BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1798 (PAB1798) DE:Hypothetical protein
(420 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75130 hypothetical protein PAB1798 - Pyrococcus abyssi (st... 849 0.0
sp|O58701|Y963_PYRHO HYPOTHETICAL PROTEIN PH0963 >gi|7447735|pir... 780 0.0
sp|Q58533|YB33_METJA HYPOTHETICAL PROTEIN MJ1133 >gi|2128046|pir... 353 3e-96
gi|11499233 conserved hypothetical protein [Archaeoglobus fulgid... 341 1e-92
sp|P22349|YPUE_METSM HYPOTHETICAL 46.2 KDA PROTEIN IN PURE 3'REG... 330 2e-89
sp|P41655|YD94_METTH HYPOTHETICAL PROTEIN MTH1394 (ORF-B(T)) >gi... 324 1e-87
sp|Q9YA60|YK78_AERPE HYPOTHETICAL PROTEIN APE2078 >gi|7447733|pi... 317 1e-85
sp|P72315|YCOM_RHORU HYPOTHETICAL 49.9 KDA PROTEIN IN COOM 5'REG... 178 8e-44
sp|Q9YBM7|YF71_AERPE HYPOTHETICAL PROTEIN APE1571 >gi|7449639|pi... 140 2e-32
gi|11497825 conserved hypothetical protein [Archaeoglobus fulgid... 139 7e-32
gb|AAK41165.1| Conserved hypothetical protein [Sulfolobus solfat... 138 1e-31
sp|P94405|YCLC_BACSU HYPOTHETICAL 53.0 KDA PROTEIN IN SFP-GERKA ... 132 5e-30
emb|CAC12324.1| (AL445066) 4-hydroxybenzoate decarboxylase relat... 132 7e-30
sp|P72861|Y936_SYNY3 HYPOTHETICAL 55.2 KDA PROTEIN SLL0936 >gi|7... 132 7e-30
gb|AAD50377.1|AF128880_1 (AF128880) 4-hydroxybenzoate decarboxyl... 131 1e-29
pir||D82991 conserved hypothetical protein PA5237 [imported] - P... 130 4e-29
gb|AAG14972.1|AF242208_5 (AF242208) unknown [Escherichia coli] 128 1e-28
pir||T44997 conserved hypothetical protein yclC [imported] - Esc... 127 3e-28
gb|AAG14978.1|AF242209_3 (AF242209) unknown [Escherichia coli] >... 127 3e-28
gb|AAG14985.1|AF242210_4 (AF242210) unknown [Escherichia coli] 127 3e-28
emb|CAC12688.1| (AJ272115) hypothetical protein [Thauera aromatica] 125 9e-28
sp|O67542|YG12_AQUAE HYPOTHETICAL PROTEIN AQ_1612 >gi|7449638|pi... 123 3e-27
emb|CAC12691.1| (AJ272115) hypothetical protein [Thauera aromatica] 120 4e-26
gi|10957002 unknown [Sphingomonas aromaticivorans] >gi|11279992|... 118 9e-26
sp|P26615|YIGC_ECOLI HYPOTHETICAL 55.6 KDA PROTEIN IN RFAH-RFE I... 116 3e-25
pir||H81051 conserved hypothetical protein NMB1694 [imported] - ... 116 5e-25
gb|AAF33412.1| (AF233324) 92% identity to E. coli hyopthetical p... 116 5e-25
sp|Q9X697|VDCC_STRD7 VDCC PROTEIN >gi|4741969|gb|AAD28782.1|AF13... 111 1e-23
pir||F81823 conserved hypothetical protein NMA1952 [imported] - ... 110 3e-23
sp|Q9ZCD6|Y821_RICPR HYPOTHETICAL PROTEIN RP821 >gi|7449635|pir|... 107 2e-22
emb|CAC11330.1| (AL445063) conserved hypothetical protein [Therm... 106 7e-22
gb|AAF00115.1|AF141971_2 (AF141971) oxidoreductase homolog [Haem... 102 8e-21
pir||G82338 conserved hypothetical protein VC0309 [imported] - V... 96 7e-19
pir||A75533 conserved hypothetical protein - Deinococcus radiodu... 94 2e-18
sp|O34023|Y66K_CHLPS HYPOTHETICAL 66.2 KDA PROTEIN (ORFF) >gi|24... 94 4e-18
emb|CAB92111.1| (AL356334) conserved hypothetical protein SCD69.... 90 3e-17
sp|O84087|Y085_CHLTR HYPOTHETICAL PROTEIN CT085 >gi|7468628|pir|... 83 5e-15
pir||F81711 conserved hypothetical protein TC0359 [imported] - C... 79 1e-13
gi|6320748 Ydr539wp [Saccharomyces cerevisiae] >gi|6686209|sp|Q0... 75 1e-12
sp|Q9Z8L0|Y328_CHLPN HYPOTHETICAL PROTEIN CPN0328/CP0429 >gi|746... 74 3e-12
pir||S20905 hypothetical protein (hlyT 5' region) - Escherichia ... 73 6e-12
pir||S30733 hypothetical protein o394 - Escherichia coli >gi|148... 73 6e-12
pir||D83614 conserved hypothetical protein PA0254 [imported] - P... 72 1e-11
>pir||E75130 hypothetical protein PAB1798 - Pyrococcus abyssi (strain Orsay)
>gi|5458269|emb|CAB49758.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 420
Score = 849 bits (2169), Expect = 0.0
Identities = 420/420 (100%), Positives = 420/420 (100%)
Query: 1 MLREILERFDDLVVIEKPVSKEIEITKFLLKYKDKPILFKDVEGWEVAGNVWSTRERIAK 60
MLREILERFDDLVVIEKPVSKEIEITKFLLKYKDKPILFKDVEGWEVAGNVWSTRERIAK
Sbjct: 1 MLREILERFDDLVVIEKPVSKEIEITKFLLKYKDKPILFKDVEGWEVAGNVWSTRERIAK 60
Query: 61 FLSTDNKGLLEILYRAIENPKEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFTSA 120
FLSTDNKGLLEILYRAIENPKEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFTSA
Sbjct: 61 FLSTDNKGLLEILYRAIENPKEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFTSA 120
Query: 121 MVIAKKDFVNVSFHRMMVLDEERAAIRLVPRHLYSMWKDSVEHGEELEVRIVVGNPVHLL 180
MVIAKKDFVNVSFHRMMVLDEERAAIRLVPRHLYSMWKDSVEHGEELEVRIVVGNPVHLL
Sbjct: 121 MVIAKKDFVNVSFHRMMVLDEERAAIRLVPRHLYSMWKDSVEHGEELEVRIVVGNPVHLL 180
Query: 181 LAGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPVPVESEFVFKAKITDELVDEGP 240
LAGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPVPVESEFVFKAKITDELVDEGP
Sbjct: 181 LAGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPVPVESEFVFKAKITDELVDEGP 240
Query: 241 FVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVV 300
FVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVV
Sbjct: 241 FVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVV 300
Query: 301 PKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDR 360
PKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDR
Sbjct: 301 PKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDR 360
Query: 361 EVEWAIATRFQPDRDLVIISNARGSSLDPSGSDGLTAKWGIDATKPLNKKGEFERVKLYS 420
EVEWAIATRFQPDRDLVIISNARGSSLDPSGSDGLTAKWGIDATKPLNKKGEFERVKLYS
Sbjct: 361 EVEWAIATRFQPDRDLVIISNARGSSLDPSGSDGLTAKWGIDATKPLNKKGEFERVKLYS 420
>sp|O58701|Y963_PYRHO HYPOTHETICAL PROTEIN PH0963 >gi|7447735|pir||F71087 hypothetical
protein PH0963 - Pyrococcus horikoshii
>gi|3257377|dbj|BAA30060.1| (AP000004) 424aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 424
Score = 780 bits (1992), Expect = 0.0
Identities = 374/418 (89%), Positives = 402/418 (95%)
Query: 1 MLREILERFDDLVVIEKPVSKEIEITKFLLKYKDKPILFKDVEGWEVAGNVWSTRERIAK 60
MLREI+E F+DLVVI+KPV KE+E+TKFLLKYKDKP+LFKDVEGWEVAGN+WS+RERIAK
Sbjct: 5 MLREIVESFEDLVVIDKPVKKELELTKFLLKYKDKPVLFKDVEGWEVAGNLWSSRERIAK 64
Query: 61 FLSTDNKGLLEILYRAIENPKEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFTSA 120
FL+TDNKGLLE+LY A+E PK ++VV+KAEFLKN+E VNLLELPIP+YYPKDGG Y TSA
Sbjct: 65 FLNTDNKGLLELLYEAMEKPKPFSVVEKAEFLKNREKVNLLELPIPKYYPKDGGPYLTSA 124
Query: 121 MVIAKKDFVNVSFHRMMVLDEERAAIRLVPRHLYSMWKDSVEHGEELEVRIVVGNPVHLL 180
MVIAKK+FVNVSFHRMMVLDEERA IRLVPRHLYSMWKDSVEHGEELEVRIV+GNPVHLL
Sbjct: 125 MVIAKKEFVNVSFHRMMVLDEERAVIRLVPRHLYSMWKDSVEHGEELEVRIVLGNPVHLL 184
Query: 181 LAGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPVPVESEFVFKAKITDELVDEGP 240
LAGATSVAYGVSELEIASAISL+AFG+P+EV+NLDGIP PV+SEFVFKAKITDE+ DEGP
Sbjct: 185 LAGATSVAYGVSELEIASAISLKAFGRPLEVINLDGIPTPVDSEFVFKAKITDEVADEGP 244
Query: 241 FVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVV 300
FVDITGTYDIVRKQP+V+FEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVV
Sbjct: 245 FVDITGTYDIVRKQPIVIFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVV 304
Query: 301 PKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDR 360
PKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDR
Sbjct: 305 PKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDR 364
Query: 361 EVEWAIATRFQPDRDLVIISNARGSSLDPSGSDGLTAKWGIDATKPLNKKGEFERVKL 418
EVEWAIATRFQPDRDLVII NARGSSLDPSG DGLTAKWGIDATKPL+KK EFE+ L
Sbjct: 365 EVEWAIATRFQPDRDLVIIPNARGSSLDPSGKDGLTAKWGIDATKPLDKKKEFEKASL 422
>sp|Q58533|YB33_METJA HYPOTHETICAL PROTEIN MJ1133 >gi|2128046|pir||D64441 hypothetical
protein homolog MJ1133 - Methanococcus jannaschii
>gi|1499986|gb|AAB99135.1| (U67556) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 421
Score = 353 bits (895), Expect = 3e-96
Identities = 202/427 (47%), Positives = 277/427 (64%), Gaps = 19/427 (4%)
Query: 2 LREILERFDDLVVIEKPVSKEIEITKFLLKYKDKPILFKDVEGWEVAGNVWSTRERIAKF 61
+REI+ + + +++ + K+ +++ L KY KP+ KDV G+EV GN+ S RE ++K
Sbjct: 1 MREIINKLNPIIIDK--ADKKFGVSRILKKYDGKPVYIKDVNGFEVVGNLCS-RETLSKI 57
Query: 62 LSTDNKGLLEILYRAIENPKEYAVVDKAEFLKNKESV----NLLELPIPRYYPKDGGHYF 117
+ + + + A+E KE + + LK K V N+ PIP YY KD G Y
Sbjct: 58 FNVKKEDFIFFMLDAMEKEKEGKLKINNK-LKEKYIVEIPENIKNWPIPIYYEKDAGAYI 116
Query: 118 TSAMVIA-KKDF-VNVSFHRMMVLDEERAAIRLVPRHLYSMWKDSVEHGEELEVRIVVGN 175
TS +V+ KD+ N+S HR++V D+ + RHL+ ++ +++ L+V IV+G
Sbjct: 117 TSGVVVVYDKDYGYNLSIHRILVKDDYLVIRMVEQRHLHFLYNKALKEKGYLDVAIVIGV 176
Query: 176 PVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVVNLD-GIPVPVESEFVFKAKITDE 234
+LLAG+TS EL+ A+A+ G + V LD G+ VP E+EF+ + KI E
Sbjct: 177 HPAVLLAGSTSADITFDELKFAAAL----LGGEIGVFELDNGLLVP-EAEFIIEGKILPE 231
Query: 235 LVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYA 294
+ DEGPFVDITGTYDIVRKQP++ E++Y + PIFHALLPGG EH LMG+P+EP+I
Sbjct: 232 VDDEGPFVDITGTYDIVRKQPIIKIEKLYRKEKPIFHALLPGGIEHKTLMGMPQEPRILK 291
Query: 295 SVKKVVPKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDV 354
V+ VP V + LTEGGC WLHAVV I K+ EGDGKNAILAAFA HPSLK V+VVD+D+
Sbjct: 292 GVRNTVPTVKNIVLTEGGCCWLHAVVQIEKRTEGDGKNAILAAFASHPSLKHVIVVDDDI 351
Query: 355 NIYDDREVEWAIATRFQPDRDLVIISNARGSSLDPSG--SDGLTAKWGIDATKPLNKKGE 412
NI+D +VE+AIATR Q D+D+VIIS A+GSSLDPS + LTAK G+DAT L K E
Sbjct: 352 NIFDINDVEYAIATRVQGDKDIVIISGAKGSSLDPSSDLKNKLTAKVGVDATMSLIKGRE 411
Query: 413 -FERVKL 418
FER K+
Sbjct: 412 HFERAKI 418
>gi|11499233 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6686190|sp|O28630|YG43_ARCFU HYPOTHETICAL PROTEIN
AF1643 >gi|7447732|pir||B69455 conserved hypothetical
protein AF1643 - Archaeoglobus fulgidus
>gi|2648907|gb|AAB89599.1| (AE000989) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 426
Score = 341 bits (865), Expect = 1e-92
Identities = 199/415 (47%), Positives = 261/415 (61%), Gaps = 20/415 (4%)
Query: 11 DLVVIEKPVSKEIEITK----FLLKYK---DKPILFKDVEGWEVAGNVWSTRERIAKFLS 63
D + + PV E EI LK K DKP++ +VEG +VA N S+RE + K+L
Sbjct: 22 DAISVANPVQLEEEIKHDEVVSFLKSKNLLDKPVIL-NVEGKKVAKNFVSSRETLGKYLG 80
Query: 64 TDNKGLLEILYRAIENPKEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFTSAMVI 123
D + L + + E V + K VNL ELP+ +Y+P+DGG Y T+ +VI
Sbjct: 81 VDAYSIARELSKIEDREAEIRVEPFSSLAMKKVDVNLQELPVIKYFPRDGGRYITAGIVI 140
Query: 124 AKKDFV-NVSFHRMMVLDEERAAIRLVP-RHLYSMWKDSVEHGEELEVRIVVGNPVHLLL 181
A+++ V N S HRM++LDE R A RLVP RH Y MW+++VE EELEV +V+G L
Sbjct: 141 AQRNGVYNASIHRMLLLDESRVAARLVPPRHTYLMWREAVEREEELEVAVVIGTHPLFLF 200
Query: 182 AGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPVPVESEFVFKAKITDELVDEGPF 241
A AT V G A + + E++ VP +SE + +IT E EGPF
Sbjct: 201 ASATRVPSGKEFSYAAGLMGRLTLYRKGEML------VP-DSEIILFGRITAETAKEGPF 253
Query: 242 VDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVVP 301
VDITGTYDIVR +PV+VF+EMY +D I++++ P G EH MLMG+P EP IY V V
Sbjct: 254 VDITGTYDIVRDEPVIVFDEMYVKEDYIYYSITPAGKEHQMLMGVPYEPVIYRFVSNVC- 312
Query: 302 KVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDRE 361
KV V T G C + H VV I K+ EGDGKNAI+AA A +PS+K VVVVD+D++I +
Sbjct: 313 KVKNVITTPGSCHYFHCVVQIEKKSEGDGKNAIIAALAANPSMKGVVVVDDDIDILSYED 372
Query: 362 VEWAIATRFQPDRDLVIISNARGSSLDPSGSDGLTAKWGIDATKPLNKKGEFERV 416
+E+AIATRFQPDRDLV++ ARGSSLDPS +D T+KWGIDATKPL K+G F+RV
Sbjct: 373 MEFAIATRFQPDRDLVVVKGARGSSLDPS-ADKTTSKWGIDATKPLGKEG-FDRV 425
>sp|P22349|YPUE_METSM HYPOTHETICAL 46.2 KDA PROTEIN IN PURE 3'REGION (ORFB)
>gi|322337|pir||S28657 hypothetical protein B -
Methanobrevibacter smithii >gi|44543|emb|CAA26423.1|
(X02586) ORFB (aa 1-418) [Methanobrevibacter smithii]
Length = 418
Score = 330 bits (837), Expect = 2e-89
Identities = 175/416 (42%), Positives = 269/416 (64%), Gaps = 16/416 (3%)
Query: 10 DDLVVIEKPVSKEIEITKFLLKYKDKPILFKDVEGWE--VAGNVWSTRERIAKFLSTDNK 67
++++ I +S E E+ K L KY ++ K+V+G++ + + +TRE+IAK ++ +
Sbjct: 6 ENIIEITTELSSEFEVAKELRKYPKDTVIIKNVKGYDLPIISGICNTREKIAKSINCEVS 65
Query: 68 GLLEILYRAIENP-KEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFTSAMVIAKK 126
+ + + A +NP K D +++ N NL ++PI +Y +DGG Y T+ +V A+
Sbjct: 66 EITQKIIEASDNPIKVDKFTDFSDY--NTTEANLDKIPILTHYKRDGGKYITAGVVFARD 123
Query: 127 D---FVNVSFHRMMVLDEERAAIRLVPRHLYSMWKDSVEHGEELEVRIVVGNPVHLLLAG 183
N S HRM+VLD++R IR+VPR+LY+ ++ + + G++LE+ I +G +LLA
Sbjct: 124 PETGIQNASIHRMLVLDDKRLVIRIVPRNLYTYFQKAQKLGKDLEIAIAIGMDPAILLAS 183
Query: 184 ATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPVPVESEFVFKAKIT-DELVDEGPFV 242
TS+ +E+++A+A + ++ + VP +++ + + KI+ E EGPFV
Sbjct: 184 TTSIPIDYNEMDVANAFK----NGELTLIKCGDLEVP-QADIILEGKISVSETSAEGPFV 238
Query: 243 DITGTYDIVRKQPVVVFEEMY-HVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVVP 301
D+T TYDI+R QP++ +M+ D+P +H +L G+EH +L GLP+EP+I+ SVK VP
Sbjct: 239 DLTDTYDIIRDQPIINLSKMHIKKDNPHYHGILSAGFEHKLLQGLPQEPRIFKSVKNAVP 298
Query: 302 KVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDRE 361
V V LTEGGC WLHA +SI KQ EGDGKNAI+AA + HPSLK VVVD DV+++D ++
Sbjct: 299 TVENVVLTEGGCCWLHAAISINKQTEGDGKNAIMAALSAHPSLKHAVVVDTDVDVFDPQD 358
Query: 362 VEWAIATRFQPDRDLVIISNARGSSLDP-SGSDGLTAKWGIDATKPLNKKGEFERV 416
+E+AIATR + DRDL+I+ N RGSSLDP + SDG T K G+DATK L +FERV
Sbjct: 359 IEYAIATRVKGDRDLMIVPNVRGSSLDPVAESDGTTTKIGLDATKSLKTLDKFERV 414
>sp|P41655|YD94_METTH HYPOTHETICAL PROTEIN MTH1394 (ORF-B(T)) >gi|7447731|pir||E69052
conserved hypothetical protein MTH1394 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622505|gb|AAB85871.1| (AE000902) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 423
Score = 324 bits (821), Expect = 1e-87
Identities = 178/424 (41%), Positives = 265/424 (61%), Gaps = 14/424 (3%)
Query: 2 LREILERF-DDLVVIEKPVSKEIEITKFLLKYKDKPILFKDVEGWE--VAGNVWSTRERI 58
+R L++ ++ +V+E VS E L ++ ++ K+++ + V + +TRE+I
Sbjct: 1 MRNFLDKIGEEALVVEDEVSTSFEAASILREHPRDLVILKNLKESDIPVISGLCNTREKI 60
Query: 59 AKFLSTDNKGLLEILYRAIENPKEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFT 118
A L+ + + A+ENP + V + ++ + +L ELPI R+Y +DGG Y T
Sbjct: 61 ALSLNCRVHEITHRIVEAMENPTPISSVGGLDGYRSGRA-DLSELPILRHYRRDGGPYIT 119
Query: 119 SAMVIAKKDFV---NVSFHRMMVLDEERAAIRLVPRHLYSMWKDSVEHGEELEVRIVVGN 175
+ ++ A+ N S HRMMV+ ++R A+R+VPRHLY+ + + E GE+LE+ I +G
Sbjct: 120 AGVIFARDPDTGVRNASIHRMMVIGDDRLAVRIVPRHLYTYLQKAEERGEDLEIAIAIGM 179
Query: 176 PVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPVPVE-SEFVFKAKITDE 234
LLA TS+ E+E+A+ +E+V +G+ + V +E + + +I
Sbjct: 180 DPATLLATTTSIPIDADEMEVANTFH----EGELELVRCEGVDMEVPPAEIILEGRILCG 235
Query: 235 LVD-EGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIY 293
+ + EGPFVD+T TYD+VR +PV+ E M+ D ++HA+LP G+EH +L GLP+EP+IY
Sbjct: 236 VREREGPFVDLTDTYDVVRDEPVISLERMHIRKDAMYHAILPAGFEHRLLQGLPQEPRIY 295
Query: 294 ASVKKVVPKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDED 353
+VK VP V V LTEGGC WLHA VSI KQ EGDGKN I+AA A HPSLK VVVVDED
Sbjct: 296 RAVKNTVPTVRNVVLTEGGCCWLHAAVSIKKQTEGDGKNVIMAALAAHPSLKHVVVVDED 355
Query: 354 VNIYDDREVEWAIATRFQPDRDLVIISNARGSSLDPSG-SDGLTAKWGIDATKPLNKKGE 412
+++ D E+E+AIATR + D D++I+ ARGSSLDP+ DG T K G+DAT PL +
Sbjct: 356 IDVLDPEEIEYAIATRVKGDDDILIVPGARGSSLDPAALPDGTTTKVGVDATAPLASAEK 415
Query: 413 FERV 416
F+RV
Sbjct: 416 FQRV 419
>sp|Q9YA60|YK78_AERPE HYPOTHETICAL PROTEIN APE2078 >gi|7447733|pir||A72513 hypothetical
protein APE2078 - Aeropyrum pernix (strain K1)
>gi|5105777|dbj|BAA81089.1| (AP000063) 437aa long
hypothetical protein [Aeropyrum pernix]
Length = 437
Score = 317 bits (804), Expect = 1e-85
Identities = 185/414 (44%), Positives = 257/414 (61%), Gaps = 17/414 (4%)
Query: 14 VIEKPVSKEIEITKFLLKYKD-KPILFKDVEGWE--VAGNVWSTRERIAKFLST--DNKG 68
V+++ +S+E E+ + + + + P L +EG VA NV TRE++ K L D++
Sbjct: 17 VVDRTLSREYEVARLIAETQGCGPPLLARIEGVRQPVAVNVVDTREKLYKALGVTGDSEA 76
Query: 69 LLEILYRAIENPKEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFTSAMVIAKKDF 128
+I+ + P VDK + E LP R+Y + G Y +S +VIA +
Sbjct: 77 YAKIVDSTMR-PGRLEYVDKPPLDEMPEGFE--GLPAARFYEGEAGLYLSSGIVIACYEG 133
Query: 129 V-NVSFHRMMVLDEERAAIRLVPRHLYSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSV 187
V N S HR+++L ERAAIR+VPRHL+ +++ + E GE+L +VVG +LLA ATS
Sbjct: 134 VCNASIHRLLILGRERAAIRIVPRHLWHLYRKARERGEDLPATVVVGLHPAVLLAAATSP 193
Query: 188 AYGVSELEIASAI---SLEAFGKPVEVVNLDGIPVPVESEFVFKAKITDELVDEGPFVDI 244
GV EL +A+ + S++ + PV G PVP+ + V IT E V+EGP+VD
Sbjct: 194 PLGVFELGLAAGMLGGSMKVYRSPVH-----GNPVPLGAAMVADVWITGEQVEEGPYVDA 248
Query: 245 TGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVVPKVH 304
TYD VR+QPVV E Y + H ++ G EH LMG P+E I+ +V++ +P+V
Sbjct: 249 LLTYDRVRRQPVVRLEAAYIKEGEYTHTIMGGSLEHVNLMGFPREASIWEAVRRALPRVR 308
Query: 305 GVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDREVEW 364
VRLT WLHAV+++ KQHEGDGK AI+AAFA HPSLK VVVVD DV++ D +VEW
Sbjct: 309 AVRLTPASGGWLHAVIAVEKQHEGDGKTAIMAAFAAHPSLKHVVVVDSDVDVDDPMQVEW 368
Query: 365 AIATRFQPDRDLVIISNARGSSLDPSGSDGLTAKWGIDATKPLNKKGEFERVKL 418
AIATRFQ D+DLVII ARGS+LDPS +DGLTAK G+DATKPL+ +ER ++
Sbjct: 369 AIATRFQADKDLVIIPRARGSTLDPSAADGLTAKMGLDATKPLDAGMGYERGRI 422
>sp|P72315|YCOM_RHORU HYPOTHETICAL 49.9 KDA PROTEIN IN COOM 5'REGION
>gi|11279280|pir||T51313 hypothetical protein [imported]
- Rhodospirillum rubrum >gi|1515465|gb|AAC45115.1|
(U65510) unknown [Rhodospirillum rubrum]
Length = 463
Score = 178 bits (448), Expect = 8e-44
Identities = 141/431 (32%), Positives = 210/431 (48%), Gaps = 24/431 (5%)
Query: 6 LERFDDLVVIEKPVSKEIEITKFLLKYKDKP--ILFKDVEG--WEVAGNVWSTRERIAKF 61
LE LV + V ++ +++ P +LF+ V G + V ++ +RE +
Sbjct: 22 LEALGRLVRVRSEVDPRHDLAGIAARFEGGPQAVLFEKVAGHAYPVFVGLYWSRELLGAL 81
Query: 62 LSTDNKGLLEILYRAIEN----PKEYAVVDKAEFLKNKES-VNLLELPIPRYYPKDGGHY 116
L + + +I++ P + VV L+ E+ V+L LPIP + +DGG Y
Sbjct: 82 FDQPETALPQHVAASIKSWQSAPVDPLVVADGPVLEVTEAEVDLSTLPIPIHALEDGGPY 141
Query: 117 FTSAMVIAKKDFV---NVSFHRMMVLDEERAAIRL-VPRHLYSMWKDSVEHGEELE--VR 170
F +A+VIAK N S R V+ ++R I + RHL + GE L +
Sbjct: 142 FDAAVVIAKDPETGVRNASIQRFQVIGKDRLVINIDAGRHLGLYLDKAAARGEPLAFTLN 201
Query: 171 IVVGNPVHLLLAGATSVA-YGVSELEIASAISLEAFGKPVEVVNLDGIPVPVESEFVFKA 229
+ VG VH A A EL IASA G P+E+V PV + + ++
Sbjct: 202 VGVGPGVHFAAAAPAEAAPVETDELGIASAFH----GAPLELVAGTVGPVEMVAHAMWAL 257
Query: 230 KIT---DELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGL 286
+ E+ EGPF ++TG Y V +P+V + ++ PIFH LL G E + +GL
Sbjct: 258 ECEIRPGEVHAEGPFAEVTGYYARVEPRPLVRVKRIHRRRAPIFHTLLSGA-EVFNSVGL 316
Query: 287 PKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSLKR 346
E + A ++ VP V V + GGC + H VV I ++ G K AILA FA P LK
Sbjct: 317 LGEANVLALLRVQVPGVEDVYFSHGGCGFYHCVVKIAQKRAGWAKQAILATFAAFPPLKM 376
Query: 347 VVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGSSLDPSGSDGLTAKWGIDATKP 406
V VVDEDV+I + R+VEWA+ TR +++I NA G L+P+ + L K G D T+P
Sbjct: 377 VTVVDEDVDIRNGRDVEWAMTTRLDAKTGILVIENAFGHGLNPTFPNYLGTKVGFDCTRP 436
Query: 407 LNKKGEFERVK 417
F+R K
Sbjct: 437 FPHTPAFDRAK 447
>sp|Q9YBM7|YF71_AERPE HYPOTHETICAL PROTEIN APE1571 >gi|7449639|pir||F72535 hypothetical
protein APE1571 - Aeropyrum pernix (strain K1)
>gi|5105258|dbj|BAA80571.1| (AP000062) 469aa long
hypothetical protein [Aeropyrum pernix]
Length = 469
Score = 140 bits (350), Expect = 2e-32
Identities = 116/409 (28%), Positives = 205/409 (49%), Gaps = 41/409 (10%)
Query: 37 ILFKDV---EGWEVAGNVWSTRERIAKFLSTDNKGLL-EILYRAIENPKEYAVVDKAEFL 92
+LF+ V EG+ +AGN++ + + + + L + ++ E L+ ++ P + K L
Sbjct: 31 VLFEKVKGHEGFRIAGNIFCSLDVVRQALGVERLEVIGERLFEPLKGPPPLGIGGKLRSL 90
Query: 93 KNKESV---------------NLLE--------LPIPRYYPKDGGHYFTSAMVIAK---K 126
S+ N+LE +P + +PKDGG Y T A+V + +
Sbjct: 91 GEVLSLGKYMPKAVGRAGFTANVLEGREASFNLIPAFKVWPKDGGRYLTYALVHVRDPVR 150
Query: 127 DFVNVSFHRMMVLDEERAAIRL-VPRHLYSMWKDSVEHGEE-LEVRIVVGNPVHLLLAGA 184
+N+ +R+M+ ++ + + + +DSVE GE + +V+G+ LL GA
Sbjct: 151 GVMNMGVYRVMIAGDKEGVVHWQIHKRGMQAQQDSVEKGERRIPAALVIGSDPGTLLTGA 210
Query: 185 TSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPVPVESEFVFKAKIT-DELVDEGPFVD 243
V Y + + A + E G PV + +GI VP +E V + I ++L +EGP+ D
Sbjct: 211 MPVPYPIDKHLFAGVVRGE--GLPVYRLP-NGIHVPANAEIVLEGYIDLEDLREEGPYGD 267
Query: 244 ITGTYDIV-RKQPVVVFEEMYHVDDPIFHALLPGGYE-HYMLMGLPKEPQIYASVKKVVP 301
G YD R P E ++H ++PI++ + G +++G E +++ ++P
Sbjct: 268 HFGYYDKPSRLFPTFRLERVWHREEPIYYGSVTGKPPLEDVVIGKFAERIFLPAIQTLLP 327
Query: 302 KVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFA-GHPSL-KRVVVVDEDVNIYDD 359
+V + L G A VSI K++ G GK A+LA G SL K +VVVD D+N++D
Sbjct: 328 EVVDIDLPPHGVFQGMAFVSIRKRYPGHGKKALLALMGLGQLSLTKIIVVVDHDINVHDV 387
Query: 360 REVEWAIATRFQPDRDLVIISNARGSSLDPSGSDGL-TAKWGIDATKPL 407
+V WA+++ P RD++++ ++ LDP+ + +K GIDAT+ L
Sbjct: 388 NQVIWAVSSHVDPQRDVLVVPHSHTDELDPATPTPMYGSKLGIDATRKL 436
>gi|11497825 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|6686084|sp|O30030|Y209_ARCFU HYPOTHETICAL PROTEIN
AF0209 >gi|7449637|pir||A69276 conserved hypothetical
protein AF0209 - Archaeoglobus fulgidus
>gi|2650432|gb|AAB91023.1| (AE001091) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 481
Score = 139 bits (346), Expect = 7e-32
Identities = 131/451 (29%), Positives = 209/451 (46%), Gaps = 40/451 (8%)
Query: 2 LREILERFDDLVVIEK------PVSKEIEITKFLLKYKDKPILFKDVEGWEVAG--NVWS 53
LRE + R +D + + P+ + E+ +K K +LF+ +G+++ N +
Sbjct: 6 LREFIGRLEDKGELARVKHEVSPILEMSEVADRTVKAGGKALLFERPKGYDIPVFMNAFG 65
Query: 54 TRERIAKFLSTDN-KGLLEILYRAIE-NPKEYA--------VVDKAEFLKNKE------- 96
T R+ L + + + E L A+E P + + D F+ K
Sbjct: 66 TERRMKLALEVERLEEIGERLLSALEFRPSSFMDALKGVGMLKDFMSFIPKKTGKAPCKE 125
Query: 97 --SVNLLELPIPRYYPKDGGHYFTSAMVIAKKDF---VNVSFHRMMVLDEERAAIRL-VP 150
+ +L + PI + +PKD G + T +VI K +N +RM V D + + +
Sbjct: 126 VVAESLDKFPILKCWPKDAGRFITFPVVITKDPETGEMNAGMYRMQVFDGKTTGMHWQIH 185
Query: 151 RHLYSMWKDSVEHGE-ELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPV 209
+H ++ E G ++EV + +G L A + G+SE A I E K
Sbjct: 186 KHGAEHFRKMAEKGGGKIEVAVAIGVDPATLYAATAPLPSGISEFMFAGFIRKERL-KVT 244
Query: 210 EVVNLDGIPVPVESEFVFKAKI-TDELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDP 268
E +D + VP +E + + + DE+ EGPF D TG Y PV + H ++P
Sbjct: 245 ECETVD-LLVPANAEIILEGYVRVDEMRVEGPFGDHTGYYTPPEPYPVFHITHITHRENP 303
Query: 269 IFHALLPGGYE-HYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVSITKQHE 327
I+HA + G +G E ++ + P++ + L G A+VSI K++
Sbjct: 304 IYHATVVGKPPMEDAWLGKATERIFLPILRMMHPEIVDINLPVEGAFHNLAIVSIKKRYP 363
Query: 328 GDGKNAILAAFA-GHPSL-KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGS 385
G K + A + G SL K VVVVD+DVN++D REV WA+ +RF P RD+VI+ +
Sbjct: 364 GQAKKVMYAIWGTGMLSLTKIVVVVDDDVNVHDMREVVWAVTSRFDPARDVVILPPSPTD 423
Query: 386 SLDPSG-SDGLTAKWGIDATKPLNKKGEFER 415
SLD S L K GIDATK +G +ER
Sbjct: 424 SLDHSAYIPNLAGKLGIDATKKWRDEG-YER 453
>gb|AAK41165.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 488
Score = 138 bits (344), Expect = 1e-31
Identities = 124/447 (27%), Positives = 208/447 (45%), Gaps = 49/447 (10%)
Query: 4 EILERFDDLVVIEKPVSKEIEITKFLLKYKDK---PILFKDV---EGWEVAGNVWSTRER 57
E +++ L+ ++ VS ++EI + K P+LFK V E W++ N++ + E
Sbjct: 18 EFMKKKGKLIEVDDEVSVDLEIAEITRKATYAHLPPLLFKRVKNYENWKIVSNIFYSIES 77
Query: 58 IAKFLSTDN-----------------------KGLLEILYRAIENPKEYAVVDKAEFLKN 94
+ + T+ K L EIL PK K+ K
Sbjct: 78 LYEIFGTNKLESISEGFLSNLSNMPITFFDKIKSLREILGLGKVMPKA-----KSPSFKE 132
Query: 95 KESVNLLELPIPRYYPKDGGHYFTSAMVIAKK---DFVNVSFHRMMVLDEERAAIRLVPR 151
+++++L ++P + +PKD G Y T ++ I K D N+S +R+ +L+E+ A I
Sbjct: 133 EKNLDLTKIPAIKTWPKDAGRYLTFSITITKDPETDVHNLSVYRVQILNEKEAIIHWQAF 192
Query: 152 HLYSMW-KDSVEHG-EELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPV 209
++ K +E G ++ + +V G + A+ V +G+ + A + G+ +
Sbjct: 193 KRGALTAKKYLEKGISKIPIAVVTGVDPAIAFTAASPVPHGIDKYMFAGILR----GEGI 248
Query: 210 EVVNLDG-IPVPVESEFVFKAKIT-DELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDD 267
+V LD + VP SE V + +++ EGPF D G Y PV E +Y +D
Sbjct: 249 DVAELDNQLLVPSHSEVVLTGYVDLNDMRLEGPFGDHMGYYTPADYYPVFKLERVYIRED 308
Query: 268 PIFHALLPGGYE-HYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVSITKQH 326
PIFH G +G E K +VP++ + L E G + SI K +
Sbjct: 309 PIFHVTSVGKPPLEDAWIGKAVERIFLPFAKMLVPELIDMNLPEYGLFTGIGIFSIKKYY 368
Query: 327 EGDGKNAILAAFA-GHPSL-KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARG 384
G K ++A + G SL K ++VVD+D++++D +V +AIA P RD+ +I NA
Sbjct: 369 PGQAKRVMMALWGTGQLSLLKIIIVVDQDIDVHDINQVIYAIAANVDPKRDVWVIENALT 428
Query: 385 SSLDPS-GSDGLTAKWGIDATKPLNKK 410
SLDPS L +K GIDAT+ ++
Sbjct: 429 DSLDPSVPFPPLGSKLGIDATRKFKEE 455
>sp|P94405|YCLC_BACSU HYPOTHETICAL 53.0 KDA PROTEIN IN SFP-GERKA INTERGENIC REGION
>gi|7449640|pir||H69761 conserved hypothetical protein
yclC - Bacillus subtilis >gi|1805435|dbj|BAA08997.1|
(D50453) homologue of hypothetical protein of E. coli
[Bacillus subtilis] >gi|2632650|emb|CAB12158.1| (Z99105)
similar to hypothetical proteins [Bacillus subtilis]
>gi|2632665|emb|CAB12172.1| (Z99106) similar to
hypothetical proteins [Bacillus subtilis]
Length = 473
Score = 132 bits (330), Expect = 5e-30
Identities = 127/438 (28%), Positives = 201/438 (44%), Gaps = 44/438 (10%)
Query: 6 LERFDDLVVIEKPVSKEIEITKFL-----LKYKDKPILFKDVEGWE---VAGNVWSTRER 57
LE+ L+ + + V E ++ L K +LF ++ G+ +A NV +
Sbjct: 13 LEKEGQLLTVNEEVKPEPDLGASARAASNLGDKSPALLFNNIYGYHNARIAMNVIGSWPN 72
Query: 58 IAKFLSTDN-----KGLLEILYRAIENPKEYAVVDKAEFLKNK--ESVNLLE-LPIPRYY 109
A L + E R + P + A F +N+ E +NL + LP+ R
Sbjct: 73 HAMMLGMPKDTPVKEQFFEFAKRYDQFPMPVKREETAPFHENEITEDINLFDILPLFRIN 132
Query: 110 PKDGGHYFTSAMVIAKK-------DFVNVSFHRMMVLDEERAAIRLVPRHLYSMW-KDSV 161
DGG+Y A VI++ NV +RM V ++R I+ VP+H ++ + +
Sbjct: 133 QGDGGYYLDKACVISRDLEDPDNFGKQNVGIYRMQVKGKDRLGIQPVPQHDIAIHLRQAE 192
Query: 162 EHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVVN--LDGIPV 219
E G L V I +G + A +T + Y SE E+A AI G+P +V L + V
Sbjct: 193 ERGINLPVTIALGCEPVITTAASTPLLYDQSEYEMAGAIQ----GEPYRIVKSKLSDLDV 248
Query: 220 PVESEFVFKAKI-TDELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPG-- 276
P +E V + +I E EGPF + TG Y R P++ + +YH ++PIF L G
Sbjct: 249 PWGAEVVLEGEIIAGEREYEGPFGEFTGHYSGGRSMPIIKIKRVYHRNNPIFEHLYLGMP 308
Query: 277 GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVSI--TKQHEGDGKNAI 334
E ++G+ +Y +K+ P + M+ H +++I TK G A+
Sbjct: 309 WTECDYMIGINTCVPLYQQLKEAYPN----EIVAVNAMYTHGLIAIVSTKTRYGGFAKAV 364
Query: 335 ----LAAFAGHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGSSLDP- 389
L G K V+VVDEDV+ ++ +V WA++T+ P D VII + LDP
Sbjct: 365 GMRALTTPHGLGYCKMVIVVDEDVDPFNLPQVMWALSTKMHPKHDAVIIPDLSVLPLDPG 424
Query: 390 SGSDGLTAKWGIDATKPL 407
S G+T K +DAT P+
Sbjct: 425 SNPSGITHKMILDATTPV 442
>emb|CAC12324.1| (AL445066) 4-hydroxybenzoate decarboxylase related protein
[Thermoplasma acidophilum]
Length = 480
Score = 132 bits (329), Expect = 7e-30
Identities = 121/448 (27%), Positives = 205/448 (45%), Gaps = 47/448 (10%)
Query: 4 EILERFDDLVVIEKPVSKEIEITKFLLKY----KDKPILFKDVEGWEV--AGNVWSTRER 57
+ L R +DL+ + V ++E+T L + + + I F V+G EV GN++ST E+
Sbjct: 10 DFLARKNDLITVNDQVDPDLELTYILSEEERIGRGRTIQFNRVKGSEVPAVGNLFSTYEK 69
Query: 58 IAKFLSTD----NKGLLEI----------LYRAIENPKEYAVV------DKAEFLKNKES 97
+ L D + ++EI + + IE +E + +
Sbjct: 70 MKTVLGDDPYQIGRRIVEIAQPPGDSESFIGKGIEMMRELGGLRPKIAGSLPSNYDELDR 129
Query: 98 VNLLELPIPRYYPKDGGHYFTSAMVIAKKDFV---NVSFHRMMVLDEERAAIRLVPRHLY 154
V+L PI + +P+DGG + T +VI K N+ +RM V D E + H++
Sbjct: 130 VDLFRYPICKTWPQDGGKFITLPLVITKDPETGTRNMGMYRMQVYDSETTGMHW---HIH 186
Query: 155 -----SMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFG-KP 208
+ K++ +H E ++V +V+G+ + + + G+ E +S + F
Sbjct: 187 KGGSENFQKEAQKH-EVMDVAVVIGSDPLTIFSAVAPLPNGIDEFMFRGLVSKKRFDLVK 245
Query: 209 VEVVNLDGIPVPVESEFVFKAKITD-ELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDD 267
+ VNL+ P E V + I E EGPF D TG Y + + PV +++ D
Sbjct: 246 GKTVNLE---YPRNFEIVLEGYIDPAETRIEGPFGDHTGYYSLEEQFPVFHIKKIIERRD 302
Query: 268 PIFHALLPGGYEHY-MLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVSITKQH 326
I+ + G H ++MG E ++ V+P+V + E +VSI K++
Sbjct: 303 RIYPTTIVGKLWHEDVIMGKTIERMFLPLIQMVMPEVVDINTMEEAVFHNMVIVSIKKRY 362
Query: 327 EGDGKNAILAAFAGHPSL--KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARG 384
G K + + + K +VVVD+D+N+++ +EV WA+ TR PDRD++II
Sbjct: 363 PGHAKKVMFGLWGMGQMMFSKIIVVVDDDINVHNRKEVIWAMTTRIDPDRDVIIIPGTVT 422
Query: 385 SSLD-PSGSDGLTAKWGIDATKPLNKKG 411
SLD S +K GIDATK +G
Sbjct: 423 DSLDHASPIFNYGSKMGIDATKKRPDEG 450
>sp|P72861|Y936_SYNY3 HYPOTHETICAL 55.2 KDA PROTEIN SLL0936 >gi|7449634|pir||S74726
hypothetical protein sll0936 - Synechocystis sp. (strain
PCC 6803) >gi|1651951|dbj|BAA16877.1| (D90901)
hypothetical protein [Synechocystis sp.]
Length = 501
Score = 132 bits (329), Expect = 7e-30
Identities = 126/457 (27%), Positives = 210/457 (45%), Gaps = 52/457 (11%)
Query: 4 EILERFDDLVVIEKPVSKEIEITKF---LLKYKDKPILFKDVEG--WEVAGNVWSTRERI 58
++LE L I V ++E+ + +L+ +LF++V+G + VA N+ T ERI
Sbjct: 10 QLLETRGQLRRITAEVDPDLEVAEISNRMLQAGGPGLLFENVKGSPFPVAVNLMGTVERI 69
Query: 59 AKFLSTDNKGLLEILYRAI---ENPKEYAVVDKA--------EFLKNK------------ 95
++ D+ LE L + + + PK + +A + LK K
Sbjct: 70 CWAMNMDHPLELEDLGKKLALLQQPKPPKKISQAIDFGKVLFDVLKAKPGRNFFPPCQEV 129
Query: 96 ----ESVNLLELPIPRYYPKDGGHYFTSAMVIAKK---DFVNVSFHRMMVLDEERAAIRL 148
E+++L ++P+ R YP D G T +VI K NV +R+ + + +
Sbjct: 130 VIDGENLDLNQIPLIRPYPGDAGKIITLGLVITKDCETGTPNVGVYRLQLQSKTTMTVHW 189
Query: 149 VP-----RHLYSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLE 203
+ RHL + + E G++LEV I +G +++A AT + +SE A
Sbjct: 190 LSVRGGARHL----RKAAEQGKKLEVAIALGVDPLIIMAAATPIPVDLSEWLFAGLYG-- 243
Query: 204 AFGKPVEVVNLDGIPVPVESEFVFKAKITD-ELVDEGPFVDITGTYDIVRKQPVVVFEEM 262
G + + VP +SEFV + IT E++ +GPF D G Y V P+V F+ +
Sbjct: 244 GSGVALAKCKTVDLEVPADSEFVLEGTITPGEMLPDGPFGDHMGYYGGVEDSPLVRFQCL 303
Query: 263 YHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASV-KKVVPKVHGVRLTEGGCMWLHAVVS 321
H +P++ G M +IY + ++ V ++ L + A++S
Sbjct: 304 THRKNPVYLTTFSGRPPKEEAMMAIALNRIYTPILRQQVSEITDFFLPMEALSYKAAIIS 363
Query: 322 ITKQHEGDGKNAILAAFAGHPSL---KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVI 378
I K + G K A LA ++ P K V+VVD+ +NI D R+V WAI+++ P RD+ I
Sbjct: 364 IDKAYPGQAKRAALAFWSALPQFTYTKFVIVVDKSINIRDPRQVVWAISSKVDPVRDVFI 423
Query: 379 ISNARGSSLD-PSGSDGLTAKWGIDATKPLNKKGEFE 414
+ SLD S GL + GIDAT + + + E
Sbjct: 424 LPETPFDSLDFASEKIGLGGRMGIDATTKIPPETDHE 460
>gb|AAD50377.1|AF128880_1 (AF128880) 4-hydroxybenzoate decarboxylase [Clostridium
hydroxybenzoicum]
Length = 480
Score = 131 bits (327), Expect = 1e-29
Identities = 129/442 (29%), Positives = 202/442 (45%), Gaps = 46/442 (10%)
Query: 4 EILERFDDLVVIEKPVSKEIEITKF-----LLKYKDKPILFKDVEGWE--VAGNVWSTRE 56
E+LE+ L+ +++ V+ E +I L + F+ ++G++ V NV + +
Sbjct: 13 EVLEQEGQLIRVKEEVNPEPDIAAAGRAAANLGKNQPAVFFEKIKGYKYSVVTNVHGSWQ 72
Query: 57 RIAKFLSTD-NKGLLEILYRAIENPKEYAV---VDKAEFLKNKESV-----NLLE-LPIP 106
A L D N + Y ++ V V K E KE+V NL E LP+
Sbjct: 73 NHALMLGLDKNTSTKDQFYELNRRWDKFPVPPNVVKREAAPCKENVIDKDINLFEILPLY 132
Query: 107 RYYPKDGGHYFTSAMVIAKK-----DF--VNVSFHRMMVLDEERAAIRLVPRHLYSMWKD 159
R +DGG Y + A V+ DF +NV +R+ V D +R I+ + H ++ +
Sbjct: 133 RINEQDGGFYISKASVVTADPEYPDDFNKLNVGTYRIQVKDRDRVGIQALAMHDIAVQLE 192
Query: 160 SVE-HGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVVN---LD 215
E + L + I +GN + +T V Y +E E A+ G P+++V D
Sbjct: 193 KAEAENKPLPIAITIGNNPLVTFMASTPVGYNQNEYEFVGALQ---DGVPMDIVKSDLYD 249
Query: 216 GIPVPVESEFVFKAKITDEL-VDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALL 274
+ VP SE V + I + EGPF + G+Y R Q V + + H +PIF L
Sbjct: 250 HLYVPAGSEVVLEGHIIPRVRTVEGPFGEFPGSYSGARLQCEVKIDRITHRTNPIFENLY 309
Query: 275 PG--GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAV---VSITKQHEGD 329
G E LM L +Y +K+ +P+V V M+ H + +S ++ G
Sbjct: 310 LGIPWTEIDYLMALNTSVPLYKQLKETMPEVVAVN-----AMYTHGIGVIISTKVRYGGY 364
Query: 330 GKNA---ILAAFAGHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGSS 386
K +L+ G P K V+VVDE V+ ++ +V WA+ TR P +D+ II N G
Sbjct: 365 AKGVAFRLLSTPHGMPYSKIVIVVDEFVDPFNLEQVMWALTTRVHPGKDVSIIENCPGMP 424
Query: 387 LDPS-GSDGLTAKWGIDATKPL 407
LDPS G+ K IDAT P+
Sbjct: 425 LDPSTNPPGMHTKMIIDATTPV 446
>pir||D82991 conserved hypothetical protein PA5237 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951546|gb|AAG08622.1|AE004936_5 (AE004936)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 488
Score = 130 bits (323), Expect = 4e-29
Identities = 122/446 (27%), Positives = 197/446 (43%), Gaps = 52/446 (11%)
Query: 6 LERFDDLVVIEKPVSKEIEITKFL---LKYKDKPILFKDVEGWE--VAGNVWSTRERIAK 60
LE+ L I+ P+S +E+T+ L+ K +LF+ G++ V GN++ T ER+A
Sbjct: 13 LEQRGALKRIQVPISPVLEMTEVCDRTLRAKGPALLFEKPTGFDMPVLGNLFGTPERVAL 72
Query: 61 FLSTDNKGLL-EI------------------------LYRAIEN--PKEYAVVDKAEFLK 93
+ ++ G L EI +YR + + PK E ++
Sbjct: 73 GMGAEDVGALREIGKLLAQLKEPEPPKGLKDAWAKLPMYRKVLSMAPKVLKDAPCQEVVE 132
Query: 94 NKESVNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERAAIRLVP 150
E V+L LP+ +P D G T + + + K+ N+ +R V+ + +R +
Sbjct: 133 EGEDVDLGRLPVQTCWPGDVGPLITWGLTVTRGPNKERQNLGIYRQQVIGRNKVIMRWLS 192
Query: 151 RHL----YSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFG 206
Y W G+ V + +G +L T V +SE A + G
Sbjct: 193 HRGGALDYREWCQK-HPGQPYPVAVALGADPATILGAVTPVPDTLSEYAFAGLLR----G 247
Query: 207 KPVEVVNLDG--IPVPVESEFVFKAKI-TDELVDEGPFVDITGTYDIVRKQPVVVFEEMY 263
E+V G + VP +E V + I E+ DEGP+ D TG Y+ V + PV E +
Sbjct: 248 HRTELVKCRGSDLQVPASAEIVLEGVIHPGEMADEGPYGDHTGYYNEVDRFPVFTVERVT 307
Query: 264 HVDDPIFHALLPGGY-EHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVSI 322
PI+H+ G + ++G+ ++K P++ L GC + AVV++
Sbjct: 308 RRQKPIYHSTYTGRPPDEPAILGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRMAVVTM 367
Query: 323 TKQHEGDGKNAILAAFAGHPSL---KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVII 379
KQ+ G K +L ++ K V+V D+D++ D +V WAI TR P RD V+I
Sbjct: 368 KKQYPGHAKRVMLGVWSFLRQFMYTKFVIVTDDDIDARDWNDVIWAITTRMDPKRDTVMI 427
Query: 380 SNARGSSLD-PSGSDGLTAKWGIDAT 404
N LD S GL +K G+DAT
Sbjct: 428 DNTPIDYLDFASPVSGLGSKMGLDAT 453
>gb|AAG14972.1|AF242208_5 (AF242208) unknown [Escherichia coli]
Length = 475
Score = 128 bits (318), Expect = 1e-28
Identities = 105/331 (31%), Positives = 159/331 (47%), Gaps = 26/331 (7%)
Query: 96 ESVNLLE-LPIPRYYPKDGGHYFTSAMVIAKKDF-------VNVSFHRMMVLDEERAAIR 147
E +NL + LP+ R DGG Y A V+++ NV +RM V + + ++
Sbjct: 119 EEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQ 178
Query: 148 LVPRHLYSMWKDSVEH-GEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFG 206
VP H ++ E GE+L + I +GN + L GAT + Y SE E+A A+ +
Sbjct: 179 PVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPY- 237
Query: 207 KPVEVVNLDGIPVPVESEFVFKAKITDELVD-EGPFVDITGTYDIVRKQPVVVFEEMYHV 265
P+ L G VP SE + + I + EGPF + TG Y R VV +++ +
Sbjct: 238 -PIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYR 296
Query: 266 DDPIFHALLPG--GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLH---AVV 320
PIF +L G E LMG +Y +K P+V V M+ H A++
Sbjct: 297 TRPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVN-----AMYTHGLLAII 351
Query: 321 SITKQHEGDGKNAILAAFA---GHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLV 377
S K++ G + L A G +K V++VDEDV+ ++ +V WA++++ P DLV
Sbjct: 352 STKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLV 411
Query: 378 IISNARGSSLDPSGSD-GLTAKWGIDATKPL 407
+ N LDP S G+T K IDAT P+
Sbjct: 412 QLPNMSVLELDPGSSPAGITDKLIIDATTPV 442
>pir||T44997 conserved hypothetical protein yclC [imported] - Escherichia coli
>gi|4887556|emb|CAB43499.1| (AJ006210) yclC [Escherichia
coli]
Length = 475
Score = 127 bits (315), Expect = 3e-28
Identities = 104/331 (31%), Positives = 159/331 (47%), Gaps = 26/331 (7%)
Query: 96 ESVNLLE-LPIPRYYPKDGGHYFTSAMVIAKKDF-------VNVSFHRMMVLDEERAAIR 147
+ +NL + LP+ R DGG Y A V+++ NV +RM V + + ++
Sbjct: 119 DEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQ 178
Query: 148 LVPRHLYSMWKDSVEH-GEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFG 206
VP H ++ E GE+L + I +GN + L GAT + Y SE E+A A+ +
Sbjct: 179 PVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPY- 237
Query: 207 KPVEVVNLDGIPVPVESEFVFKAKITDELVD-EGPFVDITGTYDIVRKQPVVVFEEMYHV 265
P+ L G VP SE + + I + EGPF + TG Y R VV +++ +
Sbjct: 238 -PIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYR 296
Query: 266 DDPIFHALLPG--GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLH---AVV 320
PIF +L G E LMG +Y +K P+V V M+ H A++
Sbjct: 297 TRPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVN-----AMYTHGLLAII 351
Query: 321 SITKQHEGDGKNAILAAFA---GHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLV 377
S K++ G + L A G +K V++VDEDV+ ++ +V WA++++ P DLV
Sbjct: 352 STKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLV 411
Query: 378 IISNARGSSLDPSGSD-GLTAKWGIDATKPL 407
+ N LDP S G+T K IDAT P+
Sbjct: 412 QLPNMSVLELDPGSSPAGITDKLIIDATTPV 442
>gb|AAG14978.1|AF242209_3 (AF242209) unknown [Escherichia coli]
>gi|10197709|gb|AAG14989.1|AF242211_1 (AF242211) unknown
[Escherichia coli]
Length = 475
Score = 127 bits (315), Expect = 3e-28
Identities = 104/331 (31%), Positives = 159/331 (47%), Gaps = 26/331 (7%)
Query: 96 ESVNLLE-LPIPRYYPKDGGHYFTSAMVIAKKDF-------VNVSFHRMMVLDEERAAIR 147
+ +NL + LP+ R DGG Y A V+++ NV +RM V + + ++
Sbjct: 119 DEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQ 178
Query: 148 LVPRHLYSMWKDSVEH-GEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFG 206
VP H ++ E GE+L + I +GN + L GAT + Y SE E+A A+ +
Sbjct: 179 PVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPY- 237
Query: 207 KPVEVVNLDGIPVPVESEFVFKAKITDELVD-EGPFVDITGTYDIVRKQPVVVFEEMYHV 265
P+ L G VP SE + + I + EGPF + TG Y R VV +++ +
Sbjct: 238 -PIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYR 296
Query: 266 DDPIFHALLPG--GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLH---AVV 320
PIF +L G E LMG +Y +K P+V V M+ H A++
Sbjct: 297 TRPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVN-----AMYTHGLLAII 351
Query: 321 SITKQHEGDGKNAILAAFA---GHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLV 377
S K++ G + L A G +K V++VDEDV+ ++ +V WA++++ P DLV
Sbjct: 352 STKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLV 411
Query: 378 IISNARGSSLDPSGSD-GLTAKWGIDATKPL 407
+ N LDP S G+T K IDAT P+
Sbjct: 412 QLPNMSVLELDPGSSPAGITDKLIIDATTPV 442
>gb|AAG14985.1|AF242210_4 (AF242210) unknown [Escherichia coli]
Length = 475
Score = 127 bits (315), Expect = 3e-28
Identities = 104/331 (31%), Positives = 159/331 (47%), Gaps = 26/331 (7%)
Query: 96 ESVNLLE-LPIPRYYPKDGGHYFTSAMVIAKKDF-------VNVSFHRMMVLDEERAAIR 147
+ +NL + LP+ R DGG Y A V+++ NV +RM V + + ++
Sbjct: 119 DEINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQ 178
Query: 148 LVPRHLYSMWKDSVEH-GEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFG 206
VP H ++ E GE+L + I +GN + L GAT + Y SE E+A A+ +
Sbjct: 179 PVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPY- 237
Query: 207 KPVEVVNLDGIPVPVESEFVFKAKITDELVD-EGPFVDITGTYDIVRKQPVVVFEEMYHV 265
P+ L G VP SE + + I + EGPF + TG Y R VV +++ +
Sbjct: 238 -PIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYR 296
Query: 266 DDPIFHALLPG--GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLH---AVV 320
PIF +L G E LMG +Y +K P+V V M+ H A++
Sbjct: 297 TRPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVN-----AMYTHGLLAII 351
Query: 321 SITKQHEGDGKNAILAAFA---GHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLV 377
S K++ G + L A G +K V++VDEDV+ ++ +V WA++++ P DLV
Sbjct: 352 STKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLV 411
Query: 378 IISNARGSSLDPSGSD-GLTAKWGIDATKPL 407
+ N LDP S G+T K IDAT P+
Sbjct: 412 QLPNMSVLELDPGSSPAGITDKLIIDATTPV 442
>emb|CAC12688.1| (AJ272115) hypothetical protein [Thauera aromatica]
Length = 472
Score = 125 bits (311), Expect = 9e-28
Identities = 104/420 (24%), Positives = 206/420 (48%), Gaps = 39/420 (9%)
Query: 25 ITKFLLKYKDKPILFKDVEGWE--VAGNVWSTRERIAKFLSTD-NKGLLE---------I 72
++K + K +LF+ ++G++ V ++T +R+A L N L E I
Sbjct: 32 VSKLTEEKKGPALLFESIKGYDTPVFTGAFATTKRLAVMLGLPHNLSLCESAQQWMKKTI 91
Query: 73 LYRAIENPKEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFTSAMVIAKKD----F 128
+ KE E + + + V+L P+P+++P DGG Y + + + +D
Sbjct: 92 TSEGLIKAKEVKDGPVLENVLSGDKVDLNMFPVPKFFPLDGGRYIGTMVSVVLRDPETGE 151
Query: 129 VNVSFHRMMVLDEERAAIRLVP-RHLYSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSV 187
VN+ +RM +LD++R ++++P + + K + G+++ ++G + ++G T +
Sbjct: 152 VNLGTYRMQMLDDKRCGVQILPGKRGERIMKKYAKMGKKMPAAAIIGCDPLIFMSG-TLM 210
Query: 188 AYGVSELEIASAISLEAFGKPVE--VVNLDGIPVPVESEFVFKAKIT-DELVDEGPFVDI 244
G S+ +I + G+ E + L G+PVP +E V + +I + + EGPF +
Sbjct: 211 HKGASDFDITGTVR----GQQAEFLMAPLTGLPVPAGAEIVLEGEIDPNAFLPEGPFAEY 266
Query: 245 TGTY-DIVRK---QPVVVFEEMYHVDDPIFHALLPGG--YEHYMLMGLPKEPQIYASVKK 298
TG Y D + K +PV+ +++ H + PI A G + +ML+ + ++ +++
Sbjct: 267 TGYYTDELHKPIPKPVLEVQQILHRNSPILWATGQGRPVTDVHMLLAFTRTATLWTELEQ 326
Query: 299 V-VPKVHGVRLTEGGCMWLHAVVSITKQHEGDGK---NAILAAFAGHPSLKRVVVVDEDV 354
+ +P + V + +VVS+ + + G + +A++A+ G +K V+ VDED+
Sbjct: 327 MRIPGIQSVCVMPESTGRFWSVVSVKQAYPGHSRQVADAVIASNTGSYGMKGVITVDEDI 386
Query: 355 NIYDDREVEWAIATRFQPDRDLVIISNARGS----SLDPSGSDGLTAKWGIDATKPLNKK 410
D + V WA++ R+ P R +I R + +LDP+G T++ +DA P K
Sbjct: 387 QADDLQRVFWALSCRYDPARGTELIKRGRSTPLDPALDPNGDKLTTSRILMDACIPYEWK 446
>sp|O67542|YG12_AQUAE HYPOTHETICAL PROTEIN AQ_1612 >gi|7449638|pir||D70439 conserved
hypothetical protein aq_1612 - Aquifex aeolicus
>gi|2983959|gb|AAC07507.1| (AE000747) hypothetical
protein [Aquifex aeolicus]
Length = 486
Score = 123 bits (307), Expect = 3e-27
Identities = 134/457 (29%), Positives = 200/457 (43%), Gaps = 65/457 (14%)
Query: 6 LERFDDLVVIEKPVSKEIEITKFLLKYKDKP-----ILFKDVEGWE--VAGNVWSTRERI 58
LE+ +LV I++P+S +EIT+ + P +LF++ +G+ V N++ + +RI
Sbjct: 15 LEKEGELVRIKEPLSPILEITEVTDRVCKMPGGGKALLFENPKGYRIPVLTNLYGSEKRI 74
Query: 59 AKFLSTDNKGLLEI---LYRAI--ENPKEYAV-VDKAEFLKNKES--------------- 97
K L +N L +I LYR + E PK + + K LK
Sbjct: 75 KKALGYEN--LEDIGWKLYRILKPEVPKTFLEKIKKLPELKKLNDAIPKVVKRGKVQEEV 132
Query: 98 ----VNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERAAIRLVP 150
+NL +LPI + +PKDGG Y T VI K NV +R+ VLD+++ A+
Sbjct: 133 IMGDINLEDLPILKCWPKDGGRYITFGQVITKDPESGIRNVGLYRLQVLDKDKLAVH--- 189
Query: 151 RHLYSMWKDSVEH-------GEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLE 203
+ + KD H G++LEV I +G L + + V E A I
Sbjct: 190 ---WQIHKDGNHHYWKAKRLGKKLEVAIAIGGEPPLPYVASAPLPPEVDEYLFAGII--- 243
Query: 204 AFGKPVEVVNLDGIPV----PVESEFVFKAKITDE--LVDEGPFVDITGTYDIVRKQPVV 257
+PVE+V G+ V P +E + + E LVDEGPF D TG Y V K P +
Sbjct: 244 -MERPVELVK--GLTVDLEYPANAEIAIEGYVDPEEPLVDEGPFGDHTGFYTPVDKYPQM 300
Query: 258 VFEEMYHVDDPIFHALLPG-GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWL 316
+ DPI+ + G + +G E +K +P+V L GC
Sbjct: 301 HVTAIVMRKDPIYLTTIVGRPPQEDKYLGWATERIFLPLIKFNLPEVVDYHLPAEGCFHN 360
Query: 317 HAVVSITKQHEGDG-KNAILAAFAGHPSL-KRVVVVDEDVNIYDDREVEWAIATRFQPDR 374
VSI K++ G K A G SL K +VV D+ +N+ D EV WA P R
Sbjct: 361 FCFVSIKKRYPGHAFKVAYALLGLGLMSLEKHIVVFDDWINVQDIGEVLWAWGNNVDPQR 420
Query: 375 DLVIISNARGSSLDPSGSDGLTAKWGIDATKPLNKKG 411
D++I+ + G K IDAT ++G
Sbjct: 421 DVLILKGPIDVLDHATNEVGFGGKMIIDATTKWKEEG 457
>emb|CAC12691.1| (AJ272115) hypothetical protein [Thauera aromatica]
Length = 357
Score = 120 bits (297), Expect = 4e-26
Identities = 92/309 (29%), Positives = 149/309 (47%), Gaps = 11/309 (3%)
Query: 103 LPIPRYYPKDGGHYFTSAMVIAKKDFVN---VSFHRMMVLDEERAAIRLVPRHLYSMWKD 159
LPI ++ KD + T+ +V+ + HRMMV R I L +
Sbjct: 27 LPILTHHEKDAAPFITTGVVLCTDPETGRRGMGIHRMMVKGGRRLGILLANPPIPHFLAK 86
Query: 160 SVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPV 219
+ G+ L+V I +G LL+ V V + ++A+A +L G+PVE+V + + V
Sbjct: 87 AEAAGKPLDVAIALGLEPATLLSSVVKVGPRVPD-KMAAAGALR--GEPVELVRAETVDV 143
Query: 220 --PVESEFVFKAKITDELVD-EGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPG 276
P +E V + +I + + EGPF + TG Y PV+ + H D+ I+ L P
Sbjct: 144 DIPARAEIVIEGRILPGVRELEGPFGENTGHY-FSNVSPVIEISAVTHRDNFIYPGLCPW 202
Query: 277 GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILA 336
E L+ L ++ ++ ++ V + + GG VV++ + D + ++
Sbjct: 203 SPEVDALLSLAAGAELLGQLQGLIDGVVDLEMA-GGTSGFSVVVAVHRTTAADVRRLVML 261
Query: 337 AFAGHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGSSLDPSGSDGLT 396
A LK + VVD+DV+I D REV WA+ATR+QP RD V+I +DPS + T
Sbjct: 262 ALNLDRRLKTITVVDDDVDIRDPREVAWAMATRYQPARDTVVIHGCEAYVIDPSATGDGT 321
Query: 397 AKWGIDATK 405
+K G AT+
Sbjct: 322 SKVGFIATR 330
>gi|10957002 unknown [Sphingomonas aromaticivorans] >gi|11279992|pir||T31294
hypothetical protein 1272 - Sphingomonas aromaticivorans
plasmid pNL1 >gi|3378435|gb|AAD04018.1| (AF079317)
unknown [Sphingomonas aromaticivorans]
Length = 486
Score = 118 bits (294), Expect = 9e-26
Identities = 122/446 (27%), Positives = 203/446 (45%), Gaps = 50/446 (11%)
Query: 2 LREILERFDDL--------VVIEKPVSKEIEITKFLLKYKDKPILFKDVEGW---EVAGN 50
LR+ LE +D V+ +P + I + I+F ++ G+ +A
Sbjct: 16 LRDFLELLEDAGQAITWSDAVMPEPGVRNIAVAASRDANGAPAIVFDNITGYPGKRLAVG 75
Query: 51 VWSTRERIAKFL-----STDNKGLLEILYRAIENPKEYAVVDKAEF----LKNKESVNLL 101
V + + IA L +T + EI R + + + V +A+ + ++ +NL
Sbjct: 76 VHGSWDNIALLLGRPKGTTIRELFFEIAGRWGDQEAQISFVPEAQAPVHECRIEQDINLY 135
Query: 102 E-LPIPRYYPKDGGHYFTSAMVIAKKDF-------VNVSFHRMMVLDEERAAIRLVPRHL 153
+ LP+ R DGG Y A V ++ NV +R+ + + + +P H
Sbjct: 136 DVLPVYRINEYDGGFYIGKASVASRDPLDPDNFGKQNVGIYRLQIQGPDTFTLMTIPSHD 195
Query: 154 YSMWKDSVEH-GEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVV 212
+ E G L++ +++GN L AT + Y SE ASA+ G P+ +
Sbjct: 196 MGRQIMAAEREGVPLKIAVMLGNHPGLAAFAATPIGYEESEYSYASAM----MGAPIRLT 251
Query: 213 NL-DGIPVPVESEFVFKAKITD---ELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDP 268
+GI + +SE V +A++ EL EGPF + G+Y VRK P+ + H DP
Sbjct: 252 KSGNGIDILADSEIVIEAELQPGGREL--EGPFGEFPGSYSGVRKAPIFKVTAVSHRRDP 309
Query: 269 IFHALL--PGGYEHYMLMGLPKEPQIYASVKKVVPKVHGVR-LTEGGCMWLHAVVSITKQ 325
IF + G EH L+GL IYA +++ P+V V L + G L ++S+ +
Sbjct: 310 IFENIYIGRGWTEHDTLIGLHTSAPIYAQLRQSFPEVTAVNALYQHG---LTGIISVKNR 366
Query: 326 HEGDGKNAILAAFA---GHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNA 382
G K L A + G LK +++VD DV+ +D +V WA++TR + D D++++ N
Sbjct: 367 MAGFAKTVALRALSTPHGVMYLKNLIMVDADVDPFDLNQVMWALSTRTRAD-DIIVLPNM 425
Query: 383 RGSSLDPSG-SDGLTAKWGIDATKPL 407
+DPS G + IDAT L
Sbjct: 426 PAVPIDPSAVVPGKGHRLIIDATSYL 451
>sp|P26615|YIGC_ECOLI HYPOTHETICAL 55.6 KDA PROTEIN IN RFAH-RFE INTERGENIC REGION
>gi|7449636|pir||D65189 yigC protein - Escherichia coli
(strain K-12) >gi|1790277|gb|AAC76846.1| (AE000459)
putative oxidoreductase [Escherichia coli K12]
Length = 497
Score = 116 bits (289), Expect = 3e-25
Identities = 115/447 (25%), Positives = 194/447 (42%), Gaps = 52/447 (11%)
Query: 5 ILERFDDLVVIEKPVSKEIEITKFL---LKYKDKPILFKDVEGWE--VAGNVWSTRERIA 59
+LE+ +L I PV +EIT+ L+ +LF++ +G+ V N++ T +R+A
Sbjct: 15 LLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVA 74
Query: 60 KFLSTDNKGLLEILYRAI------ENPKEYA-VVDKAEFLK------------------- 93
+ ++ L + + + E PK + + DK K
Sbjct: 75 MGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKI 134
Query: 94 -NKESVNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERAAIRLV 149
+ + V+L +PI +P+D T + + + K+ N+ +R ++ + + +R +
Sbjct: 135 VSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWL 194
Query: 150 PRHL----YSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAF 205
Y W + GE V + +G +L T V +SE A +
Sbjct: 195 SHRGGALDYQEWC-AAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLR---- 249
Query: 206 GKPVEVVNL--DGIPVPVESEFVFKAKITD-ELVDEGPFVDITGTYDIVRKQPVVVFEEM 262
G EVV + + VP +E V + I E EGP+ D TG Y+ V PV +
Sbjct: 250 GTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHI 309
Query: 263 YHVDDPIFHALLPGGY-EHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVS 321
+D I+H+ G + ++G+ ++K P++ L GC + AVV+
Sbjct: 310 TQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVT 369
Query: 322 ITKQHEGDGKNAILAAFAGHPSL---KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVI 378
I KQ+ G K ++ ++ K V+V D+DVN D +V WAI TR P RD V+
Sbjct: 370 IKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVL 429
Query: 379 ISNARGSSLD-PSGSDGLTAKWGIDAT 404
+ N LD S GL +K G+DAT
Sbjct: 430 VENTPIDYLDFASPVSGLGSKMGLDAT 456
>pir||H81051 conserved hypothetical protein NMB1694 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226949|gb|AAF42042.1| (AE002520) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 494
Score = 116 bits (288), Expect = 5e-25
Identities = 115/452 (25%), Positives = 198/452 (43%), Gaps = 57/452 (12%)
Query: 5 ILERFDDLVVIEKPVSKEIEITKF---LLKYKDKPILFKDV-------EGWEVAGNVWST 54
+LE+ L + P+S +E+T+ +L+ + +LF++ G+ V N++ T
Sbjct: 14 MLEQQGKLKRVAHPISPYLEMTEIADRVLRAEGPALLFENPIKPDGTRYGYPVLANLFGT 73
Query: 55 RERIAKFLSTDNKGLLEILYRAIENPKEYA------------------------VVDKA- 89
ER+A + D+ L + + + KE VV A
Sbjct: 74 PERVAMGMGADSVSKLREIGQTLAYLKEPEPPKGIKDAFSKLPLLKDIWSMAPNVVKNAP 133
Query: 90 --EFLKNKESVNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERA 144
E + E V+L +LPI +P+D T + + + K N+ +R ++ + +
Sbjct: 134 CQEIVWEGEDVDLYQLPIQHCWPEDVAPLVTWGLTVTRGPHKKRQNLGIYRQQLIGKNKL 193
Query: 145 AIRLVPRHL----YSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAI 200
+R + Y ++ + V +V+G +L T V +SE + A +
Sbjct: 194 IMRWLSHRGGALDYQEFR-KLNPDTPYPVAVVLGCDPATILGAVTPVPDTLSEYQFAGLL 252
Query: 201 SLEAFGKPVEVVNLDG--IPVPVESEFVFKAKI-TDELVDEGPFVDITGTYDIVRKQPVV 257
G E+V G + VP +E V + I +E EGP+ D TG Y+ PV
Sbjct: 253 R----GSRTELVKCIGNDLQVPARAEIVLEGVIHPNETALEGPYGDHTGYYNEQDYFPVF 308
Query: 258 VFEEMYHVDDPIFHALLPGGY-EHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWL 316
E + ++PI+H+ G + ++G+ ++K P++ L GC +
Sbjct: 309 TVERITMRENPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEITDFYLPPEGCSYR 368
Query: 317 HAVVSITKQHEGDGKNAILAAFAGHPSL---KRVVVVDEDVNIYDDREVEWAIATRFQPD 373
AVVS+ KQ+ G K ++ ++ K ++VVD+DVN+ D +EV WA+ TR P
Sbjct: 369 MAVVSMKKQYAGHAKRVMMGCWSFLRQFMYTKFIIVVDDDVNVRDWKEVIWAVTTRMDPV 428
Query: 374 RDLVIISNARGSSLD-PSGSDGLTAKWGIDAT 404
RD V++ N LD S GL K G+DAT
Sbjct: 429 RDTVLVENTPIDYLDFASPVSGLGGKMGLDAT 460
>gb|AAF33412.1| (AF233324) 92% identity to E. coli hyopthetical protein (YIGC)
(SW:P26615) [Salmonella typhimurium LT2]
Length = 492
Score = 116 bits (288), Expect = 5e-25
Identities = 113/447 (25%), Positives = 194/447 (43%), Gaps = 52/447 (11%)
Query: 5 ILERFDDLVVIEKPVSKEIEITKFL---LKYKDKPILFKDVEGWE--VAGNVWSTRERIA 59
+LE+ +L I PV +EIT+ L+ +LF++ +G+ V N++ T +R+A
Sbjct: 15 LLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYAMPVLCNLFGTPKRVA 74
Query: 60 KFLSTDNKGLLEILYRAI------ENPKEYA-VVDKAEFLK------------------- 93
+ D+ L + + + E PK + + DK K
Sbjct: 75 MGMGQDDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKI 134
Query: 94 -NKESVNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERAAIRLV 149
+ + V+L LP+ +P D T + + + K+ N+ +R ++ + + +R +
Sbjct: 135 ASGDDVDLTRLPVMTCWPDDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWL 194
Query: 150 PRHL----YSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAF 205
+ W + GE V + +G +L T V +SE A +
Sbjct: 195 SHRGGALDFQEWL-AARPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLR---- 249
Query: 206 GKPVEVVNL--DGIPVPVESEFVFKAKITD-ELVDEGPFVDITGTYDIVRKQPVVVFEEM 262
G EVV + + VP +E + + I E+ EGP+ D TG Y+ V PV +
Sbjct: 250 GTKTEVVKCLSNDLEVPASAEIILEGYIEPGEMAPEGPYGDHTGYYNEVDSFPVFTVTHI 309
Query: 263 YHVDDPIFHALLPGGY-EHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVS 321
+D I+H+ G + ++G+ ++K P++ L GC + AVV+
Sbjct: 310 TQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVT 369
Query: 322 ITKQHEGDGKNAILAAFAGHPSL---KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVI 378
+ KQ+ G K ++ ++ K V+V D+DVN D +V WAI TR P RD V+
Sbjct: 370 MKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVL 429
Query: 379 ISNARGSSLD-PSGSDGLTAKWGIDAT 404
+ N LD S GL +K G+DAT
Sbjct: 430 VENTPIDYLDFASPVSGLGSKMGLDAT 456
>sp|Q9X697|VDCC_STRD7 VDCC PROTEIN >gi|4741969|gb|AAD28782.1|AF134589_2 (AF134589) VdcC
[Streptomyces sp. D7]
Length = 474
Score = 111 bits (276), Expect = 1e-23
Identities = 97/329 (29%), Positives = 155/329 (46%), Gaps = 23/329 (6%)
Query: 96 ESVNLLE-LPIPRYYPKDGGHYFTSAMVIAKK-----DF--VNVSFHRMMVLDEERAAIR 147
E V+L LP+ R DGG Y A V+++ DF NV +R+ V+ R A
Sbjct: 119 EDVDLFSVLPLFRLNDGDGGFYLDKAAVVSRDPEDRDDFGKQNVGTYRIQVIGTNRLAFH 178
Query: 148 LVPRHLYSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGK 207
+ + + E GE+L + I +GN + + +AY SE E+A A L
Sbjct: 179 PAMHDVAQHLRKAEEKGEDLPIAITLGNDPVMAIVAGMPMAYDQSEYEMAGA--LRGAPA 236
Query: 208 PVEVVNLDGIPVPVESEFVFKAKI-TDELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVD 266
P+ L G VP SE V + I + + EGPF + TG Y R+ PV+ E + +
Sbjct: 237 PIATAPLTGFDVPWGSEVVIEGVIESRKRRIEGPFGEFTGHYSGGRRMPVIRVERVSYRH 296
Query: 267 DPIFHALLPG--GYEHYMLMGLPKEPQIYASVKKVVPKVHGVR--LTEGGCMWLHAVVSI 322
+P+F +L G E L+G + ++ P+V V T G L ++S
Sbjct: 297 EPVFESLYLGMPWNECDYLVGPNTCVPLLKQLRAEFPEVQAVNAMYTHG----LMVIIST 352
Query: 323 TKQHEGDGKNAILAAFA---GHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVII 379
K++ G K + A G + +V++VDEDV+ ++ +V WA++ + P D+V+I
Sbjct: 353 AKRYGGFAKAVGMRAMTTPHGLGYVAQVILVDEDVDPFNLPQVMWAMSAKVNPKDDVVVI 412
Query: 380 SNARGSSLDPSGSD-GLTAKWGIDATKPL 407
N L P+ G+++K IDAT P+
Sbjct: 413 PNLSVLELAPAAQPAGISSKMIIDATTPV 441
>pir||F81823 conserved hypothetical protein NMA1952 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380584|emb|CAB85172.1| (AL162757) conserved
hypothetical protein [Neisseria meningitidis Z2491]
Length = 492
Score = 110 bits (273), Expect = 3e-23
Identities = 115/452 (25%), Positives = 195/452 (42%), Gaps = 57/452 (12%)
Query: 5 ILERFDDLVVIEKPVSKEIEITKF---LLKYKDKPILFKDVE-------GWEVAGNVWST 54
+LE+ L I PVS +E+T+ +L+ + +LF+ + V N++ T
Sbjct: 12 MLEQQGKLKRIAHPVSPHLEMTEIADRVLRAEGPALLFEHPVKPDGTRYDYPVLANLFGT 71
Query: 55 RERIAKFLSTDNKGLLEILYRAIENPKEYA------------------------VVDKA- 89
ER+A + D+ L + + + KE VV A
Sbjct: 72 PERVAMGMGADSVSKLREIGQTLAYLKEPEPPKGIKDAFSKLPLLKDIWSMAPNVVKNAP 131
Query: 90 --EFLKNKESVNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERA 144
E + E V+L +LPI +P+D T + + + K N+ +R ++ +
Sbjct: 132 CQEIVWEGEDVDLYQLPIQHCWPEDVAPLVTWGLTVTRGPHKKRQNLGIYRQQLIGINKL 191
Query: 145 AIRLVPRHL----YSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAI 200
+R + Y ++ + V +V+G +L T V +SE + A +
Sbjct: 192 IMRWLSHRGGALDYQEFR-KLNPDTPYPVAVVLGCDPATILGAVTPVPDTLSEYQFAGLL 250
Query: 201 SLEAFGKPVEVVNLDG--IPVPVESEFVFKAKI-TDELVDEGPFVDITGTYDIVRKQPVV 257
G E+V G + VP +E V + I +E EGP+ D TG Y+ PV
Sbjct: 251 R----GSRTELVKCIGNDLQVPARAEIVLEGVIHPNETALEGPYGDHTGYYNEQDHFPVF 306
Query: 258 VFEEMYHVDDPIFHALLPGGY-EHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWL 316
E + ++PI+H+ G + ++G+ ++K P++ L GC +
Sbjct: 307 TVERITMRENPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEITDFYLPPEGCSYR 366
Query: 317 HAVVSITKQHEGDGKNAILAAFAGHPSL---KRVVVVDEDVNIYDDREVEWAIATRFQPD 373
AVVS+ KQ+ G K ++ ++ K ++VVD+DV++ D +EV WA+ TR P
Sbjct: 367 MAVVSMKKQYAGHAKRVMMGCWSFLRQFMYTKFIIVVDDDVDVRDWKEVIWAVTTRMDPV 426
Query: 374 RDLVIISNARGSSLD-PSGSDGLTAKWGIDAT 404
RD V++ N LD S GL K G+DAT
Sbjct: 427 RDTVLMENTPIDYLDFASPVSGLGGKMGLDAT 458
>sp|Q9ZCD6|Y821_RICPR HYPOTHETICAL PROTEIN RP821 >gi|7449635|pir||F71643 hypothetical
protein RP821 - Rickettsia prowazekii
>gi|3861347|emb|CAA15246.1| (AJ235273) unknown
[Rickettsia prowazekii]
Length = 492
Score = 107 bits (265), Expect = 2e-22
Identities = 103/353 (29%), Positives = 156/353 (44%), Gaps = 44/353 (12%)
Query: 79 NPKEYAVVDKAEFLKNKESVNLLELPIPRYYPKDGGHYFTSAMVIAKK------DFVNVS 132
+PK A E + K ++N+L PI + +P+D T +V+ K D N+
Sbjct: 123 SPKTIAKGACHEVVIVKPNINIL--PIQKCWPEDISPLITWGIVVTKGPTKDRVDHYNLG 180
Query: 133 FHRMMVLDEERAAIRLVP----RHLYSMWKDSVEHGEELEVRIVVG-NPVHLLLAGATSV 187
+RM V+ E + +R + + WK + E +V+G NPV + LA T +
Sbjct: 181 IYRMQVVSENKLLMRWLKLRGGAEHHKRWKTKKK--ELFPAAVVIGANPV-ITLAAVTPI 237
Query: 188 AYGVSELEIASAISLEAFGKPVEVVNLDGIP--VPVESEFVFKAKIT-DELVDEGPFVDI 244
VSE A + K +E+V I VP SE V + ++ E + EGPF D
Sbjct: 238 PENVSEYNFAGLLG----NKKIELVQCKTIDLKVPAHSEIVLEGYVSLAEYLPEGPFGDH 293
Query: 245 TGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGGYEHYMLMGLPKEPQIYASVKKVV---- 300
TG Y+ V + P+ + PI+ + G P EP I +
Sbjct: 294 TGYYNDVEEFPIFTVTAITMKKKPIYLSTYTGKP--------PDEPAILGEALNEIFIPI 345
Query: 301 -----PKVHGVRLTEGGCMWLHAVVSITKQHEGDGKNAILAAFAGHPSL---KRVVVVDE 352
P++ GC + VVSI K + G K +L ++ K ++VVD+
Sbjct: 346 LHQQFPEIVDFWFPPEGCSYRVVVVSIKKSYPGHAKRIMLGIWSYLRQFMYNKFIIVVDD 405
Query: 353 DVNIYDDREVEWAIATRFQPDRDLVIISNARGSSLD-PSGSDGLTAKWGIDAT 404
D+++ + +EV WAIATR P RD I N+ LD S GL +K GIDAT
Sbjct: 406 DIDVRNWQEVIWAIATRSDPKRDTSFIDNSPIDYLDFASPKSGLGSKMGIDAT 458
>emb|CAC11330.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 536
Score = 106 bits (261), Expect = 7e-22
Identities = 113/443 (25%), Positives = 194/443 (43%), Gaps = 36/443 (8%)
Query: 1 MLREIL---ERFDDLVVIEKPVSKEIEITKF--LLKYKDKPILFKDVE---GWEVAGNVW 52
+LRE + E ++V + + +S EI+ +++ K + F ++ G+ + ++
Sbjct: 9 VLREFVSDEETAGNVVDVNEDLSPNFEISTLASMMEKTGKIMRFNSIKNFPGFSIITGLF 68
Query: 53 STRERIAKFLSTDNKGLLEILYRAIENPKEYAVVD-KAEF---LKNKESVNLLELPIPRY 108
T ER+ K L + N+ + I + K L ++ NLL LP+ R+
Sbjct: 69 LTEERMMKILGSANEADFYRKWARITGEGSLPDIQIKGSLPADLYPEDKPNLLSLPVLRH 128
Query: 109 YPKDG-----GHYFTSAMVIAKK----DFVNVSFHRMMVLDEERAAIRLVPR-HLYSMWK 158
Y DG G Y T +V A+ + +N+SF R+ ++ E+R A HL+S +
Sbjct: 129 YKNDGKKTGNGRYITGGIVAARDPNDPERINLSFTRIQIISEDRYAFDAGSHGHLWSYLQ 188
Query: 159 DSVEHGEELEVRIVVGNP-VHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGI 217
S + G LE+ +++G P +H L T+ A+ E I + K + +
Sbjct: 189 QSRKSGSSLEMSVIIGAPPIHYL----TAAAFMDDEYRKIGRIFSFDYVKGFR----NDV 240
Query: 218 PVPVESEFVFKAK-ITDELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLP- 275
PVP SE V +A+ I +E DEGPF + TG + V + +PI+ ++P
Sbjct: 241 PVPSASEIVIEARYIPNEEYDEGPFAEYTGYMGYDSTRSVAEVRSLIMRRNPIYVDIMPS 300
Query: 276 GGYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLT--EGGCMWLHAVVSITKQHEGDGKNA 333
YEH L + + +++ PK H +R+ G +L A+ + G KN
Sbjct: 301 NSYEHVNLFSFTRSVGVNRIIRETSPKGHDIRIVWPNYGSRFL-ALGYVDPPFPGLAKNT 359
Query: 334 ILAAFAGHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGSSLDPSGSD 393
L+A A P +VV+V+E + +A +R L II + S DP+ D
Sbjct: 360 ALSAIANDPLWNKVVMVNEGKTDLTLERMLLNLAETKNFNRSLTIIRDLYTISSDPTARD 419
Query: 394 GLTAKWGIDATKPLNKKGEFERV 416
T I T+ + ER+
Sbjct: 420 DGTDSKLIAITRGSGNHFDVERL 442
>gb|AAF00115.1|AF141971_2 (AF141971) oxidoreductase homolog [Haemophilus ducreyi]
Length = 487
Score = 102 bits (252), Expect = 8e-21
Identities = 110/451 (24%), Positives = 195/451 (42%), Gaps = 52/451 (11%)
Query: 5 ILERFDDLVVIEKPVSKEIEITKFL---LKYKDKPILFKDVEGWE--VAGNVWSTRERIA 59
+LE+ +LV +++ + +E+ + L+ ILF++ +G++ V N++ T +R+A
Sbjct: 12 LLEQQGELVRVKQEIDPYLEMAEIADRTLRKAGPAILFENPKGYQMPVLCNLFGTPKRVA 71
Query: 60 KFLSTDNKGLLEILYRAI------ENPKEYAVV------------------DKA---EFL 92
+ +N L L + + E PK + + D A + +
Sbjct: 72 LGMGQENTQALRELGKLLAFLKEPEPPKGFKELLGQLPQWKQILNMPSKTRDNAACQQIV 131
Query: 93 KNKESVNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERAAIRLV 149
++VNL +LPI + +D T + I + K N+ +R ++ + + +R +
Sbjct: 132 IEGDAVNLYDLPIMHCHEEDIAPLITWGLTITQGPHKKRQNLGIYRQQLIAKNKLIMRWL 191
Query: 150 PRHL----YSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAF 205
+ WK + + V + +G +LA T + + E A +
Sbjct: 192 SHRGGALDFQEWKATYPD-KPFPVSVAIGADPATILAAVTPIPDTLPEYAFAGLLR---- 246
Query: 206 GKPVEVVNL--DGIPVPVESEFVFKAKI-TDELVDEGPFVDITGTYDIVRKQPVVVFEEM 262
G EV+ + + VP +E V + I +E EGP+ D TG Y+ PV +
Sbjct: 247 GHKTEVIKSISNQLDVPASAEIVLEGYIDVNETALEGPYGDHTGYYNEQEYFPVFTVTHI 306
Query: 263 YHVDDPIFHALLPGGY-EHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVS 321
D I+H+ G + ++G ++K P++ L GC + AVV+
Sbjct: 307 TMRKDAIYHSTYTGRPPDEPAVLGEALNEVFIPILQKQFPEIVDFYLPPEGCSYRLAVVT 366
Query: 322 ITKQHEGDGKNAILAAFAGHPSL---KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVI 378
I KQ+ G K ++ ++ K V+V D+D+N + ++V WAI TR P RD +
Sbjct: 367 IKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDINARNWKDVIWAITTRCDPSRDTTL 426
Query: 379 ISNARGSSLD-PSGSDGLTAKWGIDATKPLN 408
I N LD S GL +K GIDAT N
Sbjct: 427 IENTPIDYLDFASPIAGLGSKMGIDATNKWN 457
>pir||G82338 conserved hypothetical protein VC0309 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654722|gb|AAF93483.1|
(AE004119) conserved hypothetical protein [Vibrio
cholerae]
Length = 613
Score = 96.0 bits (235), Expect = 7e-19
Identities = 108/448 (24%), Positives = 188/448 (41%), Gaps = 52/448 (11%)
Query: 4 EILERFDDLVVIEKPVSKEIEITKF---LLKYKDKPILFKDVEGWE--VAGNVWSTRERI 58
+ LE+ +L I P+ E+T+ L+ K +LF++ G++ V N++ T ER+
Sbjct: 11 DYLEQRGELKRITHPIDPHYEMTEISDRTLRAKGPALLFENPLGYDFPVLTNLFGTPERV 70
Query: 59 AKFLSTDN--------------------KGLLEIL-----YRAIENP--KEYAVVDKAEF 91
A + +GL E++ ++ + N K E
Sbjct: 71 AMGMGRQQVQELRDVGQWLAYLKEPEPPRGLKELIEKLPVFKQVLNMPVKRLRRAPCQEI 130
Query: 92 LKNKESVNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERAAIRL 148
+ ++V+L ++P+ +P D T + I + K N+ +R + + +R
Sbjct: 131 VWQGDAVDLDKIPVMSCWPDDVAPLLTWGLTITRGPHKKRQNLGIYRQQKIARNKVIMRW 190
Query: 149 VPRHLYSM----WKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEA 204
+ ++ W + GE V + G +L T V +SE A +
Sbjct: 191 LAHRGGALDLRDWMEK-HPGEPFPVSVAFGADPATILGAVTPVPDTLSEYAFAGLLR--- 246
Query: 205 FGKPVEVVNL--DGIPVPVESEFVFKAKIT-DELVDEGPFVDITGTYDIVRKQPVVVFEE 261
G EVV + + VP +E V + I +E DEGP+ D TG Y+ V + V
Sbjct: 247 -GSRTEVVKSISNDLEVPASAEIVLEGYIDPNEFADEGPYGDHTGYYNEVERHHVFTVTH 305
Query: 262 MYHVDDPIFHALLPG-GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVV 320
+ + PI+H+ G + ++G+ ++K P++ L GC + A+V
Sbjct: 306 VTMRNKPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIADFYLPPEGCSYRMAIV 365
Query: 321 SITKQHEGDGKNAILAAFA---GHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLV 377
++ KQ+ G K +L ++ K V+V DE VN D +V A+ P RD +
Sbjct: 366 TLKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVCDEQVNARDWPQVIAAMVNHMSPLRDTL 425
Query: 378 IISNARGSSLD-PSGSDGLTAKWGIDAT 404
I + SLD S GL +K G+DAT
Sbjct: 426 FIEHTPIDSLDFASPVVGLGSKIGLDAT 453
>pir||A75533 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458005|gb|AAF09911.1|AE001893_4 (AE001893)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 645
Score = 94.4 bits (231), Expect = 2e-18
Identities = 110/449 (24%), Positives = 190/449 (41%), Gaps = 60/449 (13%)
Query: 5 ILERFDDLVVIEKPVSKEIEITKF---LLKYKDKPILFKDVEG--WEVAGNVWSTRERIA 59
+LE +L+ + +PVS+++EIT+ L+K +LF++V G + V + TRER+A
Sbjct: 39 VLEERGELLRVREPVSRDLEITEISDRLVKKGGPAVLFENVVGSDYPVVMGLMGTRERMA 98
Query: 60 KFLSTDNKGLLEILYRAIEN------------------------PKEYAVVDKAEFLKNK 95
+ ++ L RA+ + P+ E +
Sbjct: 99 LAVGVNDLDELAQKIRALIDLGGGGSRFGLLSNLPKLRDAMNLPPRRVKTAPVQEVVWRG 158
Query: 96 ESVNLLELPIPRYYPKDGGHYFTSAMVIAKKDFV---NVSFHRMMVLDEERAAI-----R 147
+ V+L ++P+ + +P+DGG + T +VI K N+ +RM V+ + + +
Sbjct: 159 DEVDLSKIPVLKCWPEDGGPFVTFPLVITKDPETGERNMGMYRMQVMSKNTTGMHWQRHK 218
Query: 148 LVPRHLYSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSV--AYGVSELEIASAISLEAF 205
RHL + + + G+ LEV + +G L+ A + G++E +A + + +
Sbjct: 219 TGTRHL----EKARQRGQRLEVAVAIGGDPALIYAATAPIPPVPGLNEFAVAGYLRGQRY 274
Query: 206 GKPVEVVNLDGIPVPVESEFVFKAKI--TDELVDEGPFVDITGTYDIVRKQPVVVFEEMY 263
PV + VP +EFV + + ++ V EGPF D TG Y + P+ +
Sbjct: 275 --PVVKGLTVDLEVPANAEFVLEGYVDPQEDWVVEGPFGDHTGFYTLADLYPLFHVTCVT 332
Query: 264 HVDDPIFHALL---PGGYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVV 320
+P++ A + P + Y++ E + + +VP++ + G VV
Sbjct: 333 MRQNPVYPATIVGRPPMEDAYLIEA--SERLFLPAAQLIVPEIVDYHMPPAGVAHNLVVV 390
Query: 321 SITKQHEGDGKNAI--LAAFAGHPSLKRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVI 378
SI K G L K +VVVD DV + D V +A + P RD +
Sbjct: 391 SIKKDFPGQAYKVANGLLGLGQMMFAKVIVVVDADVKVNDMDAVWREVAAKAVPGRDTL- 449
Query: 379 ISNARG--SSLDPSGSD-GLTAKWGIDAT 404
RG LD S G K IDAT
Sbjct: 450 --TGRGPIDVLDHSSRGWGYGGKLIIDAT 476
>sp|O34023|Y66K_CHLPS HYPOTHETICAL 66.2 KDA PROTEIN (ORFF) >gi|2444076|gb|AAB71513.1|
(U88070) hypothetical protein [Chlamydophila caviae]
Length = 581
Score = 93.6 bits (229), Expect = 4e-18
Identities = 100/426 (23%), Positives = 187/426 (43%), Gaps = 42/426 (9%)
Query: 2 LREILERFDDLVVIEKPVSKEIEITKF---LLKYKDKPILFKDVEG--WEVAGNVWSTRE 56
L +L +DL+ I PV +E+ + +++ + +LF +V+G + V N++ T++
Sbjct: 9 LVSLLRSQNDLIDIFAPVDPYLELPEIHRRVIENQGPALLFHNVQGASFPVLTNLFGTQK 68
Query: 57 RIAKFLSTDNKGLLEILYRAIENPKEYAVV---------------DKAEFLK----NKES 97
R+ + S KGL+ + + +P + + + KA FLK S
Sbjct: 69 RVDQIFSKVPKGLIPQVIHLLSSPPKLSQLWKHRNLLLRGLSLGLRKARFLKFPHKKMAS 128
Query: 98 VNLLELPIPRYYPKDGGHYFTSAMVIAKKD---FVNVSFHRMMVLDEERAAIRLVPRHLY 154
V+L +LP+ +P+DGG + T +V + N+ +RM D + + +
Sbjct: 129 VDLHQLPMLTSWPEDGGAFLTLPLVYTESPSSKIPNLGMYRMQRFDRDTLGLHFQIQKGG 188
Query: 155 SM-WKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVVN 213
M + ++ + E L V + + L+L+ + +SEL + + + G + N
Sbjct: 189 GMHFYEAEQKNENLPVTVFLSGNPFLILSAIAPLPENISELLLCTFLQ----GSKLHYKN 244
Query: 214 LDGIPVPV--ESEFVFKAK-ITDELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIF 270
P P+ +SEF+ + I +E EGPF D G Y + P ++YH D I+
Sbjct: 245 DPDTPHPLLYDSEFILIGEGICNERRPEGPFGDHFGYYSLQHDFPAFKCRKIYHRKDAIY 304
Query: 271 HALLPG-GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVV-SITKQHEG 328
A + G Y+ +G + + V+P V +L G HA+ ++ K+
Sbjct: 305 PATIVGKPYQEDFYLGNKLQEYLSPLFPMVMPGVR--QLKSYGEAGFHALTGAVVKERYW 362
Query: 329 DGKNAILAAFAGHPSL---KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGS 385
A G L K +++ D V++ + ++ I +R P+RDL+I S
Sbjct: 363 KESLATSLRILGEGQLSLTKFLMITDHHVDLDNFPKLLETILSRIVPERDLIIFSETSND 422
Query: 386 SLDPSG 391
+LD +G
Sbjct: 423 TLDYTG 428
>emb|CAB92111.1| (AL356334) conserved hypothetical protein SCD69.10 [Streptomyces
coelicolor A3(2)]
Length = 485
Score = 90.5 bits (221), Expect = 3e-17
Identities = 118/458 (25%), Positives = 185/458 (39%), Gaps = 59/458 (12%)
Query: 2 LREILERFDDLVVIEKPVSKEIEITKFL---LKYKDKPILFKDVEGWEV--AGNVWSTRE 56
L LER DL I+ V +E+ + + K +LF++V+G ++ A NV+ T
Sbjct: 9 LLRTLEREGDLKRIKAEVDPYLEVGEIVDRVNKAGGPALLFENVKGSDLPLAMNVFGTDR 68
Query: 57 RIAKFLS----TDNKGLLEILYRAIENPKEYAVVDKA----------------------- 89
R+ K L +D + L R E P+ + V +A
Sbjct: 69 RLLKALGLKSYSDISDKIGGLLRP-ELPQGFVGVREAFGKLGTMTHVPPKKVKPGSAPVQ 127
Query: 90 EFLKNKESVNLLELPIPRYYPKDGGHYFTSAMVIAKKDFV---NVSFHRMMVLDEERAAI 146
E + + V+L LP +P DGG +F + K N+ +R+ D
Sbjct: 128 ETVLTGDDVDLERLPALFTWPDDGGSFFNLGLTHTKDPETGIRNLGLYRLQRHDR----- 182
Query: 147 RLVPRHLYSMWKDSVEH-------GEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASA 199
R + H + + KDS H GE L V I G P + A + + E A
Sbjct: 183 RTIGMH-WQIHKDSRNHYQVAARRGERLPVAIAFGCPPAVTYASTAPLPGDIDEYLFAGF 241
Query: 200 ISLEAFGKPVEVVNLDGIP--VPVESEFVFKAKITD-ELVDEGPFVDITGTYDIVRKQPV 256
+ GK VE+V+ +P VP +E V + + E++ EGPF D TG Y P
Sbjct: 242 LQ----GKRVEMVDCKTVPLQVPAHAEVVLEGWLEPGEMLPEGPFGDHTGFYTPQEPFPA 297
Query: 257 VVFEEMYHVDDPIFHALLPGGYE-HYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMW 315
+ + + P+ +++ G +G E +K +VP + L E G
Sbjct: 298 LKIDCVTMRKRPLLQSIVVGRPPTEDGPLGRATERFFLPLLKIIVPDIVDYHLPEAGGFH 357
Query: 316 LHAVVSITKQHEGDGKNAILAAFAGHPS--LKRVVVVDEDVNIYDDREVEWAIATRFQPD 373
A+VSI K++ + + A + H K +VVVD D +++D EV W
Sbjct: 358 NCAIVSIDKKYPKHAQKVMHAIWGAHMMSLTKLIVVVDSDCDVHDLHEVAWRALGNTDYG 417
Query: 374 RDLVIISNARGSSLDPSGSDGLTAKWGIDATKPLNKKG 411
RDL ++ S K GIDATK L ++G
Sbjct: 418 RDLTVVEGPVDHLDHASYQQFWGGKAGIDATKKLPEEG 455
>sp|O84087|Y085_CHLTR HYPOTHETICAL PROTEIN CT085 >gi|7468628|pir||E71557 hypothetical
protein CT085 - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3328481|gb|AAC67676.1| (AE001283)
hypothetical protein [Chlamydia trachomatis]
Length = 579
Score = 83.1 bits (202), Expect = 5e-15
Identities = 91/424 (21%), Positives = 180/424 (41%), Gaps = 34/424 (8%)
Query: 2 LREILERFDDLVVIEKPVSKEIEITKF---LLKYKDKPILFKDVEG--WEVAGNVWSTRE 56
L + L +L+ I PV +EI + +++ + +LF V+G + V N++ TR
Sbjct: 7 LVDYLRSQHELIDIHVPVDPHLEIAEIHRRVVEREGPALLFHQVKGSPFPVLTNLFGTRR 66
Query: 57 RIAKFLSTDNKGLLEILYRAIENPKEYAVVDKAEFLKNK--------------------E 96
R+ + L E + + +P ++ + K L + +
Sbjct: 67 RVDLLFPDLSSDLFEQIIHLLSSPPSFSSLWKHRSLFKRGISALGMRKRHLRPSPFLYQD 126
Query: 97 SVNLLELPIPRYYPKDGGHYFTSAMVIAKKD---FVNVSFHRMMVLDEERAAIRL-VPRH 152
+ NL +LP+ +P+DGG + T +V + N+ +RM D+E + + +
Sbjct: 127 APNLSQLPMLTSWPEDGGPFLTLPLVYTQSPENGVPNLGMYRMQRFDKETLGLHFQIQKG 186
Query: 153 LYSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVV 212
+ + ++ + + L V + + L+L+ + V EL S + + VE
Sbjct: 187 GGAHFFEAEQKKQNLPVTVFLSGNPFLILSAIAPLPENVPELLFCSFLQNKKLSF-VEKH 245
Query: 213 NLDGIPVPVESEFVFKAK-ITDELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFH 271
G P+ +SEF+ + + E EGPF D G Y + P+ +YH D I+
Sbjct: 246 PQSGHPLLCDSEFILTGEAVAGERRPEGPFGDHFGYYSLTHDFPIFKCNCLYHKKDAIYP 305
Query: 272 ALLPG-GYEHYMLMGLPKEPQIYASVKKVVPKVHGVR-LTEGGCMWLHAVVSITKQHEGD 329
A + G ++ +G + + ++P V ++ E G L A + + +
Sbjct: 306 ATVVGKPFQEDFFLGNKLQELLSPLFPLIMPGVQDLKSYGEAGFHALAAAIVKERYWKEA 365
Query: 330 GKNAILAAFAGHPSLKRVV-VVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGSSLD 388
++A+ G SL + + + D+ V++ + + + R DRDL+I+S +LD
Sbjct: 366 LRSALRILGEGQLSLTKFLWITDQSVDLENFPSLLECVLERMNFDRDLLILSETANDTLD 425
Query: 389 PSGS 392
+GS
Sbjct: 426 YTGS 429
>pir||F81711 conserved hypothetical protein TC0359 [imported] - Chlamydia
muridarum (strain Nigg) >gi|7190401|gb|AAF39220.1|
(AE002303) conserved hypothetical protein [Chlamydia
muridarum]
Length = 579
Score = 78.8 bits (191), Expect = 1e-13
Identities = 85/414 (20%), Positives = 183/414 (43%), Gaps = 34/414 (8%)
Query: 11 DLVVIEKPVSKEIEITKF---LLKYKDKPILFKDVEG--WEVAGNVWSTRERIAKFLSTD 65
+L+ I PV +EI + +++ + +LF V+G + V N++ T++R+
Sbjct: 16 ELIDIYTPVDPYLEIAEIHRRVVENEGPALLFHHVKGSPFPVLTNLFGTQKRVDLLFPDL 75
Query: 66 NKGLLEILYRAIENPKEYAVV-DKAEFLK-------------------NKESVNLLELPI 105
+ G+ + + + +P ++ + LK ++++ NLL+LP+
Sbjct: 76 SSGIFDQIAILLSSPPSFSSLWQHRSLLKRGLSSLGLRKQRFRPSPFLHQDAPNLLQLPM 135
Query: 106 PRYYPKDGGHYFTSAMVIAKKD---FVNVSFHRMMVLDEERAAIRL-VPRHLYSMWKDSV 161
+P+DGG + T +V + N+ +RM DE+ + + + + + ++
Sbjct: 136 LTSWPEDGGPFLTLPLVYTQSPENGIPNLGMYRMQRFDEQTLGLHFQIQKGGGAHFFEAE 195
Query: 162 EHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPVPV 221
+ + L V I + L+L+ + V EL S + + V+ L P+
Sbjct: 196 QKQQNLPVTIFLSGNPFLILSAIAPLPENVPELLFCSFLQNKKLSF-VKKAPLSNHPLLC 254
Query: 222 ESEFVFKAK-ITDELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPG-GYE 279
++EF+ + + + EGPF D G Y + P+ + +YH D I+ A + G ++
Sbjct: 255 DAEFILTGEALAGKRRPEGPFGDHFGYYSLTHDFPIFNCQHLYHKKDAIYPATIVGKPFQ 314
Query: 280 HYMLMGLPKEPQIYASVKKVVPKVHGVR-LTEGGCMWLHAVVSITKQHEGDGKNAILAAF 338
+G + + ++P V ++ E G + A V + + ++A+
Sbjct: 315 EDFFLGNKLQEILSPLFPLIMPGVQDLKSYGEAGFHAVAAAVVKERYWKEALRSALRILG 374
Query: 339 AGHPSLKRVV-VVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGSSLDPSG 391
G SL + + + D+ V++ + + + R + D+DL+IIS+ +LD +G
Sbjct: 375 EGQLSLTKFLWITDQSVDLNNFPSLLECVLKRMRFDQDLIIISDTANDTLDYTG 428
>gi|6320748 Ydr539wp [Saccharomyces cerevisiae]
>gi|6686209|sp|Q03034|YD39_YEAST HYPOTHETICAL 56.2 KDA
PROTEIN IN PAD1-YRF1 INTERGENIC REGION
>gi|2132512|pir||S62018 probable membrane protein
YDR539w - yeast (Saccharomyces cerevisiae)
>gi|1165294|gb|AAB64981.1| (U43834) Ydr539wp
[Saccharomyces cerevisiae]
Length = 503
Score = 75.3 bits (182), Expect = 1e-12
Identities = 104/450 (23%), Positives = 184/450 (40%), Gaps = 66/450 (14%)
Query: 4 EILERFDDLVVIEKPVSKEIEITKFLLKYKDKPI---LFKDVEG-----WEVAGNVWSTR 55
++L+ DDL+ I + + +E+ + K + + LFK+++G + + G R
Sbjct: 15 QVLKDEDDLIEITEEIDPNLEVGAIMRKAYESHLPAPLFKNLKGASKDLFSILGCPAGLR 74
Query: 56 E-------RIAKFLSTDNKGLLEILYRAIENPKEYAVVDKAEF----------LKNKESV 98
RIA L D K ++ + + KE + + ++E +
Sbjct: 75 SKEKGDHGRIAHHLGLDPKTTIKEIIDYLLECKEKEPLPPITVPVSSAPCKTHILSEEKI 134
Query: 99 NLLELPIPRYYPKDGGHYF-TSAMVIAK---KDFVNVSFHRMMVLDEER-AAIRLVPRHL 153
+L LP P + DGG Y T M I + K + N S R MV+D++ + + P+H+
Sbjct: 135 HLQSLPTPYLHVSDGGKYLQTYGMWILQTPDKKWTNWSIARGMVVDDKHITGLVIKPQHI 194
Query: 154 YSM---WKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVE 210
+ W ++ E+ + G P +L + + GVSE + AI E+ PV
Sbjct: 195 RQIADSWA-AIGKANEIPFALCFGVPPAAILVSSMPIPEGVSESDYVGAILGESV--PVV 251
Query: 211 VVNLDGIPVPVESEFVFKAKITDELVD---EGPFVDITGTYDIVRKQ----PVVVFEEMY 263
+ + VP SE VF+ ++ L D EGPF ++ G + + Q P+ + M
Sbjct: 252 KCETNDLMVPATSEMVFEGTLS--LTDTHLEGPFGEMHGY--VFKSQGHPCPLYTVKAMS 307
Query: 264 HVDDPIFHALLPG---GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVV 320
+ D+ I PG H ++ L +++ +P + E +WL V
Sbjct: 308 YRDNAILPVSNPGLCTDETHTLIGSLVATEAKELAIESGLPILDAFMPYEAQALWLILKV 367
Query: 321 SI-------TKQHE-----GDGKNAILAAFAGHPSLKRVVVVDEDVNIYDDREVEWAIAT 368
+ T E GD F H +++V +D++I++ +EV WA T
Sbjct: 368 DLKGLQALKTTPEEFCKKVGDIYFRTKVGFIVH----EIILVADDIDIFNFKEVIWAYVT 423
Query: 369 RFQPDRDLVIISNARGSSLDPSGSDGLTAK 398
R P D + + L P S +K
Sbjct: 424 RHTPVADQMAFDDVTSFPLAPFVSQSSRSK 453
>sp|Q9Z8L0|Y328_CHLPN HYPOTHETICAL PROTEIN CPN0328/CP0429 >gi|7468042|pir||A72092
conserved hypothetical protein CP0429 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376606|gb|AAD18477.1| (AE001617) CT085 hypothetical
protein [Chlamydophila pneumoniae CWL029]
>gi|7189353|gb|AAF38271.1| (AE002204) conserved
hypothetical protein [Chlamydophila pneumoniae AR39]
>gi|8978702|dbj|BAA98538.1| (AP002546) CT085
hypothetical protein [Chlamydophila pneumoniae J138]
Length = 584
Score = 74.1 bits (179), Expect = 3e-12
Identities = 97/416 (23%), Positives = 174/416 (41%), Gaps = 42/416 (10%)
Query: 12 LVVIEKPVSKEIEITKF---LLKYKDKPILFKDVEG--WEVAGNVWSTRERIAKFLSTDN 66
L+ + PVS +E+ + +++ + +LF +V G + V N++ T+ R+ + S
Sbjct: 17 LIDVFAPVSPNLELAEIHRRVIEDQGPALLFHNVIGSSFPVLTNLFGTKHRVDQLFSQAP 76
Query: 67 KGLLEILYRAIEN-PKEYAVVDKAEFLK------------------NKESVNLLELPIPR 107
L+ + I + PK ++ + LK + SVNL LP+
Sbjct: 77 DNLIARVAHLISSTPKLSSLWKSRDLLKRISSLGLKKARFRRFPFVSMSSVNLDHLPLLT 136
Query: 108 YYPKDGGHYFTSAMVIAKKDFV---NVSFHRMMVLDEERAAIRLVPR-----HLYSMWKD 159
+P+DGG + T +V + + N+ +R+ ++ + + HLY +
Sbjct: 137 SWPEDGGAFLTLPLVYTESPTLTTPNLGMYRVQRFNQNTMGLHFQIQKGGGMHLY----E 192
Query: 160 SVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVEVVNLDGIPV 219
+ + + L V + + L L+ + VSEL A+ L+ + N P+
Sbjct: 193 AEQKKQNLPVSVFLSGNPFLTLSAIAPLPENVSELLFATF--LQGAKLLYKKTNDHPHPL 250
Query: 220 PVESEFVFKAKI-TDELVDEGPFVDITGTYDIVRKQPVVVFEEMYHVDDPIFHALLPGG- 277
++EF+ + + EGPF D G Y + P ++YH D I+ A + G
Sbjct: 251 LYDAEFILVGESPAGKRRPEGPFGDHFGYYSLQHDFPEFHCHKIYHRKDAIYPATVVGKP 310
Query: 278 YEHYMLMGLPKEPQIYASVKKVVPKVHGVR-LTEGGCMWLHAVVSITKQHEGDGKNAILA 336
Y+ +G + + V+P V ++ E G L A V + A+
Sbjct: 311 YQEDFYIGNKLQEYLSPLFPLVMPGVRRLKSYGESGFHALTAAVVKERYWRESLTTALRI 370
Query: 337 AFAGHPSL-KRVVVVDEDVNIYDDREVEWAIATRFQPDRDLVIISNARGSSLDPSG 391
G SL K ++V D++V + V I R QPDRDL+I S +LD +G
Sbjct: 371 LGEGQLSLTKFLMVTDQEVPLDRFSVVLETILERLQPDRDLIIFSETANDTLDYTG 426
>pir||S20905 hypothetical protein (hlyT 5' region) - Escherichia coli
>gi|41728|emb|CAA46146.1| (X65013) ORF [Escherichia
coli]
Length = 394
Score = 73.0 bits (176), Expect = 6e-12
Identities = 88/385 (22%), Positives = 158/385 (40%), Gaps = 53/385 (13%)
Query: 5 ILERFDDLVVIEKPVSKEIEITKFL---LKYKDKPILFKDVEGWE--VAGNVWSTRERIA 59
+LE+ +L I PV +EIT+ L+ +LF++ +G+ V N++ T +R+A
Sbjct: 15 LLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVA 74
Query: 60 KFLSTDNKGLLEILYRAI------ENPKEYA-VVDKAEFLK------------------- 93
+ ++ L + + + E PK + + DK K
Sbjct: 75 MGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKI 134
Query: 94 -NKESVNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERAAIRLV 149
+ + V+L +PI +P+D T + + + K+ N+ +R ++ + + +R +
Sbjct: 135 VSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWL 194
Query: 150 PRHL----YSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAF 205
Y W + GE V + +G +L T V +SE A +
Sbjct: 195 SHRGGALDYQEWC-AAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLR---- 249
Query: 206 GKPVEVVNL--DGIPVPVESEFVFKAKITD-ELVDEGPFVDITGTYDIVRKQPVVVFEEM 262
G EVV + + VP +E V + I E EGP+ D TG Y+ V PV +
Sbjct: 250 GTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHI 309
Query: 263 YHVDDPIFHALLPG-GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVS 321
+D I+H+ G + ++G+ ++K P++ L GC + AVV+
Sbjct: 310 TQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVT 369
Query: 322 ITKQH-----EGDGKNAILAAFAGH 341
I KQ+ DG+ +L H
Sbjct: 370 IKKQYATREARHDGRLVVLTPVYVH 394
>pir||S30733 hypothetical protein o394 - Escherichia coli
>gi|148242|gb|AAA67639.1| (M87049) o394 [Escherichia
coli]
Length = 394
Score = 73.0 bits (176), Expect = 6e-12
Identities = 85/370 (22%), Positives = 153/370 (40%), Gaps = 48/370 (12%)
Query: 5 ILERFDDLVVIEKPVSKEIEITKFL---LKYKDKPILFKDVEGWE--VAGNVWSTRERIA 59
+LE+ +L I PV +EIT+ L+ +LF++ +G+ V N++ T +R+A
Sbjct: 15 LLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVA 74
Query: 60 KFLSTDNKGLLEILYRAI------ENPKEYA-VVDKAEFLK------------------- 93
+ ++ L + + + E PK + + DK K
Sbjct: 75 MGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNXXTKRLRGAPCQQKI 134
Query: 94 -NKESVNLLELPIPRYYPKDGGHYFTSAMVIAK---KDFVNVSFHRMMVLDEERAAIRLV 149
+ + V+L +PI +P+D T + + + K+ N+ +R ++ + + +R +
Sbjct: 135 VSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWL 194
Query: 150 PRHL----YSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAF 205
Y W + GE V + +G +L T V +SE A +
Sbjct: 195 SHRGGALDYQEWC-AAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLR---- 249
Query: 206 GKPVEVVNL--DGIPVPVESEFVFKAKITD-ELVDEGPFVDITGTYDIVRKQPVVVFEEM 262
G EVV + + VP +E V + I E EGP+ D TG Y+ V PV +
Sbjct: 250 GTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHI 309
Query: 263 YHVDDPIFHALLPG-GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLTEGGCMWLHAVVS 321
+D I+H+ G + ++G+ ++K P++ L GC + AVV+
Sbjct: 310 TQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVT 369
Query: 322 ITKQHEGDGK 331
I KQ+ K
Sbjct: 370 IKKQYAXHXK 379
>pir||D83614 conserved hypothetical protein PA0254 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946094|gb|AAG03643.1|AE004463_8 (AE004463)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 496
Score = 72.2 bits (174), Expect = 1e-11
Identities = 81/303 (26%), Positives = 137/303 (44%), Gaps = 30/303 (9%)
Query: 96 ESVNLLELPIPRYYPKDGGHYFTS--AMVIAKKD--FVNVSFHRMMVLDEERAAIRLVP- 150
E V+L P+P + +DGG YF + V+ D + + S R+M++D A +P
Sbjct: 127 EQVDLTRFPVPLLHEQDGGRYFGTYGFHVVQTPDGSWDSWSVGRLMLVDRNTLAGPTIPT 186
Query: 151 RHLYSMWKDSVEHGEELEVRIVVGNPVHLLLAGATSVAYGVSELEIASAISLEAFGKPVE 210
+H+ + + G+ + +G P L A + GVSE A+ G+PVE
Sbjct: 187 QHIGIIREQWRRLGKPTPWAMALGAPPAALAAAGMPLPEGVSEAGYVGAL----VGEPVE 242
Query: 211 VV--NLDGIPVPVESEFVFKAKIT-DELVDEGPFVDITG-TYDIVRKQPVVVFEEMYHVD 266
VV +G+ VP +E V + +I+ DE EGP + G ++ I + QP+ + D
Sbjct: 243 VVRTQTNGLWVPANTEIVLEGEISLDETALEGPMGEYHGYSFPIGKPQPLFHVHALSFRD 302
Query: 267 DPIFHALLPG--GYEHYMLMGLPKEPQIYASVKKVVPKVHGVRLT-EGGCMWLHAVVSIT 323
PI + G E++ + G Q+ + V V + E W AV+SI
Sbjct: 303 QPILPICVAGTPPEENHTIWGTMISAQLLDVAQNAGLPVDMVWCSYEAATCW--AVLSID 360
Query: 324 KQH-EGDGKNA----------ILAAFAGHPSLKRVVVVDEDVNIYDDREVEWAIATRFQP 372
Q G +A + + AGH + ++++V D+++ + +V WA+ATR P
Sbjct: 361 VQRLAALGTDAAAFAARVAETVFGSHAGH-LVPKLILVGNDIDVTEIDQVVWALATRAHP 419
Query: 373 DRD 375
D
Sbjct: 420 LHD 422
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.405
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163179702
Number of Sequences: 2977
Number of extensions: 7315262
Number of successful extensions: 15435
Number of sequences better than 1.0e-10: 43
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 15303
Number of HSP's gapped (non-prelim): 47
length of query: 420
length of database: 189,106,746
effective HSP length: 56
effective length of query: 364
effective length of database: 155,591,474
effective search space: 56635296536
effective search space used: 56635296536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)