BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1796 (PAB1796) DE:Hypothetical protein
(267 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75131 hypothetical protein PAB1796 - Pyrococcus abyssi (st... 517 e-146
pir||A71086 hypothetical protein PH0950 - Pyrococcus horikoshii ... 421 e-117
sp|P37511|YYAM_BACSU HYPOTHETICAL 32.9 KD PROTEIN IN TETB-EXOA I... 80 4e-14
>pir||C75131 hypothetical protein PAB1796 - Pyrococcus abyssi (strain Orsay)
>gi|5458275|emb|CAB49764.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 267
Score = 517 bits (1317), Expect = e-146
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MRRKSEGIALALIGMLLYGLEPVVISYNPVNPISFAFFSAFFASLILIPFADFLEVKAYW 60
MRRKSEGIALALIGMLLYGLEPVVISYNPVNPISFAFFSAFFASLILIPFADFLEVKAYW
Sbjct: 1 MRRKSEGIALALIGMLLYGLEPVVISYNPVNPISFAFFSAFFASLILIPFADFLEVKAYW 60
Query: 61 RRGALIGFFGTFLAYLSYSFGAKMSSSVNAALITRAEVIFSFLLSYAILGERITRRRIIN 120
RRGALIGFFGTFLAYLSYSFGAKMSSSVNAALITRAEVIFSFLLSYAILGERITRRRIIN
Sbjct: 61 RRGALIGFFGTFLAYLSYSFGAKMSSSVNAALITRAEVIFSFLLSYAILGERITRRRIIN 120
Query: 121 STLVIIGVILVITQGRKISLNVGDFLLLLVPLFWQIGHVIAKKTNAKPQTIAFLRNSFGS 180
STLVIIGVILVITQGRKISLNVGDFLLLLVPLFWQIGHVIAKKTNAKPQTIAFLRNSFGS
Sbjct: 121 STLVIIGVILVITQGRKISLNVGDFLLLLVPLFWQIGHVIAKKTNAKPQTIAFLRNSFGS 180
Query: 181 LFLLLPTLTTELSFTPYSIAEGLIIALGQLIWYSAISRIDLSLATAIITPAPAVAIGIAL 240
LFLLLPTLTTELSFTPYSIAEGLIIALGQLIWYSAISRIDLSLATAIITPAPAVAIGIAL
Sbjct: 181 LFLLLPTLTTELSFTPYSIAEGLIIALGQLIWYSAISRIDLSLATAIITPAPAVAIGIAL 240
Query: 241 ITGVPVTLWHLLGFIFITIGTLNLTRD 267
ITGVPVTLWHLLGFIFITIGTLNLTRD
Sbjct: 241 ITGVPVTLWHLLGFIFITIGTLNLTRD 267
>pir||A71086 hypothetical protein PH0950 - Pyrococcus horikoshii
>gi|3257364|dbj|BAA30047.1| (AP000004) 268aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 268
Score = 421 bits (1070), Expect = e-117
Identities = 209/267 (78%), Positives = 235/267 (87%)
Query: 1 MRRKSEGIALALIGMLLYGLEPVVISYNPVNPISFAFFSAFFASLILIPFADFLEVKAYW 60
M +SEG+ LALIGMLLYGLEPVVISYNPVNPISFAFFSAF ASLIL+PFA+F EVK W
Sbjct: 2 MEERSEGVILALIGMLLYGLEPVVISYNPVNPISFAFFSAFLASLILLPFANFEEVKVNW 61
Query: 61 RRGALIGFFGTFLAYLSYSFGAKMSSSVNAALITRAEVIFSFLLSYAILGERITRRRIIN 120
+RG IGFFGTFLAYL+YSFG KMSSSVNAALITR EV+FSF+LSY ILGE I++ RI
Sbjct: 62 KRGLFIGFFGTFLAYLAYSFGTKMSSSVNAALITRTEVLFSFILSYVILGEAISKSRIAY 121
Query: 121 STLVIIGVILVITQGRKISLNVGDFLLLLVPLFWQIGHVIAKKTNAKPQTIAFLRNSFGS 180
STLVIIGV+LV+TQG++++LN GD LLLLVPLFWQ+GHVIAK+T A PQTIA LRNSFG+
Sbjct: 122 STLVIIGVVLVMTQGKRVTLNPGDGLLLLVPLFWQMGHVIAKRTKAGPQTIALLRNSFGA 181
Query: 181 LFLLLPTLTTELSFTPYSIAEGLIIALGQLIWYSAISRIDLSLATAIITPAPAVAIGIAL 240
LFL +P L T +SFT YS+ EG+IIALGQLIWYSAI RIDLSLATAIITPAPAVAIGIAL
Sbjct: 182 LFLFVPALLTGISFTLYSVVEGVIIALGQLIWYSAIKRIDLSLATAIITPAPAVAIGIAL 241
Query: 241 ITGVPVTLWHLLGFIFITIGTLNLTRD 267
ITG PVT WH+ GF+FIT+GTL LTRD
Sbjct: 242 ITGTPVTPWHIFGFLFITVGTLGLTRD 268
>sp|P37511|YYAM_BACSU HYPOTHETICAL 32.9 KD PROTEIN IN TETB-EXOA INTERGENIC REGION
>gi|2127011|pir||S66005 conserved hypothetical protein
yyaM - Bacillus subtilis >gi|467365|dbj|BAA05211.1|
(D26185) unknown [Bacillus subtilis]
>gi|2636628|emb|CAB16118.1| (Z99124) similar to
hypothetical proteins [Bacillus subtilis]
Length = 305
Score = 79.6 bits (193), Expect = 4e-14
Identities = 61/257 (23%), Positives = 120/257 (45%), Gaps = 22/257 (8%)
Query: 27 YNPVNPISFAFFSAFFASLILIPFADFLEVKAYWRRGAL----IGFFGTFLAYLSYSFGA 82
++P + ++ F A LI++ F + ++ K+ R+ A+ +G G F + G
Sbjct: 31 FSPSSSAAWRFGLAAAVMLIILIFTEGIK-KSQLRKNAVSYIVLGIIGIFGFNALFFVGL 89
Query: 83 KMSSSVNAALITRAEVIFSFLLSYAILGERITRRRIINSTLVIIGVILVITQG-----RK 137
K +S VN ALI + + +L+ IL + +T+++++ IGV+LVITQG +
Sbjct: 90 KYTSPVNGALIMGLNPLLTAILARIILKDNMTKKQVLGIFFAFIGVLLVITQGSIETIKT 149
Query: 138 ISLNVGDFLLLLVPLFWQIGHVIAKK--TNAKPQTIAFLRNSFGSLFLLLPTLTT----E 191
+S++ GD ++ + W + V+ ++ + P + G++ L++ +L T
Sbjct: 150 LSISGGDLIIFTGNVCWALYGVLGRRFVKDGTPLSTTTYTMVIGAVSLIVVSLFTSKPVS 209
Query: 192 LSFTPYSIAEGLII------ALGQLIWYSAISRIDLSLATAIITPAPAVAIGIALITGVP 245
LS P + + LG L W I I S + P V + I+ G P
Sbjct: 210 LSNIPIGVWGAIAFMAFFTSVLGYLWWNQGIKEIGASKTSLFFNLVPVVTMIISFAVGTP 269
Query: 246 VTLWHLLGFIFITIGTL 262
+ ++ ++G + + +G L
Sbjct: 270 IKVFQVIGAVLVILGVL 286
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.145 0.423
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87721377
Number of Sequences: 2977
Number of extensions: 3445720
Number of successful extensions: 19663
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19657
Number of HSP's gapped (non-prelim): 4
length of query: 267
length of database: 189,106,746
effective HSP length: 52
effective length of query: 215
effective length of database: 157,985,422
effective search space: 33966865730
effective search space used: 33966865730
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 164 (68.3 bits)