG+LDADI GP++ + G+ ++ D +G P
Sbjct: 1 VGKSTVTGILATQLAKKGYKVGVLDADITGPSMPRFFGINEKRADIVAMDSEGKQVKFVP 60
Query: 101 MADFMGQVTPIKVMSMGMMVP-EDQPIIWRGALVTKAIKQLLGDVKWGSLDFMIIDFPPG 159
+ +G IKV+SM +++ ED P+IWRG +VT + Q+ D W LD+++ID PPG
Sbjct: 61 VKTELG----IKVISMNLLMEVEDDPVIWRGPMVTGVLNQMFKDTDWEELDYLLIDMPPG 116
Query: 160 TGDEILTVVQSIQLDAAIIVTTPQ 183
T D LTV+Q+ + +IV+TPQ
Sbjct: 117 TSDITLTVMQTFPIKELVIVSTPQ 140
>emb|CAA86248.1| (Z38113) incomplete orf, len: 160, CAI: 0.09 similar to MRP_ECOLI
P21590 39.9 KD PROTEIN [Saccharomyces cerevisiae]
Length = 158
Score = 111 bits (275), Expect = 1e-23
Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 7/144 (4%)
Query: 30 KYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEK 89
K+ + +LSGKGGVGKS+V L MG+ VG+LD D+ GP++ +M G+E E IY
Sbjct: 17 KHIILILSGKGGVGKSSVTTQTALTLCSMGFKVGVLDIDLTGPSLPRMFGLENESIYQGP 76
Query: 90 FDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPE-DQPIIWRGALVTKAIKQLLGDVKWGS 148
E P+ + V+S+G ++ + +IWRG T IKQ + DV WG
Sbjct: 77 ------EGWQPVKVETNSTGSLSVISLGFLLGDRGNSVIWRGPKKTSMIKQFISDVAWGE 130
Query: 149 LDFMIIDFPPGTGDEILTVVQSIQ 172
LD+++ID PPGT DE +++ + ++
Sbjct: 131 LDYLLIDTPPGTSDEHISIAEELR 154
>emb|CAC01046.1| (AL390935) possible mrp ATPase homolog [Leishmania major]
Length = 132
Score = 100 bits (247), Expect = 2e-20
Identities = 54/131 (41%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Query: 159 GTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYLICPH 218
GT D LT+ Q + L A I +TPQ+VAL+D + ++M + P + +VENMSY C
Sbjct: 1 GTNDVHLTITQEVMLTGAGIDSTPQKVALIDVRRGIDMFAAVNAPVLGLVENMSYFKCDS 60
Query: 219 CGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGDT--PAAKAFME 276
C + IFG GG + AE+ GV FLG+IP + + +D G+P L GD AAK + E
Sbjct: 61 CDKRHYIFGRGGVARAAEELGVPFLGEIPFVSRIMQDTDEGVPPALRGDATLEAAKPYYE 120
Query: 277 IAEKLVNKLKE 287
+AE++ L E
Sbjct: 121 LAERIHATLGE 131
>emb|CAA86200.1| (Z38062) len: 138, CAI: 0.15, incomplete ORF similar to MRP_ECOLI
P21590 MRP PROTEIN [Saccharomyces cerevisiae]
Length = 138
Score = 89.3 bits (218), Expect = 5e-17
Identities = 43/113 (38%), Positives = 65/113 (57%), Gaps = 5/113 (4%)
Query: 174 DAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEK 233
D I+VTTPQ VA D K +N KK+++ + ++ENMS +CPHC +IF GGG++
Sbjct: 4 DGGIVVTTPQSVATADVKKEINFCKKVDLKILGIIENMSGFVCPHCAECTNIFSSGGGKR 63
Query: 234 LAEKEGVDFLGKIPIDLK-----AREASDLGIPIVLYGDTPAAKAFMEIAEKL 281
L+E+ V +LG +PID K + S + +Y ++ F EI +KL
Sbjct: 64 LSEQFSVPYLGNVPIDPKFVEMIENQVSSKKTLVEMYRESSLCPIFEEIMKKL 116
>gi|11467859 septum-site determining protein [Nephroselmis olivacea]
>gi|11467886|ref|NP_050937.1| septum-site determining
protein [Nephroselmis olivacea]
>gi|5880788|gb|AAD54881.1|AF137379_104 (AF137379)
septum-site determining protein [Nephroselmis olivacea]
>gi|5880815|gb|AAD54908.1|AF137379_131 (AF137379)
septum-site determining protein [Nephroselmis olivacea]
Length = 274
Score = 80.4 bits (195), Expect = 2e-14
Identities = 72/267 (26%), Positives = 122/267 (44%), Gaps = 18/267 (6%)
Query: 18 LTQRIKEKEKKWKYKVAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKM 77
+T + KE + + SGKGGVGK+T NL +A++GY V ++DADI N+ +
Sbjct: 1 MTMQDKEPSAPACRVIVITSGKGGVGKTTATANLGMCIARLGYRVALIDADIGLRNLDLL 60
Query: 78 LGVEKEEIY-AEKFDDGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKA 136
LG+E +Y A + +G + + + K +SM M Q R + K
Sbjct: 61 LGLENRVVYTAMEVIEGQCRLEQALI----RDKRWKNLSMLAMSKNRQ----RYNMTRKN 112
Query: 137 IKQLLGDVKWGSLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNM 196
+ ++ +K +++ID P G + + D AI+VTTP+ A+ D + +
Sbjct: 113 MMMIVDSIKERGYQYILIDCPAGIDAGFVNAI--APADEAILVTTPEITAIRDADRVAGL 170
Query: 197 MKKMEVPYIAVVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREAS 256
++ + + +V N + P + D+ + + GV LG IP D ++
Sbjct: 171 LEANDFYNVRLVANR---VRPEMIQQNDMMSVDDVQGMI---GVPLLGAIPEDKNVIIST 224
Query: 257 DLGIPIVLYGD-TPAAKAFMEIAEKLV 282
+ G P+V T A AF E A +LV
Sbjct: 225 NRGEPLVCQKTITLAGVAFEEAARRLV 251
>sp|Q01464|MIND_BACSU SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|322178|pir||G45239 cell division inhibitor minD
[validated] - Bacillus subtilis
>gi|142859|gb|AAA22401.1| (M96343) MinD protein
[Bacillus subtilis] >gi|143216|gb|AAA22609.1| (M95582)
putative [Bacillus subtilis] >gi|580893|emb|CAA78818.1|
(Z15113) MinD [Bacillus subtilis]
>gi|2635264|emb|CAB14759.1| (Z99118) ATPase activator of
MinC [Bacillus subtilis]
Length = 268
Score = 77.6 bits (188), Expect = 2e-13
Identities = 70/257 (27%), Positives = 130/257 (50%), Gaps = 24/257 (9%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFD- 91
+ + SGKGGVGK+T + NL ALA +G V ++D DI N+ ++G+E IY + D
Sbjct: 5 IVITSGKGGVGKTTTSANLGTALAILGKRVCLVDTDIGLRNLDVVMGLENRIIY-DLVDV 63
Query: 92 -DGHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLD 150
+G +M + V + + ++P Q + A+ + IK ++ ++K D
Sbjct: 64 VEGRCKMHQAL------VKDKRFDDLLYLMPAAQTSD-KTAVAPEQIKNMVQELKQ-EFD 115
Query: 151 FMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKK---MEVPYIAV 207
++IID P G V D AI+VTTP+ A+ D + + ++++ +E P + V
Sbjct: 116 YVIIDCPAGIEQGYKNAVSGA--DKAIVVTTPEISAVRDADRIIGLLEQEENIEPPRLVV 173
Query: 208 VENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGD 267
++L+ G+ +DI +++ + +D LG + D + +AS+ G PI +
Sbjct: 174 NRIRNHLM--KNGDTMDI------DEIVQHLSIDLLGIVADDDEVIKASNHGEPIAMDPK 225
Query: 268 TPAAKAFMEIAEKLVNK 284
A+ A+ IA +++ +
Sbjct: 226 NRASIAYRNIARRILGE 242
>pir||C71105 probable cell division inhibitor MinD - Pyrococcus horikoshii
>gi|3257018|dbj|BAA29701.1| (AP000003) 245aa long
hypothetical cell division inhibitor MinD [Pyrococcus
horikoshii]
Length = 245
Score = 77.3 bits (187), Expect = 2e-13
Identities = 72/260 (27%), Positives = 131/260 (49%), Gaps = 27/260 (10%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
++++SGKGG GK+TV NL+ AL +MG V +D D+ N++ +LGV+ I
Sbjct: 5 ISIVSGKGGTGKTTVTANLSVALGEMGRKVLAVDGDLTMANLSLVLGVDDVNITLHDVLA 64
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVT--KAIKQLLGDVKWGSLD 150
G ++ A +M Q + ++ + W + + + +++ +K G D
Sbjct: 65 GDAKL--EDAIYMTQFENVYIL--------PGAVDWEHVIKADPRKLPEVIKSLK-GKYD 113
Query: 151 FMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVEN 210
F++ID P G + ++ + + + AI+VT P+ L DT K ++KK A +
Sbjct: 114 FILIDCPAGLQLDAMSAM--LSGEEAILVTNPEISCLTDTMKVGMVLKK------AGLAI 165
Query: 211 MSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLY-GDTP 269
+ +++ + ++ DI E + + V L IP D RE + GIP V Y ++
Sbjct: 166 LGFILNRYGRSERDIPPEAAQDVM----DVPLLAVIPEDPVIREGTLEGIPAVKYKPESK 221
Query: 270 AAKAFMEIAEKLVNKLKEMK 289
A+AF+++AE+ V+KL +K
Sbjct: 222 GAQAFIKLAEE-VDKLAGIK 240
>sp|Q55900|MIND_SYNY3 SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443733|pir||S76970 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
>gi|1001783|dbj|BAA10662.1| (D64005) septum
site-determining protein MinD [Synechocystis sp.]
Length = 266
Score = 75.3 bits (182), Expect = 8e-13
Identities = 66/250 (26%), Positives = 118/250 (46%), Gaps = 17/250 (6%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+ V SGKGGVGK+T NL AALA++G V ++DAD N+ +LG+E+ +Y
Sbjct: 5 IVVTSGKGGVGKTTTTANLGAALARLGKKVVLIDADFGLRNLDLLLGLEQRIVYTA---- 60
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
+++ + K + +++P Q + A+ + ++ L+ +K D++
Sbjct: 61 --IDVLADECTIDKALVKDKRLPNLVLLPAAQNRS-KDAINAEQMQSLVEQLK-DKFDYI 116
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
IID P G V Q AIIVTTP+ A+ D + + +++ ++ I+++ N
Sbjct: 117 IIDCPAGIEAGFRNAVAPAQ--EAIIVTTPEMSAVRDADRVIGLLEAEDIGKISLIVNRL 174
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGD-TPAA 271
I + E + + V +G +P D K +++ G P+V+ +
Sbjct: 175 RPEMVQLNQMISV------EDILDLLAVPLIGILPDDQKIIISTNKGEPLVMEEKLSVPG 228
Query: 272 KAFMEIAEKL 281
AF IA +L
Sbjct: 229 LAFQNIARRL 238
>pir||A75056 cell division inhibitor (mind-2) PAB0954 - Pyrococcus abyssi
(strain Orsay) >gi|5458855|emb|CAB50342.1| (AJ248287)
cell division inhibitor (minD-2) [Pyrococcus abyssi]
Length = 245
Score = 75.3 bits (182), Expect = 8e-13
Identities = 72/258 (27%), Positives = 129/258 (49%), Gaps = 23/258 (8%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
++++SGKGG GK+TV NL+ AL +MG V +D D+ N++ +LGV+ ++
Sbjct: 5 ISIVSGKGGTGKTTVTANLSVALGEMGKKVLAVDGDLTMANLSLVLGVDDVDVTLHDVLA 64
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
G ++ A +M Q + V+ V + + + + IK L GD DF+
Sbjct: 65 GEAKL--QDAIYMTQFDNVYVLPGA--VDWEHVMKADPRKLPEVIKSLKGD-----YDFI 115
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVENMS 212
+ID P G + ++ + + + A++VT P+ L DT K +++K A + +
Sbjct: 116 LIDCPAGLQLDAMSAM--LSGEEALLVTNPEISCLTDTMKVGIVLRK------AGLAILG 167
Query: 213 YLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLY-GDTPAA 271
+++ + + DI + + + V L IP D RE + GIP V Y ++ A
Sbjct: 168 FILNRYGRTENDIPPDAAQDVM----DVPLLAVIPEDPAIREGTLEGIPAVKYKPESEGA 223
Query: 272 KAFMEIAEKLVNKLKEMK 289
KAF+++A++ V KL +K
Sbjct: 224 KAFVKLAQE-VEKLAGIK 240
>gi|11498303 cell division inhibitor (minD-1) [Archaeoglobus fulgidus]
>gi|7443738|pir||H69336 cell division inhibitor (minD-1)
homolog - Archaeoglobus fulgidus
>gi|2649916|gb|AAB90541.1| (AE001056) cell division
inhibitor (minD-1) [Archaeoglobus fulgidus]
Length = 263
Score = 74.5 bits (180), Expect = 1e-12
Identities = 73/268 (27%), Positives = 125/268 (46%), Gaps = 31/268 (11%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+ V SGKGG GK+T+ NL ALA++G+ V I+DADI N+ +LG+E + +
Sbjct: 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVLA 64
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVK---WGSL 149
G + A ++G +KV+ G+ + + KA + L DV S
Sbjct: 65 GEARI--DEAIYVGP-GGVKVVPAGVSLEG----------LRKANPEKLEDVLTQIMEST 111
Query: 150 DFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKMEVPYIAVVE 209
D +++D P G + + + Q ++V P+ ++ D K + +++ + VV
Sbjct: 112 DILLLDAPAGLERSAVIAIAAAQ--ELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVV 169
Query: 210 N-MSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYG-D 267
N ++ L N+I+ E +G IP D + R A+ G P+VL +
Sbjct: 170 NRITTLGIEMAKNEIEAILE-----------AKVIGLIPEDPEVRRAAAYGKPVVLRSPN 218
Query: 268 TPAAKAFMEIAEKLVNKLKEMKGDEKKE 295
+PAA+A +E+A + K+ E KE
Sbjct: 219 SPAARAIVELANYIAGGAKKKVPAEVKE 246
>pir||F75175 cell division inhibitor (mind-1) PAB1983 - Pyrococcus abyssi
(strain Orsay) >gi|5457995|emb|CAB49485.1| (AJ248284)
cell division inhibitor (minD-1) [Pyrococcus abyssi]
Length = 260
Score = 73.7 bits (178), Expect = 2e-12
Identities = 71/256 (27%), Positives = 123/256 (47%), Gaps = 35/256 (13%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+ SGKGG GK+T N+ ALA+ G V ++DADI N++ +LG+E +
Sbjct: 6 IVFASGKGGTGKTTTVANIGVALAQFGKDVILIDADITMANLSLILGMEDIPVTLHDVLA 65
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDV-----KWG 147
G ++ + + +KV+ G+ + + + KA + L D+ + G
Sbjct: 66 GEADLKDAIYE---GPAGVKVIPGGLSLEK----------IKKARAERLRDLIREISQMG 112
Query: 148 SLDFMIIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKKM-EVPYIA 206
DF++ID P G E+ ++ + IIVT P+ A+ D+ K + +K+ +P A
Sbjct: 113 --DFILIDAPAGL--ELTSITALLIGKELIIVTNPEIAAITDSLKTKLVAEKLGTLPLGA 168
Query: 207 VVENMSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYG 266
++ ++ K ++ E++ V LG +P D + + AS G+P+V+
Sbjct: 169 ILNRVT-------SEKTEL----SREEIEALLEVPVLGTVPEDPEVKRASAYGVPLVVKN 217
Query: 267 DT-PAAKAFMEIAEKL 281
T PAA A+ EIA KL
Sbjct: 218 PTSPAAIAYKEIAAKL 233
>sp|Q9X2I3|MIND_THEMA SEPTUM SITE-DETERMINING PROTEIN MIND (CELL DIVISION INHIBITOR MIND)
>gi|7443735|pir||A72200 septum site-determining protein
MinD - Thermotoga maritima (strain MSB8)
>gi|4982456|gb|AAD36932.1|AE001824_1 (AE001824) septum
site-determining protein MinD [Thermotoga maritima]
Length = 271
Score = 71.8 bits (173), Expect = 9e-12
Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 33 VAVLSGKGGVGKSTVAVNLTAALAKMGYFVGILDADIHGPNVAKMLGVEKEEIYAEKFDD 92
+ V SGKGGVGK+T+ NL ALAK+G V ++DADI N+ +LG+E +Y D
Sbjct: 5 IVVTSGKGGVGKTTITANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYT-MIDV 63
Query: 93 GHFEMIPPMADFMGQVTPIKVMSMGMMVPEDQPIIWRGALVTKAIKQLLGDVKWGSLDFM 152
+ ++ P A + K++ ++P Q I + + +K ++ ++ D++
Sbjct: 64 VNGKVSPQEA-----LVKHKMLKNLYLLPASQ-IATKEMISPNDMKAIVKEL-IPHFDYI 116
Query: 153 IIDFPPGTGDEILTVVQSIQLDAAIIVTTPQEVALLDTGKAVNMMKK--MEVPYIAVVEN 210
IID P G V + ++VTTP+ A+ D + + +++ I V+ N
Sbjct: 117 IIDSPAGIERGFRNAV--APAERVLVVTTPELPAISDADRVIGLLENFGFSDEKINVIIN 174
Query: 211 MSYLICPHCGNKIDIFGEGGGEKLAEKEGVDFLGKIPIDLKAREASDLGIPIVLYGDTPA 270
PH K ++ + + ++ + IP AS+ GIP+ L G++
Sbjct: 175 R---FKPHMVKKGEMLTT---DDIKHTLSLEIIAVIPDSEDIIVASNTGIPVSLNGNSRI 228
Query: 271 AKAFMEIAEKL 281
+K F +A ++
Sbjct: 229 SKNFENLARRI 239
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113982911
Number of Sequences: 2977
Number of extensions: 4864089
Number of successful extensions: 18038
Number of sequences better than 1.0e-10: 70
Number of HSP's better than 0.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 17861
Number of HSP's gapped (non-prelim): 75
length of query: 295
length of database: 189,106,746
effective HSP length: 56
effective length of query: 239
effective length of database: 155,591,474
effective search space: 37186362286
effective search space used: 37186362286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)