BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1802 (PAB1802) DE:Hypothetical protein
(414 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75129 hypothetical protein PAB1802 - Pyrococcus abyssi (st... 841 0.0
sp|Q58161|Y751_METJA HYPOTHETICAL PROTEIN MJ0751 >gi|2128474|pir... 174 2e-42
emb|CAB56750.2| (X56616) putative transposase [Acidianus ambival... 166 3e-40
gb|AAK41463.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 160 3e-38
gb|AAK41334.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 159 6e-38
gb|AAK41574.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 156 5e-37
gb|AAK42025.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 153 2e-36
gb|AAK43271.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 153 3e-36
gb|AAK43048.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 152 1e-35
gb|AAK41723.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 150 2e-35
gb|AAK41873.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 150 3e-35
gb|AAK41431.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 147 2e-34
sp|Q59029|YG35_METJA HYPOTHETICAL PROTEIN MJ1635 >gi|2128985|pir... 142 8e-33
gb|AAK43254.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 141 2e-32
pir||A75156 hypothetical protein PAB2077 - Pyrococcus abyssi (st... 119 7e-26
emb|CAC11617.1| (AL445064) transposase related protein [Thermopl... 109 8e-23
pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (st... 108 1e-22
gb|AAK42165.1| Conserved hypothetical protein [Sulfolobus solfat... 101 2e-20
pir||A72303 hypothetical protein TM1026 - Thermotoga maritima (s... 101 2e-20
emb|CAC11704.1| (AL445064) conserved hypothetical protein [Therm... 99 1e-19
pir||D72426 hypothetical protein TM0047 - Thermotoga maritima (s... 97 3e-19
pir||A72332 hypothetical protein TM0776 - Thermotoga maritima (s... 96 6e-19
pir||C72205 hypothetical protein TM1831 - Thermotoga maritima (s... 95 1e-18
pir||C72226 hypothetical protein TM1677 - Thermotoga maritima (s... 94 4e-18
sp|Q60328|Y012_METJA HYPOTHETICAL PROTEIN MJ0012 >gi|2128079|pir... 87 4e-16
gb|AAK41095.1| Orf in partial transposon ISC1913 [Sulfolobus sol... 85 1e-15
emb|CAB57506.1| (Y18930) hypothetical protein [Sulfolobus solfat... 85 1e-15
gb|AAK41583.1| Third ORF in transposon ISC1778 [Sulfolobus solfa... 80 5e-14
gb|AAK41584.1| Second ORF in transposon ISC1778 [Sulfolobus solf... 80 5e-14
gb|AAK42109.1| Second ORF in transposon ISC1913 [Sulfolobus solf... 80 6e-14
pir||E72413 hypothetical protein TM0135 - Thermotoga maritima (s... 78 2e-13
pir||E72307 transposase-related protein - Thermotoga maritima (s... 77 4e-13
gb|AAK42158.1| Third ORF in transposon ISC1913 [Sulfolobus solfa... 76 7e-13
gb|AAG18666.1| (AE004971) Vng0026c [Halobacterium sp. NRC-1] 75 2e-12
pir||T36152 probable transposase - Streptomyces coelicolor >gi|5... 73 5e-12
gb|AAG18873.1| (AE004990) Vng0286c [Halobacterium sp. NRC-1] 73 8e-12
gb|AAG18653.1| (AE004970) Vng0013c [Halobacterium sp. NRC-1] 69 9e-11
>pir||E75129 hypothetical protein PAB1802 - Pyrococcus abyssi (strain Orsay)
>gi|5458261|emb|CAB49750.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 414
Score = 841 bits (2150), Expect = 0.0
Identities = 414/414 (100%), Positives = 414/414 (100%)
Query: 1 MQNNSSKNETVVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQLRDK 60
MQNNSSKNETVVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQLRDK
Sbjct: 1 MQNNSSKNETVVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQLRDK 60
Query: 61 LLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGKKVRKPRLRKKFVYVKSTLFTLKGFIL 120
LLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGKKVRKPRLRKKFVYVKSTLFTLKGFIL
Sbjct: 61 LLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGKKVRKPRLRKKFVYVKSTLFTLKGFIL 120
Query: 121 KITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFEPRD 180
KITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFEPRD
Sbjct: 121 KITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFEPRD 180
Query: 181 WMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLKKYS 240
WMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLKKYS
Sbjct: 181 WMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLKKYS 240
Query: 241 GREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLNRKLSKWNVREL 300
GREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLNRKLSKWNVREL
Sbjct: 241 GREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLNRKLSKWNVREL 300
Query: 301 QRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVEDRDFIAVLN 360
QRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVEDRDFIAVLN
Sbjct: 301 QRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVEDRDFIAVLN 360
Query: 361 LRMWGSGVTPKGLEVSRASTLNERPMKTNPYGIMAIEEKQRIGLKFHKITPKPP 414
LRMWGSGVTPKGLEVSRASTLNERPMKTNPYGIMAIEEKQRIGLKFHKITPKPP
Sbjct: 361 LRMWGSGVTPKGLEVSRASTLNERPMKTNPYGIMAIEEKQRIGLKFHKITPKPP 414
>sp|Q58161|Y751_METJA HYPOTHETICAL PROTEIN MJ0751 >gi|2128474|pir||G64393 hypothetical
protein MJ0751 - Methanococcus jannaschii
>gi|1591465|gb|AAB98747.1| (U67521) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 278
Score = 174 bits (437), Expect = 2e-42
Identities = 102/262 (38%), Positives = 146/262 (54%), Gaps = 19/262 (7%)
Query: 112 LFTLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVK 171
LF +G +KI PR++ + INL Y ++E +GN ++G + + D +++ F K
Sbjct: 2 LFKFEGDKIKIITAPRKF-ITINLVVSDYQKKFIEEWKNGNFKIGEVIIKKDSIIIPFKK 60
Query: 172 TVEYFEPRDWMSIDINLTNVTVLAG------LTVYRFDTRELYHIHRVYELKRQKIQGIS 225
V M+IDIN N+T + R D +L IH + KR+KIQ
Sbjct: 61 VVNPKNFEHIMTIDINEKNITYSIFDKDGNVIKTTRLDVYKLKRIHENFSKKREKIQ--- 117
Query: 226 AWNKRLSEK------LLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKE 279
K+LS K L++KYSGREK + D+LHK++ ++ A + + I++EDL I+E
Sbjct: 118 ---KKLSNKPMKLKTLMEKYSGREKRKVEDYLHKISKFLISEALKYNVKILMEDLTNIRE 174
Query: 280 RVLGGSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEG 339
V SK+ R+L++WN +LQ IEYKAKW G+ V YVNP +SK CP CG L P
Sbjct: 175 AVNKKSKNFRRRLNRWNFSKLQFFIEYKAKWDGLDVEYVNPSRTSKLCPICGCKLDPNGQ 234
Query: 340 RLMKCLKCGLVEDRDFIAVLNL 361
RL+KC C LV DRD +A NL
Sbjct: 235 RLLKCNNCNLVFDRDVVATFNL 256
>emb|CAB56750.2| (X56616) putative transposase [Acidianus ambivalens]
Length = 427
Score = 166 bits (417), Expect = 3e-40
Identities = 109/312 (34%), Positives = 167/312 (52%), Gaps = 20/312 (6%)
Query: 55 KQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLF 113
K LRD+L + K A+ YVD AIN +++S+RR+ KG+ + KP LRK +V +KSTL
Sbjct: 82 KILRDELEKINKLASTYVDKAINDTYSILRSWRRRAEKGQASLSKPTLRKVYVRIKSTLR 141
Query: 114 TLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGN----LRLGGLFLFPDKLVLNF 169
+ G ++IT+ P Y YI W L LG + DK+ L F
Sbjct: 142 KVDGESVRITVRP-----------YEYITFSWSHTWFSRRVKGLELGEPIIKEDKVYLPF 190
Query: 170 VKTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNK 229
+ +F P D+++ID NL + G F + LY + ELKR KIQ ++ +
Sbjct: 191 RYKLPWFTPLDFLAIDSNLYTLDAYDGEKFVTFSLKGLYSMKYGMELKRSKIQSFASKHG 250
Query: 230 RLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLN 289
R ++L++KYS RE+NR D++HK NK+ + ++E LN +E + SL+
Sbjct: 251 RKGKELMRKYSHRERNRVLDYVHKFVNKL--LEMYPMTTFVVEKLNK-QEMFEDANDSLS 307
Query: 290 RKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGL 349
+K+SK R + R+++YKA +G V VNP+ +S++CP C G + + GR C +CG
Sbjct: 308 KKISKTVWRSIHRILKYKAPLYGSFVKEVNPRLTSRSCPRC-GWVSRKVGRTFHCERCGF 366
Query: 350 VEDRDFIAVLNL 361
DR A LN+
Sbjct: 367 TMDRQLNASLNI 378
>gb|AAK41463.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 422
Score = 160 bits (401), Expect = 3e-38
Identities = 109/364 (29%), Positives = 189/364 (50%), Gaps = 27/364 (7%)
Query: 55 KQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLF 113
K LR++L + A+HYVD AIN ++KS+R++ KG+ + KPR++K +V +K+TL
Sbjct: 76 KPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLR 135
Query: 114 TLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGNLR---LGGLFLFPDKLVLNFV 170
+ G ++IT+ P EY P K +S +R LG + +K+ L F
Sbjct: 136 KVVGESVRITVRPHEYIT----------FPWSKSWFSRRVRELELGEPIIKEEKVYLPFR 185
Query: 171 KTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKR 230
+ + P ++++ID NL + G ++LY + E+KR K+Q ++ + +
Sbjct: 186 YKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFASKHTK 245
Query: 231 LSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLNR 290
+L++KYS RE+NR DF+HK N ++ + + D G+ + ++SL+R
Sbjct: 246 RGRELMRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGM---FVDANESLSR 302
Query: 291 KLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLV 350
K+S+ R + R+++YKA +G V VNP +S++CP C G + + G+ +C +CG
Sbjct: 303 KISRTVWRSIHRVLKYKAPLYGSFVKEVNPYLTSRSCPRC-GFVSRKVGKTFECERCGFK 361
Query: 351 EDRDFIAVLNLRMWGSGVTPKGLEVSRA-----STLNERPMKTNPYGIMAIEEKQRIGLK 405
DR A LN+ + G P E++R + R M +G + RI +K
Sbjct: 362 LDRQLNASLNIYLKMCGF-PHIREIARVWVGVIPLMGRRGMNVRDFG---EAQGLRINIK 417
Query: 406 FHKI 409
+H+I
Sbjct: 418 YHEI 421
>gb|AAK41334.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 422
Score = 159 bits (398), Expect = 6e-38
Identities = 123/428 (28%), Positives = 209/428 (48%), Gaps = 44/428 (10%)
Query: 7 KNETVVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFER------------ 54
+ E V YSI E I+EY + + + + N K ++
Sbjct: 13 EEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKK 72
Query: 55 ---KQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKS 110
K LR++L + A+HYVD AIN ++KS+R++ KG+ + KPR++K +V +K+
Sbjct: 73 EVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKT 132
Query: 111 TLFTLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGNLR---LGGLFLFPDKLVL 167
TL + G ++IT+ P EY P K +S +R LG + +K+ L
Sbjct: 133 TLRKVVGESVRITVRPHEYIT----------FPWSKSWFSRRVRELELGEPIIKEEKVYL 182
Query: 168 NFVKTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAW 227
F + + P ++++ID NL + G ++LY + E+KR K+Q ++
Sbjct: 183 PFRYKLPWVTPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFASK 242
Query: 228 NKRLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVL-GGSK 286
+ + +LL+KYS RE+NR DF+HK N ++ + + E LN KE + +
Sbjct: 243 HTKRGRELLRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAV--EKLN--KESMFKDANG 298
Query: 287 SLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLK 346
SL+RK+S+ R + R+++YKA +G V VNP +S++CP C G + + G+ +C +
Sbjct: 299 SLSRKISRTVWRSIHRVLKYKAPLYGSFVKEVNPHLTSRSCPRC-GFVSRKVGKTFECER 357
Query: 347 CGLVEDRDFIAVLNLRMWGSGVTPKGLEVSRA-----STLNERPMKTNPYGIMAIEEKQR 401
CG DR A LN+ + G P E++R + R M +G + R
Sbjct: 358 CGFKLDRQLNASLNIYLKMCGF-PHIREIARVWVGVIPLMGRRGMNVRDFG---EAQGLR 413
Query: 402 IGLKFHKI 409
+ +K+H+I
Sbjct: 414 VDIKYHEI 421
>gb|AAK41574.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 423
Score = 156 bits (390), Expect = 5e-37
Identities = 110/365 (30%), Positives = 187/365 (51%), Gaps = 27/365 (7%)
Query: 55 KQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLF 113
K LRD+L + A+HYVD AIN ++KS+R++ KG+ + KPR++K +V +K+TL
Sbjct: 75 KPLRDELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLR 134
Query: 114 TLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGN----LRLGGLFLFPDKLVLNF 169
+ G ++IT+ P Y YI + W L LG + +K+ L F
Sbjct: 135 KVVGESVRITVRP-----------YEYITFSWSKSWFSRRVRELELGEPIIKEEKVYLPF 183
Query: 170 VKTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNK 229
+ + P ++++ID NL + G ++LY + E+KR K+Q ++ +
Sbjct: 184 RYKLPWATPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFASKHT 243
Query: 230 RLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLN 289
+ +LL+KYS RE+NR DF+HK N ++ + + E LN + + + SL+
Sbjct: 244 KRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAV--EKLNK-ESMFVDANDSLS 300
Query: 290 RKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGL 349
RK+S+ R + R+++YKA +G V VNP+ +S++CP C G + + G+ +C +CG
Sbjct: 301 RKISRTVWRSIHRVLKYKAPLYGSFVKEVNPRFTSRSCPRC-GFVSRKVGKTFECERCGF 359
Query: 350 VEDRDFIAVLNLRMWGSGVTPKGLEVSRA-----STLNERPMKTNPYGIMAIEEKQRIGL 404
DR A LN+ + G P +++R + R M P + RI +
Sbjct: 360 KLDRQLNASLNIYLKMCGF-PHIRDIARVWVGVIPLMGRRGMNGFPRD-FGEAQGLRIDI 417
Query: 405 KFHKI 409
K+H+I
Sbjct: 418 KYHEI 422
>gb|AAK42025.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 419
Score = 153 bits (384), Expect = 2e-36
Identities = 120/425 (28%), Positives = 202/425 (47%), Gaps = 41/425 (9%)
Query: 7 KNETVVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFT--------------KF 52
+ E V YSI E I+EY + + + + N K K
Sbjct: 13 EEEYVYFTYSIKNSEREKSKELIKEYRTLLQKAIDHLWNLTKIQVRKNGNYKITLPKKKE 72
Query: 53 ERKQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKST 111
K LR++L + A+HYVD AIN ++ S+R++ KG+ + KPR++K +V +K+T
Sbjct: 73 VYKPLREELEKINHLASHYVDKAINDAFSILTSWRKRAIKGRASIEKPRVKKAYVRIKTT 132
Query: 112 LFTLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGN----LRLGGLFLFPDKLVL 167
L + G ++IT+ P Y YI + W L LG + +K+ L
Sbjct: 133 LRKVVGESVRITVRP-----------YEYITFSWSKSWFSRRVRELELGEPIIKEEKVYL 181
Query: 168 NFVKTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAW 227
F + + P ++++ID NL + G ++LY + E+KR K+Q ++
Sbjct: 182 PFRYKLPWVTPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFASK 241
Query: 228 NKRLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVL-GGSK 286
+ + +L++KYS RE+NR DF+HK N ++ + + E LN KE + +
Sbjct: 242 HTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAV--EKLN--KESMFKDAND 297
Query: 287 SLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLK 346
SL+RK+S+ R + R+++YKA +G V VNP +S++CP C + + G+ +C +
Sbjct: 298 SLSRKISRTVWRSIHRVLKYKAPLYGSFVKEVNPYLTSRSCPRC-RFVSRKVGKTFECER 356
Query: 347 CGLVEDRDFIAVLN--LRMWGSGVTPKGLEVSRASTLNERPMKTNPYGIMAIEEKQRIGL 404
CG DR A LN L+M G + V + R M +G + R+ +
Sbjct: 357 CGFKLDRQLNASLNIYLKMCGFPHIRSRVWVGVIPLMGRRGMNVRDFG---EAQGLRVDI 413
Query: 405 KFHKI 409
K+H+I
Sbjct: 414 KYHEI 418
>gb|AAK43271.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 422
Score = 153 bits (383), Expect = 3e-36
Identities = 117/418 (27%), Positives = 210/418 (49%), Gaps = 41/418 (9%)
Query: 7 KNETVVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQ----LRDKLL 62
K++ ++K Y +Q + I+ + ++ +++ + K T ++K+ LR++L
Sbjct: 30 KSKELIKEYRTLLQ------KAIDYLWNLTKIQVRKKNGSYKITLPKKKEVYKPLREELE 83
Query: 63 EDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLFTLKGFILK 121
+ A+HYVD AIN ++KS+R++ KG+ + KP L+K +V +K+TL + G ++
Sbjct: 84 KINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPTLKKAYVRIKTTLRKVVGESVR 143
Query: 122 ITIIPREYYLEINLANYPYILPLLKEVWSGN----LRLGGLFLFPDKLVLNFVKTVEYFE 177
IT+ P Y YI + W L LG + +K+ L F + +
Sbjct: 144 ITVRP-----------YEYITFSWSKSWFSRRVRELELGEPIIKEEKVYLPFRYKLPWVT 192
Query: 178 PRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLK 237
P ++++ID NL + G ++LY + E+KR K+Q ++ + + +L++
Sbjct: 193 PVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFASKHTKRGRELMR 252
Query: 238 KYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVL-GGSKSLNRKLSKWN 296
KYS RE+NR DF+HK N ++ + + E LN KE + + SL+RK+S+
Sbjct: 253 KYSHRERNRVLDFVHKFVNTLLDLYPMTFFAV--EKLN--KESMFKDANGSLSRKISRTV 308
Query: 297 VRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVEDRDFI 356
R + R+++YKA +G V VNP +S++CP C G + + G+ +C +CG DR
Sbjct: 309 WRSIHRVLKYKAPLYGSFVKEVNPHLTSRSCPRC-GFVSRKVGKTFECERCGFKLDRQLN 367
Query: 357 AVLNLRMWGSGVTPKGLEVSRA-----STLNERPMKTNPYGIMAIEEKQRIGLKFHKI 409
A LN+ + G P ++ R + R M +G + RI +K+H+I
Sbjct: 368 ASLNIYLKMCGF-PHIRDIPRVWVGVIPLMGRRGMNVRDFG---EAQGLRIDIKYHEI 421
>gb|AAK43048.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 424
Score = 152 bits (379), Expect = 1e-35
Identities = 110/376 (29%), Positives = 185/376 (48%), Gaps = 37/376 (9%)
Query: 7 KNETVVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFER------------ 54
+ E V YSI E I EY + + + + N K ++
Sbjct: 13 EEEYVYFTYSIKNDKREKSKELIREYTTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKR 72
Query: 55 ---KQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKS 110
K LR++L + A+HYVD AIN ++KS+R++ KG+ + KPR++K +V +K+
Sbjct: 73 EVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKT 132
Query: 111 TLFTLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGN----LRLGGLFLFPDKLV 166
TL + G ++IT+ P EY I + W L LG + +K+
Sbjct: 133 TLRKVVGESVRITVRPHEY-----------ITFSWSKSWFSRRVRELELGEPIIKEEKVY 181
Query: 167 LNFVKTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISA 226
L F + + P D+++ID NL + G ++LY + E+KR K+Q ++
Sbjct: 182 LPFRYKLPWATPVDFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS 241
Query: 227 WNKRLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVL-GGS 285
+ + +L++KYS RE+NR DF+HK N ++ + + E LN KE + +
Sbjct: 242 KHTKRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAV--EKLN--KESMFKDAN 297
Query: 286 KSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCL 345
SL+RK+S+ + R+++YKA +G V VNP+ +S++CP C G + + G+ +C
Sbjct: 298 DSLSRKISRTVWGSIHRVLKYKAPLYGSFVKEVNPRFTSRSCPRC-GFVSRKVGKTFECE 356
Query: 346 KCGLVEDRDFIAVLNL 361
+CG DR A LN+
Sbjct: 357 RCGFKLDRQLNASLNI 372
>gb|AAK41723.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 400
Score = 150 bits (376), Expect = 2e-35
Identities = 96/312 (30%), Positives = 165/312 (52%), Gaps = 20/312 (6%)
Query: 55 KQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLF 113
K LR++L + A+HYVD AIN ++KS+R++ KG+ + KPR++K +V +K+TL
Sbjct: 75 KPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIGKPRVKKAYVRIKTTLR 134
Query: 114 TLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGN----LRLGGLFLFPDKLVLNF 169
+ G ++IT+ P Y YI + W L LG + +K+ L+F
Sbjct: 135 KVVGESVRITVRP-----------YEYITFSWSKSWFSRRVRELELGEPVIKEEKVYLSF 183
Query: 170 VKTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNK 229
+ + P ++++ID NL + G ++LY + E+KR K+Q ++ +
Sbjct: 184 RYKLPWATPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFASKHT 243
Query: 230 RLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLN 289
+ +LL+KYS RE+NR DF+HK N ++ + + D G+ + ++SL+
Sbjct: 244 KRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLDKEGM---FVDANESLS 300
Query: 290 RKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGL 349
RK+S + R++ YKA +G V VNP+ +S++CP C G + + G+ +C +CG
Sbjct: 301 RKISLTVWGSIHRVLRYKAPLYGSFVKEVNPRFTSRSCPRC-GFVSRKVGKTFECERCGF 359
Query: 350 VEDRDFIAVLNL 361
DR A LN+
Sbjct: 360 KLDRQLNASLNI 371
>gb|AAK41873.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 422
Score = 150 bits (375), Expect = 3e-35
Identities = 109/365 (29%), Positives = 181/365 (48%), Gaps = 29/365 (7%)
Query: 55 KQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLF 113
K LRD+L + A+HYVD AIN ++ S+R++ KG+ + KP L+K +V VKSTL
Sbjct: 76 KPLRDELEKINHLASHYVDKAINNAFSIITSWRKRAIKGRASIEKPTLKKAYVKVKSTLR 135
Query: 114 TLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGN----LRLGGLFLFPDKLVLNF 169
+ G ++IT+ P EY I + W L LG + +K+ L F
Sbjct: 136 KVVGESVRITVRPHEY-----------ITFSWSKSWFSRRVRELELGEPIIKEEKVYLPF 184
Query: 170 VKTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNK 229
+ + P ++++ID NL + G ++LY + E+KR K+Q ++ +
Sbjct: 185 RYKLPWATPVNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFASKHT 244
Query: 230 RLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLN 289
+ +LL+KYS RE+NR DF+HK N ++ + + D + + + SL+
Sbjct: 245 KRGRELLRKYSHRERNRVLDFVHKFVNTLLDLYPVTFFAVEKLDKESMFK---DANDSLS 301
Query: 290 RKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGL 349
RK+S+ + +++EYKA +G V VNP +S++CP C G + + G+ +C +CG
Sbjct: 302 RKISRTVWGSIHKVLEYKAPLYGSFVKEVNPYLTSRSCPRC-GFVSRKVGKTFECERCGF 360
Query: 350 VEDRDFIAVLNLRMWGSGVTPKGLEVSRA-----STLNERPMKTNPYGIMAIEEKQRIGL 404
DR A LN+ + G P +V R + R M +G + RI +
Sbjct: 361 KLDRQLNASLNIYLKMCGF-PHIRDVPRVWVGVIPLMGRRGMNVRDFG---EAQGLRIDI 416
Query: 405 KFHKI 409
K+H+I
Sbjct: 417 KYHEI 421
>gb|AAK41431.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 422
Score = 147 bits (367), Expect = 2e-34
Identities = 118/429 (27%), Positives = 203/429 (46%), Gaps = 46/429 (10%)
Query: 7 KNETVVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFER------------ 54
+ E V YSI E I+EY + + + + N K ++
Sbjct: 13 EEEYVHFTYSIKNSEREKSKELIKEYRTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKK 72
Query: 55 ---KQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKS 110
K LR++L + A+HYVD AIN ++KS+R++ KG+ + KPR++K +V +K+
Sbjct: 73 EVYKPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKT 132
Query: 111 TLFTLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGN----LRLGGLFLFPDKLV 166
TL + G ++IT+ P Y YI + W L LG + +K+
Sbjct: 133 TLRKVVGESVRITVRP-----------YEYITFSWSKSWFSRRVRELELGEPIIKEEKVY 181
Query: 167 LNFVKTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISA 226
L+F + + P ++++ID NL + G ++LY + E+KR K+Q ++
Sbjct: 182 LSFRYKLPWVTPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSMKYSMEVKRAKVQSFAS 241
Query: 227 WNKRLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVL-GGS 285
+ +L++KYS RE+N DF+ K N ++ + + E LN KE + +
Sbjct: 242 KYTKRGRELMRKYSHRERNSVLDFVRKFVNALLDLYPITFFAV--EKLN--KESMFKDAN 297
Query: 286 KSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCL 345
SL+RK+S+ R + R++ YKA +G V VNP +S++CP C G + + G+ +C
Sbjct: 298 DSLSRKISRTVWRSIHRVLRYKAPLYGSFVKEVNPHLTSRSCPRC-GFVSRKVGKTFECE 356
Query: 346 KCGLVEDRDFIAVLNLRMWGSGVTPKGLEVSRA-----STLNERPMKTNPYGIMAIEEKQ 400
+CG DR A LN+ + G P ++ R + R M +G +
Sbjct: 357 RCGFKLDRQLNASLNIYLKMCGF-PHIRDIPRVWVGVIPLMGRRGMNVRDFG---EAQGL 412
Query: 401 RIGLKFHKI 409
RI +++H+I
Sbjct: 413 RIDIEYHEI 421
>sp|Q59029|YG35_METJA HYPOTHETICAL PROTEIN MJ1635 >gi|2128985|pir||A64504 hypothetical
protein MJ1635 - Methanococcus jannaschii
>gi|1500535|gb|AAB99664.1| (U67604) M. jannaschii
predicted coding region MJ1635 [Methanococcus
jannaschii]
Length = 414
Score = 142 bits (354), Expect = 8e-33
Identities = 121/417 (29%), Positives = 199/417 (47%), Gaps = 58/417 (13%)
Query: 1 MQNNSSKNETVVKAYSI----PIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFE--- 53
+++N VV +Y + P++A F+ E + I N K+TK +
Sbjct: 7 LKDNKELLYQVVLSYKVSHNYPLKA------FLIECKNKLNECIDMIWNNIKYTKKDNPK 60
Query: 54 -------RKQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGKKVR-KPRLRKKF 105
+++LR+KLLE+W YA+HY+D I +++S+ ++G + + KP ++ F
Sbjct: 61 LPKSNEFKRELRNKLLENWNYASHYIDGIIKTSYSILQSWASNYKRGYRTKTKPIAKRLF 120
Query: 106 VYVKSTLFTL---KGFILKITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFP 162
V VK+TL KG I +ITI PR+ YL +N+ N + +K NL +G + L
Sbjct: 121 VRVKTTLIKYDKEKGEI-RITIKPRKDYLILNIKN-EWFFDKVK-----NLTIGEIILKE 173
Query: 163 DKLVLNFVKTVEYFEPRDWMSIDINLTNVTVLAGLTVY-RFDTRELYHIHRVYELKRQKI 221
+ L F + Y + + +D NL ++ + + + R D EL+ I VY+ +KI
Sbjct: 174 KETFLTFKDNLNYSDKGMIVGVDSNLRSLDLFHPIEGWTRVDLTELHRIKEVYD---RKI 230
Query: 222 QGISAWNKRLSEKLLKKYS---GREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIK 278
+ K+ + ++K + R +NR +DFLHKL ++ + + + EDLN
Sbjct: 231 DFLKKLLKKFPLRAMRKINRLFERRRNRVKDFLHKLTIQLSRLFPDAI--FVFEDLN--- 285
Query: 279 ERVLGGSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQE 338
+R + SK NRK+ + N L I YK V+ VNP +S CP CG + QE
Sbjct: 286 KRRMYKSKYFNRKIDRVNWNGLIEKISYK-----TIVILVNPAYTSTICPICGSRMESQE 340
Query: 339 GRLMKCLKCGLVEDRDFIAVLNL----------RMWGSGVTPKGLEVSRASTLNERP 385
G+++ C C +R + N+ M GSGVT G+EVS + P
Sbjct: 341 GQVVYCSNCLNSFNRQLVGCYNIFKRGLGNIKEIMGGSGVTTTGVEVSFGKLMTPNP 397
>gb|AAK43254.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 423
Score = 141 bits (351), Expect = 2e-32
Identities = 94/319 (29%), Positives = 161/319 (50%), Gaps = 34/319 (10%)
Query: 55 KQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLF 113
K LR++L + A+HYVD AIN ++KS+R++ KG+ + KP ++ +V +K+TL
Sbjct: 75 KPLREELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPGVKNAYVRIKTTLR 134
Query: 114 TLKGFILKITIIPREYYLEINLANYPYILPLLKEVWSGN----LRLGGLFLFPDKLVLNF 169
+ G ++IT+ P Y YI +W L LG + +K+ L F
Sbjct: 135 KVVGESVRITVRP-----------YEYITFSWSNLWFSRRVRELELGEPIIKEEKVYLPF 183
Query: 170 VKTVEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNK 229
+ + P ++++ID NL + G ++LY + E+KR K+Q ++ +
Sbjct: 184 RYKLPWATPLNFLAIDSNLYTLDAYDGEKFITISLKQLYSLKYSMEVKRAKVQSFASKHT 243
Query: 230 RLSEKLLKKYSGREKNRARDFLHKLANKIVGI-------ARERRMGIILEDLNGIKERVL 282
+ +LL+KYS RE+NR DF+ K N ++ + + + +D NG
Sbjct: 244 KRGRELLRKYSHRERNRVLDFVRKFVNALLDLYPMTFFAVEKLSKESMFKDANG------ 297
Query: 283 GGSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLM 342
SL+RK+S+ + R+++YKA +G V VNP +S++CP C G + + G+
Sbjct: 298 ----SLSRKISRTVWGSIHRVLKYKAPLYGSFVKEVNPHFTSRSCPRC-GFVSRKVGKTF 352
Query: 343 KCLKCGLVEDRDFIAVLNL 361
+C +CG DR A LN+
Sbjct: 353 ECERCGFKLDRQLNASLNI 371
>pir||A75156 hypothetical protein PAB2077 - Pyrococcus abyssi (strain Orsay)
>gi|5457838|emb|CAB49328.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 429
Score = 119 bits (295), Expect = 7e-26
Identities = 105/369 (28%), Positives = 172/369 (46%), Gaps = 28/369 (7%)
Query: 11 VVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQLRDKLLEDW--KYA 68
V+K+ +P + + +E Y M +L + + + K + K L + +
Sbjct: 8 VLKSERLPKKIFKVFIELEGMYREMLLQILPFAVQNGITSPVKLKAEKYKFLRELYPQLP 67
Query: 69 NHYVDSAINQMLGLVKSYRRKLRKG-KKVRKPRLRKKFVYVKSTLFTLKGFILKITIIPR 127
+HY + + KS+ ++ R+G K P +R +++ L+ + + I I
Sbjct: 68 SHYAYTVCQDAVTRAKSFLKRKRRGLAKKECPEVRSVSIWLDDHLW--RAGLTFIRIATH 125
Query: 128 EYYLEINLANYPYILPLLKEVWSG--------NLRLGGLFLFPDKLVLNFVKTVEYFEPR 179
+ ++E+ L + Y + W + R L +F L F K V ++ +
Sbjct: 126 KGWIEVGLEGHKYYWKTVNSDWKLASQSRVKLDKRERRLIVF-----LVFYKDVREYKAK 180
Query: 180 DWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLKKY 239
W+ ID+N NVT L F+T + I Y +R+K+Q W+K+L + KK
Sbjct: 181 SWIPIDVNEDNVTALIDFKPVIFETNQK-KITLGYYYRRKKVQ--EKWDKKLGSRNGKKR 237
Query: 240 ----SGREKNRARDFLHKLANKIVGIARERRMGIILEDL-NGIKERVLG--GSKSLNRKL 292
REK++ RD +KLA IV AR+R GI+LE L + R+L +K L ++
Sbjct: 238 RILGKLREKDKKRDIRNKLAKIIVEEARKRNAGIVLERLPKNVPRRMLEKVSNKQLRHRI 297
Query: 293 SKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVED 352
+ +Q+ IE KAK +GVPV+ VNPKNSS+ CP + + GR C G V
Sbjct: 298 YQSAFLGIQKAIERKAKEYGVPVIKVNPKNSSRLCPIHNAVVKYESGRFGVCSVGGEVWH 357
Query: 353 RDFIAVLNL 361
RD +AV NL
Sbjct: 358 RDILAVWNL 366
>emb|CAC11617.1| (AL445064) transposase related protein [Thermoplasma acidophilum]
Length = 350
Score = 109 bits (269), Expect = 8e-23
Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 18/222 (8%)
Query: 177 EPRDWMSIDINLT-NVTVLAGLTVYRFDT--RELYHIHRVYELKRQKIQGISAWNKRLSE 233
EP+ W+ ID N T ++ V+A + ++ HIH Y+ R+K+Q K+
Sbjct: 128 EPKKWIGIDRNATGHIAVVADPQTGKIWKLGKKAEHIHNKYKAIRKKLQ------KKKKY 181
Query: 234 KLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLNRKLS 293
KLLKK RE RD HK++ KIV IA+ GI LE LNGI+ +K L+
Sbjct: 182 KLLKKIKDRESRIVRDLNHKVSKKIVEIAQGENAGIKLEKLNGIRSNKKH-TKPFKYGLN 240
Query: 294 KWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVEDR 353
W+ +L+ I+YKAK G+P+ YV+P+ +SK C C G++ +E + +C +CG V+
Sbjct: 241 SWSFYQLEFFIQYKAKMNGIPLTYVDPRYTSKECSRC-GYIGIREDKSFECPRCGHVDHA 299
Query: 354 DFIAVLNLR-----MWGSGVTPKGLEVSRASTLNERPMKTNP 390
D A N+ M G+G + + ST + P + P
Sbjct: 300 DANASFNIAVRPPLMEGTGRLHADSDACKGST--DTPEEATP 339
>pir||H75050 hypothetical protein PAB1452 - Pyrococcus abyssi (strain Orsay)
>gi|5458814|emb|CAB50301.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 404
Score = 108 bits (268), Expect = 1e-22
Identities = 95/360 (26%), Positives = 161/360 (44%), Gaps = 46/360 (12%)
Query: 70 HYVDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLFTLKGF---------- 118
HY + + KS+ +KGK + KP +++ +++ L+ K F
Sbjct: 4 HYYYTVCQDAVTRAKSFLELKKKGKVETEKPVVKRVSLWLDDVLWDYKRFPQFNTLKNGR 63
Query: 119 -ILKITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFE 177
IL I + R+ ++++L + L E W + + ++ VL + + FE
Sbjct: 64 KILIIRLSTRKGRIKLSLKPHKLFFKYLNEGWKVKPGVKLRLIEEERKVLAYFVFEKEFE 123
Query: 178 PRD----WMSIDINLTNVTVLAGLTVYRFDTR-ELYHIHRVYELKRQKIQG--ISAWNKR 230
++ ++S+D N N+++ G + + R +L I R Y R++IQ + W ++
Sbjct: 124 EQEPTGSFLSVDYNADNISL--GTSEFLIQVRTDLGKITRFYTNVRREIQKSHLVGWRRK 181
Query: 231 L----SEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDL-----NGIKERV 281
L KLL+K+ R++NR D K A ++V +A+ I+LE++ + R
Sbjct: 182 LPSNKGRKLLEKFGRRKRNRRVDLQGKFAKRLVELAKVLNATIVLEEVPKNFNQKVARRR 241
Query: 282 LGGSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEG-- 339
K L L + QR + KA F VPVV+V+P SSK CP CG + +
Sbjct: 242 KRKEKGLRDVLHNIGMNGFQRFVLEKAVEFNVPVVFVSPSYSSKICPGCGAFNVKPDDDA 301
Query: 340 ---RLMKCLKCGLVEDRDFIAVLNLRMWGSGVTPKGLEVSRASTLNERPMKTNPYGIMAI 396
R+ C CG DRDF+AVLNL L + S P+ +P G+M +
Sbjct: 302 LRRRVFNCPVCGFSMDRDFVAVLNL-----------LGLFPFSPKANEPLAEDPVGLMML 350
>gb|AAK42165.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 382
Score = 101 bits (249), Expect = 2e-20
Identities = 102/389 (26%), Positives = 165/389 (42%), Gaps = 58/389 (14%)
Query: 8 NETVVKAYSIPIQADGIILEFIEEYHRMARVVL----QEILNAEKFTKFER--KQLRDKL 61
N+ + S+ I +L + Y + R L + + N E+ + + L +KL
Sbjct: 6 NKAIRATVSMKIALSEPLLVLVNNYVKALRFTLFWLKENVPNPEEKGVLSKVHEALYEKL 65
Query: 62 LEDWKYANHYVDSAINQMLGLVKSYRRKLRKGKKVRKPRLRKKFVYVK---STLFTLKGF 118
E++ + + + L K + R+G R PR+ + V++ S +
Sbjct: 66 REEYNLPSKVAEDCYREALATYKGWYNNPRRG---RFPRVYRPTVWLTPRASYNVDFEAM 122
Query: 119 ILKITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLN--FVKTVEYF 176
++I + E+++ YP L KE ++ L + DK L F K +
Sbjct: 123 TVRIVSVG-----ELSILGYPRNL---KEYMGWKMKEARLVIRDDKAFLKVVFEKEEQKV 174
Query: 177 EPRDWMSIDINLTNVTVLAGLTVY-RFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKL 235
EP++ +++DIN+ V V Y R TR ++ + W K L+E+L
Sbjct: 175 EPKESIAVDINMAEVVVGKDDKNYVRIPTR---------------LEEVHHW-KSLAERL 218
Query: 236 LKKYSGREKNRAR-----------------DFLHKLANKIVGIARERRMGII-LEDLNGI 277
LKKY R + R DF K+ +V +A+ + +I LE L +
Sbjct: 219 LKKYPRRWRENKRILYRVRSFHLKARRIMEDFARKVGKWVVDVAKRMGVNVIKLESLKNL 278
Query: 278 KERVLGGSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQ 337
+ V SK KL R LQ I ++AK G+ V +VNP SS +CP CG ++
Sbjct: 279 IKSVEKLSKEFRDKLYLMQYRRLQYWISWQAKKRGMTVEFVNPSYSSVSCPKCGKRMVEV 338
Query: 338 EGRLMKCLKCGLVEDRDFIAVLNLRMWGS 366
R KC CG DRD IA++NL GS
Sbjct: 339 SHRWFKC-SCGYENDRDVIAIMNLNGRGS 366
>pir||A72303 hypothetical protein TM1026 - Thermotoga maritima (strain MSB8)
>gi|4981567|gb|AAD36103.1|AE001764_6 (AE001764)
transposase, putative [Thermotoga maritima]
Length = 402
Score = 101 bits (248), Expect = 2e-20
Identities = 99/394 (25%), Positives = 174/394 (44%), Gaps = 52/394 (13%)
Query: 11 VVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQ-------LRDKLLE 63
V++ Y + I G + + EE +R+A + + ++ + K +K+ DK +
Sbjct: 5 VIRTYKLAIP--GHLNQICEELNRIAARIYNKTMSLVQ--KIHQKKGFWLSWPTADKYIL 60
Query: 64 DW----KYANHYVDSAINQMLGLVKSYRRKLRKGKKVRKPRLRKK---FVYVKSTLFTLK 116
W K H + + +K Y + +K + + P +K+ F++ +S + L
Sbjct: 61 RWAENIKIHVHSKQAFVQLYFQALKGYFKAAKKNQDAKPPYKKKRYLPFIWKESAVKLLS 120
Query: 117 GFILKITIIPREYYLEINLANYPYIL--PLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVE 174
L+ L + P+++ PL + RL +F D L+ VE
Sbjct: 121 DGTLR---------LSLGKEREPFVVQTPLKPPLRIKQARL----VFEDGYYLHLAIEVE 167
Query: 175 YFEPR---DWMSIDIN-LTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQ-------- 222
E M++D+ L +T G V + L + R + +Q
Sbjct: 168 IEEKSANSGVMAVDLGVLRPITCFDGKEVISYHGGVLSSVLRYRNKRLASLQSAIAECKK 227
Query: 223 GISAWNKRLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMG-IILEDLNGIKERV 281
G +NK + K K+ R KN+ D +HK+ + +G+ +++G I++ D+ GI+ER
Sbjct: 228 GSRRYNKLVRAK--KRVLRRLKNQINDIMHKITSSFIGLCLRKQIGTIVIGDVTGIRERA 285
Query: 282 LGGSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRL 341
S + N+K+ +W R+L +I YKA+ FG+ V ++ N+SKTCP CG P GR
Sbjct: 286 -DYSDNANQKIHQWQFRKLIEMIRYKAEQFGIEVKLISEANTSKTCPVCGAKNKP-NGRR 343
Query: 342 MKCLKCGLVEDRDFIAVLNL--RMWGSGVTPKGL 373
C CG RD + +N+ R G+G GL
Sbjct: 344 YHCKTCGFEYHRDGVGAINIWKRYPGTGQVVAGL 377
>emb|CAC11704.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 398
Score = 98.7 bits (242), Expect = 1e-19
Identities = 104/394 (26%), Positives = 181/394 (45%), Gaps = 52/394 (13%)
Query: 25 ILEFIEEYHRMARVVLQEILNAEKFTKFE----------RKQLRDKLLEDWKYANHYVDS 74
IL+++++ M ++ + ILNA + R+ L+D + YA H+++
Sbjct: 24 ILKYLKD---MRDLINRAILNAYSIARSNDDSLPSPITLRRSLKDYYDNNVAYAKHHINP 80
Query: 75 AINQMLGLVKSYRRKLRKGKKVRKPRLRKKFVYVKSTLFTLKGFILKITIIPREY-YLEI 133
+ +++SY++ + K V+ RL + + S L ++ L+ITI P Y Y++I
Sbjct: 81 VCRTAIAMLRSYKKNNGRLKVVKAKRLAMR---IDSELAKIEDNRLRITIRPNVYEYVDI 137
Query: 134 NLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFEP---RDWMSIDINLTN 190
N Y + + L +++ + F+ T +P + + D+N +
Sbjct: 138 VDRNKKYSE-------YSKYPISEVLLTDNRVYITFI-TGSDDKPVIANNIIGFDLNFKS 189
Query: 191 V--TVLAGLTVYRFDTRELYHI---HRVYELKRQKIQG-ISAWNKRLSEKLLKKYSGREK 244
V TV+ + D+ + Y I R YE KR+KIQ I KR+ + LK+ R++
Sbjct: 190 VDYTVIKDNRIAYVDSIDTYDIAKTQRDYERKRRKIQKHIRNPAKRIRK--LKEAKHRQR 247
Query: 245 NRARDFLHKLANKIVGIARERRMGIILEDLNGIKE---------RVLGGSKSLNRKLSKW 295
N RD L KL IV ++ + EDL IK+ R SK +++W
Sbjct: 248 NIVRDKLQKLTTNIVKNNEDKTF--VFEDLTNIKKKGKKHKDHKRDGQSSKRFRTDINRW 305
Query: 296 NVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVEDRDF 355
R Q +EYK+K +YV+P+ +S CP CGG L ++ KC CG DRD
Sbjct: 306 PYRLFQMFVEYKSK---NETLYVDPEGTSSECPVCGGILEHPIWKMSKCDNCGATFDRDR 362
Query: 356 IAVLNLRMWGSGVTPKGLEVSRASTLNERPMKTN 389
++ L++ + G + VS +++ + MK N
Sbjct: 363 LSSLSIAVRGLHLCGTPFSVSGSASWDS--MKDN 394
>pir||D72426 hypothetical protein TM0047 - Thermotoga maritima (strain MSB8)
>gi|4980532|gb|AAD35141.1|AE001691_15 (AE001691)
transposase, putative [Thermotoga maritima]
Length = 405
Score = 97.1 bits (238), Expect = 3e-19
Identities = 89/373 (23%), Positives = 166/373 (43%), Gaps = 34/373 (9%)
Query: 11 VVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFER-----KQLRDKLLEDW 65
V++ Y +P+ + + E +R+A + + ++ K K ++ K + W
Sbjct: 5 VIRTYKVPVPVE--LYPLCSELNRIAARIYNKTMSLVKKIKNKKGFWLSPNTAQKYILRW 62
Query: 66 KYA----NHYVDSAINQMLGLVKSYRRKLRKGKKVRKPRLRKKFVYVKSTLFTLKGFILK 121
A H + + + SY ++ + P RK F+ F K +K
Sbjct: 63 SSAIDIHTHSKQAMVQLYFQALNSYFVAVKTNPHAKPPYKRKNFLP-----FIWKNQAIK 117
Query: 122 ITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFEPRDW 181
+ + + L + P+++P + +R L + L+ V+ R
Sbjct: 118 L-LPDGKVKLSMGRNREPFVIPTTLPAGT-TIRQAKLVYEAGRYYLHLAIEVKSEHKRGQ 175
Query: 182 ----MSIDINLTN-VTVLAGLTVYRFDTREL-----YHIHRVYELKR--QKIQGISAWNK 229
MS+D+ + +T G V + L Y R+ +++R + Q S K
Sbjct: 176 SQKVMSVDVGILRPITCFDGSEVISYHGGVLNSILRYRNKRLADIQRALSRCQKGSRRYK 235
Query: 230 RLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMG-IILEDLNGIKERVLGGSKSL 288
+LS + ++ + +N+ D LHK+ + +G+ ++ +G I++ D+ I+ER G+ +
Sbjct: 236 KLS-RAKRRVLYKTRNQINDVLHKITSHFIGLCVQKNIGTIVVGDITNIRERT-NGNDNF 293
Query: 289 NRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCG 348
N+KL +W R+L IEYKA+ FG+ VV ++ ++SKTCP CG P GR KC CG
Sbjct: 294 NQKLHQWAFRKLMSQIEYKAQIFGIEVVRISEAHTSKTCPVCGTQNRP-SGRNYKCAGCG 352
Query: 349 LVEDRDFIAVLNL 361
RD + +N+
Sbjct: 353 FEYHRDGVGAINI 365
>pir||A72332 hypothetical protein TM0776 - Thermotoga maritima (strain MSB8)
>gi|4981305|gb|AAD35858.1|AE001747_1 (AE001747)
transposase, putative [Thermotoga maritima]
Length = 402
Score = 96.3 bits (236), Expect = 6e-19
Identities = 95/392 (24%), Positives = 169/392 (42%), Gaps = 48/392 (12%)
Query: 11 VVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQ-------LRDKLLE 63
V++ Y + + G + + EE +R A + + ++ + K +K+ DK +
Sbjct: 5 VIRTYKLAVP--GHLSQTCEELNRTAARIYNKTMSLVR--KIHQKKGFWLSWPTADKYIL 60
Query: 64 DW----KYANHYVDSAINQMLGLVKSYRRKLRKGKKVRKPRLRKK---FVYVKSTLFTLK 116
W K H + + +K Y + +K + P +K+ F++ +S + L
Sbjct: 61 RWAENIKIHVHSKQAFVQLYFQALKGYFKATKKNPDAKPPHKKKRYLPFIWKESAVKLLP 120
Query: 117 GFILKITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYF 176
L++++ + PL + RL +F D L+ VE
Sbjct: 121 DGTLRLSLGKERESFVVQT-------PLKPPLRIKQTRL----VFEDGYYLHLAIEVEIE 169
Query: 177 EPRDW---MSIDIN-LTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQ--------GI 224
E M++D+ L +T G V + L + R + Q G
Sbjct: 170 EKNAGSGVMAVDLGVLRPITCFDGKEVISYHGGVLSSVLRYRNKRLASFQSAIAECKKGS 229
Query: 225 SAWNKRLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMG-IILEDLNGIKERVLG 283
+NK + K K+ R +N+ D +HK+ + +G+ +++G I++ D+ GI+ER
Sbjct: 230 RRYNKLVRAK--KRVLRRLRNQINDIMHKITSNFIGLCLRKQIGTIVIGDVTGIRERA-D 286
Query: 284 GSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMK 343
S + N+K+ +W R+L +I YKA+ FG+ V ++ N+SKTCP CG P GR
Sbjct: 287 YSDNANQKIHQWQFRKLIEMIRYKAEQFGIEVKLISEANTSKTCPVCGAKNNP-NGRRYH 345
Query: 344 CLKCGLVEDRDFIAVLNL--RMWGSGVTPKGL 373
C CG RD + +N+ R G+G GL
Sbjct: 346 CKACGFEYHRDGVGAINIWKRYPGTGQVVAGL 377
>pir||C72205 hypothetical protein TM1831 - Thermotoga maritima (strain MSB8)
>gi|4982414|gb|AAD36894.1|AE001820_3 (AE001820)
transposase, putative [Thermotoga maritima]
Length = 402
Score = 95.2 bits (233), Expect = 1e-18
Identities = 98/394 (24%), Positives = 170/394 (42%), Gaps = 52/394 (13%)
Query: 11 VVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQ-------LRDKLLE 63
V++ Y + + G + + EE +R A + + ++ + K +K+ DK +
Sbjct: 5 VIRTYKLAVP--GHLSQTCEELNRTAARIYNKTMSLVR--KIHQKKGFWLSWPTADKYIL 60
Query: 64 DW----KYANHYVDSAINQMLGLVKSYRRKLRKGKKVRKPRLRKK---FVYVKSTLFTLK 116
W K H + + +K Y + +K + P +K+ F++ +S + L
Sbjct: 61 RWAENIKIHVHSKQAFVQLYFQALKGYFKATKKNPDAKPPYKKKRYLPFIWKESAVKLLP 120
Query: 117 GFILKITIIPREYYLEINLANYPYIL--PLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVE 174
L+ L + P+++ PL + RL +F D L+ VE
Sbjct: 121 DGTLR---------LSLGKEREPFVVQTPLKPPLRIKQTRL----VFEDGYYLHLAIEVE 167
Query: 175 YFEPR---DWMSIDIN-LTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQ-------- 222
E M++D L +T G V + L I R + Q
Sbjct: 168 IEEKSANSGVMAVDPGVLRPITCFDGKEVISYHGGVLSSILRYRNKRLASFQSAIAECKK 227
Query: 223 GISAWNKRLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMG-IILEDLNGIKERV 281
G +NK + K K+ R +N+ D +HK+ + +G+ +++G I++ D+ GI+ER
Sbjct: 228 GSRRYNKLVRAK--KRVLRRLRNQINDIMHKITSSFIGLCLRKQIGTIVIGDVTGIRERA 285
Query: 282 LGGSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRL 341
S + N+K+ +W R+L +I YKA+ FG+ V ++ N+SKTCP CG P GR
Sbjct: 286 -DYSDNANQKIHQWQFRKLIEMIRYKAEQFGIEVELISEANTSKTCPVCGAKNKP-NGRR 343
Query: 342 MKCLKCGLVEDRDFIAVLNL--RMWGSGVTPKGL 373
C CG RD + +N+ R G+G GL
Sbjct: 344 YHCKTCGFEYHRDGVGAINIWKRYPGTGQVVAGL 377
>pir||C72226 hypothetical protein TM1677 - Thermotoga maritima (strain MSB8)
>gi|4982252|gb|AAD36744.1|AE001808_19 (AE001808)
transposase, putative [Thermotoga maritima]
Length = 402
Score = 93.6 bits (229), Expect = 4e-18
Identities = 93/394 (23%), Positives = 173/394 (43%), Gaps = 52/394 (13%)
Query: 11 VVKAYSIPIQADGIILEFIEEYHRMARVVLQEILNAEKFTKFERKQ-------LRDKLLE 63
V++ Y + + G + + EE +R A + + ++ + K RK+ DK +
Sbjct: 5 VIRTYKLAVP--GHLSQTCEELNRTAARIYNKTMSIVR--KIHRKKGFWLSWPTADKYIL 60
Query: 64 DW----KYANHYVDSAINQMLGLVKSYRRKLRKGKKVRKPRLRKK---FVYVKSTLFTLK 116
W K H + + +K Y + +K + + P +K+ F++ +S + L
Sbjct: 61 RWAENIKIHVHSKQAFVQLYFQALKGYFKAAKKNQDAKPPHKKKRYLPFIWKESAVKLLP 120
Query: 117 GFILKITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYF 176
L++++ + PL + RL +F D L+ VE
Sbjct: 121 DGTLRLSLGKERESFVVQT-------PLKPPLRIKQTRL----VFEDGYYLHLAIEVEIE 169
Query: 177 EPRDWMSIDINLTNVTVLAGLTVYRFDTREL--YHIHRVYELKRQKIQGISAWNKRLSE- 233
E + ++ VL +T FD +E+ YH + R + + ++++ ++E
Sbjct: 170 EKN--AGSGVMAADLGVLRPITC--FDGKEVISYHGGVLSSTLRYRNKRLASFQSAIAEC 225
Query: 234 -----------KLLKKYSGREKNRARDFLHKLANKIVGIA-RERRMGIILEDLNGIKERV 281
+ K+ R +N+ D +HK+ + +G+ R++ I++ D+ GI+ER
Sbjct: 226 KKGSRRYNKLVRAKKRVLRRLRNQINDIMHKITSSFIGLCLRKQIRTIVIGDVTGIRERA 285
Query: 282 LGGSKSLNRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRL 341
S + N+K+ +W R+L +I YKA+ FG+ V ++ N+SKTCP CG P GR
Sbjct: 286 -DYSDNANQKIHQWQFRKLIEMIRYKAEQFGIEVKLISEANTSKTCPVCGAKNNP-NGRR 343
Query: 342 MKCLKCGLVEDRDFIAVLNL--RMWGSGVTPKGL 373
C CG RD + +N+ R G+G GL
Sbjct: 344 YHCKACGFEYHRDGVGAINIWKRYPGTGQVVAGL 377
>sp|Q60328|Y012_METJA HYPOTHETICAL PROTEIN MJ0012 >gi|2128079|pir||D64301 hypothetical
protein MJ0012 - Methanococcus jannaschii
Length = 208
Score = 87.0 bits (212), Expect = 4e-16
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 20/150 (13%)
Query: 236 LKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLNRKLSKW 295
+KKY R KNR DF++KL +++ + + I EDL+ K + + + NR L +
Sbjct: 1 MKKYWNRRKNRVEDFINKLTSQLSKLFPDAIF--IFEDLD--KFNMYDKNSNFNRNLDRT 56
Query: 296 NVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVEDRDF 355
N R++ + +EYK+ V+YVNP +SKTCP CG + QEG+++KC KCG+ DR F
Sbjct: 57 NWRKIAKKLEYKSV-----VLYVNPHYTSKTCPVCGSKMKSQEGQVVKCDKCGIF-DRQF 110
Query: 356 IAVLNL----------RMWGSGVTPKGLEV 375
+ N+ + G GV G EV
Sbjct: 111 VRCYNIFKRGVELAKKLLGGVGVPVAGAEV 140
>gb|AAK41095.1| Orf in partial transposon ISC1913 [Sulfolobus solfataricus]
Length = 371
Score = 85.4 bits (208), Expect = 1e-15
Identities = 91/360 (25%), Positives = 160/360 (44%), Gaps = 43/360 (11%)
Query: 37 RVVLQEILN------AEKFTKFERKQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKL 90
R +L+E +N FT+ + + + + +HY+ +A + S+ +
Sbjct: 10 REILEEAINYGLTKNTTSFTRIKAGIYKTEREKHRDLPSHYIYTACEDASERLDSFNKLK 69
Query: 91 RKGKKVR-KPRLRKKFVYVKSTLF----------TLKGFILKITIIPREYYLEINLANYP 139
++G+ +P +R+ V++ L+ T +G + I P+ ++ N N+
Sbjct: 70 KRGRSYTDRPSVRRVTVHLDDHLWKFSLNVISIATKRGRVCISPIFPKIFWRYYN-DNWL 128
Query: 140 YILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFEPRDWMSIDINLTNVTVLAGLTV 199
++ GN+ + + F K V+ ++PR ++ +D+N +V+VL
Sbjct: 129 IASGARFKLLKGNVV---------EFFIVFKKDVKSYDPRGFIPVDLNEDSVSVLINGKP 179
Query: 200 YRFDTRELYHIHRVYELKRQKI-QGISAWNKRLSEKLLKKYSGREKNRARDFLHKLANKI 258
+T I YE KR+ I G S ++ + KL RE+++ D K A I
Sbjct: 180 ILLETNTRM-ITLGYEYKRRSITNGRSTKDREVRRKL------RERDKKLDVRRKFAKLI 232
Query: 259 VGIARERRMGIILEDL-NGIKERVLGG--SKSLNRKLSKWNVRELQRLIEYKAKWFGVPV 315
V A R I+LEDL G+ E ++ G K L ++ + ++ I KA+ FGVPV
Sbjct: 233 VKEAFGSRSAIVLEDLPRGVPEHMVKGVKDKQLRLRIYRSAFSSMKNAIVEKAREFGVPV 292
Query: 316 VYVNPKNSSKTCPACGGHLIPQEG-----RLMKCLKCGLVEDRDFIAVLNLRMWGSGVTP 370
+ V+P +S CP G +I Q R+ C K G RD +A+ NLR V+P
Sbjct: 293 ILVDPSYTSSICPVHGSKIIYQPDGGSAPRVGVCGKGGERWHRDVVALYNLRKRAGDVSP 352
>emb|CAB57506.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 371
Score = 85.4 bits (208), Expect = 1e-15
Identities = 91/360 (25%), Positives = 160/360 (44%), Gaps = 43/360 (11%)
Query: 37 RVVLQEILN------AEKFTKFERKQLRDKLLEDWKYANHYVDSAINQMLGLVKSYRRKL 90
R +L+E +N FT+ + + + + +HY+ +A + S+ +
Sbjct: 10 REILEEAINYGLTKNTTSFTRIKAGIYKTEREKHRDLPSHYIYTACEDASERLDSFNKLK 69
Query: 91 RKGKKVR-KPRLRKKFVYVKSTLF----------TLKGFILKITIIPREYYLEINLANYP 139
++G+ +P +R+ V++ L+ T +G + I P+ ++ N N+
Sbjct: 70 KRGRSYTDRPSVRRVTVHLDDHLWKFSLNVISIATKRGRVCISPIFPKIFWRYYN-DNWL 128
Query: 140 YILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFEPRDWMSIDINLTNVTVLAGLTV 199
++ GN+ + + F K V+ ++PR ++ +D+N +V+VL
Sbjct: 129 IASGARFKLLKGNVV---------EFFIVFKKDVKSYDPRGFIPVDLNEDSVSVLINGKP 179
Query: 200 YRFDTRELYHIHRVYELKRQKI-QGISAWNKRLSEKLLKKYSGREKNRARDFLHKLANKI 258
+T I YE KR+ I G S ++ + KL RE+++ D K A I
Sbjct: 180 ILLETNTRM-ITLGYEYKRRSITNGRSTKDREVRRKL------RERDKKLDVRRKFAKLI 232
Query: 259 VGIARERRMGIILEDL-NGIKERVLGG--SKSLNRKLSKWNVRELQRLIEYKAKWFGVPV 315
V A R I+LEDL G+ E ++ G K L ++ + ++ I KA+ FGVPV
Sbjct: 233 VKEAFGSRSAIVLEDLPRGVPEHMVKGVKDKQLRLRIYRSAFSSMKNAIVEKAREFGVPV 292
Query: 316 VYVNPKNSSKTCPACGGHLIPQEG-----RLMKCLKCGLVEDRDFIAVLNLRMWGSGVTP 370
+ V+P +S CP G +I Q R+ C K G RD +A+ NLR V+P
Sbjct: 293 ILVDPSYTSSICPVHGSKIIYQPDGGSAPRVGVCGKGGERWHRDVVALYNLRKRAGDVSP 352
>gb|AAK41583.1| Third ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 183
Score = 80.0 bits (194), Expect = 5e-14
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 15/186 (8%)
Query: 230 RLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVL-GGSKSL 288
R +L++KYS RE+NR DF+HK N ++ + + E LN KE + + SL
Sbjct: 6 RRGRELMRKYSHRERNRVLDFVHKFVNTLLDLYPMTFFAV--EKLN--KESMFKDANDSL 61
Query: 289 NRKLSKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCG 348
+RK+S+ R + R+++YKA +G V VNP +S++CP C + + G+ +C +CG
Sbjct: 62 SRKISRTVWRSIHRVLKYKAPLYGSFVKEVNPYLTSRSCPRC-RFVSRKVGKTFECERCG 120
Query: 349 LVEDRDFIAVLNLRMWGSGVTPKGLEVSRA-----STLNERPMKTNPYGIMAIEEKQRIG 403
DR A LN+ + G P E++R + R M +G + R+
Sbjct: 121 FKLDRQLNASLNIYLKMCGF-PHIREIARVWVGVIPLMGRRRMNVRDFG---EAQGLRVD 176
Query: 404 LKFHKI 409
+K+H+I
Sbjct: 177 IKYHEI 182
>gb|AAK41584.1| Second ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 239
Score = 80.0 bits (194), Expect = 5e-14
Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 25/217 (11%)
Query: 27 EFIEEYHRMARVVLQEILNAEKFTKFER---------------KQLRDKLLEDWKYANHY 71
E I+EY + + + + N K ++ K LR++L + A+HY
Sbjct: 17 ELIKEYRTLLQKAIDYLWNLTKIQVRKKNGNYKITLPKKKEVYKPLREELEKINHLASHY 76
Query: 72 VDSAINQMLGLVKSYRRKLRKGK-KVRKPRLRKKFVYVKSTLFTLKGFILKITIIPREYY 130
VD AIN ++KS+R++ KG+ + KPR++K +V +K+TL + G ++IT+ P EY
Sbjct: 77 VDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPHEY- 135
Query: 131 LEINLA-NYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYFEPRDWMSIDINLT 189
I + + + +KE L LG + +K+ L F + + P ++++ID NL
Sbjct: 136 --ITFSWSKSWFSRRVKE-----LELGEPIIKEEKVYLPFRYKLPWVTPVNFLAIDSNLY 188
Query: 190 NVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISA 226
+ G ++LY + E+KR K+Q ++
Sbjct: 189 TLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS 225
>gb|AAK42109.1| Second ORF in transposon ISC1913 [Sulfolobus solfataricus]
Length = 408
Score = 79.6 bits (193), Expect = 6e-14
Identities = 95/384 (24%), Positives = 164/384 (41%), Gaps = 39/384 (10%)
Query: 13 KAYSIPIQADGIILEFIEEYHRMARVVLQEILN---AEKFTKFERKQLRDKLLEDWKYAN 69
+ + ++ D ++E + R VL+E +N + K T F R + E K+ +
Sbjct: 3 RTVKLRVKVDYKTYSALKEVEKEYREVLEEAINYGLSNKTTSFTRIKAGVYKTEREKHKD 62
Query: 70 ---HYVDSAINQMLGLVKSYRRKLRKGKK-VRKPRLRKKFVYVKSTLFTLKGFILKITII 125
HY+ +A + S+ + R+G+ KP +R+ +++ L+ + +I+I
Sbjct: 63 LPSHYIYTACEDASERLDSFEKLKRRGRSYTEKPSVRRVTIHLDDHLWKFN--LDRISIS 120
Query: 126 PREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEYF--------- 176
+ + I+ P +++ G + L VE++
Sbjct: 121 TKRSRILIS--------PTFPKIFWRYYNKGWRIASEARFKLLKGNVVEFYVIFKRDEPK 172
Query: 177 --EPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEK 234
EP+ ++S+D+N +V+VL +T I YE +R+ I + R +
Sbjct: 173 PYEPKGFISVDLNENSVSVLVDGKPMLLETNTK-RITLGYEYRRKAITTGKSTKDREVRR 231
Query: 235 LLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDL-NGIKERVLGGSKSLNRKLS 293
LK+ RE+N+ D KLA IV A E R I+LEDL E ++ K +L
Sbjct: 232 KLKRL--RERNKKVDIRRKLAKLIVKEAFESRSVIVLEDLPRRTPEHMIKDVKDSQLRLR 289
Query: 294 KWNVR--ELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQ-----EGRLMKCLK 346
+ ++ I KA+ FGVPVV VNP ++S CP G ++ Q R+ C K
Sbjct: 290 IYRAAFSSMKNAIIEKAREFGVPVVLVNPSHTSTVCPVHGTKIVYQLDGGDAPRVGVCEK 349
Query: 347 CGLVEDRDFIAVLNLRMWGSGVTP 370
RD +A+ NL V+P
Sbjct: 350 GKEKWHRDVVALYNLARRAGDVSP 373
>pir||E72413 hypothetical protein TM0135 - Thermotoga maritima (strain MSB8)
>gi|4980627|gb|AAD35228.1|AE001699_5 (AE001699)
transposase, putative [Thermotoga maritima]
Length = 410
Score = 77.6 bits (188), Expect = 2e-13
Identities = 56/203 (27%), Positives = 96/203 (46%), Gaps = 19/203 (9%)
Query: 173 VEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAW----N 228
V+ +P++ + +D+ ++ +A TR L + ++ ++Q Q + +
Sbjct: 187 VQEHQPKEIVGVDVGERHIAAVASTK----GTRYLIDLPEEFKQRKQHYQRLRSELMSKG 242
Query: 229 KRLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVL---GGS 285
R +++ L + S REK + LH +A K+ R +LEDL I+ + G
Sbjct: 243 TRSAKRKLARISRREKRFTENVLHIIAKKLTTSHPGARF--VLEDLTQIRANRITYRGKD 300
Query: 286 KSLNRKLSKWNVRELQRLIEYKAK-WFGVPVVYVNPKNSSKTCPACGGHLI----PQEGR 340
K R+ +W LQ+ IEYKAK ++GV V+P +S+TCP C GH+ P G
Sbjct: 301 KEARRQSEQWPFASLQQKIEYKAKLYYGVQSEKVDPSYTSQTCPRC-GHVSKENRPDHGE 359
Query: 341 LMKCLKCGLVEDRDFIAVLNLRM 363
C CG E D + +N+ +
Sbjct: 360 RFVCQSCGYEEHADIVGAINIAL 382
>pir||E72307 transposase-related protein - Thermotoga maritima (strain MSB8)
>gi|4981547|gb|AAD36085.1|AE001762_12 (AE001762)
transposase-related protein [Thermotoga maritima]
Length = 278
Score = 76.9 bits (186), Expect = 4e-13
Identities = 55/203 (27%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 173 VEYFEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAW----N 228
V+ +P++ + +D+ ++ TR L + ++ ++Q Q + +
Sbjct: 55 VQEHQPKEILGVDVGERHIAAATSTK----GTRYLIDLPEEFKQRKQHYQRLRSELMSKG 110
Query: 229 KRLSEKLLKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVL---GGS 285
R +++ L + S REK + LH +A K++ R +LEDL I+ + G
Sbjct: 111 TRSAKRKLARISRREKRFTENVLHIIAKKLITSHPGARF--VLEDLTQIRANRITYRGKD 168
Query: 286 KSLNRKLSKWNVRELQRLIEYKAK-WFGVPVVYVNPKNSSKTCPACGGHLI----PQEGR 340
K R+ +W LQ+ IEYKAK ++GV V+P +S+TCP C GH+ P G
Sbjct: 169 KEARRQSEQWPFASLQQKIEYKAKLYYGVQSEKVDPSYTSQTCPRC-GHVSKENRPDHGE 227
Query: 341 LMKCLKCGLVEDRDFIAVLNLRM 363
C CG E D + +N+ +
Sbjct: 228 RFVCQNCGYEEHADIVGAINIAL 250
>gb|AAK42158.1| Third ORF in transposon ISC1913 [Sulfolobus solfataricus]
Length = 410
Score = 76.1 bits (184), Expect = 7e-13
Identities = 92/383 (24%), Positives = 163/383 (42%), Gaps = 37/383 (9%)
Query: 13 KAYSIPIQADGIILEFIEEYHRMARVVLQEILN---AEKFTKFERKQLRDKLLEDWKYAN 69
+ + ++ D ++E + R VL++ +N + K T F R + E K+ +
Sbjct: 3 RTVKLRVKVDYSTYSALKEVEKEYREVLEDAINYGLSNKTTSFTRIKAGVYKTEREKHKD 62
Query: 70 ---HYVDSAINQMLGLVKSYRRKLRKGKK-VRKPRLRKKFVYVKSTLF----------TL 115
HY+ +A + S+ + ++G+ KP +R+ +++ L+ T
Sbjct: 63 LPSHYIYTACEDASERLDSFEKLKKRGRSYTEKPSVRRVTIHLDDHLWKFNLDTISISTK 122
Query: 116 KGFILKITIIPREYYLEINLANYPYILPLLKEVWSGNLRLGGLFLFPDKLVLNFVKTVEY 175
+ IL P+ ++ N + + GN+ + D+ +
Sbjct: 123 RSRILISPTFPKIFWRYYN-TEWRIASEARFRLMKGNVVEFYVIFKRDE--------PKP 173
Query: 176 FEPRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKL 235
+EP+ ++ +D+N +V+VL +T I YE +R+ I + R +
Sbjct: 174 YEPKAFIPVDLNENSVSVLINSKPLLLETNTK-KITLGYEYRRKAITTGKSTKDREVRRK 232
Query: 236 LKKYSGREKNRARDFLHKLANKIVGIARERRMGIILEDL-NGIKERVLGG--SKSLNRKL 292
LK+ RE+N+ D KLA IV A E R I+LEDL E ++ K L ++
Sbjct: 233 LKRL--RERNKKVDIRRKLAKLIVKEAFESRSAIVLEDLPRRTPEHMIKDVKDKQLRLRI 290
Query: 293 SKWNVRELQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQ-----EGRLMKCLKC 347
+ ++ I KA+ FGVPVV VNP +S CP G +++ Q R+ C K
Sbjct: 291 YRSAFSSMKNAIIEKAREFGVPVVLVNPSYTSTVCPIHGANIVYQLDGGDAPRVGVCEKG 350
Query: 348 GLVEDRDFIAVLNLRMWGSGVTP 370
RD +A+ NL V+P
Sbjct: 351 KEKWHRDVVALYNLARRAGDVSP 373
>gb|AAG18666.1| (AE004971) Vng0026c [Halobacterium sp. NRC-1]
Length = 307
Score = 74.5 bits (180), Expect = 2e-12
Identities = 61/185 (32%), Positives = 85/185 (44%), Gaps = 18/185 (9%)
Query: 182 MSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLKKYSG 241
+ +D+ + N+ V + T Y F REL H R +E R G+ R + + L++ SG
Sbjct: 79 LGVDLGIENLAVTS--TAYFFSGRELAHDLREFEKVRA---GLQQTGTRSAHRTLEQSSG 133
Query: 242 REKNRARDFLHKLANKIVGIARERRMGII-LEDLNGIKERVLGGSKSLNRKLSKWNVREL 300
RE RD LH+ +N IV A II EDL I+ER G S KW R L
Sbjct: 134 RELRYVRDVLHQASNAIVDEALRYECDIIAFEDLTHIRERT-GASWG-----HKWAFRTL 187
Query: 301 QRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRL----MKCLKCGLVEDRDFI 356
+ YKA+ G+ V V +S+ C CG E R +C KCG + D+
Sbjct: 188 YEQVAYKAEAEGISVKQVGSAYTSQRCAECG--FTADENRPTRNDFQCGKCGAEANADYN 245
Query: 357 AVLNL 361
A N+
Sbjct: 246 AAKNI 250
>pir||T36152 probable transposase - Streptomyces coelicolor
>gi|5531378|emb|CAB51010.1| (AL096852) putative
transposase [Streptomyces coelicolor A3(2)]
Length = 349
Score = 73.4 bits (177), Expect = 5e-12
Identities = 51/179 (28%), Positives = 86/179 (47%), Gaps = 8/179 (4%)
Query: 178 PRDWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLK 237
P ++ +D+ + N+ + + +R+ ++R + KR + + + ++LK
Sbjct: 151 PDGFLGVDLGIVNIATTSDGRI--MSSRQ---VNRYRQRKRDLRGKLQKKRTKSAARVLK 205
Query: 238 KYSGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLNRKLSKWNV 297
+ +E A H +A K+V A GI LEDL GI++RV + +L W
Sbjct: 206 RQRRKEARYATQRNHIIARKLVHTAERTSRGIGLEDLTGIRQRVTA-REDQRARLHSWAF 264
Query: 298 RELQRLIEYKAKWFGVPVVYVNPKNSSKTCPAC-GGHLIPQEGRL-MKCLKCGLVEDRD 354
+L +EYKAK GV VV+V+P+N+S+ C C H + R C CG+V D
Sbjct: 265 AQLGAFVEYKAKRAGVAVVHVDPRNTSRQCSECWHTHRTNRVTRARFVCRSCGIVLHAD 323
>gb|AAG18873.1| (AE004990) Vng0286c [Halobacterium sp. NRC-1]
Length = 384
Score = 72.6 bits (175), Expect = 8e-12
Identities = 59/199 (29%), Positives = 92/199 (45%), Gaps = 2/199 (1%)
Query: 180 DWMSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLKKY 239
D ++ID+ V A L+ R T + R+ E +Q + I R ++++++
Sbjct: 153 DVLAIDMGARWVATCAFLSD-RTTTFYGEEVRRIREHYKQLRKSIGKAKPRQGQQVVERI 211
Query: 240 SGREKNRARDFLHKLANKIVGIARERRMGIILEDLNGIKERVLGGSKSLNRKLSKWNVRE 299
E + D LHK+A +IV A ER I++ DL GI++ G + +N K K
Sbjct: 212 GDAEARKVDDRLHKIARQIVEDAEERNAVIVVGDLGGIRKDNDKG-RYVNDKTHKMPFAR 270
Query: 300 LQRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRLMKCLKCGLVEDRDFIAVL 359
L IEYKA G+ V VN ++SKTC C + +C +CGL ++ D L
Sbjct: 271 LLNCIEYKAHDAGIDVQLVNEYDTSKTCNRCACEGVRATQGRFECPECGLDDNADKNGAL 330
Query: 360 NLRMWGSGVTPKGLEVSRA 378
N+ G K L + A
Sbjct: 331 NIGKRALGKFSKPLSEAGA 349
>gb|AAG18653.1| (AE004970) Vng0013c [Halobacterium sp. NRC-1]
Length = 378
Score = 69.1 bits (166), Expect = 9e-11
Identities = 57/185 (30%), Positives = 79/185 (41%), Gaps = 18/185 (9%)
Query: 182 MSIDINLTNVTVLAGLTVYRFDTRELYHIHRVYELKRQKIQGISAWNKRLSEKLLKKYSG 241
+ +D+ + N+ V + T REL H R +E R G+ R + + L + SG
Sbjct: 150 LGVDLGIENLAVTSTATF--LSGRELTHDLREFEKVRA---GLQQTGTRSAHRTLVQSSG 204
Query: 242 REKNRARDFLHKLANKIVGIARERRMGII-LEDLNGIKERVLGGSKSLNRKLSKWNVREL 300
RE RD LH+ +N IV A +I EDL I+ R KW R L
Sbjct: 205 RELRYVRDVLHRASNAIVAEALRYNCDVIAFEDLTHIRNRTRASWGH------KWAFRTL 258
Query: 301 QRLIEYKAKWFGVPVVYVNPKNSSKTCPACGGHLIPQEGRL----MKCLKCGLVEDRDFI 356
+ YKA+ GV V V +SK C CG E R +C KCG + D+
Sbjct: 259 YEQVAYKAEAIGVSVTQVGAAYTSKRCAECG--FTADENRPTRNDFQCGKCGAEANADYN 316
Query: 357 AVLNL 361
A N+
Sbjct: 317 AAKNI 321
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.414
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153727765
Number of Sequences: 2977
Number of extensions: 6448551
Number of successful extensions: 16105
Number of sequences better than 1.0e-10: 37
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 16002
Number of HSP's gapped (non-prelim): 38
length of query: 414
length of database: 189,106,746
effective HSP length: 55
effective length of query: 359
effective length of database: 156,189,961
effective search space: 56072195999
effective search space used: 56072195999
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)