BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1813 (rps19E) DE:SSU ribosomal protein S19E (rps19E)
(150 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75127 ssu ribosomal protein s19e (rps19e) PAB1813 - Pyroco... 311 3e-84
sp|O59041|R19E_PYRHO 30S RIBOSOMAL PROTEIN S19E >gi|7440494|pir|... 309 9e-84
gi|11499651 SSU ribosomal protein S19E (rps19E) [Archaeoglobus f... 212 2e-54
sp|P54057|R19E_METJA 30S RIBOSOMAL PROTEIN S19E >gi|2129264|pir|... 198 2e-50
sp|O27653|R19E_METTH 30S RIBOSOMAL PROTEIN S19E >gi|7440495|pir|... 190 5e-48
sp|Q9YD22|R19E_AERPE 30S RIBOSOMAL PROTEIN S19E >gi|7440497|pir|... 185 3e-46
gb|AAK40685.1| SSU ribosomal protein S19E (rps19E) [Sulfolobus s... 159 2e-38
sp|P24494|R19G_ASCSU 40S RIBOSOMAL PROTEIN S19G (ELIMINATED PROT... 129 2e-29
emb|CAA53231.1| (X75543) ribosomal protein S19 [Ascaris suum] 128 4e-29
sp|P39698|R19S_ASCSU 40S RIBOSOMAL PROTEIN S19S >gi|2119096|pir|... 127 9e-29
emb|CAC11198.1| (AL445063) ribosomal protein S19 related protein... 122 2e-27
sp|Q94613|RS19_MYAAR 40S RIBOSOMAL PROTEIN S19 >gi|7440498|pir||... 117 6e-26
sp|P19952|R19E_HALMA 30S RIBOSOMAL PROTEIN S19E (HS12) (E1.3) >g... 116 1e-25
gb|AAG20178.1| (AE005095) 30S ribosomal protein S19E; Rps19e [Ha... 116 1e-25
sp|O18650|RS19_CAEEL 40S RIBOSOMAL PROTEIN S19 >gi|7507215|pir||... 112 2e-24
gb|AAF56207.1| (AE003745) CG5338 gene product [Drosophila melano... 111 6e-24
gb|AAG13287.1|AF266167_1 (AF266167) ribosomal protein S19 [Gilli... 107 8e-23
sp|P40978|RS19_ORYSA 40S RIBOSOMAL PROTEIN S19 105 3e-22
pir||T50357 40s ribosomal protein s19.1/S19A [imported] - fissio... 105 3e-22
pir||T51530 40S RIBOSOMAL PROTEIN S19-like - Arabidopsis thalian... 104 4e-22
sp|P79016|RS19_SCHPO 40S RIBOSOMAL PROTEIN S19 (S16) >gi|7489961... 104 5e-22
gb|AAF14828.1|AC011664_10 (AC011664) putative 40S ribosomal prot... 104 5e-22
dbj|BAA19213.1| (AB000915) ribosomal protein S16 homolog [Schizo... 104 7e-22
sp|P17074|RS19_RAT 40S RIBOSOMAL PROTEIN S19 >gi|71019|pir||R3RT... 103 1e-21
gi|4506695 ribosomal protein S19 [Homo sapiens] >gi|11525920|ref... 103 1e-21
sp|Q9Y0H3|RS19_MYXGL 40S RIBOSOMAL PROTEIN S19 >gi|4929807|gb|AA... 102 3e-21
sp|Q29308|RS19_PIG 40S RIBOSOMAL PROTEIN S19 101 4e-21
gb|AAF48633.1| (AE003503) RpS19 gene product [Drosophila melanog... 101 6e-21
sp|P39018|RS19_DROME 40S RIBOSOMAL PROTEIN S19 >gi|396531|emb|CA... 100 8e-21
dbj|BAB10379.1| (AB006696) 40S ribosomal protein S19 [Arabidopsi... 100 8e-21
sp|P27073|RS19_EMENI 40S RIBOSOMAL PROTEIN S19 (S16) >gi|83720|p... 96 3e-19
sp|O15631|RS19_ENTHI 40S RIBOSOMAL PROTEIN S19 >gi|2351009|dbj|B... 94 6e-19
gi|6324451 40S ribosomal protein S19A (S16aA) (rp55A) (YS16A); R... 90 2e-17
gi|6324027 Ribosomal protein S19B (rp55B) (S16aB) (YS16B); Rps19... 90 2e-17
emb|CAA10125.1| (AJ012684) 40S ribosomal protein S19 [Cicer arie... 84 7e-16
>pir||F75127 ssu ribosomal protein s19e (rps19e) PAB1813 - Pyrococcus abyssi
(strain Orsay) >gi|5458246|emb|CAB49735.1| (AJ248285)
SSU ribosomal protein S19E (rps19E) [Pyrococcus abyssi]
Length = 150
Score = 311 bits (788), Expect = 3e-84
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR 60
MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR
Sbjct: 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR 60
Query: 61 RVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRV 120
RVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRV
Sbjct: 61 RVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRV 120
Query: 121 ITPKGRSFLDKIATELKKELEEIIPELKKY 150
ITPKGRSFLDKIATELKKELEEIIPELKKY
Sbjct: 121 ITPKGRSFLDKIATELKKELEEIIPELKKY 150
>sp|O59041|R19E_PYRHO 30S RIBOSOMAL PROTEIN S19E >gi|7440494|pir||G71003 probable
ribosomal protein S19 - Pyrococcus horikoshii
>gi|3257748|dbj|BAA30431.1| (AP000006) 150aa long
hypothetical 30S ribosomal protein S19 [Pyrococcus
horikoshii]
Length = 150
Score = 309 bits (784), Expect = 9e-84
Identities = 147/150 (98%), Positives = 150/150 (100%)
Query: 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR 60
MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR
Sbjct: 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR 60
Query: 61 RVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRV 120
RVY+DGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGF+EKVPGKGRV
Sbjct: 61 RVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFIEKVPGKGRV 120
Query: 121 ITPKGRSFLDKIATELKKELEEIIPELKKY 150
+TPKGRSFLDKIATELKKELEEIIPELKKY
Sbjct: 121 VTPKGRSFLDKIATELKKELEEIIPELKKY 150
>gi|11499651 SSU ribosomal protein S19E (rps19E) [Archaeoglobus fulgidus]
>gi|6647731|sp|O28210|R19E_ARCFU 30S RIBOSOMAL PROTEIN
S19E >gi|7440496|pir||D69508 SSU ribosomal protein S19E
(rps19E) homolog - Archaeoglobus fulgidus
>gi|2648466|gb|AAB89186.1| (AE000961) SSU ribosomal
protein S19E (rps19E) [Archaeoglobus fulgidus]
Length = 147
Score = 212 bits (534), Expect = 2e-54
Identities = 102/150 (68%), Positives = 121/150 (80%), Gaps = 3/150 (2%)
Query: 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR 60
MATVYDVP DLL++RVA+RLK++ + PPEWA +VKTG HKER PEQ+DWWY R+ASI R
Sbjct: 1 MATVYDVPADLLIKRVAERLKDM--VAPPEWAKYVKTGVHKERSPEQDDWWYLRLASIFR 58
Query: 61 RVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRV 120
RVY+DGPVGIERLRT+YGGRK RG P +F K G+I+R AL QLE GFV+K +GRV
Sbjct: 59 RVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQLEQLGFVKKT-REGRV 117
Query: 121 ITPKGRSFLDKIATELKKELEEIIPELKKY 150
+TP GRSFLDK+ATELK EL IP L+KY
Sbjct: 118 VTPMGRSFLDKVATELKSELVSEIPALEKY 147
>sp|P54057|R19E_METJA 30S RIBOSOMAL PROTEIN S19E >gi|2129264|pir||D64386 ribosomal
protein S19S - Methanococcus jannaschii
>gi|1591407|gb|AAB98687.1| (U67516) SSU ribosomal
protein S19E [Methanococcus jannaschii]
Length = 148
Score = 198 bits (499), Expect = 2e-50
Identities = 95/150 (63%), Positives = 115/150 (76%), Gaps = 2/150 (1%)
Query: 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR 60
M TVYDVP D L+++ A++LKE+ I PEW FVKTG +ER P+Q+DWWY R ASILR
Sbjct: 1 MVTVYDVPADKLIQKTAEKLKEM-NIGVPEWVDFVKTGVSRERRPDQDDWWYIRCASILR 59
Query: 61 RVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRV 120
++Y+ GPVG+ RLRT YGGRKNRGH PE FYK G+IIRKALQ+LE G VEK P +GRV
Sbjct: 60 KIYIYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKALQELEKLGLVEKTP-EGRV 118
Query: 121 ITPKGRSFLDKIATELKKELEEIIPELKKY 150
+TPKGRSFLD IA E++ E+ IP L KY
Sbjct: 119 VTPKGRSFLDNIAKEVRDEIINEIPALAKY 148
>sp|O27653|R19E_METTH 30S RIBOSOMAL PROTEIN S19E >gi|7440495|pir||H69082 ribosomal
protein S19 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622741|gb|AAB86089.1| (AE000920)
ribosomal protein S19 [Methanobacterium
thermoautotrophicum]
Length = 145
Score = 190 bits (479), Expect = 5e-48
Identities = 88/141 (62%), Positives = 110/141 (77%), Gaps = 1/141 (0%)
Query: 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR 60
M TVYDVP DLL+ RVA+ LK ++K PEW FVKTG HKER PE DWWY R A++LR
Sbjct: 1 MTTVYDVPADLLINRVAEELKNDSKVKSPEWVNFVKTGVHKERRPENPDWWYVRAAALLR 60
Query: 61 RVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRV 120
RVY+DGPVG+ LRT+YGG+K+RG PE+F + G+IIR+ALQQLE +G +++ GRV
Sbjct: 61 RVYIDGPVGVNSLRTHYGGKKDRGSRPEKFRRGSGAIIRRALQQLEESGLIKR-EENGRV 119
Query: 121 ITPKGRSFLDKIATELKKELE 141
ITP+GRSFLDK A E+KKE+E
Sbjct: 120 ITPEGRSFLDKAAAEVKKEVE 140
>sp|Q9YD22|R19E_AERPE 30S RIBOSOMAL PROTEIN S19E >gi|7440497|pir||C72709 probable
ribosomal protein S19 APE1090 - Aeropyrum pernix
(strain K1) >gi|5104760|dbj|BAA80075.1| (AP000060) 153aa
long hypothetical 30S ribosomal protein S19 [Aeropyrum
pernix]
Length = 153
Score = 185 bits (464), Expect = 3e-46
Identities = 91/152 (59%), Positives = 109/152 (70%), Gaps = 2/152 (1%)
Query: 1 MATVYDVPGDLLVERVAQRLKE-IPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASIL 59
M +VP DLL+ RVA++LKE P++KPP WA F KTG HKER P DWWY R ASIL
Sbjct: 1 MVNALEVPADLLIRRVARKLKEKYPQVKPPAWAYFAKTGPHKERPPTDRDWWYVRAASIL 60
Query: 60 RRVYLDG-PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKG 118
R++Y P+GIE RT YGGR+NRG APE F KAGGS+ RK LQQLE AG V KVPG+G
Sbjct: 61 RKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVVKVPGRG 120
Query: 119 RVITPKGRSFLDKIATELKKELEEIIPELKKY 150
R I+P GRS LD A E+ +EL + PEL++Y
Sbjct: 121 RTISPAGRSLLDTTAREIMEELVKTRPELERY 152
>gb|AAK40685.1| SSU ribosomal protein S19E (rps19E) [Sulfolobus solfataricus]
Length = 158
Score = 159 bits (397), Expect = 2e-38
Identities = 81/152 (53%), Positives = 103/152 (67%), Gaps = 2/152 (1%)
Query: 1 MATVYDVPGDLLVERVAQRLKE-IPEIKPPEWAPFVKTGRHKERLPEQ-EDWWYYRVASI 58
M T VP DLL++R+A LKE + + PPEWA KT KER+P+ EDWWY R AS+
Sbjct: 5 MITAEMVPPDLLIKRLAIYLKENVKTVDPPEWALLAKTASFKERVPDNAEDWWYIRAASL 64
Query: 59 LRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKG 118
LR++Y++ +GIE+ RT YGGRK RG PE+F KA G + R QQLE AG V+K+ KG
Sbjct: 65 LRKLYVNSIIGIEKTRTIYGGRKRRGTRPEKFVKAPGHVNRLIFQQLEKAGLVQKIKNKG 124
Query: 119 RVITPKGRSFLDKIATELKKELEEIIPELKKY 150
R ++PKGRS LDK+A E+ KEL E LK Y
Sbjct: 125 RSLSPKGRSLLDKLALEIFKELAENNTSLKVY 156
>sp|P24494|R19G_ASCSU 40S RIBOSOMAL PROTEIN S19G (ELIMINATED PROTEIN NO. 1)
>gi|84483|pir||A39106 ribosomal protein S19.e - common
roundworm >gi|159651|gb|AAA29369.1| (M59417) eliminated
protein No. 1 [Ascaris lumbricoides]
Length = 148
Score = 129 bits (321), Expect = 2e-29
Identities = 65/137 (47%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
+V DV +V+ +A+ LK+ ++K PEW+ K G KE P DW+Y R ASI RR+
Sbjct: 6 SVKDVDQHEIVQHIAKFLKKSGKVKVPEWSDVTKMGISKELAPLNSDWYYVRTASIARRL 65
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP-GKGRVI 121
Y+ P G++ LR YGG K RG P F KA GS+IRKALQ LEA +V+K P G GRV+
Sbjct: 66 YVRSPTGVDALRLVYGGSKRRGVVPNHFAKASGSVIRKALQTLEAIKWVQKHPDGNGRVL 125
Query: 122 TPKGRSFLDKIATELKK 138
T +GR LD+IA+++++
Sbjct: 126 TKQGRKDLDRIASQMRQ 142
>emb|CAA53231.1| (X75543) ribosomal protein S19 [Ascaris suum]
Length = 148
Score = 128 bits (318), Expect = 4e-29
Identities = 64/137 (46%), Positives = 90/137 (64%), Gaps = 1/137 (0%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
+V DV +V+ +A+ LK+ ++K P+W+ K G KE P DW+Y R ASI RR+
Sbjct: 6 SVKDVDQHEIVQHIAKFLKKSGKVKVPDWSDVTKMGISKELAPLNSDWYYVRTASIARRL 65
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP-GKGRVI 121
Y+ P G++ LR YGG K RG P F KA GS+IRKALQ LEA +V+K P G GRV+
Sbjct: 66 YVRSPTGVDALRLVYGGSKRRGVVPNHFAKASGSVIRKALQTLEAIKWVQKHPDGNGRVL 125
Query: 122 TPKGRSFLDKIATELKK 138
T +GR LD+IA+++++
Sbjct: 126 TKQGRKDLDRIASQMRQ 142
>sp|P39698|R19S_ASCSU 40S RIBOSOMAL PROTEIN S19S >gi|2119096|pir||A54581 ribosomal
protein S19.e - pig roundworm >gi|457714|emb|CAA82999.1|
(Z30344) ribosomal protein S19S [Ascaris suum]
Length = 150
Score = 127 bits (315), Expect = 9e-29
Identities = 64/137 (46%), Positives = 88/137 (63%), Gaps = 1/137 (0%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
+V DV +V +A LK+ ++K PEW+ VK G KE P DW+Y R AS+ RR+
Sbjct: 6 SVKDVDQHEIVRYIAGFLKKSGKVKVPEWSDLVKLGITKELAPVDSDWYYVRTASVARRL 65
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP-GKGRVI 121
Y+ P G+ LR YGG K RG P F +A GS+IRKALQ LEA +VEK P G GR++
Sbjct: 66 YIRSPTGVGALRRVYGGNKRRGVTPNHFARASGSVIRKALQTLEAIKWVEKHPDGNGRIL 125
Query: 122 TPKGRSFLDKIATELKK 138
T +GR LD+IA+++++
Sbjct: 126 TKQGRKDLDRIASQMRQ 142
>emb|CAC11198.1| (AL445063) ribosomal protein S19 related protein [Thermoplasma
acidophilum]
Length = 150
Score = 122 bits (304), Expect = 2e-27
Identities = 63/152 (41%), Positives = 100/152 (65%), Gaps = 5/152 (3%)
Query: 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR 60
M +V VP DLL+ V+++LK +I P+W+ +VKTG +E+ P DW Y R A++LR
Sbjct: 1 MVSVKYVPSDLLINYVSEKLKSEKKIAEPDWSKYVKTGISREKSPVNRDWIYVRAAAMLR 60
Query: 61 RVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGG--SIIRKALQQLEAAGFVEKVPGKG 118
++Y++G +GI R+ + YGG+ +RG +R++ A G SIIR +LE AG+V+K P KG
Sbjct: 61 KLYINGYLGISRMSSEYGGKVDRG--SKRYHAAQGSRSIIRYLFHELEKAGYVQKTP-KG 117
Query: 119 RVITPKGRSFLDKIATELKKELEEIIPELKKY 150
R ++P+G S LD + ++ K+L E P +K+
Sbjct: 118 RSLSPQGMSLLDNASKDIIKQLAEKDPAFQKF 149
>sp|Q94613|RS19_MYAAR 40S RIBOSOMAL PROTEIN S19 >gi|7440498|pir||T09674 ribosomal protein
S19 - Mya arenaria >gi|1575469|gb|AAB09536.1| (U63092)
ribosomal protein S19 [Mya arenaria]
Length = 149
Score = 117 bits (291), Expect = 6e-26
Identities = 61/134 (45%), Positives = 77/134 (56%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
+V DV A LK+ ++K PEW FVKTG KE P + DW++ R ASI R +
Sbjct: 4 SVKDVSSHEFTRAFAAFLKKSGKMKVPEWTDFVKTGMFKELSPYEPDWYFIRAASICRHL 63
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
Y+ P GI YGGR+ RG AP F KA GSI R+ LQ LE VEK P GR +T
Sbjct: 64 YIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKDPNGGRRLT 123
Query: 123 PKGRSFLDKIATEL 136
+GR LD+IA ++
Sbjct: 124 SQGRRDLDRIAAQI 137
>sp|P19952|R19E_HALMA 30S RIBOSOMAL PROTEIN S19E (HS12) (E1.3) >gi|71021|pir||R3HS12
ribosomal protein S19.eR [validated] - Haloarcula
marismortui
Length = 147
Score = 116 bits (289), Expect = 1e-25
Identities = 69/153 (45%), Positives = 91/153 (59%), Gaps = 11/153 (7%)
Query: 2 ATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRR 61
AT+YDVP + L+E + + L + +WA F KTG +E PEQED+W R AS+LR+
Sbjct: 1 ATLYDVPPEELIEALTETLAD------EDWAEFTKTGVDRELPPEQEDFWTRRAASLLRK 54
Query: 62 VYLDGPVGIERLRTYYG----GRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGK 117
V +DGPVG+ LR+ YG G P + K G+IIR ALQQLE AG+VE
Sbjct: 55 VAVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQLEDAGYVETSEND 114
Query: 118 GRVITPKGRSFLDKIATELKKELEEIIPELKKY 150
GR +T GRS LD A +L EL+ EL++Y
Sbjct: 115 GRRVTGDGRSLLDDTAGDLLTELDR-PEELERY 146
>gb|AAG20178.1| (AE005095) 30S ribosomal protein S19E; Rps19e [Halobacterium sp.
NRC-1]
Length = 151
Score = 116 bits (288), Expect = 1e-25
Identities = 64/154 (41%), Positives = 93/154 (59%), Gaps = 8/154 (5%)
Query: 1 MATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILR 60
MAT+YD P D L++ +A L+ + P+WA + KTG +E PEQ D+W R AS+LR
Sbjct: 1 MATLYDAPVDELIDELAADLET--RLDEPDWANYAKTGAGRELPPEQSDFWATRAASLLR 58
Query: 61 RVYLDGPVGIERLRTYYGGRKNRGH----APERFYKAGGSIIRKALQQLEAAGFVEKVPG 116
+V +DGP+G++RL YG + + AP +I+R LQQLEA G VE+
Sbjct: 59 KVAIDGPIGVKRLSEAYGSTTSGSNRYVVAPSTTTAGSRNIVRTILQQLEAEGLVEQQHD 118
Query: 117 KGRVITPKGRSFLDKIATELKKELEEIIPELKKY 150
GRV+T GRS LD+ A ++ + L+ PEL++Y
Sbjct: 119 HGRVVTGDGRSLLDETAGDVIESLDR--PELERY 150
>sp|O18650|RS19_CAEEL 40S RIBOSOMAL PROTEIN S19 >gi|7507215|pir||T24535 ribosomal protein
S19 - Caenorhabditis elegans >gi|7511636|pir||T42212
ribosomal protein S19 - Caenorhabditis elegans
>gi|2353331|gb|AAB69445.1| (AF016512) ribosomal protein
S19 [Caenorhabditis elegans] >gi|3924845|emb|CAB04689.1|
(Z81586) predicted using Genefinder~contains similarity
to Pfam domain: PF01090 (Ribosomal protein S19e),
Score=277.7, E-value=4.8e-80, N=1~cDNA EST yk637d2.3
comes from this gene~cDNA EST yk637d2.5 comes from this
gene~cDNA EST yk211d8.3 comes from th>
Length = 146
Score = 112 bits (277), Expect = 2e-24
Identities = 59/136 (43%), Positives = 83/136 (60%), Gaps = 2/136 (1%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
++ DV + +A LK+ ++K PEW+ VK G +KE P DW+Y R AS+ R +
Sbjct: 6 SIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHL 65
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP-GKGRVI 121
Y P GI + YGG K RG AP F + G+ +RKA+QQLE +VEK P GKGR++
Sbjct: 66 YFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKGRIL 124
Query: 122 TPKGRSFLDKIATELK 137
+ +GR LD+IAT L+
Sbjct: 125 SKQGRKDLDRIATSLR 140
>gb|AAF56207.1| (AE003745) CG5338 gene product [Drosophila melanogaster]
Length = 155
Score = 111 bits (274), Expect = 6e-24
Identities = 57/140 (40%), Positives = 83/140 (58%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV ++ +L + +A LK+ +I PE A ++KTG+ KE P +DW+Y R ASI+R +
Sbjct: 5 TVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASIMRHL 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL P G+ Y GRK G P + ++ IRKALQ LEAA VE+ P GR +T
Sbjct: 65 YLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGGRKLT 124
Query: 123 PKGRSFLDKIATELKKELEE 142
P+G+ LD+IA ++ + E
Sbjct: 125 PQGQRNLDRIANKIVAKQRE 144
>gb|AAG13287.1|AF266167_1 (AF266167) ribosomal protein S19 [Gillichthys mirabilis]
Length = 147
Score = 107 bits (264), Expect = 8e-23
Identities = 54/142 (38%), Positives = 79/142 (55%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV V +A LK+ ++K P+W VK GRHKE P E+W+Y R AS +R +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPDWVDLVKLGRHKELAPSDENWFYIRAASTVRHL 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL G G+ + YGGR+ G P + + ++ RK LQ LE +EK P GR +T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDPNGGRRLT 124
Query: 123 PKGRSFLDKIATELKKELEEII 144
+G LD+IA ++ ++I+
Sbjct: 125 AQGTRDLDRIAGQVSAASKKIV 146
>sp|P40978|RS19_ORYSA 40S RIBOSOMAL PROTEIN S19
Length = 146
Score = 105 bits (259), Expect = 3e-22
Identities = 54/131 (41%), Positives = 75/131 (57%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV V+ + LK +++ PEW VKT R KE P DW+Y R ASI R++
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL +G+ + YGGR+ G P F K+ G+I R LQQL+ G ++ P GR+IT
Sbjct: 68 YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127
Query: 123 PKGRSFLDKIA 133
+GR LD++A
Sbjct: 128 SQGRRDLDQVA 138
>pir||T50357 40s ribosomal protein s19.1/S19A [imported] - fission yeast
(Schizosaccharomyces pombe) >gi|7106078|emb|CAB76049.1|
(AL157918) 40s ribosomal protein s19.1/S19A
[Schizosaccharomyces pombe]
Length = 144
Score = 105 bits (259), Expect = 3e-22
Identities = 57/140 (40%), Positives = 74/140 (52%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
+V DV + A LK ++ P+W VKTG HKE P DW+Y R A+I R +
Sbjct: 5 SVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHI 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL VG+ RL YGG NRG P GS+ RK +Q LE G +EK GR I+
Sbjct: 65 YLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRIS 124
Query: 123 PKGRSFLDKIATELKKELEE 142
+G+ LD+IA L +E E
Sbjct: 125 QQGQRDLDRIAYSLLEEESE 144
>pir||T51530 40S RIBOSOMAL PROTEIN S19-like - Arabidopsis thaliana
>gi|9755807|emb|CAC01751.1| (AL391143) 40S RIBOSOMAL
PROTEIN S19-like [Arabidopsis thaliana]
Length = 143
Score = 104 bits (258), Expect = 4e-22
Identities = 58/137 (42%), Positives = 72/137 (52%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV V+ A LK +I+ P W VKTGR KE P DW+Y R AS+ R++
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL G +G+ R YGG K G P F K+ G I R LQQLE VE GR IT
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRIT 125
Query: 123 PKGRSFLDKIATELKKE 139
G+ LD++A + E
Sbjct: 126 SSGQRDLDQVAGRIAAE 142
>sp|P79016|RS19_SCHPO 40S RIBOSOMAL PROTEIN S19 (S16) >gi|7489961|pir||T40595 40s
ribosomal protein - fission yeast (Schizosaccharomyces
pombe) >gi|3136024|emb|CAA19044.1| (AL023587) 40s
ribosomal protein s19 [Schizosaccharomyces pombe]
Length = 143
Score = 104 bits (257), Expect = 5e-22
Identities = 56/139 (40%), Positives = 74/139 (52%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
+V DV + A LK ++ P+W VKTG HKE P DW+Y R A+I R +
Sbjct: 5 SVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHI 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL VG+ RL YGG NRG P GS+ RK +Q LE G +EK GR I+
Sbjct: 65 YLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRIS 124
Query: 123 PKGRSFLDKIATELKKELE 141
+G+ LD+IA L ++ E
Sbjct: 125 QQGQRDLDRIAYSLLEDEE 143
>gb|AAF14828.1|AC011664_10 (AC011664) putative 40S ribosomal protein S19 [Arabidopsis
thaliana]
Length = 143
Score = 104 bits (257), Expect = 5e-22
Identities = 58/137 (42%), Positives = 72/137 (52%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV V+ A LK +I+ P W VKTG+ KE P DW+Y R AS+ R+V
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL G +G+ R YGG K G P F K+ G I R LQQLE VE GR IT
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRIT 125
Query: 123 PKGRSFLDKIATELKKE 139
G+ LD++A + E
Sbjct: 126 SSGQRDLDQVAGRIAVE 142
>dbj|BAA19213.1| (AB000915) ribosomal protein S16 homolog [Schizosaccharomyces
pombe]
Length = 137
Score = 104 bits (256), Expect = 7e-22
Identities = 56/137 (40%), Positives = 72/137 (51%)
Query: 6 DVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLD 65
DV + A LK ++ P+W VKTG HKE P DW+Y R A+I R +YL
Sbjct: 1 DVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLR 60
Query: 66 GPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKG 125
VG+ RL YGG NRG P GS+ RK +Q LE G +EK GR I+ +G
Sbjct: 61 KQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQG 120
Query: 126 RSFLDKIATELKKELEE 142
+ LD+IA L +E E
Sbjct: 121 QRDLDRIAYSLLEEESE 137
>sp|P17074|RS19_RAT 40S RIBOSOMAL PROTEIN S19 >gi|71019|pir||R3RT19 ribosomal protein
S19, cytosolic [validated] - rat
>gi|57716|emb|CAA36003.1| (X51707) ribosomal protein S19
(AA 1-145) [Rattus rattus]
>gi|7648818|gb|AAF65683.1|AF216207_1 (AF216207)
ribosomal protein S19 [Mus musculus]
Length = 145
Score = 103 bits (254), Expect = 1e-21
Identities = 54/134 (40%), Positives = 74/134 (54%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV V +A LK+ ++K PEW VK +HKE P E+W+Y R AS R +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHL 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL G G+ + YGGR+ G P F + S+ R+ LQ LE VEK GR +T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLT 124
Query: 123 PKGRSFLDKIATEL 136
P+G+ LD+IA ++
Sbjct: 125 PQGQRDLDRIAGQV 138
>gi|4506695 ribosomal protein S19 [Homo sapiens] >gi|11525920|ref|XP_008876.1|
ribosomal protein S19 [Homo sapiens]
>gi|730640|sp|P39019|RS19_HUMAN 40S RIBOSOMAL PROTEIN
S19 >gi|2119097|pir||I52692 ribosomal protein S19,
cytosolic - human >gi|337733|gb|AAA89070.1| (M81757) S19
ribosomal protein [Homo sapiens]
>gi|4210954|gb|AAD13668.1| (AF092907) ribosomal protein
S19; RPS19 [Homo sapiens]
Length = 145
Score = 103 bits (254), Expect = 1e-21
Identities = 54/134 (40%), Positives = 74/134 (54%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV V +A LK+ ++K PEW VK +HKE P E+W+Y R AS R +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAKHKELAPYDENWFYTRAASTARHL 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL G G+ + YGGR+ G P F + S+ R+ LQ LE VEK GR +T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLT 124
Query: 123 PKGRSFLDKIATEL 136
P+G+ LD+IA ++
Sbjct: 125 PQGQRDLDRIAGQV 138
>sp|Q9Y0H3|RS19_MYXGL 40S RIBOSOMAL PROTEIN S19 >gi|4929807|gb|AAD34164.1|AF153049_1
(AF153049) 40S ribosomal protein S19 [Myxine glutinosa]
Length = 145
Score = 102 bits (251), Expect = 3e-21
Identities = 51/134 (38%), Positives = 75/134 (55%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV V+ +A K+ ++K P+W VK G+HKE P DW+Y R AS+ R +
Sbjct: 5 TVKDVNQQEFVKALAAFFKKSGKLKKPDWVDTVKLGKHKELAPFDIDWYYIRTASVARHL 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
Y+ G VG+ + YGGR+ G P + + ++ RK LQ LE VEK P GR +T
Sbjct: 65 YMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKDPNGGRRLT 124
Query: 123 PKGRSFLDKIATEL 136
G+ +D+IA ++
Sbjct: 125 SIGQRDMDRIAGQV 138
>sp|Q29308|RS19_PIG 40S RIBOSOMAL PROTEIN S19
Length = 136
Score = 101 bits (250), Expect = 4e-21
Identities = 54/131 (41%), Positives = 71/131 (53%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV V +A LK+ ++K PEW VK HKE P E+W+Y R AS R +
Sbjct: 5 TVKDVNQQEFVRALAAFLKKSGKLKVPEWVDTVKLAXHKELAPYDENWFYTRAASTARHL 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL G G+ + YGGR+ G P F + S+ R+ LQ LE VEK GR +T
Sbjct: 65 YLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKDQDGGRKLT 124
Query: 123 PKGRSFLDKIA 133
P+G+ LD+IA
Sbjct: 125 PQGQRDLDRIA 135
>gb|AAF48633.1| (AE003503) RpS19 gene product [Drosophila melanogaster]
>gi|7648816|gb|AAF65682.1|AF216206_1 (AF216206)
ribosomal protein S19 [Drosophila melanogaster]
Length = 156
Score = 101 bits (248), Expect = 6e-21
Identities = 55/134 (41%), Positives = 74/134 (55%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV D+ + + VA LK+ ++K P+ VKT + KE P DW+Y R ASILR +
Sbjct: 5 TVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASILRHL 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
Y P G+ + YGGRK G P F +A RKALQ LE A VEK P GR ++
Sbjct: 65 YHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLS 124
Query: 123 PKGRSFLDKIATEL 136
G+ LD+IA ++
Sbjct: 125 SIGQRDLDRIANQI 138
>sp|P39018|RS19_DROME 40S RIBOSOMAL PROTEIN S19 >gi|396531|emb|CAA51677.1| (X73153)
ribosomal protein S19 [Drosophila melanogaster]
Length = 156
Score = 100 bits (247), Expect = 8e-21
Identities = 54/134 (40%), Positives = 74/134 (54%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV D+ + + VA LK+ ++K P+ +KT + KE P DW+Y R ASILR +
Sbjct: 5 TVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIIKTAKFKELAPYDPDWFYVRCASILRHL 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
Y P G+ + YGGRK G P F +A RKALQ LE A VEK P GR ++
Sbjct: 65 YHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGGRKLS 124
Query: 123 PKGRSFLDKIATEL 136
G+ LD+IA ++
Sbjct: 125 SIGQRDLDRIANQI 138
>dbj|BAB10379.1| (AB006696) 40S ribosomal protein S19 [Arabidopsis thaliana]
Length = 143
Score = 100 bits (247), Expect = 8e-21
Identities = 54/131 (41%), Positives = 70/131 (53%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV V+ A LK +I+ P W VKTG+ KE P DW+Y R AS+ R+V
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVIT 122
YL G +G+ R YGG K G P F K+ G + R LQQL+ V+ GR IT
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKIT 125
Query: 123 PKGRSFLDKIA 133
G+ LD++A
Sbjct: 126 SSGQRDLDQVA 136
>sp|P27073|RS19_EMENI 40S RIBOSOMAL PROTEIN S19 (S16) >gi|83720|pir||JQ1349 ribosomal
protein S19.e, cytosolic - Emericella nidulans
>gi|168088|gb|AAA33322.1| (M65259) ribosomal protein S16
[Aspergillus nidulans]
Length = 148
Score = 95.6 bits (234), Expect = 3e-19
Identities = 56/141 (39%), Positives = 72/141 (50%), Gaps = 1/141 (0%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRV 62
TV DV + A LK ++ P W VKT E P+ DW+Y R A++ R +
Sbjct: 5 TVRDVDAQKFIVAYAAFLKRQGKLPIPGWVDTVKTSASNELPPQDADWYYVRAAAVARHI 64
Query: 63 YLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGK-GRVI 121
YL VG+ RLR +G KNRG P A G++ RK LQ LE G +E+ K GR I
Sbjct: 65 YLRKTVGVGRLRKVHGSTKNRGSRPAHHVDASGAVDRKVLQSLEKIGVLEQDEEKGGRRI 124
Query: 122 TPKGRSFLDKIATELKKELEE 142
T G+ LD+IA E EE
Sbjct: 125 TQSGQRDLDRIAKTTVDEEEE 145
>sp|O15631|RS19_ENTHI 40S RIBOSOMAL PROTEIN S19 >gi|2351009|dbj|BAA22027.1| (AB002796)
ribosomal protein S19 [Entamoeba histolytica]
Length = 148
Score = 94.4 bits (231), Expect = 6e-19
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Query: 2 ATVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRR 61
+ + DV ++ A+ LK+ +++ PEW VKTG KE P DW Y R A+I R+
Sbjct: 5 SNIKDVVAIDFIKAYAEHLKKSGKLEIPEWVDTVKTGMCKELAPLNPDWIYIRAAAIARK 64
Query: 62 VYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVI 121
VYL+ +G+ LR YG + N+ + P G + R LQQLE G V K+ GR +
Sbjct: 65 VYLNNGIGVMALRRAYGDQYNKHYYPSHRTLGSGKVNRYILQQLEKMGIVGKIQ-SGRSL 123
Query: 122 TPKGRSFLDKIATELKKELE 141
T +GR +DKIA++ + ++
Sbjct: 124 TKEGRKDMDKIASKFIRNMK 143
>gi|6324451 40S ribosomal protein S19A (S16aA) (rp55A) (YS16A); Rps19ap
[Saccharomyces cerevisiae]
>gi|133864|sp|P07280|R19A_YEAST 40S RIBOSOMAL PROTEIN
S19-A (S16A) (YS16) (RP55) (YP45) >gi|71020|pir||R3BY9E
ribosomal protein S19.e.A, cytosolic - yeast
(Saccharomyces cerevisiae) >gi|4369|emb|CAA26482.1|
(X02635) S16A (rp55) [Saccharomyces cerevisiae]
>gi|1419999|emb|CAA99140.1| (Z74863) ORF YOL121c
[Saccharomyces cerevisiae] >gi|1550724|emb|CAA64549.1|
(X95258) ribosomal protein S19.e [Saccharomyces
cerevisiae]
Length = 144
Score = 89.7 bits (219), Expect = 2e-17
Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQ-EDWWYYRVASILRR 61
+V DV + A L+ +++ P + VKT E P+ E W+Y R AS+ R
Sbjct: 5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARH 64
Query: 62 VYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVI 121
+Y+ VG+ +L YGG K+RG P + A GSI RK LQ LE G VE P GR I
Sbjct: 65 IYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRI 124
Query: 122 TPKGRSFLDKIATELKKELE 141
+ G+ LD+IA + +E E
Sbjct: 125 SENGQRDLDRIAAQTLEEDE 144
>gi|6324027 Ribosomal protein S19B (rp55B) (S16aB) (YS16B); Rps19bp
[Saccharomyces cerevisiae]
>gi|133858|sp|P07281|R19B_YEAST 40S RIBOSOMAL PROTEIN
S19-B (S16B) (YS16) (RP55) >gi|2119095|pir||S60398
ribosomal protein S19.e.B, cytosolic - yeast
(Saccharomyces cerevisiae) >gi|4405|emb|CAA25575.1|
(X01100) S16A (rp 55) [Saccharomyces pastorianus]
>gi|1050858|gb|AAC49096.1| (U23084) ribosomal protein
Rp55ap [Saccharomyces cerevisiae]
>gi|1302398|emb|CAA96220.1| (Z71578) ORF YNL302c
[Saccharomyces cerevisiae]
Length = 144
Score = 89.7 bits (219), Expect = 2e-17
Identities = 53/140 (37%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 3 TVYDVPGDLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQ-EDWWYYRVASILRR 61
+V DV + A L+ +++ P + VKT E P+ E W+Y R AS+ R
Sbjct: 5 SVRDVAAQDFINAYASFLQRQGKLEVPGYVDIVKTSSGNEMPPQDAEGWFYKRAASVARH 64
Query: 62 VYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVI 121
+Y+ VG+ +L YGG K+RG P + A GSI RK LQ LE G VE P GR I
Sbjct: 65 IYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRI 124
Query: 122 TPKGRSFLDKIATELKKELE 141
+ G+ LD+IA + +E E
Sbjct: 125 SENGQRDLDRIAAQTLEEDE 144
>emb|CAA10125.1| (AJ012684) 40S ribosomal protein S19 [Cicer arietinum]
Length = 105
Score = 84.3 bits (205), Expect = 7e-16
Identities = 42/98 (42%), Positives = 55/98 (55%)
Query: 36 KTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGG 95
KT R KE P DW+Y R AS+ R++YL G +G+ + YGG + G P F K+ G
Sbjct: 1 KTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSG 60
Query: 96 SIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIA 133
SI R LQQL+ +E GR IT GR LD++A
Sbjct: 61 SIARHILQQLQNMNIIEMDTKGGRKITSSGRRDLDQVA 98
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.141 0.424
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63294694
Number of Sequences: 2977
Number of extensions: 2729140
Number of successful extensions: 6743
Number of sequences better than 1.0e-10: 35
Number of HSP's better than 0.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6689
Number of HSP's gapped (non-prelim): 35
length of query: 150
length of database: 189,106,746
effective HSP length: 50
effective length of query: 100
effective length of database: 159,182,396
effective search space: 15918239600
effective search space used: 15918239600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)