BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1804 (PAB1804) DE:Hypothetical protein
(132 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75129 hypothetical protein PAB1804 - Pyrococcus abyssi (st... 261 3e-69
pir||B71002 hypothetical protein PH1312 - Pyrococcus horikoshii ... 195 2e-49
gb|AAG19321.1| (AE005027) Vng0879c [Halobacterium sp. NRC-1] 107 6e-23
gb|AAF91260.1|AF230199_2 (AF230199) conserved hypothetical prote... 105 2e-22
sp|Q60372|Y068_METJA HYPOTHETICAL PROTEIN MJ0068 >gi|2128109|pir... 103 7e-22
gi|11497898 conserved hypothetical protein [Archaeoglobus fulgid... 98 4e-20
gb|AAG19621.1| (AE005051) Vng1264c [Halobacterium sp. NRC-1] 87 8e-17
>pir||C75129 hypothetical protein PAB1804 - Pyrococcus abyssi (strain Orsay)
>gi|5458259|emb|CAB49748.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 132
Score = 261 bits (659), Expect = 3e-69
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFE 60
MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFE
Sbjct: 1 MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFE 60
Query: 61 SAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIRELHDGREEN 120
SAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIRELHDGREEN
Sbjct: 61 SAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIRELHDGREEN 120
Query: 121 NGIEAGENETNA 132
NGIEAGENETNA
Sbjct: 121 NGIEAGENETNA 132
>pir||B71002 hypothetical protein PH1312 - Pyrococcus horikoshii
>gi|3257735|dbj|BAA30418.1| (AP000006) 104aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 104
Score = 195 bits (490), Expect = 2e-49
Identities = 98/102 (96%), Positives = 101/102 (98%)
Query: 1 MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFE 60
MGDYIVVLEAPIIVKDVESVEEAIEAAVNKV+ ALEKEKLDFVRVELGYSKCPVCGAHFE
Sbjct: 1 MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVVNALEKEKLDFVRVELGYSKCPVCGAHFE 60
Query: 61 SAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKK 102
SAFVVGN+GLVGIYLTLKVFNAQSLEHAERIAKAVVG+ALKK
Sbjct: 61 SAFVVGNVGLVGIYLTLKVFNAQSLEHAERIAKAVVGRALKK 102
>gb|AAG19321.1| (AE005027) Vng0879c [Halobacterium sp. NRC-1]
Length = 121
Score = 107 bits (264), Expect = 6e-23
Identities = 54/119 (45%), Positives = 78/119 (65%)
Query: 1 MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFE 60
M +Y+V +EA +V+DVE+ ++AI AV++ L + LD+V VE G + CP CG +
Sbjct: 1 MSNYVVAMEAAWLVRDVENSDDAIGVAVSEAGKRLNDQDLDYVEVEAGVTGCPACGEGLD 60
Query: 61 SAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIRELHDGREE 119
+AF+ N LVG+ L L VFNA S EHA+RIAK+ VG AL+ VPL++ ++ E D E
Sbjct: 61 AAFLAANTALVGLVLELTVFNADSDEHAQRIAKSEVGGALRDVPLEVIDVIEDGDAPAE 119
>gb|AAF91260.1|AF230199_2 (AF230199) conserved hypothetical protein [Methanococcus
maripaludis]
Length = 113
Score = 105 bits (260), Expect = 2e-22
Identities = 51/113 (45%), Positives = 77/113 (68%)
Query: 1 MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFE 60
MG+Y V L+A I K+VE VE+AI A++++ L K LD+V +++G + CP CG +
Sbjct: 1 MGNYHVTLQASYIAKNVEDVEDAIGVAISQIGKLLNKGSLDYVDIDVGLTICPKCGEPID 60
Query: 61 SAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIREL 113
VV +VGI L++KVFNA+S EHA RIAK+ +G+ALK +PL+ ++ E+
Sbjct: 61 CVLVVAKTAIVGILLSMKVFNAESPEHAVRIAKSSIGRALKDIPLEDVDVVEI 113
>sp|Q60372|Y068_METJA HYPOTHETICAL PROTEIN MJ0068 >gi|2128109|pir||D64308 hypothetical
protein MJ0068 - Methanococcus jannaschii
>gi|1498830|gb|AAB98047.1| (U67464) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 115
Score = 103 bits (255), Expect = 7e-22
Identities = 50/113 (44%), Positives = 76/113 (67%)
Query: 1 MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFE 60
M +Y V L+A IV++V+ VE+AI ++++ L KE L++V +++G + CP CG +
Sbjct: 1 MPNYHVTLQAAYIVRNVDDVEDAISVTISQIGKMLNKEGLNYVDIDIGLTICPKCGELVD 60
Query: 61 SAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIREL 113
VV LVG+ L++KVFNA+S EHA RIAKA +GK LK +PL+ ++ EL
Sbjct: 61 CVLVVARTALVGVLLSMKVFNAESPEHAIRIAKATIGKVLKNIPLEPVDVVEL 113
>gi|11497898 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7482987|pir||B69285 conserved hypothetical protein
AF0282 - Archaeoglobus fulgidus
>gi|2650354|gb|AAB90951.1| (AE001085) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 113
Score = 97.9 bits (240), Expect = 4e-20
Identities = 47/113 (41%), Positives = 76/113 (66%), Gaps = 1/113 (0%)
Query: 1 MGDYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFE 60
M DY+VVL+A IV+ SVE+A+ AV + L + LDFV++++G + CP C + +
Sbjct: 1 MPDYLVVLQAAWIVRKARSVEDAMNIAVAEAGKKLNPD-LDFVKIDVGDTACPKCNSPLK 59
Query: 61 SAFVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIREL 113
+ F+V + LVG+ +KVFNA+S EHA +IAK +GK + ++PL++ E+ E+
Sbjct: 60 AVFMVAGVALVGLIFEMKVFNAKSPEHAAKIAKYEIGKRMPRIPLEVIEVAEI 112
>gb|AAG19621.1| (AE005051) Vng1264c [Halobacterium sp. NRC-1]
Length = 127
Score = 87.0 bits (212), Expect = 8e-17
Identities = 49/129 (37%), Positives = 76/129 (57%), Gaps = 5/129 (3%)
Query: 3 DYIVVLEAPIIVKDVESVEEAIEAAVNKVMTALEKEKLDFVRVELGYSKCPVCGAHFESA 62
D VV+EA + V DV+S +EA+ A++K L + L++V +E+G CP CG E A
Sbjct: 2 DCRVVVEAAVPVYDVQSTDEAVRIAISKTGEMLNPD-LNYVEIEMGSRSCPHCGTDTEPA 60
Query: 63 FVVGNIGLVGIYLTLKVFNAQSLEHAERIAKAVVGKALKKVPLKLFEIREL-HDGREENN 121
FV + LV + L++ VFN + EHA RIA+ +G+ L +PL + E+ + D +E+
Sbjct: 61 FVAADESLVALELSMTVFNVERDEHAARIARKEIGQRLANIPLAVLEVDTVTDDDTQEST 120
Query: 122 GIEAGENET 130
G G+ ET
Sbjct: 121 G---GDTET 126
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.136 0.372
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43323580
Number of Sequences: 2977
Number of extensions: 1475028
Number of successful extensions: 4594
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4586
Number of HSP's gapped (non-prelim): 7
length of query: 132
length of database: 189,106,746
effective HSP length: 57
effective length of query: 75
effective length of database: 154,992,987
effective search space: 11624474025
effective search space used: 11624474025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 160 (66.7 bits)