BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1812 (PAB1812) DE:Hypothetical protein
         (139 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75127 hypothetical protein PAB1812 - Pyrococcus abyssi (st...   274  3e-73
pir||E71003 hypothetical protein PH1323 - Pyrococcus horikoshii ...   262  1e-69
sp|Q58068|Y652_METJA HYPOTHETICAL PROTEIN MJ0652 >gi|2128429|pir...   102  2e-21

>pir||G75127 hypothetical protein PAB1812 - Pyrococcus abyssi (strain Orsay)
           >gi|5458247|emb|CAB49736.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 139
           
 Score =  274 bits (694), Expect = 3e-73
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MVTKRLPGKIRRALRARYYDIEPKAWIGKKGITESVIKEIETQLARTGVLKVEIRKGALI 60
           MVTKRLPGKIRRALRARYYDIEPKAWIGKKGITESVIKEIETQLARTGVLKVEIRKGALI
Sbjct: 1   MVTKRLPGKIRRALRARYYDIEPKAWIGKKGITESVIKEIETQLARTGVLKVEIRKGALI 60

Query: 61  STKMGRKEIAEKVAELTDSELLEVRGKRFILFKPREGWERYLKKLQMKEQSKRKVREEPI 120
           STKMGRKEIAEKVAELTDSELLEVRGKRFILFKPREGWERYLKKLQMKEQSKRKVREEPI
Sbjct: 61  STKMGRKEIAEKVAELTDSELLEVRGKRFILFKPREGWERYLKKLQMKEQSKRKVREEPI 120

Query: 121 RRIKLDILEFRKKFKRGRG 139
           RRIKLDILEFRKKFKRGRG
Sbjct: 121 RRIKLDILEFRKKFKRGRG 139


>pir||E71003 hypothetical protein PH1323 - Pyrococcus horikoshii
           >gi|3257746|dbj|BAA30429.1| (AP000006) 139aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 139
           
 Score =  262 bits (663), Expect = 1e-69
 Identities = 130/139 (93%), Positives = 137/139 (98%)

Query: 1   MVTKRLPGKIRRALRARYYDIEPKAWIGKKGITESVIKEIETQLARTGVLKVEIRKGALI 60
           MVTKRLPGKIRRALRARYYDIEPKAWIGKKGITESVIKEIETQLARTGVLKVEIRKGA I
Sbjct: 1   MVTKRLPGKIRRALRARYYDIEPKAWIGKKGITESVIKEIETQLARTGVLKVEIRKGAFI 60

Query: 61  STKMGRKEIAEKVAELTDSELLEVRGKRFILFKPREGWERYLKKLQMKEQSKRKVREEPI 120
           +TKM RKEIAE+VAELTDSELLEVRGKRFILFKPREGWE+YLKKLQMKEQ+K+KV+EEPI
Sbjct: 61  ATKMSRKEIAERVAELTDSELLEVRGKRFILFKPREGWEKYLKKLQMKEQAKKKVKEEPI 120

Query: 121 RRIKLDILEFRKKFKRGRG 139
           R+IKLDILEFRKKFKRGRG
Sbjct: 121 RKIKLDILEFRKKFKRGRG 139


>sp|Q58068|Y652_METJA HYPOTHETICAL PROTEIN MJ0652 >gi|2128429|pir||D64381 conserved
           hypothetical protein MJ0652 - Methanococcus jannaschii
           >gi|1591364|gb|AAB98643.1| (U67512) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 134
           
 Score =  102 bits (251), Expect = 2e-21
 Identities = 55/133 (41%), Positives = 89/133 (66%), Gaps = 14/133 (10%)

Query: 4   KRLPGKIRRALRARYYDIEPKAWIGKKGITESVIKEIETQLARTGVLKVEIRKGALISTK 63
           ++L GK++R LRA+ + +EP  W+GK+G +E VIKE++ QL   G++KV++RK AL+   
Sbjct: 11  RKLTGKMKRMLRAKAHHLEPVVWVGKEG-SEKVIKEVDRQLKERGLIKVKVRKAALLYED 69

Query: 64  MGRKEIAEKVAELTDSELLEVRGKRFILFKPREGWERYLKKLQMKEQSKRKVREEPIRRI 123
             + EIAEK+A+  D+E++ V G    LF+PREGW++YL K     + K+KV+++     
Sbjct: 70  --KYEIAEKLAKACDAEVVSVVGHVITLFRPREGWKKYLAK-----KPKKKVKKDE---- 118

Query: 124 KLDILEFRKKFKR 136
              I+E  +KFK+
Sbjct: 119 --KIIELFEKFKK 129


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.139    0.384 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44398949
Number of Sequences: 2977
Number of extensions: 1535154
Number of successful extensions: 6039
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6035
Number of HSP's gapped (non-prelim): 3
length of query: 139
length of database: 189,106,746
effective HSP length: 55
effective length of query: 84
effective length of database: 156,189,961
effective search space: 13119956724
effective search space used: 13119956724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)