BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1809 (PAB1809) DE:Hypothetical protein
         (190 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75128 hypothetical protein PAB1809 - Pyrococcus abyssi (st...   363  e-100
pir||A71003 hypothetical protein PH1319 - Pyrococcus horikoshii ...   242  2e-63
pir||B64505 hypothetical protein MJ1644 - Methanococcus jannasch...   129  2e-29
pir||A72226 conserved hypothetical protein - Thermotoga maritima...    95  5e-19
pir||B72636 hypothetical protein APE1545 - Aeropyrum pernix (str...    93  2e-18

>pir||C75128 hypothetical protein PAB1809 - Pyrococcus abyssi (strain Orsay)
           >gi|5458251|emb|CAB49740.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 190
           
 Score =  363 bits (923), Expect = e-100
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60
           MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK
Sbjct: 1   MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60

Query: 61  AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT 120
           AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT
Sbjct: 61  AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT 120

Query: 121 YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDEI 180
           YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDEI
Sbjct: 121 YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDEI 180

Query: 181 KKLERSAVSP 190
           KKLERSAVSP
Sbjct: 181 KKLERSAVSP 190


>pir||A71003 hypothetical protein PH1319 - Pyrococcus horikoshii
           >gi|3257742|dbj|BAA30425.1| (AP000006) 190aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 190
           
 Score =  242 bits (612), Expect = 2e-63
 Identities = 122/190 (64%), Positives = 150/190 (78%)

Query: 1   MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60
           MSLSNAK+YGGIGAILQL+    G+   +LSIVGLVLVF+AVK+ISEE  D  IF+ YLK
Sbjct: 1   MSLSNAKVYGGIGAILQLIGPLVGSTGVILSIVGLVLVFIAVKMISEETRDDRIFSLYLK 60

Query: 61  AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT 120
            FISM+ GL+LF  ++ AT G+AI +     MMSP H  ++L  IL G VILWIAYI+GT
Sbjct: 61  GFISMLVGLVLFIAVVFATVGSAIFRMTGKAMMSPAHMISLLIPILAGLVILWIAYIVGT 120

Query: 121 YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDEI 180
           YFQKKSFELI QYT V +FKT GL+YFIGA+L+I+AIG L+++I AILE+VAFFSLP+EI
Sbjct: 121 YFQKKSFELITQYTGVDMFKTAGLIYFIGALLIIVAIGFLVIIIAAILEVVAFFSLPEEI 180

Query: 181 KKLERSAVSP 190
           K+ E + VSP
Sbjct: 181 KESEIAPVSP 190


>pir||B64505 hypothetical protein MJ1644 - Methanococcus jannaschii
           >gi|1592228|gb|AAB99675.1| (U67605) M. jannaschii
           predicted coding region MJ1644 [Methanococcus
           jannaschii]
           Length = 177
           
 Score =  129 bits (321), Expect = 2e-29
 Identities = 70/182 (38%), Positives = 110/182 (59%), Gaps = 12/182 (6%)

Query: 1   MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60
           M L  AK  GGIGA+L LVS   G    +L+I G VL+ LA+  IS+   D ++F  YL 
Sbjct: 4   MELKEAKYLGGIGAVLNLVSYAVGG---ILAIAGYVLILLALNKISKIFNDDEVFKKYLY 60

Query: 61  AFIS-MVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIG 119
             +  ++A L++ F + ++    + I          ++    + S L+G ++ +I  +IG
Sbjct: 61  GVVLWIIAVLIVIFAVGISFVSLSFIP--------LDYGLTAMSSFLVGVILFYILSVIG 112

Query: 120 TYFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDE 179
            YF KKS+E ++ YT V  F+  GLLYFIG +LLI+ +G +++++  ILEIVA+FSLPD+
Sbjct: 113 GYFIKKSYEKVSYYTGVDSFRICGLLYFIGTLLLIVIVGIIVIIVAQILEIVAYFSLPDD 172

Query: 180 IK 181
           +K
Sbjct: 173 LK 174


>pir||A72226 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4982250|gb|AAD36742.1|AE001808_17 (AE001808)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 168
           
 Score = 95.2 bits (233), Expect = 5e-19
 Identities = 59/180 (32%), Positives = 96/180 (52%), Gaps = 16/180 (8%)

Query: 1   MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60
           M+LS AK   G+G IL+L         W+ S+VGL+L  + +  IS++ G+  IFNY L 
Sbjct: 1   MNLSTAKTLAGVGMILKLFGAVP-VVGWIFSLVGLILFLIGIYNISQQVGERRIFNYLLI 59

Query: 61  AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT 120
             + ++   ++F V +VA+          GG+ +        G  L GFV + +  II  
Sbjct: 60  PAVLLLIVSVIFSVSLVASL-------FAGGLFAG-------GVTLAGFVTIVVLGIIAL 105

Query: 121 YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLII-AIGALILLIGAILEIVAFFSLPDE 179
            ++ K++ +IA+   + +F T    Y  GAILL++  +G +++ +G IL IV FFS P E
Sbjct: 106 VYKVKAYRMIAESLKISVFNTAASFYKWGAILLVVFGMGFILMFVGDILTIVGFFSKPSE 165


>pir||B72636 hypothetical protein APE1545 - Aeropyrum pernix (strain K1)
           >gi|5105230|dbj|BAA80544.1| (AP000061) 200aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 200
           
 Score = 93.2 bits (228), Expect = 2e-18
 Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 6/177 (3%)

Query: 3   LSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLKAF 62
           +  A++ G  G+ L L+ I        LS++G VLV +++ ++S++ G+  IF   + + 
Sbjct: 10  IGTARMLGIAGSALVLLGILIP----FLSLIGFVLVLVSLYMLSKQMGEESIFRNAVISV 65

Query: 63  ISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGTYF 122
           +  +AG ++F    +  A    + G  G         A +GS+L GFVIL+IA +    F
Sbjct: 66  VLSIAGFIVF--AFLTGASFFAMAGALGSGELTALTAAGIGSLLAGFVILYIAMVASAVF 123

Query: 123 QKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDE 179
            +++ E +A  T V +F+  GL Y +G+I LI+ +G LILLI  +L +V F  L  E
Sbjct: 124 FRRALEALAGRTGVDMFRHAGLAYLVGSITLIVLVGGLILLIAWVLLLVGFIQLRPE 180


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.149    0.421 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61696316
Number of Sequences: 2977
Number of extensions: 2269237
Number of successful extensions: 12028
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12019
Number of HSP's gapped (non-prelim): 5
length of query: 190
length of database: 189,106,746
effective HSP length: 52
effective length of query: 138
effective length of database: 157,985,422
effective search space: 21801988236
effective search space used: 21801988236
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 163 (67.9 bits)