BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1807 (PAB1807) DE:Hypothetical protein
         (185 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75128 hypothetical protein PAB1807 - Pyrococcus abyssi (st...   356  7e-98
pir||E71002 hypothetical protein PH1315 - Pyrococcus horikoshii ...   219  1e-56

>pir||H75128 hypothetical protein PAB1807 - Pyrococcus abyssi (strain Orsay)
           >gi|5458256|emb|CAB49745.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 185
           
 Score =  356 bits (905), Expect = 7e-98
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MIQVGLFSFRKGEKGKIKKMLEEGRIDEVLRKASKNKKTADSLIELLEDENPGTVGDALM 60
           MIQVGLFSFRKGEKGKIKKMLEEGRIDEVLRKASKNKKTADSLIELLEDENPGTVGDALM
Sbjct: 1   MIQVGLFSFRKGEKGKIKKMLEEGRIDEVLRKASKNKKTADSLIELLEDENPGTVGDALM 60

Query: 61  VISNMVKEGDSTVVVDEKLVRKALELLTSKVTYVREGAMALSMEIAKRYGDKHREEFSKG 120
           VISNMVKEGDSTVVVDEKLVRKALELLTSKVTYVREGAMALSMEIAKRYGDKHREEFSKG
Sbjct: 61  VISNMVKEGDSTVVVDEKLVRKALELLTSKVTYVREGAMALSMEIAKRYGDKHREEFSKG 120

Query: 121 IERLLDEGDVNQVAFALLLIKELKLIQFKDRVEQLVNIDEKVMLPFEGRRWVKLGDIAKE 180
           IERLLDEGDVNQVAFALLLIKELKLIQFKDRVEQLVNIDEKVMLPFEGRRWVKLGDIAKE
Sbjct: 121 IERLLDEGDVNQVAFALLLIKELKLIQFKDRVEQLVNIDEKVMLPFEGRRWVKLGDIAKE 180

Query: 181 VLSSL 185
           VLSSL
Sbjct: 181 VLSSL 185


>pir||E71002 hypothetical protein PH1315 - Pyrococcus horikoshii
           >gi|3257738|dbj|BAA30421.1| (AP000006) 184aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 184
           
 Score =  219 bits (553), Expect = 1e-56
 Identities = 109/186 (58%), Positives = 152/186 (81%), Gaps = 3/186 (1%)

Query: 1   MIQVGLFSFRKGEKGKIKKMLEEGRIDEVLRKASKNKKTADSLIELLEDENPGTVGDALM 60
           M QV LFSFR+  K  IKK+LE+G+++EV++KA +N+K A+ L+ELL+D+NPG VGD+LM
Sbjct: 1   MTQVPLFSFRRSNK--IKKLLEDGKMEEVVKKALENEKIANHLVELLDDKNPGIVGDSLM 58

Query: 61  VISNMVKEGDSTVVVDEKLVRKALELL-TSKVTYVREGAMALSMEIAKRYGDKHREEFSK 119
           VIS ++KE  + V + ++L+ K  +LL TSKV YV++GAMAL +E+AK YG++ RE FSK
Sbjct: 59  VISMVIKENPNAVRITQELIEKIFDLLATSKVAYVKDGAMALLLELAKNYGNEFRESFSK 118

Query: 120 GIERLLDEGDVNQVAFALLLIKELKLIQFKDRVEQLVNIDEKVMLPFEGRRWVKLGDIAK 179
           G+E+L+ +GD + VAFALLLIKELKL QFKD V  L+ +++KV+LPF+GRRWV++GDIA+
Sbjct: 119 GVEKLMKKGDKSIVAFALLLIKELKLSQFKDTVTSLLEVEDKVILPFKGRRWVRIGDIAR 178

Query: 180 EVLSSL 185
           EVL SL
Sbjct: 179 EVLDSL 184


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.137    0.359 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58247400
Number of Sequences: 2977
Number of extensions: 2121120
Number of successful extensions: 8332
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8328
Number of HSP's gapped (non-prelim): 2
length of query: 185
length of database: 189,106,746
effective HSP length: 60
effective length of query: 125
effective length of database: 153,197,526
effective search space: 19149690750
effective search space used: 19149690750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 162 (67.5 bits)