BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1814 (PAB1814) DE:Hypothetical protein
         (197 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75127 hypothetical protein PAB1814 - Pyrococcus abyssi (st...   388  e-107
pir||H71003 hypothetical protein PH1326 - Pyrococcus horikoshii ...   274  6e-73

>pir||E75127 hypothetical protein PAB1814 - Pyrococcus abyssi (strain Orsay)
           >gi|5458245|emb|CAB49734.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 197
           
 Score =  388 bits (985), Expect = e-107
 Identities = 197/197 (100%), Positives = 197/197 (100%)

Query: 1   MSLETLFPEEGKVYECLLITRSNVTPIGIVRIGDSLKFKIFEGKSFLDLEESSYAIVQVV 60
           MSLETLFPEEGKVYECLLITRSNVTPIGIVRIGDSLKFKIFEGKSFLDLEESSYAIVQVV
Sbjct: 1   MSLETLFPEEGKVYECLLITRSNVTPIGIVRIGDSLKFKIFEGKSFLDLEESSYAIVQVV 60

Query: 61  DDVELLASLAFNFFPELELEDAVRVPLKKVKGYPWVEGVTNCKEILVKDELGESRAKACS 120
           DDVELLASLAFNFFPELELEDAVRVPLKKVKGYPWVEGVTNCKEILVKDELGESRAKACS
Sbjct: 61  DDVELLASLAFNFFPELELEDAVRVPLKKVKGYPWVEGVTNCKEILVKDELGESRAKACS 120

Query: 121 LKPVYVGIVKRILKPISRADNYLLELAVLGTRILVARNRGINVRELEEEAEKVYMMYKKL 180
           LKPVYVGIVKRILKPISRADNYLLELAVLGTRILVARNRGINVRELEEEAEKVYMMYKKL
Sbjct: 121 LKPVYVGIVKRILKPISRADNYLLELAVLGTRILVARNRGINVRELEEEAEKVYMMYKKL 180

Query: 181 GGNSKIGEKIYELIKRV 197
           GGNSKIGEKIYELIKRV
Sbjct: 181 GGNSKIGEKIYELIKRV 197


>pir||H71003 hypothetical protein PH1326 - Pyrococcus horikoshii
           >gi|3257749|dbj|BAA30432.1| (AP000006) 197aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 197
           
 Score =  274 bits (693), Expect = 6e-73
 Identities = 129/196 (65%), Positives = 165/196 (83%)

Query: 1   MSLETLFPEEGKVYECLLITRSNVTPIGIVRIGDSLKFKIFEGKSFLDLEESSYAIVQVV 60
           M+L+ LFPEEGKVYEC+LIT+SN+TPIGIVR+GD LKFKIFEG+SF DL  S++AIVQ+V
Sbjct: 1   MNLKELFPEEGKVYECILITKSNLTPIGIVRVGDFLKFKIFEGRSFEDLSISNFAIVQIV 60

Query: 61  DDVELLASLAFNFFPELELEDAVRVPLKKVKGYPWVEGVTNCKEILVKDELGESRAKACS 120
           DD+ELL SLAFN FP LE E A++VPLKK+KGYPWVEG  NC + +++DE+G+S AK C+
Sbjct: 61  DDIELLVSLAFNIFPNLEFEPALKVPLKKIKGYPWVEGRVNCHKEVIEDEVGKSLAKNCT 120

Query: 121 LKPVYVGIVKRILKPISRADNYLLELAVLGTRILVARNRGINVRELEEEAEKVYMMYKKL 180
           L P+Y+G+VK++ +PISRADNYLLE A++ TRILVAR RG+ +  L ++AE+ Y MY +L
Sbjct: 121 LTPIYIGMVKKLPRPISRADNYLLEFAIIATRILVARKRGLRIDGLLKKAEEAYEMYIRL 180

Query: 181 GGNSKIGEKIYELIKR 196
           GG SKI E+I ELIKR
Sbjct: 181 GGKSKIAEEINELIKR 196


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.140    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68086188
Number of Sequences: 2977
Number of extensions: 2686317
Number of successful extensions: 6140
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6138
Number of HSP's gapped (non-prelim): 2
length of query: 197
length of database: 189,106,746
effective HSP length: 56
effective length of query: 141
effective length of database: 155,591,474
effective search space: 21938397834
effective search space used: 21938397834
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)