BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1808 (PAB1808) DE:Hypothetical protein
         (153 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75128 hypothetical protein PAB1808 - Pyrococcus abyssi (st...   323  5e-88
pir||H71002 hypothetical protein PH1318 - Pyrococcus horikoshii ...   275  1e-73
gi|11498003 A. fulgidus predicted coding region AF0391 [Archaeog...    85  3e-16

>pir||D75128 hypothetical protein PAB1808 - Pyrococcus abyssi (strain Orsay)
           >gi|5458252|emb|CAB49741.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 153
           
 Score =  323 bits (820), Expect = 5e-88
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MEVLEIREIQAKDIVVSPRPVWKCRTCPMYGKRPSCPPYAPSWKETIEVMKHYKRAILVK 60
           MEVLEIREIQAKDIVVSPRPVWKCRTCPMYGKRPSCPPYAPSWKETIEVMKHYKRAILVK
Sbjct: 1   MEVLEIREIQAKDIVVSPRPVWKCRTCPMYGKRPSCPPYAPSWKETIEVMKHYKRAILVK 60

Query: 61  FKIDTSRFEEEKRRVLVWLLNKEKELFREGNYYALALFPGNCNLCEECTFETEGKCKKPE 120
           FKIDTSRFEEEKRRVLVWLLNKEKELFREGNYYALALFPGNCNLCEECTFETEGKCKKPE
Sbjct: 61  FKIDTSRFEEEKRRVLVWLLNKEKELFREGNYYALALFPGNCNLCEECTFETEGKCKKPE 120

Query: 121 MVRPSIDAIGIELSSIIEIRFNEPVLYGMILVD 153
           MVRPSIDAIGIELSSIIEIRFNEPVLYGMILVD
Sbjct: 121 MVRPSIDAIGIELSSIIEIRFNEPVLYGMILVD 153


>pir||H71002 hypothetical protein PH1318 - Pyrococcus horikoshii
           >gi|3257741|dbj|BAA30424.1| (AP000006) 153aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 153
           
 Score =  275 bits (697), Expect = 1e-73
 Identities = 121/153 (79%), Positives = 141/153 (92%)

Query: 1   MEVLEIREIQAKDIVVSPRPVWKCRTCPMYGKRPSCPPYAPSWKETIEVMKHYKRAILVK 60
           MEVLEIRE+QAKD+V+SPRPVWKCRTC MYGKRP+CPPY PSWKE  E++KHY++ +L+K
Sbjct: 1   MEVLEIREVQAKDVVISPRPVWKCRTCIMYGKRPNCPPYVPSWKEARELLKHYRKILLIK 60

Query: 61  FKIDTSRFEEEKRRVLVWLLNKEKELFREGNYYALALFPGNCNLCEECTFETEGKCKKPE 120
           FKID   FEEEKR+VL WLLNKEKELF++GNYY+LALFPG+CNLC+ CTFETEGKCK PE
Sbjct: 61  FKIDVENFEEEKRKVLRWLLNKEKELFKKGNYYSLALFPGSCNLCDTCTFETEGKCKMPE 120

Query: 121 MVRPSIDAIGIELSSIIEIRFNEPVLYGMILVD 153
           MVRPSI+AIGIELSS++EI FNEPVLYG+ILVD
Sbjct: 121 MVRPSINAIGIELSSLVEINFNEPVLYGIILVD 153


>gi|11498003 A. fulgidus predicted coding region AF0391 [Archaeoglobus fulgidus]
           >gi|7483415|pir||G69298 hypothetical protein AF0391 -
           Archaeoglobus fulgidus >gi|2650244|gb|AAB90848.1|
           (AE001077) A. fulgidus predicted coding region AF0391
           [Archaeoglobus fulgidus]
           Length = 152
           
 Score = 85.4 bits (208), Expect = 3e-16
 Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 15/134 (11%)

Query: 4   LEIREIQAKDIVVSPRPVWKCRT-CPMYGKRPSCPPYAPSWKETIEVMKHYKRAILVKFK 62
           +E  E++   I + PR  WKC   C  YG  PSCPP  P ++E    ++ Y+RA L +FK
Sbjct: 20  VEFEEVEPAKIKLDPRARWKCMFGCESYGM-PSCPPNVPDFEECERFVRAYRRAYLFRFK 78

Query: 63  IDTSRFEEEKRRVLVWLLNKEKELFREGNYYALALFPGNCNLCEECTFETEGKCKKPEMV 122
           +   + +E+ RR   ++L  E  L +    +A A FPG+C LC EC+    G+C +   V
Sbjct: 79  V---KSKEDVRRAQEFMLEAELSLKKP---FAFATFPGSCMLCNECS----GRCSR---V 125

Query: 123 RPSIDAIGIELSSI 136
           RPS+ A+ ++ SS+
Sbjct: 126 RPSLSALCVDASSL 139


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.140    0.439 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60733762
Number of Sequences: 2977
Number of extensions: 2384212
Number of successful extensions: 5049
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5045
Number of HSP's gapped (non-prelim): 3
length of query: 153
length of database: 189,106,746
effective HSP length: 49
effective length of query: 104
effective length of database: 159,780,883
effective search space: 16617211832
effective search space used: 16617211832
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)