BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1806 (PAB1806) DE:Hypothetical protein
(222 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V0F7|YI06_PYRAB HYPOTHETICAL PROTEIN PAB1806 >gi|7518240|pi... 465 e-130
sp|O59052|YD14_PYRHO HYPOTHETICAL PROTEIN PH1314 >gi|7519081|pir... 419 e-116
sp|Q58858|YE63_METJA HYPOTHETICAL PROTEIN MJ1463 >gi|2128876|pir... 151 8e-36
sp|O66958|Y756_AQUAE HYPOTHETICAL PROTEIN AQ_756 >gi|7514530|pir... 137 1e-31
>sp|Q9V0F7|YI06_PYRAB HYPOTHETICAL PROTEIN PAB1806 >gi|7518240|pir||A75129 hypothetical
protein PAB1806 - Pyrococcus abyssi (strain Orsay)
>gi|5458257|emb|CAB49746.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 222
Score = 465 bits (1183), Expect = e-130
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MMEGYYIIENPGVVPAERRFRMKDLKAWGYDLHLGTIEGERAYFVSKVGERREGEKYQVG 60
MMEGYYIIENPGVVPAERRFRMKDLKAWGYDLHLGTIEGERAYFVSKVGERREGEKYQVG
Sbjct: 1 MMEGYYIIENPGVVPAERRFRMKDLKAWGYDLHLGTIEGERAYFVSKVGERREGEKYQVG 60
Query: 61 GKEYYIEETQKDIPGNARLLARIVIERGNPYLEFWLEEEDTKFPLAKEDPRIILKRIWEK 120
GKEYYIEETQKDIPGNARLLARIVIERGNPYLEFWLEEEDTKFPLAKEDPRIILKRIWEK
Sbjct: 61 GKEYYIEETQKDIPGNARLLARIVIERGNPYLEFWLEEEDTKFPLAKEDPRIILKRIWEK 120
Query: 121 EKLNQLLKHVRAIGLTTDFYKDNVFIKSIPLPYEEYPPKVRRVLREVRDIHRDLTGFGRF 180
EKLNQLLKHVRAIGLTTDFYKDNVFIKSIPLPYEEYPPKVRRVLREVRDIHRDLTGFGRF
Sbjct: 121 EKLNQLLKHVRAIGLTTDFYKDNVFIKSIPLPYEEYPPKVRRVLREVRDIHRDLTGFGRF 180
Query: 181 VFQYFGEVEKAHNYRLHWTLPTLHLFDVDIANEVDKILGMLD 222
VFQYFGEVEKAHNYRLHWTLPTLHLFDVDIANEVDKILGMLD
Sbjct: 181 VFQYFGEVEKAHNYRLHWTLPTLHLFDVDIANEVDKILGMLD 222
>sp|O59052|YD14_PYRHO HYPOTHETICAL PROTEIN PH1314 >gi|7519081|pir||D71002 hypothetical
protein PH1314 - Pyrococcus horikoshii
>gi|3257737|dbj|BAA30420.1| (AP000006) 225aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 225
Score = 419 bits (1065), Expect = e-116
Identities = 194/222 (87%), Positives = 207/222 (92%)
Query: 1 MMEGYYIIENPGVVPAERRFRMKDLKAWGYDLHLGTIEGERAYFVSKVGERREGEKYQVG 60
M+EGYYIIENPGVVPAERRFRMKDLKAWGYDLHLGTIEGERAYF+SK GER EGE Y
Sbjct: 4 MLEGYYIIENPGVVPAERRFRMKDLKAWGYDLHLGTIEGERAYFISKTGERHEGETYIFK 63
Query: 61 GKEYYIEETQKDIPGNARLLARIVIERGNPYLEFWLEEEDTKFPLAKEDPRIILKRIWEK 120
GKEY++ TQK+IP NARLLARI+IERGNPYLE WLEEED KFPL KEDPRIILKRIWEK
Sbjct: 64 GKEYHVSRTQKEIPENARLLARIIIERGNPYLEVWLEEEDVKFPLTKEDPRIILKRIWEK 123
Query: 121 EKLNQLLKHVRAIGLTTDFYKDNVFIKSIPLPYEEYPPKVRRVLREVRDIHRDLTGFGRF 180
EKLNQLLKHVRA+GLTTDFYKDNVF + IPLPYEEYPPKVRRVLREV+DIHRDLTGFGRF
Sbjct: 124 EKLNQLLKHVRAVGLTTDFYKDNVFTQGIPLPYEEYPPKVRRVLREVKDIHRDLTGFGRF 183
Query: 181 VFQYFGEVEKAHNYRLHWTLPTLHLFDVDIANEVDKILGMLD 222
VFQYFGEV+K HNYRL+WTLPTLHLFD+DIANEVDK+LGMLD
Sbjct: 184 VFQYFGEVDKMHNYRLYWTLPTLHLFDIDIANEVDKVLGMLD 225
>sp|Q58858|YE63_METJA HYPOTHETICAL PROTEIN MJ1463 >gi|2128876|pir||F64482 hypothetical
protein MJ1463 - Methanococcus jannaschii
>gi|1592104|gb|AAB99477.1| (U67587) M. jannaschii
predicted coding region MJ1463 [Methanococcus
jannaschii]
Length = 233
Score = 151 bits (377), Expect = 8e-36
Identities = 79/217 (36%), Positives = 123/217 (56%), Gaps = 4/217 (1%)
Query: 7 IIENPGVVPAERRFRMKDLKAWGYDLHLGTIEGERAYFVSKVGERREGEKYQVGGKEYYI 66
+ E G ER F++K LK WG+DL G ++G+ YF ++ ER+ G+K+ GKEY +
Sbjct: 15 VFETLGNPEKEREFKLKSLKRWGFDLIFGKVDGKETYFTVELDERKAGDKFSKDGKEYEV 74
Query: 67 EETQKDIPGNARLLARIVIERGNPYLEFWLEEEDTK-FPLAKEDPRIILKRIWEKEKLNQ 125
E +++P N L A I +E G Y+ L +ED K + + +L +K KL
Sbjct: 75 IEVLQELPKNTELYAHIEMEMGKAYIVCQLRDEDGKNTEVLRVPAATLLLAFLKKNKLAN 134
Query: 126 LLKHVRAIGLTTDFYKDNVFIKSIPLPYEEYPPKVRRVLREVRDIHRDLTGFGRFVFQYF 185
++K ++ +G++ + N + PL YEE P RR +R R + ++ TGFGR F Y+
Sbjct: 135 IIKAIKNVGISLELSMQN-GVGGKPLSYEELPNVARRFIRSARKVEKE-TGFGRLSFAYY 192
Query: 186 GEVEKAH-NYRLHWTLPTLHLFDVDIANEVDKILGML 221
GE + YR W LPT+ LFD+DIA +V++ LG+L
Sbjct: 193 GETKDGEPRYRFSWLLPTIALFDLDIAKKVEQTLGIL 229
>sp|O66958|Y756_AQUAE HYPOTHETICAL PROTEIN AQ_756 >gi|7514530|pir||C70366 conserved
hypothetical protein aq_756 - Aquifex aeolicus
>gi|2983339|gb|AAC06928.1| (AE000706) hypothetical
protein [Aquifex aeolicus]
Length = 229
Score = 137 bits (342), Expect = 1e-31
Identities = 73/213 (34%), Positives = 119/213 (55%), Gaps = 4/213 (1%)
Query: 7 IIENPGVVPAERRFRMKDLKAWGYDLHLGTIEGERAYFVSKVGERREGEKYQVGGKEYYI 66
+ E G ER F ++DL+ WG+DL LG G R +F S+ G R G+K++ GG Y I
Sbjct: 16 VFETLGQPEKEREFTIQDLRRWGFDLILGKKNGVRTFFASQAG-REVGDKWEEGGATYEI 74
Query: 67 EETQKDIPGNARLLARIVIERGNPYLEFWLEEEDTKFPLAKEDPRIILKRIWEKEKLNQL 126
EE ++P N +L A I G Y+ L E + + +L ++K +L++L
Sbjct: 75 EEILLELPENKKLFAHIETSEGVAYIVAELREGKENLEILRTPAPTLLMAFFKKHRLHEL 134
Query: 127 LKHVRAIGLTTDFYKDNVFIKSIPLPYEEYPPKVRRVLREVRDIHRDLTGFGRFVFQYFG 186
+++++G+ T+FYK +S+PLPY++ P R L + + + + GFGR YFG
Sbjct: 135 ANNLKSVGVITEFYKQR-GRESLPLPYKKLPLVARDFLERAKKVEK-MAGFGRVALAYFG 192
Query: 187 EV-EKAHNYRLHWTLPTLHLFDVDIANEVDKIL 218
+ EK + +R+ W LPT+ LFD+DI+ + + L
Sbjct: 193 KTREKDNRFRVSWLLPTIALFDIDISEKANTAL 225
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.144 0.439
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92148640
Number of Sequences: 2977
Number of extensions: 4103436
Number of successful extensions: 9099
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9089
Number of HSP's gapped (non-prelim): 4
length of query: 222
length of database: 189,106,746
effective HSP length: 50
effective length of query: 172
effective length of database: 159,182,396
effective search space: 27379372112
effective search space used: 27379372112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)