BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1803 (PAB1803) DE:Hypothetical protein
         (99 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75129 hypothetical protein PAB1803 - Pyrococcus abyssi (st...   200  3e-51
pir||A71002 hypothetical protein PHS038 - Pyrococcus horikoshii ...   105  1e-22
sp|Q57721|Y273_METJA HYPOTHETICAL PROTEIN MJ0273 >gi|2128208|pir...   101  2e-21
emb|CAC11449.1| (AL445063) conserved hypothetical protein [Therm...    91  3e-18
gb|AAF91261.1|AF230199_3 (AF230199) hypothetical protein [Methan...    90  4e-18

>pir||D75129 hypothetical protein PAB1803 - Pyrococcus abyssi (strain Orsay)
          >gi|5458260|emb|CAB49749.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 99
          
 Score =  200 bits (504), Expect = 3e-51
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MKGEVINTISKEKIEKYLNITKEALERIEVAVDERSHLYIVAKDFLTMARSYFEDAKYYY 60
          MKGEVINTISKEKIEKYLNITKEALERIEVAVDERSHLYIVAKDFLTMARSYFEDAKYYY
Sbjct: 1  MKGEVINTISKEKIEKYLNITKEALERIEVAVDERSHLYIVAKDFLTMARSYFEDAKYYY 60

Query: 61 EKGDYVTAFAAINYAHGFIDAGVRLGVFKGENSKIFAFG 99
          EKGDYVTAFAAINYAHGFIDAGVRLGVFKGENSKIFAFG
Sbjct: 61 EKGDYVTAFAAINYAHGFIDAGVRLGVFKGENSKIFAFG 99


>pir||A71002 hypothetical protein PHS038 - Pyrococcus horikoshii
          >gi|3257734|dbj|BAA30417.1| (AP000006) 52aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 52
          
 Score =  105 bits (260), Expect = 1e-22
 Identities = 47/52 (90%), Positives = 52/52 (99%)

Query: 48 MARSYFEDAKYYYEKGDYVTAFAAINYAHGFIDAGVRLGVFKGENSKIFAFG 99
          MARSYFEDAKYYY+KGDYVTAFAAINYAHGFIDAGVRLGVFKGEN++++AFG
Sbjct: 1  MARSYFEDAKYYYKKGDYVTAFAAINYAHGFIDAGVRLGVFKGENNRLYAFG 52


>sp|Q57721|Y273_METJA HYPOTHETICAL PROTEIN MJ0273 >gi|2128208|pir||B64334 hypothetical
          protein MJ0273 - Methanococcus jannaschii
          >gi|1590998|gb|AAB98261.1| (U67482) M. jannaschii
          predicted coding region MJ0273 [Methanococcus
          jannaschii]
          Length = 103
          
 Score =  101 bits (250), Expect = 2e-21
 Identities = 52/89 (58%), Positives = 68/89 (75%), Gaps = 1/89 (1%)

Query: 1  MKGEVINTISKEKIEKYLNITKEALERIEVAVD-ERSHLYIVAKDFLTMARSYFEDAKYY 59
          M   VI  I++EK+E Y   T+EA++ I+  +  +RS LY VAKDFL M  SYFEDAK +
Sbjct: 2  MVRNVIKEITEEKLENYFKRTEEAIKIIKKGMPPKRSLLYDVAKDFLLMIESYFEDAKAF 61

Query: 60 YEKGDYVTAFAAINYAHGFIDAGVRLGVF 88
           E+GDYVTAFA++NYA+G+IDAGVRLG+F
Sbjct: 62 KERGDYVTAFASLNYAYGWIDAGVRLGIF 90


>emb|CAC11449.1| (AL445063) conserved hypothetical protein [Thermoplasma
          acidophilum]
          Length = 97
          
 Score = 90.9 bits (222), Expect = 3e-18
 Identities = 41/78 (52%), Positives = 60/78 (76%)

Query: 13 KIEKYLNITKEALERIEVAVDERSHLYIVAKDFLTMARSYFEDAKYYYEKGDYVTAFAAI 72
          KIE+Y +I +EAL++I ++  E S L  +A+D + M  SY+ DAK++Y KGD + AFAA+
Sbjct: 9  KIERYFSIEEEALKKIRISPAEGSFLRKIAEDNMQMILSYYSDAKHFYAKGDLINAFAAL 68

Query: 73 NYAHGFIDAGVRLGVFKG 90
          NY++G+IDAGVRLG+F G
Sbjct: 69 NYSYGWIDAGVRLGIFDG 86


>gb|AAF91261.1|AF230199_3 (AF230199) hypothetical protein [Methanococcus maripaludis]
          Length = 101
          
 Score = 90.5 bits (221), Expect = 4e-18
 Identities = 46/86 (53%), Positives = 61/86 (70%), Gaps = 1/86 (1%)

Query: 4  EVINTISKEKIEKYLNITKEALERIEVAVD-ERSHLYIVAKDFLTMARSYFEDAKYYYEK 62
          E+ N I+ +KIE Y   TKEA+  I+  +  E+S L  VA DFL M   YFEDAK + +K
Sbjct: 3  EIDNIITDKKIENYFERTKEAITIIKNGLPPEKSLLSDVASDFLVMIDCYFEDAKTFIDK 62

Query: 63 GDYVTAFAAINYAHGFIDAGVRLGVF 88
          GDY+ AFA++NYA+G+IDAG RLG+F
Sbjct: 63 GDYINAFASLNYAYGWIDAGARLGIF 88


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.139    0.384 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33554791
Number of Sequences: 2977
Number of extensions: 1211549
Number of successful extensions: 4656
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4649
Number of HSP's gapped (non-prelim): 5
length of query: 99
length of database: 189,106,746
effective HSP length: 53
effective length of query: 46
effective length of database: 157,386,935
effective search space: 7239799010
effective search space used: 7239799010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 159 (66.3 bits)