BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1809 (PAB1809) DE:Hypothetical protein
(190 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75128 hypothetical protein PAB1809 - Pyrococcus abyssi (st... 363 e-100
pir||A71003 hypothetical protein PH1319 - Pyrococcus horikoshii ... 242 2e-63
pir||B64505 hypothetical protein MJ1644 - Methanococcus jannasch... 129 2e-29
pir||A72226 conserved hypothetical protein - Thermotoga maritima... 95 5e-19
pir||B72636 hypothetical protein APE1545 - Aeropyrum pernix (str... 93 2e-18
>pir||C75128 hypothetical protein PAB1809 - Pyrococcus abyssi (strain Orsay)
>gi|5458251|emb|CAB49740.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 190
Score = 363 bits (923), Expect = e-100
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60
MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK
Sbjct: 1 MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60
Query: 61 AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT 120
AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT
Sbjct: 61 AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT 120
Query: 121 YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDEI 180
YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDEI
Sbjct: 121 YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDEI 180
Query: 181 KKLERSAVSP 190
KKLERSAVSP
Sbjct: 181 KKLERSAVSP 190
>pir||A71003 hypothetical protein PH1319 - Pyrococcus horikoshii
>gi|3257742|dbj|BAA30425.1| (AP000006) 190aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 190
Score = 242 bits (612), Expect = 2e-63
Identities = 122/190 (64%), Positives = 150/190 (78%)
Query: 1 MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60
MSLSNAK+YGGIGAILQL+ G+ +LSIVGLVLVF+AVK+ISEE D IF+ YLK
Sbjct: 1 MSLSNAKVYGGIGAILQLIGPLVGSTGVILSIVGLVLVFIAVKMISEETRDDRIFSLYLK 60
Query: 61 AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT 120
FISM+ GL+LF ++ AT G+AI + MMSP H ++L IL G VILWIAYI+GT
Sbjct: 61 GFISMLVGLVLFIAVVFATVGSAIFRMTGKAMMSPAHMISLLIPILAGLVILWIAYIVGT 120
Query: 121 YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDEI 180
YFQKKSFELI QYT V +FKT GL+YFIGA+L+I+AIG L+++I AILE+VAFFSLP+EI
Sbjct: 121 YFQKKSFELITQYTGVDMFKTAGLIYFIGALLIIVAIGFLVIIIAAILEVVAFFSLPEEI 180
Query: 181 KKLERSAVSP 190
K+ E + VSP
Sbjct: 181 KESEIAPVSP 190
>pir||B64505 hypothetical protein MJ1644 - Methanococcus jannaschii
>gi|1592228|gb|AAB99675.1| (U67605) M. jannaschii
predicted coding region MJ1644 [Methanococcus
jannaschii]
Length = 177
Score = 129 bits (321), Expect = 2e-29
Identities = 70/182 (38%), Positives = 110/182 (59%), Gaps = 12/182 (6%)
Query: 1 MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60
M L AK GGIGA+L LVS G +L+I G VL+ LA+ IS+ D ++F YL
Sbjct: 4 MELKEAKYLGGIGAVLNLVSYAVGG---ILAIAGYVLILLALNKISKIFNDDEVFKKYLY 60
Query: 61 AFIS-MVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIG 119
+ ++A L++ F + ++ + I ++ + S L+G ++ +I +IG
Sbjct: 61 GVVLWIIAVLIVIFAVGISFVSLSFIP--------LDYGLTAMSSFLVGVILFYILSVIG 112
Query: 120 TYFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDE 179
YF KKS+E ++ YT V F+ GLLYFIG +LLI+ +G +++++ ILEIVA+FSLPD+
Sbjct: 113 GYFIKKSYEKVSYYTGVDSFRICGLLYFIGTLLLIVIVGIIVIIVAQILEIVAYFSLPDD 172
Query: 180 IK 181
+K
Sbjct: 173 LK 174
>pir||A72226 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982250|gb|AAD36742.1|AE001808_17 (AE001808)
conserved hypothetical protein [Thermotoga maritima]
Length = 168
Score = 95.2 bits (233), Expect = 5e-19
Identities = 59/180 (32%), Positives = 96/180 (52%), Gaps = 16/180 (8%)
Query: 1 MSLSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLK 60
M+LS AK G+G IL+L W+ S+VGL+L + + IS++ G+ IFNY L
Sbjct: 1 MNLSTAKTLAGVGMILKLFGAVP-VVGWIFSLVGLILFLIGIYNISQQVGERRIFNYLLI 59
Query: 61 AFISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGT 120
+ ++ ++F V +VA+ GG+ + G L GFV + + II
Sbjct: 60 PAVLLLIVSVIFSVSLVASL-------FAGGLFAG-------GVTLAGFVTIVVLGIIAL 105
Query: 121 YFQKKSFELIAQYTDVGLFKTTGLLYFIGAILLII-AIGALILLIGAILEIVAFFSLPDE 179
++ K++ +IA+ + +F T Y GAILL++ +G +++ +G IL IV FFS P E
Sbjct: 106 VYKVKAYRMIAESLKISVFNTAASFYKWGAILLVVFGMGFILMFVGDILTIVGFFSKPSE 165
>pir||B72636 hypothetical protein APE1545 - Aeropyrum pernix (strain K1)
>gi|5105230|dbj|BAA80544.1| (AP000061) 200aa long
hypothetical protein [Aeropyrum pernix]
Length = 200
Score = 93.2 bits (228), Expect = 2e-18
Identities = 57/177 (32%), Positives = 96/177 (54%), Gaps = 6/177 (3%)
Query: 3 LSNAKLYGGIGAILQLVSIFAGTYSWLLSIVGLVLVFLAVKIISEEAGDSDIFNYYLKAF 62
+ A++ G G+ L L+ I LS++G VLV +++ ++S++ G+ IF + +
Sbjct: 10 IGTARMLGIAGSALVLLGILIP----FLSLIGFVLVLVSLYMLSKQMGEESIFRNAVISV 65
Query: 63 ISMVAGLLLFFVIIVATAGTAIIKGLKGGMMSPEHFFAILGSILIGFVILWIAYIIGTYF 122
+ +AG ++F + A + G G A +GS+L GFVIL+IA + F
Sbjct: 66 VLSIAGFIVF--AFLTGASFFAMAGALGSGELTALTAAGIGSLLAGFVILYIAMVASAVF 123
Query: 123 QKKSFELIAQYTDVGLFKTTGLLYFIGAILLIIAIGALILLIGAILEIVAFFSLPDE 179
+++ E +A T V +F+ GL Y +G+I LI+ +G LILLI +L +V F L E
Sbjct: 124 FRRALEALAGRTGVDMFRHAGLAYLVGSITLIVLVGGLILLIAWVLLLVGFIQLRPE 180
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.149 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61696316
Number of Sequences: 2977
Number of extensions: 2269237
Number of successful extensions: 12028
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12019
Number of HSP's gapped (non-prelim): 5
length of query: 190
length of database: 189,106,746
effective HSP length: 52
effective length of query: 138
effective length of database: 157,985,422
effective search space: 21801988236
effective search space used: 21801988236
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 163 (67.9 bits)