BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1817 (lhr-1) DE:large helicase-related protein (lhr-1)
(912 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75127 large helicase-related protein (lhr-1) PAB1817 - Pyr... 1805 0.0
pir||C71004 probable ATP-dependent helicase - Pyrococcus horikos... 1359 0.0
gi|11498749 large helicase-related protein (lhr-1) [Archaeoglobu... 610 e-173
gb|AAG19610.1| (AE005050) ATP-dependent helicase; HelA [Halobact... 551 e-155
gb|AAK40723.1| ATP-dependent helicase [Sulfolobus solfataricus] 485 e-135
emb|CAC11967.1| (AL445065) Large helicase related protein [Therm... 478 e-134
pir||G72526 hypothetical protein APE2188 - Aeropyrum pernix (str... 441 e-122
pir||D75091 large helicase-related protein (lhr-2) PAB0744 - Pyr... 348 1e-94
sp|Q57742|HELX_METJA PUTATIVE ATP-DEPENDENT HELICASE MJ0294 >gi|... 348 1e-94
pir||C72521 hypothetical protein APE2144 - Aeropyrum pernix (str... 344 3e-93
emb|CAC11727.1| (AL445064) hypothetical protein [Thermoplasma ac... 335 1e-90
sp|O27830|HELX_METTH PUTATIVE ATP-DEPENDENT HELICASE MTH1802 >gi... 329 1e-88
gi|11500031 large helicase-related protein (lhr-2) [Archaeoglobu... 319 8e-86
gb|AAK41239.1| ATP-dependent helicase [Sulfolobus solfataricus] 319 1e-85
gb|AAK40467.1| ATP-dependent helicase [Sulfolobus solfataricus] 315 1e-84
sp|P95949|HELX_SULSO PUTATIVE ATP-DEPENDENT HELICASE C04010 >gi|... 315 1e-84
pir||A69140 ATP-dependent helicase - Methanobacterium thermoauto... 262 1e-68
pir||F83237 probable ATP-dependent DNA helicase PA3272 [imported... 257 5e-67
sp|P30015|LHR_ECOLI PROBABLE ATP-DEPENDENT HELICASE LHR (LARGE H... 249 1e-64
pir||A70982 probable ATP-dependent helicase lhr - Mycobacterium ... 238 3e-61
pir||T35694 ATP dependent DNA helicase - Streptomyces coelicolor... 233 5e-60
pir||G71051 probable ATP-dependent helicase LHR - Pyrococcus hor... 194 5e-48
pir||T35049 probable ATP-dependent helicase - Streptomyces coeli... 187 4e-46
gb|AAK40384.1| ATP-dependent helicase [Sulfolobus solfataricus] 145 3e-33
gi|11499982 ATP-dependent RNA helicase, putative [Archaeoglobus ... 125 2e-27
pir||E71073 hypothetical protein PH1280 - Pyrococcus horikoshii ... 122 1e-26
pir||F69164 ATP-dependent RNA helicase homolog MTH492 - Methanob... 119 1e-25
pir||F71092 ATP-dependent RNA helicase homolog PH1003 - Pyrococc... 119 2e-25
pir||B75135 DNA helicase related protein PAB0592 - Pyrococcus ab... 117 6e-25
pir||T43854 helicase [imported] - Pyrococcus furiosus >gi|337450... 115 3e-24
sp|P50830|YPRA_BACSU HYPOTHETICAL HELICASE IN PONA-COTD INTERGEN... 114 5e-24
pir||E64496 ATP-dependent RNA helicase homolog MJ1574 - Methanoc... 113 1e-23
gi|11500032 SKI2-family helicase [Archaeoglobus fulgidus] 109 1e-22
pir||B75073 ATP-dependent RNA helicase homolog PAB1722 - Pyrococ... 109 1e-22
gb|AAK42601.1| DNA helicase related protein [Sulfolobus solfatar... 105 3e-21
pir||H82418 ATP-dependent RNA helicase, DEAD box family VCA0768 ... 101 5e-20
dbj|BAB05483.1| (AP001513) ATP-dependent RNA helicase [Bacillus ... 100 1e-19
dbj|BAA34994.1| (AB017003) DjVLGB [Dugesia japonica] 98 4e-19
sp|P34668|YO12_CAEEL PUTATIVE ATP-DEPENDENT RNA HELICASE ZK686.2... 98 6e-19
dbj|BAA91812.1| (AK001652) unnamed protein product [Homo sapiens] 96 2e-18
pir||S01676 ATP-dependent RNA helicase homolog - fruit fly (Dros... 94 5e-18
pir||A31922 ATP-dependent RNA helicase homolog - fruit fly (Dros... 94 5e-18
gb|AAF44917.1|AE003406_122 (AE003416) symbol=vas; synonym=BG:DS0... 94 5e-18
pir||E72775 probable helicase APE0191 - Aeropyrum pernix (strain... 94 5e-18
pir||T38420 probable dna helicases - fission yeast (Schizosaccha... 94 9e-18
pir||F70354 ATP-dependent RNA helicase DeaD - Aquifex aeolicus >... 92 2e-17
prf||1413329A gene vasa [Drosophila melanogaster] 91 4e-17
pir||T39188 probable U5 snRNP-specific 200kd protein - fission y... 91 4e-17
gb|AAF58994.1| (AE003834) Dbp45A gene product [Drosophila melano... 91 6e-17
emb|CAB90153.1| (AL355013) putative atp-dependent RNA helicase [... 90 1e-16
gi|6321020 putative ATP-dependent RNA helicase; Brr2p [Saccharom... 90 1e-16
pir||H64474 hypothetical protein MJ1401 - Methanococcus jannasch... 90 1e-16
pir||D82203 ATP-dependent RNA helicase RhlE VC1407 [imported] - ... 89 2e-16
gi|9755332 C4 zinc finger DNA-binding protein of low sequence sp... 89 3e-16
gi|6320497 Ydr291wp [Saccharomyces cerevisiae] >gi|2131417|pir||... 89 3e-16
pir||A82872 ATP-dependent RNA helicase UU582 [imported] - Ureapl... 88 5e-16
gi|6321360 ATP-dependent RNA helicase CA3 of the DEAD/DEAH box f... 87 8e-16
gb|AAF48446.1| (AE003498) CG6227 gene product [Drosophila melano... 87 1e-15
pir||T36671 probable helicase - Streptomyces coelicolor >gi|4539... 86 1e-15
gb|AAC00620.1| (AC002291) Similar ATP-dependent RNA Helicase [Ar... 86 2e-15
pir||D69772 ATP-dependent RNA helicase homolog ydbR - Bacillus s... 85 2e-15
gb|AAF60892.1| (AC024876) contains similarity to SW:RPB1_CRIGR [... 85 3e-15
pir||H70414 conserved hypothetical protein aq_1328 - Aquifex aeo... 85 4e-15
dbj|BAB05104.1| (AP001511) ATP-dependent RNA helicase [Bacillus ... 84 6e-15
sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG) (RVLG) >gi|... 84 7e-15
pir||F82295 ATP-dependent RNA helicase SrmB VC0660 [imported] - ... 83 1e-14
pir||T00936 ATP-dependent RNA helicase homolog T24P15.18 - Arabi... 83 1e-14
pir||E82488 ATP-dependent RNA helicase RhlE VCA0204 [imported] -... 83 1e-14
pir||T40504 atp-dependent, dead box, rna helicase - fission yeas... 83 2e-14
pir||T27149 hypothetical protein Y54E2A.6 - Caenorhabditis elega... 82 2e-14
pir||C64440 DNA repair protein RAD24 homolog (intein-containing)... 82 2e-14
pir||I51235 DEAD box protein - African clawed frog (fragment) >g... 82 2e-14
dbj|BAB14698.1| (AK023840) unnamed protein product [Homo sapiens] 82 3e-14
sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A-7 (EIF-4A-7... 82 4e-14
gb|AAB03337.1| (U60194) RNA helicase GLH-2 [Caenorhabditis elega... 82 4e-14
gb|AAF55204.1| (AE003709) CG5205 gene product [Drosophila melano... 81 5e-14
gb|AAB64289.1| (AF007580) translation initiation factor [Zea mays] 81 5e-14
gb|AAB67607.1| (U73459) translational initiation factor eIF-4A [... 81 5e-14
dbj|BAB14906.1| (AK024391) unnamed protein product [Homo sapiens] 81 6e-14
emb|CAA94089.1| (Z70200) U5 snRNP-specific 200kD protein [Homo s... 81 6e-14
sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (E... 81 6e-14
pir||S52019 translation initiation factor eIF-4A.7 - common tobacco 81 6e-14
gb|AAF39890.1| (AC006661) contains similarity to Pfam families P... 81 6e-14
gb|AAF53963.1| (AE003669) CG9253 gene product [Drosophila melano... 81 6e-14
gb|AAA34666.1| (L00683) ATP-dependent RNA helicase [Saccharomyce... 80 8e-14
gi|6323021 putative ATP dependent RNA helicase; Drs1p [Saccharom... 80 8e-14
pir||C69813 RNA helicase homolog yfmL - Bacillus subtilis >gi|24... 80 8e-14
pir||B75191 probable ATP-dependent RNA helicase PAB2313 - Pyroco... 80 8e-14
gb|AAK42222.1| ATP-dependent RNA helicase [Sulfolobus solfataricus] 80 1e-13
sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A-10 (EIF-4A-... 80 1e-13
sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A-14 (EIF-4A-... 80 1e-13
sp|Q09719|YA47_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C31A2.0... 80 1e-13
emb|CAA11679.1| (AJ223948) RNA helicase [Homo sapiens] 80 1e-13
pir||T39411 RNA helicase - fission yeast (Schizosaccharomyces po... 80 1e-13
sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669 ... 79 2e-13
pir||S52023 translation initiation factor eIF-4A.14 - common tob... 79 2e-13
pir||T22942 hypothetical protein F58G11.2 - Caenorhabditis elega... 79 2e-13
gb|AAD20136.1| (AF091502) autoaggregation-mediating protein [Lac... 79 2e-13
sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2... 79 2e-13
gi|11497691 ATP-dependent RNA helicase, putative [Archaeoglobus ... 79 2e-13
pir||A71223 hypothetical protein PH0044 - Pyrococcus horikoshii ... 78 3e-13
gb|AAG20465.1| (AE005119) DNA repair protein; Rad24b [Halobacter... 78 3e-13
pir||S52020 translation initiation factor eIF-4A.15 - common tob... 78 4e-13
pir||C69187 conserved hypothetical protein MTH656 - Methanobacte... 78 4e-13
pir||S52018 translation initiation factor eIF-4A.11 - common tob... 78 6e-13
gb|AAG12945.1|AC073944_8 (AC073944) ethylene-responsive RNA heli... 78 6e-13
sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A-11 (EIF-4A-... 77 7e-13
sp|P73421|RECQ_SYNY3 ATP-DEPENDENT DNA HELICASE RECQ >gi|7469265... 77 7e-13
emb|CAC11964.1| (AL445065) DNA helicase related protein [Thermop... 77 7e-13
gi|6320041 (putative) DEAD box RNA helicase; Dhh1p [Saccharomyce... 77 9e-13
sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (E... 77 9e-13
pir||S52017 translation initiation factor eIF-4A.9 - common tobacco 77 9e-13
sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A-9 (EIF-4A-9... 76 1e-12
pir||S53814 DEAD box protein - slime mold (Dictyostelium discoid... 76 1e-12
sp|O01836|GLH3_CAEEL ATP-DEPENDENT RNA HELICASE GLH-3 (GERMLINE ... 76 1e-12
pir||H69124 translation initiation factor eIF-4A homolog - Metha... 76 1e-12
gb|AAK42080.1| ATP-dependent RNA helicase [Sulfolobus solfataricus] 76 2e-12
sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A-15 (EIF-4A-... 76 2e-12
gb|AAG22819.1|AF302423_1 (AF302423) RNA helicase II/Gu [Xenopus ... 75 4e-12
dbj|BAB06103.1| (AP001515) ATP-dependent RNA helicase [Bacillus ... 75 4e-12
gb|AAF49564.2| (AE003529) CG5931 gene product [Drosophila melano... 75 5e-12
sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A-1 (EIF-4A-1... 75 5e-12
sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-SODA INTERGEN... 75 5e-12
gi|11499835 ATP-dependent RNA helicase, DEAD-family (deaD) [Arch... 75 5e-12
pir||H82390 ATP-dependent RNA helicase, DEAD box family VCA0990 ... 75 5e-12
sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2... 74 6e-12
sp|Q10202|YBX6_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C17D1.0... 74 6e-12
dbj|BAB10456.1| (AB005234) RNA helicase [Arabidopsis thaliana] 74 6e-12
gb|AAF47376.1| (AE003468) CG6994 gene product [Drosophila melano... 74 6e-12
emb|CAA73167.1| (Y12590) translation initiation factor eIF4A I [... 74 8e-12
pir||S13269 translation initiation factor eIF-4A.I - rabbit (fra... 74 8e-12
emb|CAA26842.1| (X03039) put. eIF-4A (aa 1-390) [Mus musculus] >... 74 8e-12
emb|CAA26843.1| (X03039) put. altern. eIF-4A (aa 1-370) [Mus mus... 74 8e-12
pir||S00986 translation initiation factor eIF-4A I - mouse 74 8e-12
gi|4503529 eukaryotic translation initiation factor 4A, isoform ... 74 8e-12
sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I... 74 8e-12
sp|P34640|YOQ2_CAEEL PUTATIVE ATP-DEPENDENT RNA HELICASE ZK512.2... 74 8e-12
gb|AAB39865.1| (U81597) ATP-dependent RNA helicase [Leishmania a... 73 1e-11
dbj|BAB01768.1| (AB022215) DEAD-Box RNA helicase-like protein [A... 73 1e-11
emb|CAA73168.1| (Y12591) translation initiation factor eIF4A II ... 73 1e-11
dbj|BAA28347.1| (AB010259) DRH1 [Arabidopsis thaliana] >gi|60167... 73 1e-11
gi|6320400 Mitochondrial DEAD box RNA helicase; Mss116p [Sacchar... 73 2e-11
pir||T51347 RNA helicase RH23 [imported] - Arabidopsis thaliana ... 73 2e-11
gb|AAF21155.1|AC010926_7 (AC010926) putative Eukaryotic initiati... 73 2e-11
gb|AAF54192.1| (AE003677) CG7878 gene product [Drosophila melano... 73 2e-11
pir||JS0039 translation initiation factor eIF-4A - mouse >gi|556... 72 2e-11
gi|6321267 RNA helicase involved in rRNA processing; Rok1p [Sacc... 72 2e-11
gb|AAF24007.1|AF083031_4 (AF083031) eukaryotic initiation factor... 72 2e-11
pir||S40763 hypothetical protein ZK512.2 - Caenorhabditis elegans 72 3e-11
gb|AAD55444.1|AF181659_1 (AF181659) BcDNA.GM05306 [Drosophila me... 72 3e-11
gb|AAF59119.1| (AE003838) BcDNA:GM05306 gene product [Drosophila... 72 3e-11
pir||T09159 RNA helicase prh75 - spinach >gi|1488647|emb|CAA6819... 71 4e-11
pir||E81090 ATP-dependent RNA helicase, probable NMB1368 [import... 71 5e-11
dbj|BAB10010.1| (AB006697) RNA helicase-like protein [Arabidopsi... 71 7e-11
dbj|BAB05326.1| (AP001512) ATP-dependent DNA helicase [Bacillus ... 71 7e-11
sp|P35683|IF4A_ORYSA EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (E... 70 9e-11
gb|AAF48747.1| (AE003506) CG5800 gene product [Drosophila melano... 70 9e-11
>pir||B75127 large helicase-related protein (lhr-1) PAB1817 - Pyrococcus abyssi
(strain Orsay) >gi|5458242|emb|CAB49731.1| (AJ248285)
large helicase-related protein (lhr-1) [Pyrococcus
abyssi]
Length = 912
Score = 1805 bits (4623), Expect = 0.0
Identities = 912/912 (100%), Positives = 912/912 (100%)
Query: 1 MHILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGL 60
MHILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGL
Sbjct: 1 MHILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGL 60
Query: 61 PPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTP 120
PPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTP
Sbjct: 61 PPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTP 120
Query: 121 ETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSAT 180
ETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSAT
Sbjct: 121 ETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSAT 180
Query: 181 VGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWE 240
VGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWE
Sbjct: 181 VGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWE 240
Query: 241 IVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
IVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI
Sbjct: 241 IVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSL 360
CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSL
Sbjct: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSL 360
Query: 361 IIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEH 420
IIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEH
Sbjct: 361 IIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEH 420
Query: 421 YLEVINVLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDE 480
YLEVINVLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDE
Sbjct: 421 YLEVINVLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDE 480
Query: 481 NFVMDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVARE 540
NFVMDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVARE
Sbjct: 481 NFVMDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVARE 540
Query: 541 VGRLRRTLLYDPRKAPDLIKGVEFNGEELELALNSLKQNTLIPSDRDIIITVLPDTVIIH 600
VGRLRRTLLYDPRKAPDLIKGVEFNGEELELALNSLKQNTLIPSDRDIIITVLPDTVIIH
Sbjct: 541 VGRLRRTLLYDPRKAPDLIKGVEFNGEELELALNSLKQNTLIPSDRDIIITVLPDTVIIH 600
Query: 601 SDLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDTK 660
SDLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDTK
Sbjct: 601 SDLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDTK 660
Query: 661 TIISKTIRDSTVYRWKMINVAKRMGALSKRARIRNVQKLFEGTIIEVETLNEVFHDKVDV 720
TIISKTIRDSTVYRWKMINVAKRMGALSKRARIRNVQKLFEGTIIEVETLNEVFHDKVDV
Sbjct: 661 TIISKTIRDSTVYRWKMINVAKRMGALSKRARIRNVQKLFEGTIIEVETLNEVFHDKVDV 720
Query: 721 QKVEEVLKLIAKGEIRITGRILNEPEEIDKEHGTISMEFMVSLHHTDEEIVELFKQRIMD 780
QKVEEVLKLIAKGEIRITGRILNEPEEIDKEHGTISMEFMVSLHHTDEEIVELFKQRIMD
Sbjct: 721 QKVEEVLKLIAKGEIRITGRILNEPEEIDKEHGTISMEFMVSLHHTDEEIVELFKQRIMD 780
Query: 781 SSIVMVCTNCGFSWETKVGRVINRVRELECPKCGSIMLAPLHPKDAELFKVALKKLKHGE 840
SSIVMVCTNCGFSWETKVGRVINRVRELECPKCGSIMLAPLHPKDAELFKVALKKLKHGE
Sbjct: 781 SSIVMVCTNCGFSWETKVGRVINRVRELECPKCGSIMLAPLHPKDAELFKVALKKLKHGE 840
Query: 841 KLSRNEERAYIKGLKAADLLKSYKDKALLALGTYGVGVETASRVLSKASEKELIKELIKL 900
KLSRNEERAYIKGLKAADLLKSYKDKALLALGTYGVGVETASRVLSKASEKELIKELIKL
Sbjct: 841 KLSRNEERAYIKGLKAADLLKSYKDKALLALGTYGVGVETASRVLSKASEKELIKELIKL 900
Query: 901 ERQYIRTKKFWD 912
ERQYIRTKKFWD
Sbjct: 901 ERQYIRTKKFWD 912
>pir||C71004 probable ATP-dependent helicase - Pyrococcus horikoshii
>gi|3257752|dbj|BAA30435.1| (AP000006) 912aa long
hypothetical ATP-dependent helicase [Pyrococcus
horikoshii]
Length = 912
Score = 1359 bits (3478), Expect = 0.0
Identities = 663/914 (72%), Positives = 797/914 (86%), Gaps = 4/914 (0%)
Query: 1 MHILLKKAIKEKFRELNRLQIEAFKRI-SEGKSVLIIAPTGSGKTEAAILPVMNSILKDG 59
MHI+LKKAIKEKF +LN+LQI+AFK I EG+SVLIIAPTGSGKTEAAI+PV+NSILKD
Sbjct: 1 MHIVLKKAIKEKFGKLNKLQIQAFKAIYGEGESVLIIAPTGSGKTEAAIIPVINSILKDN 60
Query: 60 LPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITT 119
L PISCLYIAPLKALNRDLLERLKWW KTGI+++VRHGDT Q RAKQV+NPPH+LITT
Sbjct: 61 LRPISCLYIAPLKALNRDLLERLKWWGEKTGIKVEVRHGDTPQSMRAKQVKNPPHILITT 120
Query: 120 PETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSA 179
PE+LPA+LT KSLR YL+NV+FV+VDE+TEL+DNKRG QLILNLKRLSLIADFIRIGLSA
Sbjct: 121 PESLPAILTTKSLRKYLENVKFVIVDEITELVDNKRGIQLILNLKRLSLIADFIRIGLSA 180
Query: 180 TVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLW 239
TVGNEEE++EW I+KP LKKRYKFKVL+P+P+PED+ELAE L+V +VA RLRTLW
Sbjct: 181 TVGNEEEIREWFEAKRIIKPHLKKRYKFKVLYPQPKPEDQELAEKLKVPGDVATRLRTLW 240
Query: 240 EIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKAL 299
EIVEK+K+ L+FVNTRQFAE+L HRLKTWGKPVEVHHGSLSKEARIEAERKLKEGK+KAL
Sbjct: 241 EIVEKYKKALIFVNTRQFAEILGHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKIKAL 300
Query: 300 ICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQS 359
ICTSSMELGIDIG+VD VIQYMSPRQVNRLIQRAGRS+HRL EVSEAYII TGVEDYLQ
Sbjct: 301 ICTSSMELGIDIGDVDVVIQYMSPRQVNRLIQRAGRSRHRLWEVSEAYIITTGVEDYLQG 360
Query: 360 LIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWE 419
L+IAKRA+EGKLE +KPYENALDVLAHFIVGLLIEY+ L ++EPYR+AK+TYPYR L+WE
Sbjct: 361 LVIAKRALEGKLEGVKPYENALDVLAHFIVGLLIEYRDLKINEPYRLAKDTYPYRKLRWE 420
Query: 420 HYLEVINVLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLD 479
YL V+ +LE+AGII+R E L+LGR++FKYYF+NLSTIPDEVSYKV+D+ SGK+IGRLD
Sbjct: 421 DYLRVLEILEEAGIIKRHEDRLRLGRKSFKYYFENLSTIPDEVSYKVIDVVSGKLIGRLD 480
Query: 480 ENFVMDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAR 539
ENFV++LEEG+EFIMHG+SWLVLEI + +IKVRESENIEGAIPSWEGELIPVPYEVA
Sbjct: 481 ENFVINLEEGIEFIMHGKSWLVLEIKDD--VIKVRESENIEGAIPSWEGELIPVPYEVAI 538
Query: 540 EVGRLRRTLLYDPRKAPDLIKGVEFNGEELELALNSLKQNTLIPSDRDIIITVLPDTVII 599
EVGRLRR L+ D +A LIKGVEF +EL++A LK+N LIPSDRDI+I+V P+ VI+
Sbjct: 539 EVGRLRRELVQDKERAIRLIKGVEFEEKELDIARERLKENDLIPSDRDILISVFPNLVIV 598
Query: 600 HSDLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDT 659
HSD GNK NEG++RYIL FL KYG++F+A++Q++ III PFKMNP+E+K+IL +
Sbjct: 599 HSDFGNKTNEGLARYILAFLSLKYGKIFSARTQSNGIIITTPFKMNPDEIKDILRIKGNV 658
Query: 660 KTIISKTIRDSTVYRWKMINVAKRMGALSKRARIRNVQKLFEGTIIEVETLNEVFHDKVD 719
+ IIS+ ++DS +YRWKM+NVAKRMGAL K ARI+ V++LFE TIIEVET NE+FHDKVD
Sbjct: 659 REIISRALKDSPIYRWKMLNVAKRMGALRKDARIKKVERLFEDTIIEVETFNEIFHDKVD 718
Query: 720 VQKVEEVLKLIAKGEIRITGRILNEPEEIDKEHGTISMEFMVSLHHTDEEIVELFKQRIM 779
V++V VLK I GEIR+ GRIL EP ++ E+ + EF+++ ++EI LFK++++
Sbjct: 719 VERVNTVLKKIKDGEIRVKGRILEEPTSLELEYMRLRGEFLMTSPLDEKEIELLFKEKLL 778
Query: 780 DSSIVMVCTNCGFSWETKVGRVINRVRELECPKCGSIMLAPLHPKDAELFKVALKKLKHG 839
+SSI +VCTNCGFSWETKV R+I+R+ +++CPKCGS MLAPLHPKDAE FK++LKKLK G
Sbjct: 779 ESSITLVCTNCGFSWETKVRRIIDRIGDIKCPKCGSRMLAPLHPKDAEAFKLSLKKLKSG 838
Query: 840 EKLSRNEERAYIKGLKAADLLKSYKDKALLALGTYGVGVETASRVLSKA-SEKELIKELI 898
EKL EE+AY+KGLKAADLL SY ALLAL TYGVGV+TA+R+LS++ SE+ LIKEL+
Sbjct: 839 EKLFEKEEKAYLKGLKAADLLNSYGKNALLALATYGVGVKTATRILSRSYSEEMLIKELM 898
Query: 899 KLERQYIRTKKFWD 912
+LE++YIRT+KFW+
Sbjct: 899 ELEKRYIRTRKFWE 912
>gi|11498749 large helicase-related protein (lhr-1) [Archaeoglobus fulgidus]
>gi|7446074|pir||D69393 large helicase-related protein
(lhr-1) homolog - Archaeoglobus fulgidus
>gi|2649437|gb|AAB90094.1| (AE001024) large
helicase-related protein (lhr-1) [Archaeoglobus
fulgidus]
Length = 892
Score = 610 bits (1555), Expect = e-173
Identities = 369/921 (40%), Positives = 546/921 (59%), Gaps = 68/921 (7%)
Query: 15 ELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP-ISCLYIAPLKA 73
EL LQ+EAF++I GK VLIIAPTGSGKTEAAI+P+ ++LK P I +YI PL+A
Sbjct: 17 ELTELQLEAFRKILSGKDVLIIAPTGSGKTEAAIIPIFEAMLKMEKPEGIVAIYITPLRA 76
Query: 74 LNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLR 133
LNRD+L R++ GIR+DVRHGDT +RA+Q R PPH+LITTPET L K+LR
Sbjct: 77 LNRDMLRRIRGIAEFLGIRVDVRHGDTPDSQRARQSRKPPHLLITTPETFQILFLGKNLR 136
Query: 134 PYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEWLGV 193
LKNVR+VVVDE+ ELID++RG QL + L+RL +A F IGLSATV + V ++G
Sbjct: 137 KALKNVRYVVVDEIHELIDSERGVQLSVALERLREMARFQTIGLSATVSRPKLVSRFVGA 196
Query: 194 D-EIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFV 252
D E+++ +K Y+ +V+ P D++LA L VD E+A L+ + + V++H L+FV
Sbjct: 197 DAEVLEWKAEKEYEIEVVKPEV---DEKLAAKLGVDAEIAGELKFIADAVKEHGSALIFV 253
Query: 253 NTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIG 312
NTRQ AE L +LK VEVHHGSLS+E R+EAE + +G++ ALICTSSMELGIDIG
Sbjct: 254 NTRQTAEALGIKLKKL-IDVEVHHGSLSRETRVEAEERFAKGELDALICTSSMELGIDIG 312
Query: 313 EVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLE 372
V+ V+QY SPRQ RL+QR GRS H L VS+ Y++A+ +D L+S +I +RA EG LE
Sbjct: 313 HVNLVVQYNSPRQAVRLVQRVGRSGHGLGRVSKGYVVASSFDDILESAVIVRRAKEGLLE 372
Query: 373 RIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVINVLEDAG 432
+ + + DVLA+ I L +EY +++ + +R+ K +PYRNL +E + EV N L G
Sbjct: 373 DAEIHFKSFDVLANQICALALEYGRIDAEKAHRIVKRAFPYRNLTFEEFDEVCNFLARIG 432
Query: 433 IIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEF 492
I +EG + R +Y+++N+S IPDE Y+VVD+ SGK IG LDE+F+ G F
Sbjct: 433 KIFYDEGEIGARRNTRRYFYENISMIPDEKHYRVVDVSSGKTIGSLDESFLSTF-SGEIF 491
Query: 493 IMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRRTL--LY 550
M G W VL +D +++V E + EG IPSW GE IPVP+EVA+EVG LR L L
Sbjct: 492 AMKGELWRVLSVDE---VVRV-EPVSAEGEIPSWVGEEIPVPFEVAQEVGMLRNWLAGLI 547
Query: 551 DPRKAPDLIKGVEFNGE---ELELALNSLKQNTLIPSDRDIIITVLPDTVIIHSDLGNKV 607
+ +K + G+ ++ +++ +P D I I + V++++ G+KV
Sbjct: 548 KAKGEKAALKALGAKGDVSVVVKTLREQIEKGFAVPYDSHITIEGSENVVVVNACFGHKV 607
Query: 608 NEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAPFKMNPNEVKEIL--LKDYDTKTIISK 665
NE + R + L ++ G + + I + +P K P EV+ IL ++ +++ +
Sbjct: 608 NETLGRILALLLTARRGSSVAVEIDPYRIKL-SPAK--PEEVESILKSIQPEAVESLAER 664
Query: 666 TIRDSTVYRWKMINVAKRMGALSK-----RARIRNVQKLFEGTIIEVETLNEVFHDKVDV 720
+ D+ + +WK++N A++ G LSK R +R++ + T I E L E+F +K+DV
Sbjct: 665 AVFDTRLMQWKVVNAARKFGFLSKEDELSRINVRSLVVKLKDTPIYREALREIFVEKMDV 724
Query: 721 QKVEEVLKLIAKGEIRITGRILNEPEEIDKEHGTISMEFMVSLHHTDEEIVELFKQRIMD 780
++ EV++ I+ GEI ++ + NE I +M+ + + E I+ F++R+
Sbjct: 725 ERTAEVVEKISSGEIEVS--VYNELSPISLAARQRAMDILAV--KSSEAILRAFRERLEK 780
Query: 781 SSIVMVCTNCGFSWETKVGRVINRVRELECPKCGSIMLA-------PLHPKDAELFKVAL 833
+ + C NC + +V C KCGS M+A P ++ ELFK+A
Sbjct: 781 EVVRVYCLNCRACYTERV----ESFERFTCIKCGSKMIAVFNSRRKPEEFRERELFKLAN 836
Query: 834 KKLKHGEKLSRNEERAYIKGLKAADLLKSYKDKALLALGTYGVGVETASRVLSK--ASEK 891
+ HG+ +A+ AL T+G+G +TA+R+LS+ E
Sbjct: 837 LVMAHGK-------------------------RAVYALSTFGIGADTAARLLSRYYLEED 871
Query: 892 ELIKELIKLERQYIRTKKFWD 912
+ K LI+ ER YIRT++FWD
Sbjct: 872 DFFKALIEAERNYIRTRRFWD 892
>gb|AAG19610.1| (AE005050) ATP-dependent helicase; HelA [Halobacterium sp. NRC-1]
Length = 946
Score = 551 bits (1404), Expect = e-155
Identities = 334/940 (35%), Positives = 525/940 (55%), Gaps = 45/940 (4%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP- 62
++ A+ E+ F Q A +++G++ L++APTG+GKTE A+LPV ++++ DG PP
Sbjct: 19 VRNALSERGFTTPTEPQRRAVPALADGRNGLVVAPTGTGKTETAMLPVFDALVSDGGPPD 78
Query: 63 -ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPE 121
LY+ PL+ALNRD+ ERL WW G+ +DVRHGDTT Y+R +Q +PP VL+TTPE
Sbjct: 79 GFGALYVTPLRALNRDMRERLDWWGETLGLEVDVRHGDTTDYQRRQQATDPPDVLVTTPE 138
Query: 122 TLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFI-RIGLSAT 180
TL A+LT +LR L +V VVVDEV EL KRGAQL + L+RL +A + RIGLSAT
Sbjct: 139 TLQAMLTGSTLRDGLADVEHVVVDEVHELAGAKRGAQLAIGLERLVEVAGRVQRIGLSAT 198
Query: 181 VGNEEEVKEWLGVD---EIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT 237
VG+ E+ +L EI++ + F+V P D+ LA L +A+ +R
Sbjct: 199 VGDPHEIGAFLTGGRGCEIIEVDVTSNVSFEVREPAVTDADERLASELLTTPAMASHVRA 258
Query: 238 LWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
+ EIV++H VL+FVNTRQ AE L R K + VHHGSLSK+ARI+ E + K G +
Sbjct: 259 IREIVDRHDSVLIFVNTRQTAEALGSRFKELDANIGVHHGSLSKDARIDVEDRFKSGDLD 318
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYL 357
L+CTSSMELGID+G +D V+QY SPR+V RL+QR GR+ H VSE +I +D L
Sbjct: 319 GLLCTSSMELGIDVGGIDHVVQYNSPREVKRLLQRVGRAGHSRDAVSEGTVITGSTDDTL 378
Query: 358 QSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLK 417
++L +A RA EG +E + + +LD +A+ IVG++++ + Y + YP++ L
Sbjct: 379 EALAVADRANEGAVEDTQVHHGSLDTVANQIVGVVMDVGETEAWHAYNIITRAYPFKQLT 438
Query: 418 WEHYLEVINVLEDAGIIRREEG--ILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVI 475
E + V L ++ +E + ++YY+ NLS IPDE +Y+V D+ G+ +
Sbjct: 439 EETFRAVAMELHRNRVVYVDEDDDTISTSGGTWQYYYANLSMIPDEETYEVYDMAGGRQV 498
Query: 476 GRLDENFVMDLEE-GMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVP 534
G LDE FV++ E G F+ G W + ID ++ ++V E+ G +PSW G+ IPVP
Sbjct: 499 GTLDERFVVNFAEPGATFVQRGEMWRITNIDEDDQQVEVSPIEDPAGEVPSWTGQEIPVP 558
Query: 535 YEVAREVGRLRRTL-----LYDPRKAPDLIKGVEFN------GEELE-LALNSLKQNTLI 582
Y VA+ VG +R T P+ A + G L+ +A + +Q+ +
Sbjct: 559 YAVAQAVGGMRATGGRQLGTGTPKDAVARDVAARYPTTHRTAGSALDRMARHVTEQDAPV 618
Query: 583 PSDRDIIITVLPDTVIIHSDLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAPF 642
PS I++ TV++++ G++VNE + R + L + G + + I + P
Sbjct: 619 PSAERIVVEQAGSTVVVNACFGHEVNETLGRLVSALLGQQTGSSVGLDAGPYRIELEVPS 678
Query: 643 KMNPNEVKEILLKDYD---TKTIISKTIRDSTVYRWKMINVAKRMGALSK-----RARIR 694
+++ +V + L+D D ++ +++ S ++ + VA + GAL + +
Sbjct: 679 RVSATDVVAV-LRDTDPDHVAGLLELSLKQSETLKFTLAQVAAKFGALKRWKGRDGVGLS 737
Query: 695 NVQKLFEGTIIEVETLNEVFHDKVDVQKVEEVLKLIAKGEIRITGRILNEPEEIDKEHGT 754
+ EGT + E + EVFH +DV + +VL + GE+ + I+ E + +
Sbjct: 738 RLLGALEGTPVYEEAIREVFHTTLDVARASDVLARVQSGELGV--EIVGERTAVGAGGRS 795
Query: 755 ISMEFMVSLHHTDEEIVELFKQRIMDSSIVMVCTNCG-FSWETKVGRVINRVRELECPKC 813
E +++ H D +V+ K RI D + + C +C +S ET V RV + + ECP+C
Sbjct: 796 AGTE-LLTPEHADASVVQTIKDRIQDDRVKLFCVHCADWSHETMVRRVTD---QPECPRC 851
Query: 814 GSIMLAPLHPKDAELFKVALKKLKHGEKLSRNEERAYIKGLKAADLLKSYKDKALLALGT 873
GS +A L P E+ K E+ R +RAY + A +++S+ +A++AL
Sbjct: 852 GSTRIAALSPWADEVITAVRADDKDDEQDDRT-QRAY----RNASIVQSHGKRAVIALSA 906
Query: 874 YGVGVETASRVLS--KASEKELIKELIKLERQYIRTKKFW 911
GVG A+RV++ + +E E +++++ ER+Y RTK FW
Sbjct: 907 RGVGPRNAARVINRHRETEAEFYRDILEREREYARTKAFW 946
>gb|AAK40723.1| ATP-dependent helicase [Sulfolobus solfataricus]
Length = 913
Score = 485 bits (1234), Expect = e-135
Identities = 323/929 (34%), Positives = 506/929 (53%), Gaps = 63/929 (6%)
Query: 13 FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLK 72
+ +L +Q A ++ GK+VLIIAPTG GKTEAAILP+ +I KD IS LYI PL+
Sbjct: 17 YEDLTPIQKIAIPKVLSGKNVLIIAPTGYGKTEAAILPIFYTIFKDKPEKISTLYITPLR 76
Query: 73 ALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSL 132
ALNRDL RL+ I ++VRHGD++Q R + + NPP VL+ TPETL L+ +
Sbjct: 77 ALNRDLELRLRRLGEAFNISVNVRHGDSSQKERKEILDNPPDVLLVTPETLLYLVLNDTF 136
Query: 133 RPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIR---IGLSATVGNEEEVKE 189
R Y N++++++DE+ E++D KRG +L + ++R+ IA + IG+SAT+G+ E K
Sbjct: 137 RKYFTNLKWIIIDELQEMLDEKRGIELSVLIQRIKKIATRNKIQLIGISATIGDVEIAKR 196
Query: 190 WL---GVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHK 246
+L G EI K K ++ P+ +D +LA L + + ARL L EI++ +K
Sbjct: 197 YLDREGEVEIANINAIKDIKVDLILPKVEKKDADLAVKLGLRPDTIARLEKLNEIIKNNK 256
Query: 247 RVLVFVNTRQFAEVLAHRL-KTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSM 305
+++F NTR+ +E +A++L + + HHGSLS+E RI+ E K G + A++ TSS+
Sbjct: 257 PIIIFTNTRETSEFIANQLMSNYSLKIASHHGSLSREIRIKTENDFKNGNIDAIVATSSL 316
Query: 306 ELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYII-ATGVEDYLQSLIIAK 364
ELGIDIG ++ V+QYMSPRQV RLIQR GRS H++ S Y+I + + D L+ I +
Sbjct: 317 ELGIDIGRINLVVQYMSPRQVIRLIQRVGRSGHKIGRTSIGYVIPSEDLFDILECRAIIE 376
Query: 365 RAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEV 424
G LE+ EN LDV AH I G+++E K N E + + ++ + N E + V
Sbjct: 377 ALYSGYLEKPLFEENPLDVAAHEIAGMVLEGYK-NPKEMMEILRNSFYFENFTDEMFENV 435
Query: 425 INVLEDAGII-RREEGILKLGRRAFKYYFDNLSTIPDEV-SYKVVDIGSGKVIGRLDENF 482
I +LE A I+ RRE+G L RR +KYY+ + IPD + SY V+D + IG LDE+F
Sbjct: 436 IELLESAKIVKRREDGSLFPSRRIWKYYY-TTNMIPDSIRSYIVIDHATNMKIGTLDEDF 494
Query: 483 VMDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVG 542
V+ L+E FI+ R W V+ I+ + + ++ E +N G +PSW GE IPV E+AR+V
Sbjct: 495 VVTLDEDSVFILGSRLWKVVSIENDRIFVERAELKN--GILPSWFGESIPVEKEIARKVY 552
Query: 543 RLRRTLLYDPRKAPDLIKGVEFNGEELELALNSLKQN-TLIPSDRDIIITVLPDTVIIHS 601
+ + R+ D E+ +K+ + D ++ V + +I+HS
Sbjct: 553 EYIYAVEKEKRETED--------NSLAEVVREYMKRGYPELRPDLILVEIVKNNLIIVHS 604
Query: 602 DLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDTK- 660
G++ N + I L + T ++ + I I + + N++++I+ T
Sbjct: 605 PFGSRGNNTLGAIISVMLDVEKQTKTTYRADPYHIAISSVLPITKNDMEKIVSTLNSTPI 664
Query: 661 ----TIISKTIRDSTVYRWKMINVAKRMGALSKRARI---RNVQKLFEGTIIEVETLNEV 713
I+ K I++S ++WK++ KR G + I ++ K + TII E + E+
Sbjct: 665 DRIIEILKKGIKESPQFKWKLLVEIKRFGMIDPEKEITLTSSIIKAYGDTIIGEEAVKEL 724
Query: 714 FHDKVDVQKVEEV----LKLIAKGEI-----RITGRILNEPEEIDKEHGTISMEFMVSLH 764
DV+ ++E+ K++ E + +ILN DKE +
Sbjct: 725 LVKNYDVEIIKELKNYNWKIVEVYEASPLAKQFLDKILNY-TSFDKEEKPL--------- 774
Query: 765 HTDEEIVELFKQRIMDSSIVMVCTNCGFSWETKVGRVINRVRELECPKCGSIMLAPLHPK 824
++E+FK+R+ + + ++C +CG WE K +IN +CPKC SI L +P
Sbjct: 775 -----MIEIFKKRLENKELKLICLSCG--WEGKYS-IIN--SPSKCPKCSSIFLTATNPD 824
Query: 825 DAELFKVALKKLKHGEKLSRNEERAYIKGLKAADLLKSYKDKALLALGTYGVGVETASRV 884
D++ K+ K +K GEKL+ E R + A Y +L+AL T GVG +V
Sbjct: 825 DSDSVKIVRKAIK-GEKLTSKERRQLEDLKRVASFFPDYGKYSLIALATNGVGPSNLGKV 883
Query: 885 LSKAS--EKELIKELIKLERQYIRTKKFW 911
LSK + E E LI E+++IRT+K+W
Sbjct: 884 LSKLNEGENEFYMALIDEEKRFIRTRKYW 912
>emb|CAC11967.1| (AL445065) Large helicase related protein [Thermoplasma
acidophilum]
Length = 894
Score = 478 bits (1218), Expect = e-134
Identities = 310/906 (34%), Positives = 498/906 (54%), Gaps = 66/906 (7%)
Query: 27 ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLLERLKWWE 86
+ EGK+VL+++PTGSGKTEAA+LPV IL++ + LYI PL+ALNRD+L RL +
Sbjct: 35 VLEGKNVLLLSPTGSGKTEAAVLPVFQRILREKPKKVFALYITPLRALNRDILSRLVDYG 94
Query: 87 AKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDE 146
+ GI + VRH D + + + +PP +L+TTPE+L LL K+LR ++ NVR V+VDE
Sbjct: 95 RELGIDVQVRHSDMSDADKRRMAESPPDILVTTPESLQILLNGKNLRRFIANVRVVIVDE 154
Query: 147 VTELIDNKRGAQLILNLKRL-SLIADFIRIGLSATVGNEEEVKEWL---GVDEIVKPPLK 202
+ + +N+RG+QL L L+RL L +F RIGLSATVGN ++ +L G EI+ LK
Sbjct: 155 LHDAAENERGSQLSLALERLRDLAGNFQRIGLSATVGNPGDLARFLVPNGTCEIISTTLK 214
Query: 203 KRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLA 262
K V+ P E+ AE++ D + A + +W+++ +H LVFVN R AE LA
Sbjct: 215 KNMSIDVMVPDESSEED--AEVMGCDRQYAGAILKVWDLINRHAGSLVFVNRRFVAEDLA 272
Query: 263 HRLKT-WGK-PVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQY 320
RLK +G+ PV VHHGSLSKE R AER K G+VKALICTSS+ELGID+G +AVIQ+
Sbjct: 273 FRLKLKFGEIPVLVHHGSLSKETREFAERSFKNGEVKALICTSSLELGIDVGTANAVIQF 332
Query: 321 MSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENA 380
SPRQ+N++IQR GRS+H + + S+ Y++ T V + +++ I EGK+E ++ +N+
Sbjct: 333 NSPRQINKMIQRIGRSEHWIGKTSKGYVVCTDVIEMEEAIAIVDSIAEGKIENVQIMKNS 392
Query: 381 LDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVINVLEDAGIIRREEGI 440
L LA+ I+ + K+NV + K +Y Y +L W+ Y V++ L + E+ +
Sbjct: 393 LSTLANQILSEINAQGKVNVKNFFETVKRSYAYADLPWDEYYSVVSFLASTRKLWLEDEL 452
Query: 441 LKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFV-MDLEEGMEFIMHGRSW 499
+ R KYY +N+S IP E +YKV+D G GK IG LDE +V +++ G F+M G +W
Sbjct: 453 MGRRRNTLKYYIENISMIPSEKNYKVIDTG-GKFIGTLDERYVASEIDAGSYFVMRGNTW 511
Query: 500 LVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRRTLLYDPRKAPDLI 559
V+ ID + +++ ES P W GE IPV Y+V + V RK+ ++
Sbjct: 512 RVVRIDHDRILV---ESFFTPAIAPRWTGEDIPVLYDVVQRVSA--------NRKSRSIL 560
Query: 560 KGVEFNGEELELALNSLKQNTLIPSDRDIIITVLPDTVIIHSDLGNKVNEGISRYILGFL 619
++ + L QN + DR +II D +II LG + N ++ + L
Sbjct: 561 NYID---DASARKLEEWYQNDIATVDR-VIIESFNDEIIIQILLGTRGNFALAEILSNVL 616
Query: 620 YSKYGRVFTAKSQAHSIIIHAPFKMNPNEVKEIL--LKDYDTKTIISKTIRDSTVYRWKM 677
S G + I + K+ +V ++ + + + I + S ++
Sbjct: 617 TSITGESVEMDFSPYHIYLRTSRKIYAEDVMRMIKSINLENLNSYIRSSASRSRFFKSVF 676
Query: 678 INVAKRMGALS-----KRARIRNVQKLFEGTIIEVETLNEVFHDKVDVQKVEEVLKLIAK 732
+ A++ G +S +R R+ + + +++ +++ ++ +D +D+ + + +
Sbjct: 677 LYEARKFGIISEDADLERIRVDKIMDAYSESVVFEDSIRKLINDYMDIDAITSFIGSLDT 736
Query: 733 GEIRITGRILNEPEEIDKEHGTISMEFMVSLHHTDEEIVELFKQRIMDSSIVMVCTNCGF 792
+ + +I ++ +I H + E + L T + I+E + RI++ + + C +CG
Sbjct: 737 VQFVLKDKI-SKASDIFISHYS---ERVAPLRPT-KVILESVRNRILNERVTLYCVSCG- 790
Query: 793 SWETKVGRVINRVRELECPK---CGSIMLAPLHPKDAELFKVALKKLKHGEKLSRNEERA 849
RVR+++ PK CGS ++A L D E K+ ++ +
Sbjct: 791 ------NVRTYRVRDIKVPKCDVCGSRLVAAL--SDFERAKI--------------DDPS 828
Query: 850 YIKG-LKAADLLKSYKDKALLALGTYGVGVETASRVL--SKASEKELIKELIKLERQYIR 906
Y K LK A L+K +A++ L GVG ETASR+L + A+E +LI+ ++ E Y R
Sbjct: 829 YRKRILKNAHLVKEKGIQAVMVLSARGVGPETASRILEVTYANEDDLIRSILTAEMDYAR 888
Query: 907 TKKFWD 912
++FWD
Sbjct: 889 NRRFWD 894
>pir||G72526 hypothetical protein APE2188 - Aeropyrum pernix (strain K1)
>gi|5105887|dbj|BAA81199.1| (AP000063) 977aa long
hypothetical protein [Aeropyrum pernix]
Length = 977
Score = 441 bits (1123), Expect = e-122
Identities = 323/952 (33%), Positives = 484/952 (49%), Gaps = 77/952 (8%)
Query: 13 FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP---ISCLYIA 69
++ L +Q +AF I G + L++APTGSGKTEAA+ P++ + + + +Y+
Sbjct: 48 YKSLLPIQEKAFPIIYRGLNALVVAPTGSGKTEAALAPLLARLRNGRVASGGGVKVVYVT 107
Query: 70 PLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTV 129
PL+ALNRDL R++ G + VRHGDT Q R + + PP ++ITTPE+L LLTV
Sbjct: 108 PLRALNRDLEGRVERLAGLFGYTVQVRHGDTVQSSRRRFLERPPDIVITTPESLALLLTV 167
Query: 130 KSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIAD--FIRIGLSATVGNEE-- 185
K + LK R VVVDE+ EL+++KRG +L LNL++L L+A RIGLSATV
Sbjct: 168 KRAKEVLKQARAVVVDEIHELMESKRGVELSLNLEKLELMAGRRLQRIGLSATVSRHSLY 227
Query: 186 EVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVE-K 244
LG R+ VL P+ D + + ++ + E+V+ +
Sbjct: 228 RAASLLGAG---------RHVSMVLDTSPKEYDVRVVVVGDEGRFWENSVKAIAELVKGE 278
Query: 245 HKRVLVFVNTRQFAEVLAHRL-KTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTS 303
VL+F NTR E LA L + G+ V HHGSLS+ R ER KEG+VKA++ TS
Sbjct: 279 GGSVLIFANTRSTVETLAFALSRELGEEVPAHHGSLSRHVRERVERDFKEGRVKAIVATS 338
Query: 304 SMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIA-TGVEDYLQSLII 362
S+ELGID+G V V+Q++SPRQV ++QRAGRS HR E S A I+ V + L+S +I
Sbjct: 339 SLELGIDVGRVALVVQFLSPRQVTAMVQRAGRSGHRFGERSRAVIVTIDNVFEVLESHVI 398
Query: 363 AKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYL 422
A RA++G LE I + D LAHF+ G I+ + + Y++A T PY +LK E
Sbjct: 399 AFRAMKGDLEDISIPKKPYDALAHFMAGAAIDSEPPTLEGVYKLAVSTAPYEDLKMEEVE 458
Query: 423 EVINVLEDAGIIRREEGILKLGRRAFKY-YFDNLSTIPDEVSYKVVDIGSGKVIGRLDEN 481
E+ VL D +IR G KLGR + Y YF +S IPDE ++KV D+ SG+ +G + E
Sbjct: 459 EIARVLSDVRVIRLGPG-GKLGRSSRTYSYFYRVSMIPDEKTFKVHDVVSGRDVGEVGER 517
Query: 482 FVM-------DLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVP 534
F+ D ++ G+ W +LE+D + + V +EGAIP+WEGELIPV
Sbjct: 518 FIQLRLMKASDPRSKPYIVLGGKVWKILEVDIDAGKVLVSPEGEVEGAIPAWEGELIPVD 577
Query: 535 YEVAREVGRLRRTLLYDPRKAPDLIKGVEFNGEELELALNSLKQN----TLIPSDRDIII 590
++VAREV + + D L++ + + +E L+ L + + S R ++
Sbjct: 578 FKVAREVCSIMSLAMNDMEAGARLLRARRLDEKAMERVLDVLGETGRLWGTVLSWRRPVV 637
Query: 591 TVLPDTVIIHSDLGNKVNEGISRYI---------LGFLYSKYGRVFTAKSQ-------AH 634
I+++ LG++ N +S + + F Y Y VF + + AH
Sbjct: 638 EEAEGLAILYACLGSRGNFALSLLLSKLMEGSVAVEFHYIPYAIVFKSPASRGLGRLVAH 697
Query: 635 SIIIHAPFKMNPNEVKEILLKDYDTKTIISKTIRDSTVYRWKMINVAKRMGALSKRAR-- 692
S+ A K+ P E +L YD +R S Y + VAKRMG + A
Sbjct: 698 SLKTLA--KLEPAERLGML---YD-------AVRRSRAYLVRFYQVAKRMGVVDPDATLS 745
Query: 693 ---IRNVQKLFEGTIIEVETLNEVFHDKVDVQKVEEVLKLIAKGEIRITGRILNEPEEID 749
IR + +GT +++ET+ E+ H+K+D+ + L ++ + R+ E
Sbjct: 746 LDIIRKMADAMQGTPVDIETVKELVHEKLDIDALNRFLDDVSDVAVVELQRLSPLARE-T 804
Query: 750 KEHGTISMEFMVSLHHTD-EEIVELFKQRIMDSSIVMVCTNCGFSWETKVGRVINRVREL 808
+ + ++ VSL ++I+E K+R+ + IV +C +C E KV + R
Sbjct: 805 LTNPYLRVDAAVSLKTLGLDKIIEAKKRRLSEKRIVFLCISCDKRHEKKVAE-LPRGTAY 863
Query: 809 ECPKCGSIMLAPLHPKD-AELFKVALKKLKHGEKLSRN--------EERAYIKGLKAADL 859
CP CGS+ LAPL P + E A + + G KLSR EERA + A +
Sbjct: 864 RCPYCGSLALAPLPPTETGERLAEAYTRKRKGAKLSREEAKLAREVEERARLYISLAVEG 923
Query: 860 LKSYKDKALLALGTYGVGVETASRVLSKASEKELIKELIKLERQYIRTKKFW 911
Y +AL A G + R L E LIK E Y+ +++W
Sbjct: 924 KARYIAEALSAQGVGPRRARSLLRELQLYGENRFYLALIKAEEDYVSNRRYW 975
>pir||D75091 large helicase-related protein (lhr-2) PAB0744 - Pyrococcus abyssi
(strain Orsay) >gi|5458545|emb|CAB50033.1| (AJ248286)
large helicase-related protein (lhr-2) [Pyrococcus
abyssi]
Length = 867
Score = 348 bits (884), Expect = 1e-94
Identities = 252/809 (31%), Positives = 421/809 (51%), Gaps = 90/809 (11%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGL--- 60
++++ K KF+ Q A I +G++VLI +PTGSGKT +A L +++ ++ G
Sbjct: 24 IVREWFKRKFKSFTPPQRYAIVEIHKGENVLISSPTGSGKTLSAFLAIISELISLGRRGK 83
Query: 61 --PPISCLYIAPLKALNRDLLERLK------------WWEAKTGIRIDVRHGDTTQYRRA 106
I C+Y++PL+ALN D+ L+ E IR+ VR DT+ Y ++
Sbjct: 84 LEDKIYCVYVSPLRALNNDIRRNLEEPLQEIRELSQELNEEIPEIRVAVRTSDTSSYEKS 143
Query: 107 KQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRL 166
K ++ PPH+LITTPE+L L R L++V++V+VDEV L +NKRG+ L L L+RL
Sbjct: 144 KMLKMPPHILITTPESLAIALNAPRFREKLRDVKWVIVDEVHALAENKRGSHLALTLERL 203
Query: 167 SLIA--DFIRIGLSATVGNEEEVKEWL-GVDEIVKP--------PLKKRYKFKVLFPRPR 215
+ DF+RIGLSAT+ EEV +++ G + KP K+ K V
Sbjct: 204 RELTKRDFVRIGLSATIHPLEEVAKFVFGFSDDGKPRPGLIVDVSFAKKTKITV------ 257
Query: 216 PEDKELAELLRVDVEVA--ARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKT----WG 269
+ + +L+ V A R + E+V K L+F NTR AE +A+ LK W
Sbjct: 258 --ESVVEDLVYTPANVLNEALYRRIGELVRSRKTTLIFTNTRSGAERVAYHLKKMFPEWE 315
Query: 270 KPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRL 329
+E HH SLS+E R+E E +LK G++K ++ ++S+ELGIDIG +D VI SP+ VNR
Sbjct: 316 DKIEAHHSSLSREVRLEVEERLKRGELKIIVSSTSLELGIDIGTIDLVILIGSPKSVNRA 375
Query: 330 IQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIV 389
+QR GR+ HRL EVSE I+A +D ++ ++A A + KL+RIK +N LDVL ++
Sbjct: 376 LQRIGRAGHRLHEVSEGVILALDRDDLVEVTVLAHNARKRKLDRIKIPKNPLDVLVQHLL 435
Query: 390 GLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVINVL--EDAGIIRR--------EEG 439
G+ +E + V E Y++ + YPY +L +E ++ V+ L E +G+ R E G
Sbjct: 436 GMALE-RVWEVEEAYKVVRRAYPYHDLPFEDFINVLKYLAGEFSGLEERKVYAKIWLENG 494
Query: 440 IL-KLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEFIMHGRS 498
K G+ Y+ N TIPDE V + K IG ++E F L G F++ GR+
Sbjct: 495 KFGKRGKMTRAIYYMNTGTIPDEAKIDVFTMDK-KYIGTVEEEFAERLIPGDIFVLAGRT 553
Query: 499 WLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRR---TLLYDPRKA 555
+ ++ G + + R E ++ IPSW E++P+ +++A ++ + RR +LL D
Sbjct: 554 YEFVKSRGNKIYVIPR--EGVKPTIPSWFSEMLPLSFDLALDIQKFRREVKSLLNDEDAE 611
Query: 556 PDLIK--GV-EFNGEELELALNSLKQNTLIPSDRDIIITVLPDTVII----HSDLGNKVN 608
L++ G+ E + + ++IP D +++ ++ + ++ H+ +G + N
Sbjct: 612 LKLMEKYGIDEITAKAIISYFREQANYSVIPDDETVLVEIVKEGNVVKYFFHTLIGRRAN 671
Query: 609 EGISRYILGFLYSKYGRV---FTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDTKTIISK 665
+ +SR +L SK R + + +++ EV E L + + + + +
Sbjct: 672 DALSR-AFAYLISKRKRCNVGMAITDNGFMLKVPRDKELSQEEVLE-LFQVENLRETLKR 729
Query: 666 TIRDSTVYRWKMINVAKR--------MGALSKRARIR-NVQKLF--------EGTIIEVE 708
+ ++ + + + +VA R MG +R + N Q L E +++ E
Sbjct: 730 ALDNTELLKRRFRHVANRGLLVLRRYMGRKKSLSRQQMNAQTLLNFLKRNYPEFPLLK-E 788
Query: 709 TLNEVFHDKVDVQKVEEVLKLIAKGEIRI 737
E+ DK+D++ E LK I +G+++I
Sbjct: 789 VYREILEDKMDIENAELFLKWIKEGKVKI 817
>sp|Q57742|HELX_METJA PUTATIVE ATP-DEPENDENT HELICASE MJ0294 >gi|2129094|pir||G64336
large helicase related protein LHR homolog -
Methanococcus jannaschii >gi|1591016|gb|AAB98279.1|
(U67484) large helicase-related protein (LHR), probably
RNA helicase [Methanococcus jannaschii]
Length = 841
Score = 348 bits (884), Expect = 1e-94
Identities = 251/783 (32%), Positives = 415/783 (52%), Gaps = 67/783 (8%)
Query: 5 LKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP-- 62
+K+ K K++ Q A K I EGK+VLI +PTGSGKT +A L +N ++K +
Sbjct: 24 VKEWFKRKYKTFTPPQRYAIKEIHEGKNVLICSPTGSGKTLSAFLAGINELIKLSMENKL 83
Query: 63 ---ISCLYIAPLKALNRDLLERLK------WWEAKT------GIRIDVRHGDTTQYRRAK 107
I LY++PL+ALN D+ LK + AK IR+ VR DTT ++ +
Sbjct: 84 EDRIYILYVSPLRALNNDIERNLKEPLKEIYDVAKEIGIELDEIRVAVRTSDTTSSQKQR 143
Query: 108 QVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLS 167
++ PPH+LITTPE+L L L +++V+VDE+ L NKRG L L+L+RL+
Sbjct: 144 MLKKPPHILITTPESLAIALNSPKFSQLLSGIKYVIVDEIHALT-NKRGVHLSLSLERLN 202
Query: 168 LIADFIRIGLSATVGNEEEVKEWL---GVD-EIVKPPLKKRYKFKVLFPRPRPEDKELAE 223
IA+FIRIGLSAT+ EV ++L G D IV KK + KV+ P +D
Sbjct: 203 RIANFIRIGLSATIHPLTEVAKFLVGNGRDCYIVDVSYKKEIEIKVISP---VDDF---- 255
Query: 224 LLRVDVEVAARLRTLWE-IVEKHKRVLVFVNTRQFAEVLAHRLKTWG-KPVEVHHGSLSK 281
+ E++ RL L + ++E+HK L+F NTR E +A LK G + VE HH SLS+
Sbjct: 256 IYTPSEEISKRLYNLLKKLIEEHKTTLIFTNTRSATERVAFYLKQLGVEKVETHHSSLSR 315
Query: 282 EARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLL 341
E R+E E KLK+G+++ I ++S+ELG+DIG +D VI SP+ V+R +QR GRS HRL
Sbjct: 316 EHRLEVEEKLKKGEIRVCISSTSLELGVDIGSIDLVILLGSPKSVSRALQRIGRSGHRLH 375
Query: 342 EVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVH 401
E S+ II +D ++++++A A GK++RI +N LDVLA +VG+ +E + +V
Sbjct: 376 EKSKGIIIPFDRDDLVENVVLAYDAKIGKIDRIHIPKNCLDVLAQHLVGMALE-KVWDVD 434
Query: 402 EPYRMAKETYPYRNLKWEHYLEVINVLED--------AGIIRREEGILKLGRRAFKYYFD 453
E Y + K+ YPY++L + +L+V+N L A I ++ K G+ Y+
Sbjct: 435 EAYNLIKKAYPYKDLSKKDFLDVLNYLAGGIEEKNVYAKIWLKDNKFGKRGKSVRAIYYM 494
Query: 454 NLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEFIMHGRSWLVLEIDGENLIIKV 513
N+ TIPDE + V I GK +G ++E F L +G F++ G+++ L G I+V
Sbjct: 495 NVGTIPDETAVDV--IADGKYVGEVEEEFAEKLMKGDIFVLGGKTYKYL--GGRGNKIRV 550
Query: 514 RESENIEGAIPSWEGELIPVPYEVAREVGRLRRTLL-YDPRKAPDLIKGVEFNGEELELA 572
+E + + IP+W E +P+ Y++A ++ + R+ +L D + + E + ++
Sbjct: 551 KEVFDEKPTIPAWFSEQLPLAYDLALDIEKFRKEVLSSDIEEIREKYDIDEKTAKAIKNY 610
Query: 573 LNSLKQNTLIPSDRDIIITVLPDT----VIIHSDLGNKVNEGISRYILGFL--YSKYGRV 626
++ + ++P D ++I + I H G + NE ++R ++ K
Sbjct: 611 MDEQNKFAIVPDDEKVLIENFDEEKRRYYIFHFVAGRRANEALARAFANYISKIKKCNVR 670
Query: 627 FTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDTKTIISKTIRDSTVYRWKMINVAKRMGA 686
+ ++I+ K+ ++ E+ + D + ++I S + + + +VA R
Sbjct: 671 ISVNDYGFALILPKNRKIKRADITELF--NLDVVKNVKESIERSEILKRRFRHVATRGFM 728
Query: 687 LSKRARIRNV---QKLFEGTII-----EV------ETLNEVFHDKVDVQKVEEVLKLIAK 732
+ +R R + ++ F ++ EV ETL E+ D +D+ + + I +
Sbjct: 729 ILRRYMNRKISVDRQQFNAEMLLKYCKEVNHPLYRETLREILEDSLDIDNALDYFEKIKR 788
Query: 733 GEI 735
+I
Sbjct: 789 RKI 791
>pir||C72521 hypothetical protein APE2144 - Aeropyrum pernix (strain K1)
>gi|5105843|dbj|BAA81155.1| (AP000063) 880aa long
hypothetical protein [Aeropyrum pernix]
Length = 880
Score = 344 bits (873), Expect = 3e-93
Identities = 263/826 (31%), Positives = 423/826 (50%), Gaps = 106/826 (12%)
Query: 4 LLKKAIKEKFRE----LNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSIL--- 56
+L+ + E FR Q +A + +GKSVLI +PTG+GKT AA L V++ IL
Sbjct: 1 MLRPYVAEWFRSTYGSFTEPQRQAIPLVKQGKSVLITSPTGTGKTLAAFLGVIDEILFLM 60
Query: 57 --KDGLPPISCLYIAPLKALNRD----LLERLKWWEAKTG--------IRIDVRHGDTTQ 102
+ I +Y++PL+ALN D L E L+ E K +++ VR DTT
Sbjct: 61 ENRWEEKGILAVYVSPLRALNNDIRRNLEEPLRGIEEKAREMGLEPPRVKVAVRTSDTTP 120
Query: 103 YRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILN 162
Y + K V++PPH+LITTPE+L A L R L V++VV+DE+ EL NKRGA L+++
Sbjct: 121 YEKQKMVKDPPHILITTPESLAAALAAPKFRERLSTVKWVVLDEIHELASNKRGAHLMVS 180
Query: 163 LKRLSLIA------DFIRIGLSATVGNEEEVKEWLGV--DE-------IVKPPLKKRYKF 207
++RL + RIGLSAT+ + V +LG DE IV K
Sbjct: 181 VERLEELVREAGGKPLRRIGLSATIAPLDVVANFLGGFDDEGRPREVHIVDARFAKPIDI 240
Query: 208 KVLFPRPRPEDKELAELLR--VDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRL 265
KV+ P +LLR D A R + E+V++H+ L+F NTR E + H+L
Sbjct: 241 KVITPD--------VDLLRDPPDKINEAIYRKIAELVKQHRTTLIFTNTRSATERVVHKL 292
Query: 266 K--------TWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAV 317
K +E HH SLS+ R++ E +LK G++K ++ ++S+ELGIDIG +D V
Sbjct: 293 KQILVKEGIASEDQIEAHHSSLSRNLRLDVEERLKRGELKVVVSSTSLELGIDIGYIDLV 352
Query: 318 IQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPY 377
I SP+ V+RL+QR GR+ HR+ +VS+ +I +D ++ ++A A++ ++R++
Sbjct: 353 ILLSSPKSVSRLLQRVGRAGHRIRDVSKGRLIVVDRDDLVECSVLADCAMKKFIDRVRIP 412
Query: 378 ENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVINV------LEDA 431
LDVLA IVG+ IE +K + + YR+ K Y +++L +E ++ V+ LE
Sbjct: 413 MKPLDVLAQHIVGMSIE-KKWRLEDAYRVVKRAYNFKDLSFEEFMSVVRFLAGKHGLEGE 471
Query: 432 GI-----IRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDL 486
G+ + EEG+ + A Y N+ IPDE +V GK +G L+E FV L
Sbjct: 472 GVYSKIWLDEEEGLFGRKKSARMIYLLNVGVIPDETKIRVY-TRDGKYVGDLEEEFVEIL 530
Query: 487 EEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRR 546
G F++ GR++ L+ +G +I V +++ +PSW E++P+ ++ A +VG RR
Sbjct: 531 VPGDVFVLGGRTYRFLKSEGLRVI--VERADDARPTVPSWFSEMLPLSFDSALKVGEFRR 588
Query: 547 TL----LYDPRKAPD-LIKGVEFNGEE------LELALNSLKQNTLIPSDRDIIITVLPD 595
+PR A + L+K E+ EE +E L L ++PSD+ ++I P
Sbjct: 589 VFSALASSNPRAAVEKLVK--EYYLEERAAATIVEYILEQLGYIGVVPSDKLVLIEYFPY 646
Query: 596 T----VIIHSDLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAPFKMNPN-EVK 650
++ H+ G +VN+ +SR L + G + ++ P+ +
Sbjct: 647 EDGWGIVFHTLFGRRVNDALSRAYAVALSRRIGLPVRVAVTDNGFMLTVSEAGKPDASLL 706
Query: 651 EILLKDY---DTKTIISKTIRDSTVYRWKMINVAKRMGALSKRARIR---------NVQK 698
E L++D + + I+ + I + + + + +VA RM + +R + + N QK
Sbjct: 707 EKLIRDVTPENIRGILEEAISRTELMKRRFKHVAARMFIVLRRYKGKEVSPERLQLNSQK 766
Query: 699 LFEGTIIEV-------ETLNEVFHDKVDVQKVEEVLKLIAKGEIRI 737
L E + E+ ET E+ D +D+ +VL+ I KGEI I
Sbjct: 767 LLEVFLEEMKDSPPIRETFREILEDYMDIGAAGKVLEWIRKGEIEI 812
>emb|CAC11727.1| (AL445064) hypothetical protein [Thermoplasma acidophilum]
Length = 1690
Score = 335 bits (850), Expect = 1e-90
Identities = 244/791 (30%), Positives = 410/791 (50%), Gaps = 79/791 (9%)
Query: 5 LKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMN---SILKDGL- 60
+ K + L Q A I G++VL+ +PTG+GKT A L ++N S+ K+G
Sbjct: 21 VSKWFNSNYSSLTEPQKYAIPLIHSGRNVLVSSPTGTGKTMTAFLTIINELVSLAKEGRL 80
Query: 61 -PPISCLYIAPLKALNRDLLERLKW------------WEAKTGIRIDVRHGDTTQYRRAK 107
+ C+YI+PLKAL D+ + LK+ +RI VR GDTT+ R K
Sbjct: 81 EDRVYCVYISPLKALANDINKNLKFPLDGIYSIMDSEGIKVPRVRISVRSGDTTESERQK 140
Query: 108 QVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLS 167
VR PPH+LITTPE+ L+ +R L+NVR+V++DE+ E+ KRG+ L NL+RL+
Sbjct: 141 MVRKPPHILITTPESFSLALSSPKMRENLRNVRYVIIDEIHEISSTKRGSLLSANLERLN 200
Query: 168 LIAD-FIRIGLSATVGNEEEVKEWL-GVD-------EIVKPPLKKRYKFKVLFPRPRPED 218
LI+ +RIGLSAT EE+ ++L G + EIV+ +K + + P P
Sbjct: 201 LISPGMVRIGLSATQSPIEEIAKYLVGFEGEKARPCEIVEVRGEKHLDLRTITPVP---- 256
Query: 219 KELAELLRVDVEVA--ARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWG-KPVEVH 275
+L RV EVA + ++V++++ L+F NTR E +A RLK+ G + +E H
Sbjct: 257 ----DLTRVSYEVANDRMYDIIADLVKQYRTTLIFTNTRSGTEHVAMRLKSRGIESLEAH 312
Query: 276 HGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
H S+ K+ R+E E KLK G+++ +I ++S+ELGIDIG +D VIQ SP+ V++ +QR GR
Sbjct: 313 HSSMGKDQRLEVENKLKNGELRCVITSTSLELGIDIGFIDLVIQIGSPKSVSKGLQRIGR 372
Query: 336 SKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEY 395
S H + E+S+ I ++D ++ ++ K A +++R+ +N LDVLA +VG+ +E
Sbjct: 373 SGHGVDELSKGIFIVFTLDDLVECAVLTKAAYSRQIDRVDIPKNPLDVLAQILVGMSLE- 431
Query: 396 QKLNVHEPYRMAKETYPYRNLKWEHYLEVINV----LEDAGI-----IRREEGILKLGRR 446
+ + E Y + + +Y + L E ++ ++ LE I + RE G R
Sbjct: 432 RVWRIEEAYDLLRNSYTFHELSHEEFMMTMDYLSGELESLSIYPKVWLDREAGTFGKKRS 491
Query: 447 AFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEFIMHGRSWLVLEIDG 506
YF N+ TIPDE +YK ++ GK +G L + FV L+ G F++ R++ + E
Sbjct: 492 TRMIYFMNVGTIPDEANYKAIN-EKGKNVGELSDKFVERLKTGDVFVLGARTY-IFEKTV 549
Query: 507 ENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRRTLL------YDPRKAPDLIK 560
N + VR ++ +PSW GE++P Y++ +G+ R + DP +
Sbjct: 550 RNRVY-VRSVTGMKPTVPSWTGEMLPRSYDLGVMIGQFRDRIASMIGSGEDPTEMLINEY 608
Query: 561 GVEFNGEELELALNSLKQNTLIPSDRDIIITVLPDT-----VIIHSDLGNKVNEGISRYI 615
V+ NG ++ + IP++ +I ++ +I H LG KVN+ +SR
Sbjct: 609 HVDENGARSIISYIKAQIEYGIPTENRALIEGYQESDGVYGLIFHVPLGRKVNDALSRAY 668
Query: 616 LGFLYSKYGRVFTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDTKTIISKTIRDSTVYRW 675
+ +KYG II+ K+ P E + + + ++ ++I ++ +++
Sbjct: 669 ALAISNKYGSNTRITITDDGFIIYTERKI-PIEEAVKTVNSSNFRDLVRRSIANTELFKQ 727
Query: 676 KMINVAKRMGALSK----------RARIRN------VQKLFEGTIIEVETLNEVFHDKVD 719
+ + A R + + R ++R+ +QK + +II ET E+ D +D
Sbjct: 728 RFRHCAARSLMVLRSYKGYDISVARQQLRSDRLLNELQKHEDFSIIR-ETYREIMEDLMD 786
Query: 720 VQKVEEVLKLI 730
V + E+ +K +
Sbjct: 787 VPRAEQYVKSV 797
>sp|O27830|HELX_METTH PUTATIVE ATP-DEPENDENT HELICASE MTH1802 >gi|7446115|pir||H69107
ATP-dependent helicase - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622934|gb|AAB86268.1| (AE000934) ATP-dependent
helicase [Methanobacterium thermoautotrophicum]
Length = 862
Score = 329 bits (834), Expect = 1e-88
Identities = 255/813 (31%), Positives = 403/813 (49%), Gaps = 90/813 (11%)
Query: 1 MHILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILK--- 57
+H + + + F + Q A I G++VL+ +PTGSGKT A L +++ + +
Sbjct: 18 LHPWVSEWFRRTFDDFTEAQRYAIMDIHRGRNVLVSSPTGSGKTLTAFLSIISELTRLAD 77
Query: 58 DGL--PPISCLYIAPLKALNRDL-------LERLKWWEAKTG----IRIDVRHGDTTQYR 104
DG + C+YI+PLKAL+ D+ L ++ A G IR VR GDTT Y
Sbjct: 78 DGELEDSVYCIYISPLKALDNDIERNLEEPLSAIRDIAAGEGRDLEIRKAVRTGDTTSYE 137
Query: 105 RAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLK 164
R++ ++ PPH+LITTPETL LL R L VR+V+VDE+ L DNKRG L L+L+
Sbjct: 138 RSRMLKKPPHILITTPETLSILLVAPKFREKLSTVRYVIVDEIHSLADNKRGVHLSLSLE 197
Query: 165 RLS-LIADFIRIGLSATVGNEEEVKEWL-----GVDE---IVKPPLKKRYKFKVLFPRPR 215
RL L+ DF RIGLSATV E V +L G + IV K ++ P
Sbjct: 198 RLQHLVGDFTRIGLSATVHPLERVARFLVGYSYGSERECLIVDVSYLKELDIDLICP--- 254
Query: 216 PEDKELAELLRVDVEVA--ARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTW----- 268
+ +++ D E A L +++E H+ L+F NTR E + + LK+
Sbjct: 255 -----VDDIVAADPEEIGNALYDILHDLIEDHRTTLIFTNTRSGTESVVYNLKSRFPESY 309
Query: 269 -GKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVN 327
+ HH SLS+E R+E E KLK G++KA++ ++S+ELGIDIG +D V+ SP+ V+
Sbjct: 310 SDSNIMAHHSSLSREIRLETEEKLKRGELKAVVSSTSLELGIDIGYIDLVVLLSSPKSVS 369
Query: 328 RLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHF 387
R +QR GRS H+L + S+ I+ +D ++ +I K A+EGK++ IK EN LDVLA
Sbjct: 370 RALQRIGRSGHQLHQRSKGRIVVVDRDDLVECSLILKNALEGKIDSIKVPENCLDVLAQH 429
Query: 388 IVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVINVLEDAGIIRREEGIL------ 441
I G+ IE ++ + + +Y YRNL E YL V++ L + E +
Sbjct: 430 IYGMAIE-NPWDIDHALAVIRNSYCYRNLSREDYLSVLSYLAGEYVELEERYVYAKIWVD 488
Query: 442 -------KLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEFIM 494
K G+ A Y N+ TIPD S VV G GKV+GR++E+F+ L +G F++
Sbjct: 489 YDKNQFGKRGKLARMLYSTNIGTIPDR-SAAVVKCG-GKVVGRIEEDFMEKLRKGDTFVL 546
Query: 495 HGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRRTL---LYD 551
GR + G + + V + IPSW E +P+ +++A ++ R R +
Sbjct: 547 GGRIYRFNYARG--MTVNVTPASG-PPTIPSWFSEQLPLSFDLALDIQRFRDIMDGKFQY 603
Query: 552 PRKAPDLIKGVEFNGEELELALNSL----KQNTL---IPSDRDIIITVLP-----DTVII 599
R ++++ + E A +S+ ++ L IPS R +++ ++
Sbjct: 604 GRSRDEIMEFIMSYLHVDERAASSIYEYFREQYLYAGIPSIRRMLVEYYTGFGGRKFIVF 663
Query: 600 HSDLGNKVNEGISRYILGFLYSKYGR---------VFTAKSQAHSIIIHAPFKMNPNEVK 650
HS G +VN+ ISR + + +Y R F S+ + A ++ P ++
Sbjct: 664 HSLFGRRVNDAISRAVAYVIARRYRRDVMISVSDNGFYLSSEGKMGGLEAFRELEPENLR 723
Query: 651 EILLKDYDTKTIISKTIRD----STVYRWKMINVAKRMGALSKRARI--RNVQKLFEGTI 704
+L K D ++ R + + + K +G R +I + V +L +
Sbjct: 724 NVLKKALDRTETLASRFRHCAGRALMILRRYRGEEKSVGRQQVRGKILLKFVSELDDKFP 783
Query: 705 IEVETLNEVFHDKVDVQKVEEVLKLIAKGEIRI 737
I E EV D +D++ VL+ I G++ I
Sbjct: 784 ILEEARREVMEDYMDIENAIRVLEWIRDGDMEI 816
>gi|11500031 large helicase-related protein (lhr-2) [Archaeoglobus fulgidus]
Length = 862
Score = 319 bits (809), Expect = 8e-86
Identities = 222/669 (33%), Positives = 353/669 (52%), Gaps = 68/669 (10%)
Query: 1 MHILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGL 60
+H L+++ K+ E Q A +G++VLI +PTGSGKT AA L ++ +++
Sbjct: 17 LHPLVREWFLSKYSEFTPPQKYAIVEAFKGRNVLITSPTGSGKTLAAFLAAISMLVEKAE 76
Query: 61 PP-----ISCLYIAPLKALNRDL-------LERLKWWEAKTGIRID-----VRHGDTTQY 103
+ +Y++PLKALN D+ LE + K GI++ VR GDT
Sbjct: 77 KGELEDRVYVVYVSPLKALNNDIRKNLEEPLEEIYALAEKKGIKLQKIRAAVRTGDTDAA 136
Query: 104 RRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNL 163
+ KQ R PPH+LITTPETL +L L NVRF++VDE+ + +NKRG L L++
Sbjct: 137 EKQKQARKPPHILITTPETLAIVLCSPKFSKSLTNVRFLIVDEIHAIAENKRGVHLTLSM 196
Query: 164 KRLSLI--ADFIRIGLSATVGNEEEVKEWL-----GVDE---IVKPPLKKRYKFKVLFPR 213
+RL I + +RIGLSAT+ EE+ +L G + I +K KV+ P
Sbjct: 197 ERLQRIQEGEMVRIGLSATISPLEEIARFLVGYNYGEERDCVIADVTFEKPMDIKVVSP- 255
Query: 214 PRPEDKELAELLRVDVE-VAARLRTLW-EIVEKHKRVLVFVNTRQFAEVLAHRLKTWGK- 270
+ + E ++ RL L E V+ K L+F NTR E + + LK K
Sbjct: 256 -------INDFFSASAEEISDRLYDLLAEYVKSSKTTLIFTNTRSATERVVYHLKKRLKD 308
Query: 271 -PVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRL 329
P++ HH SLSKE R+E E +LK G+++ ++ ++S+ELGIDIG +D VI SP+ +NR
Sbjct: 309 FPIKAHHSSLSKEVRLEVENELKNGELRCVVSSTSLELGIDIGYIDLVILLGSPKSINRA 368
Query: 330 IQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIV 389
+QR GRS HRL EVS I+ +D ++ ++AK A E +L+R+K LDVL +V
Sbjct: 369 LQRIGRSGHRLHEVSVGRIVVVDQDDLVECTVLAKEARERRLDRVKIPRKCLDVLCQHVV 428
Query: 390 GLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVI-------NVLEDAGIIRR-----E 437
G+ IE + +V E + + YPYR L E +L V+ + LE + + E
Sbjct: 429 GMAIE-KVWSVDEALALIRNAYPYRELTREEFLSVLRYLSGNFSELEKKKVYAKIWFDEE 487
Query: 438 EGIL-KLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEFIMHG 496
EG+ + G+ Y+ N TIPDEV+ KV+ GK +G+++E F +L G F++ G
Sbjct: 488 EGVFGRRGKMIRPIYYLNTGTIPDEVAVKVI-TKDGKRVGKVEEEFAENLLPGDIFVLAG 546
Query: 497 RSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRRTL--LYDPRK 554
+++ L+ G ++I V E E + +PSW E +P+ Y++A + + R + + + +
Sbjct: 547 KTFRFLKAKGMSII--VEEVEGEKPTVPSWFSEQLPLSYDLAERIRKFRGWMEEMLEKKS 604
Query: 555 APDLIKGVEFNGEELELALNSL-------KQNTLIPSDRDIIITVLP---DTVIIHSDLG 604
++I + N E A N++ K + IP+D +++ + H+ +G
Sbjct: 605 REEIIAILMENFEIERNAANAIYRYFMEQKLFSEIPTDSKLVVEKYEAERNYYFFHTLIG 664
Query: 605 NKVNEGISR 613
+ N I+R
Sbjct: 665 RRANSAIAR 673
>gb|AAK41239.1| ATP-dependent helicase [Sulfolobus solfataricus]
Length = 933
Score = 319 bits (808), Expect = 1e-85
Identities = 242/770 (31%), Positives = 395/770 (50%), Gaps = 74/770 (9%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
L+K I+EK + +L R+Q +F+ IS G + L+IAPTG GKTEAA+LP++N +LK+ + P+
Sbjct: 9 LRKLIEEKNWMKLTRVQEMSFEPISNGYNTLVIAPTGYGKTEAALLPILNRMLKEDVKPV 68
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
+ +YI PLKAL DLL R+ WW ++ G ++ +HG+ Q + +++ PH+++TTPE L
Sbjct: 69 TVIYITPLKALINDLLYRIDWWASRLGFLVNRKHGEVPQKEKNLRLKRIPHIIVTTPEGL 128
Query: 124 PALLTVKS-LRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIA--DFIRIGLSAT 180
L S R + KNV++VVVDE+ ELI++KRG QL + L+RL DF RIGLSAT
Sbjct: 129 EIDLDWASRFREHYKNVKWVVVDEIHELINSKRGTQLSILLERLKYFIGYDFQRIGLSAT 188
Query: 181 VGNEEEVKEWL-GVDE----IVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARL 235
V +E++V ++L G E I++ + ++ K+ D A + A ++
Sbjct: 189 VSDEDKVAQFLFGSSERKMKIIRLNDTRNFEIKI---NKLGNDNSFA----LWKSAAEKI 241
Query: 236 RTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWG-KPVEVHHGSLSKEARIEAERKLKEG 294
L E K LVF N+R E L L+ G K + VHH S+S++ + AE +L+ G
Sbjct: 242 NQLIE-----KPTLVFTNSRFSTERLHEELEKLGNKEIYVHHSSVSRDLKNLAEGELRNG 296
Query: 295 KVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVE 354
KA++CT ++ELGI +G++ VI P V+ +QR GRS H + V + II
Sbjct: 297 NAKAVVCTKTLELGIHVGDIKKVIMLRPPTSVSSFLQRLGRSGHIVHGVPKGEIICFYDF 356
Query: 355 DYLQSLIIAKRAIEGKLERIKPY-ENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPY 413
D L+SL + A +GK+E KP+ ++ LDV+A IVG++++ QK+++ E + + + TY Y
Sbjct: 357 DVLESLALYLSAKDGKME--KPFIDDGLDVVAREIVGMILQNQKMSIEEIFNIIRGTYIY 414
Query: 414 RNLKWEHYLEVINVLEDAGIIRREEGILKLGRRAFKYYFDN--------------LSTIP 459
RNL+ L+++N L II+ EE LKLG+ FK + N S I
Sbjct: 415 RNLELSKLLDLVNYLVKNNIIKIEENYLKLGQGFFKIWRFNRDAKNSWGKDFSEFFSLIN 474
Query: 460 DEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEFI-MHGRSWLVLEIDGENLIIKVRESEN 518
++ ++ + +G +G +D +V + I + G+ W VL I+ I V +
Sbjct: 475 NDETFSLKH--NGITVGEIDAVYVYKHVRANDIIRISGKFWKVLRINMHKNTIDVTPANE 532
Query: 519 IEGAIPSWEGELI---PVPYEVAREVGR------LRRTLLYDPRKAPDLIKGVEFNGEEL 569
EG IP W+GE + P+ R++ L + D +IK E
Sbjct: 533 GEGEIPIWKGENMSKSPLIVNYIRKIMENFNEYYLTMNEIMDKNSKESIIKIFE------ 586
Query: 570 ELALNSLKQNTLIPSDRDIIITVLPDTVIIHSDLGNKVNEGISRYILGFLYSKYGRVFTA 629
N K IPS I++ D + + +++ +S +L + KY T
Sbjct: 587 ----NYRKLGLKIPSRDVILVENKEDEWLYTVVIDERISNTLSHILLYLVTKKY----TL 638
Query: 630 KSQAHSIIIHAPFKMNPNEVKEILLKDYDTK--TIISKTIRDSTVYRWKMINVAKRMGAL 687
+ + S I K P ++ + ++ D K II ++I S +Y + + G +
Sbjct: 639 NASSRSSIYGFSIKGTPVDLFKDIINMNDRKIIKIILRSILRSPLYIATLKEIQPSFGKI 698
Query: 688 SKRARIRNVQKLFEGTIIEVETLNEVFHDKVDVQKVEEVLKLIAKGEIRI 737
SK E + E L + ++K E ++ + +G+I+I
Sbjct: 699 SK-------INTKEDKFLIKEALRQTIKRYFTIKKTLEFIRRVREGKIKI 741
>gb|AAK40467.1| ATP-dependent helicase [Sulfolobus solfataricus]
Length = 875
Score = 315 bits (799), Expect = 1e-84
Identities = 237/806 (29%), Positives = 405/806 (49%), Gaps = 86/806 (10%)
Query: 7 KAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDG-----LP 61
K ++K+ Q A I + +VL+ +PTGSGKT AA L +++S+ + G
Sbjct: 22 KWFRQKYTTFTPPQRAAIPLIKQNYNVLVSSPTGSGKTLAAFLGILDSLFELGDNNELED 81
Query: 62 PISCLYIAPLKALNRDL-------LERLKWWEAKT-GIRIDVRHGDTTQYRRAKQVRNPP 113
+ +YI+PL+ALN D+ L L+ +K +R+ +R DTT Y + K ++ PP
Sbjct: 82 KVYAIYISPLRALNNDMQRNLLEPLNELRQVNSKLPDVRVGIRTSDTTPYEKQKMLKKPP 141
Query: 114 HVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNL---KRLSLIA 170
H+LITTPE+ +T L +V++++VDE+ EL ++KRGA L L + L
Sbjct: 142 HILITTPESFGISITSPKFSQKLTDVKWIIVDEIHELANSKRGAYLSAMLELFRNLITKK 201
Query: 171 DFIRIGLSATVGNEEEVKEWL-GVDE---IVKPPLKKRYKFKVLFPRPRPEDKELAELLR 226
+F+RIGLSATV EEV ++L G D IV K KV+ P K+L
Sbjct: 202 EFVRIGLSATVSPLEEVAQFLVGKDREYRIVDARFVKPVDIKVISPV-----KDLVHSSE 256
Query: 227 VDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGK--------PVEVHHGS 278
+V+ +T+ V+KH+ L+F NTR E +A++L+ + +E HH S
Sbjct: 257 SEVDKGI-YKTILNEVKKHRTTLIFTNTRHATERVAYKLRKLAENEKVFDVDAIEAHHSS 315
Query: 279 LSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKH 338
LS++ R++ E KLK+G +K ++ ++S+ELGIDIG +D VI SP+ V+RL+QR GR+ H
Sbjct: 316 LSRDVRLDVEEKLKKGILKVVVSSTSLELGIDIGYIDLVILLSSPKSVSRLLQRIGRAGH 375
Query: 339 RLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKL 398
+ +S+ +I +D ++ ++AK A + K++ I +N LDVL+ IV + +
Sbjct: 376 HIRSISKGRVIVVDRDDLVECSVLAKLARDRKIDSIHIPKNPLDVLSQIIVSASL-ISPI 434
Query: 399 NVHEPYRMAKETYPYRNLKWEHYLEVINVLED-----------AGIIRREEGILKLGRRA 447
+ + +++ + +Y + +L Y V+ L A I +EE I+ + +
Sbjct: 435 DRDDLFKILRRSYNFSDLSESDYSLVLRYLSGDFFGVELKNVYAKIRIKEEKIIYPKKGS 494
Query: 448 FKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEFIMHGRSWLVLEIDGE 507
++ N TIPDE VV + + +G L+E FV L G F++ GR++ + G
Sbjct: 495 RLIFYTNSGTIPDEAMISVV-TENNRYVGNLEEEFVEILSPGDIFVLSGRTYEFIGSKGS 553
Query: 508 NLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRRTLLYDPRKAPDLIKGVEFNGE 567
+I+K E+ +PSW E++P+ YE A E+G+ RR + +K + +E +
Sbjct: 554 KVIVK--EAMGQRPTVPSWFSEMLPLAYESALEIGKFRREIAEMIKKGVTHNEIIESISK 611
Query: 568 ELELALNS------------LKQNTLIPSDRDIIITVLPD-----TVIIHSDLGNKVNEG 610
E E+ ++ L N +PSD I+I + D I H+ G + +
Sbjct: 612 EYEIDKHASMSIYTYILEQYLFTNGKVPSDNLILIEIYDDEEGIRNYIFHALYGRRALDA 671
Query: 611 ISR---YILGFLYSKYGRV-FTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDTKTIISKT 666
+SR Y++ RV T A S+ PF N + E + D + I+++
Sbjct: 672 LSRAFAYVVSEELDTDVRVSVTDNGFALSVKRDVPFDYNIKSLFEKITPD-NVYDIVTRA 730
Query: 667 IRDSTVYRWKMINVAKRMGALSKRARIRNV--------QKLFEGTIIEV-------ETLN 711
+ + + + + + A+R + +R + R ++ I E+ ET+
Sbjct: 731 VMRTEMLKRRFRHCAERSFMILRRYKGRETNLERRELNSEILLKAIREIGNFPVMKETIR 790
Query: 712 EVFHDKVDVQKVEEVLKLIAKGEIRI 737
E+ D +D+ + +E+LK IA EI++
Sbjct: 791 EILEDHMDILRAKEILKKIASQEIKV 816
>sp|P95949|HELX_SULSO PUTATIVE ATP-DEPENDENT HELICASE C04010 >gi|7446117|pir||S75377
probable helicase LHR - Sulfolobus solfataricus
>gi|1707782|emb|CAA69580.1| (Y08257) ATP-dependent
helicase [Sulfolobus solfataricus]
Length = 875
Score = 315 bits (799), Expect = 1e-84
Identities = 237/806 (29%), Positives = 405/806 (49%), Gaps = 86/806 (10%)
Query: 7 KAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDG-----LP 61
K ++K+ Q A I + +VL+ +PTGSGKT AA L +++S+ + G
Sbjct: 22 KWFRQKYTTFTPPQRAAIPLIKQNYNVLVSSPTGSGKTLAAFLGILDSLFELGDNNELED 81
Query: 62 PISCLYIAPLKALNRDL-------LERLKWWEAKT-GIRIDVRHGDTTQYRRAKQVRNPP 113
+ +YI+PL+ALN D+ L L+ +K +R+ +R DTT Y + K ++ PP
Sbjct: 82 KVYAIYISPLRALNNDMQRNLLEPLNELRQVNSKLPDVRVGIRTSDTTPYEKQKMLKKPP 141
Query: 114 HVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNL---KRLSLIA 170
H+LITTPE+ +T L +V++++VDE+ EL ++KRGA L L + L
Sbjct: 142 HILITTPESFGISITSPKFSQKLTDVKWIIVDEIHELANSKRGAYLSAMLELFRNLITKK 201
Query: 171 DFIRIGLSATVGNEEEVKEWL-GVDE---IVKPPLKKRYKFKVLFPRPRPEDKELAELLR 226
+F+RIGLSATV EEV ++L G D IV K KV+ P K+L
Sbjct: 202 EFVRIGLSATVSPLEEVAQFLVGKDREYRIVDARFVKPVDIKVISPV-----KDLVHSSE 256
Query: 227 VDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGK--------PVEVHHGS 278
+V+ +T+ V+KH+ L+F NTR E +A++L+ + +E HH S
Sbjct: 257 SEVDKGI-YKTILNEVKKHRTTLIFTNTRHATERVAYKLRKLAENEKVFDVDAIEAHHSS 315
Query: 279 LSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKH 338
LS++ R++ E KLK+G +K ++ ++S+ELGIDIG +D VI SP+ V+RL+QR GR+ H
Sbjct: 316 LSRDVRLDVEEKLKKGILKVVVSSTSLELGIDIGYIDLVILLSSPKSVSRLLQRIGRAGH 375
Query: 339 RLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKL 398
+ +S+ +I +D ++ ++AK A + K++ I +N LDVL+ IV + +
Sbjct: 376 HIRSISKGRVIVVDRDDLVECSVLAKLARDRKIDSIHIPKNPLDVLSQIIVSASL-ISPI 434
Query: 399 NVHEPYRMAKETYPYRNLKWEHYLEVINVLED-----------AGIIRREEGILKLGRRA 447
+ + +++ + +Y + +L Y V+ L A I +EE I+ + +
Sbjct: 435 DRDDLFKILRRSYNFSDLSESDYSLVLRYLSGDFFGVELKNVYAKIRIKEEKIIYPKKGS 494
Query: 448 FKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEFIMHGRSWLVLEIDGE 507
++ N TIPDE VV + + +G L+E FV L G F++ GR++ + G
Sbjct: 495 RLIFYTNSGTIPDEAMISVV-TENNRYVGNLEEEFVEILSPGDIFVLSGRTYEFIGSKGS 553
Query: 508 NLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRRTLLYDPRKAPDLIKGVEFNGE 567
+I+K E+ +PSW E++P+ YE A E+G+ RR + +K + +E +
Sbjct: 554 KVIVK--EAMGQRPTVPSWFSEMLPLAYESALEIGKFRREIAEMIKKGVTHNEIIESISK 611
Query: 568 ELELALNS------------LKQNTLIPSDRDIIITVLPD-----TVIIHSDLGNKVNEG 610
E E+ ++ L N +PSD I+I + D I H+ G + +
Sbjct: 612 EYEIDKHASMSIYTYILEQYLFTNGKVPSDNLILIEIYDDEEGIRNYIFHALYGRRALDA 671
Query: 611 ISR---YILGFLYSKYGRV-FTAKSQAHSIIIHAPFKMNPNEVKEILLKDYDTKTIISKT 666
+SR Y++ RV T A S+ PF N + E + D + I+++
Sbjct: 672 LSRAFAYVVSEELDTDVRVSVTDNGFALSVKRDVPFDYNIKSLFEKITPD-NVYDIVTRA 730
Query: 667 IRDSTVYRWKMINVAKRMGALSKRARIRNV--------QKLFEGTIIEV-------ETLN 711
+ + + + + + A+R + +R + R ++ I E+ ET+
Sbjct: 731 VMRTEMLKRRFRHCAERSFMILRRYKGRETNLERRELNSEILLKAIREIGNFPVMKETIR 790
Query: 712 EVFHDKVDVQKVEEVLKLIAKGEIRI 737
E+ D +D+ + +E+LK IA EI++
Sbjct: 791 EILEDHMDILRAKEILKKIASQEIKV 816
>pir||A69140 ATP-dependent helicase - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621366|gb|AAB84818.1| (AE000816)
ATP-dependent helicase [Methanobacterium
thermoautotrophicum]
Length = 702
Score = 262 bits (662), Expect = 1e-68
Identities = 175/542 (32%), Positives = 279/542 (51%), Gaps = 38/542 (7%)
Query: 13 FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLK 72
+R L +Q A + I G+ LI+APT SGKTEAA++PV NSIL +GLPP+S LY++PLK
Sbjct: 20 WRSLRDVQKSALEAIGRGEDTLIVAPTASGKTEAALIPVFNSILSEGLPPVSMLYVSPLK 79
Query: 73 ALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKS- 131
AL D+ RL+ W + + HGD R+ + ++NP +L+ TPE+L ++ +S
Sbjct: 80 ALINDMHSRLELWGNHFNLEVMKWHGDVPANRKRRFIKNPSDILLITPESLEVMMINRSR 139
Query: 132 --LRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADF--IRIGLSATVGNEEEV 187
L N+R+++VDE+ + I+ RG QL L RL RIGLSATVGN EEV
Sbjct: 140 AEKERILGNLRYIIVDEIHQFIEADRGVQLNSLLARLERYTGVRPQRIGLSATVGNPEEV 199
Query: 188 KEWLGVD-EIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHK 246
W+ +V+ +++ ++++ +L E+LR K
Sbjct: 200 LNWMSPSGAVVRDTAERKLQYRIF----ELNHHKLIEVLRRFT---------------GK 240
Query: 247 RVLVFVNTRQFAEVLAHRL-KTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSM 305
+VL+FV +R+ AE + + K V +HH S+++++R EAE + + ++ TS++
Sbjct: 241 KVLIFVPSRRDAEKYYNIIRKCLDVDVFIHHSSINRDSREEAEERFRSVSAAFMVNTSTL 300
Query: 306 ELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKR 365
ELGID+G++D VI SP VNR +QR GRS R I ++ L +L +A
Sbjct: 301 ELGIDVGDIDVVIHIRSPTSVNRFLQRTGRSGRRR---GLQRTIIFQEKEALTALSVASL 357
Query: 366 AIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVI 425
A+ G+LE ++ LD+ H I+ + E +K + YR + + +L + + ++
Sbjct: 358 ALSGRLEDLRIPVRPLDIYFHQILSSVFELEKPTPGDIYRGLGRAHVFSDLDADDFRHLV 417
Query: 426 NVLEDAGIIRREEGILKLGRRAFK-----YYFDNLSTIPDEVSYKVVDIGSGKVIGRLDE 480
+ + +R + G K + + + P + V KVIG LD
Sbjct: 418 EFMVENDFLRVHGPYIHHGFNFEKTFGKMNFLEFYTVFPPNYEFTVKH--RTKVIGSLDS 475
Query: 481 NFVMD-LEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAR 539
FV+ L+ G FI+ G W+V +ID E I++V+ + IP W P +EVAR
Sbjct: 476 FFVVTYLKVGRGFILGGEKWVVKDIDHERFIVRVKPCTR-DAEIPDWSSGGAPTTFEVAR 534
Query: 540 EV 541
V
Sbjct: 535 HV 536
>pir||F83237 probable ATP-dependent DNA helicase PA3272 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9949397|gb|AAG06660.1|AE004749_9 (AE004749) probable
ATP-dependent DNA helicase [Pseudomonas aeruginosa]
Length = 1448
Score = 257 bits (649), Expect = 5e-67
Identities = 197/592 (33%), Positives = 303/592 (50%), Gaps = 56/592 (9%)
Query: 2 HILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLP 61
H ++++ + F Q+EA+ I EG S L+ APTGSGKT A L +++++ +GL
Sbjct: 22 HPVVRQWFERHFAAPTPAQVEAWPAIREGLSTLVAAPTGSGKTLTAFLAAIDALVVEGLA 81
Query: 62 P-------ISCLYIAPLKALNRDL-------LERLKWWEAKTG-----IRIDVRHGDTTQ 102
+Y++PLKAL+ D+ L ++ A+ G IR VR GDT Q
Sbjct: 82 AGGELADATQVVYVSPLKALSNDIRINLEQPLAGIREELARLGLPDVDIRSAVRTGDTPQ 141
Query: 103 YRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILN 162
R + PPH+L+TTPE+L LL +S R L VR V+VDE+ L +KRG+ L L+
Sbjct: 142 VERGAMRKRPPHILVTTPESLYILLGSESGRQMLAGVRSVIVDEIHALAGSKRGSHLALS 201
Query: 163 LKRLSLIAD--FIRIGLSATVGNEEEVKEWL-GVDEIVKPPLKKRYKFKVLFPRPRPEDK 219
L+RL + +RIGLSAT E+V +L G + P + V + RPR
Sbjct: 202 LERLQALCPRPLLRIGLSATQKPIEKVARFLVGASGNPRDPACRIVD--VGYTRPRDLGI 259
Query: 220 ELAELLRVDVEVAARLRTLWEIVE--------KHKRVLVFVNTRQFAE----VLAHRLKT 267
E+ V +E A WE+V +H+ LVFVNTR+ AE LA RL +
Sbjct: 260 EVPP---VALE-AVMSNDTWELVYDRLAHLAGEHRTTLVFVNTRRMAERVTRFLAERLGS 315
Query: 268 WGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVN 327
+ V HHGSL+KE R++AE++LK G++K L+ T+S+ELGIDIG+V+ V Q SPR +
Sbjct: 316 --RQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDVELVCQLSSPRSIA 373
Query: 328 RLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHF 387
+QR GRS H + + + T +D ++ + G+L+ + LDVLA
Sbjct: 374 AFLQRVGRSGHSVGGTPKGRLFPTSRDDLVECAALLDSVRRGELDSLVLPRQPLDVLAQQ 433
Query: 388 IVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVINVLED---------AGIIRRE- 437
IV + Q+ + YR+ PY L+ E + EV+ +L + + R+
Sbjct: 434 IVA-EVACQEWREDDLYRLVIRAEPYAGLERERFDEVLRMLAEGYHSRLGVRGAYLHRDA 492
Query: 438 -EGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGSGKVIGRLDENFVMDLEEGMEFIMHG 496
G+L+ R A + TIPD Y V+ G ++G ++E+F ++ G F +
Sbjct: 493 LNGLLRGRRGARLTALTSGGTIPDTGDYSVLLEPQGLLVGTVNEDFAVESLAGDVFQLGN 552
Query: 497 RSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGRLRRTL 548
S+ ++ I+ ++V +++ IP W GE E++ V RLR TL
Sbjct: 553 TSYRIIRIEPGR--VRVEDAQGQPPNIPFWLGEAPGRSDELSASVARLRDTL 602
>sp|P30015|LHR_ECOLI PROBABLE ATP-DEPENDENT HELICASE LHR (LARGE HELICASE-RELATED
PROTEIN) >gi|7466703|pir||G64922 probable ATP-dependent
helicase lhr (EC 3.6.1.-) - Escherichia coli
>gi|993028|gb|AAC37009.1| (L01622) RNA helicase-like
protein [Escherichia coli] >gi|1742726|dbj|BAA15419.1|
(D90809) Probable ATP-dependent helicase Lhr (EC
3.6.1.-) (Large helicase- related protein). [Escherichia
coli] >gi|1787942|gb|AAC74725.1| (AE000260) member of
ATP-dependent helicase superfamily II [Escherichia coli
K12]
Length = 1538
Score = 249 bits (628), Expect = 1e-64
Identities = 226/844 (26%), Positives = 370/844 (43%), Gaps = 132/844 (15%)
Query: 13 FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDG---------LPPI 63
F++ +Q + + + + L+IAPTGSGKT AA L ++ + ++G
Sbjct: 27 FKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTS 86
Query: 64 SCLYIAPLKALNRDLL------------ERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRN 111
LYI+P+KAL D+ ER + E + +R+ +R GDT R+K RN
Sbjct: 87 RILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN 146
Query: 112 PPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLS--LI 169
PP +LITTPE+L +LT ++ R L+ V V++DEV + +KRGA L L+L+RL L
Sbjct: 147 PPDILITTPESLYLMLTSRA-RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH 205
Query: 170 ADFIRIGLSATVGNEEEVKEWLGVDE---IVKPPLKKRYKFKVLFPRPRPEDKELAELLR 226
RIGLSATV + +V +LG D +V PP + + +++ P +D
Sbjct: 206 TSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGT 265
Query: 227 VDVEVAARLRTLWEIVE--------KHKRVLVFVNTRQFAEVLAHRL------------- 265
+ A R ++W +E +H+ +VF N+R AE L RL
Sbjct: 266 GEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPS 325
Query: 266 ---------KTWGKP-----------VEVHHGSLSKEARIEAERKLKEGKVKALICTSSM 305
T G HHGS+SKE R E+ LK G+++ ++ TSS+
Sbjct: 326 IAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSL 385
Query: 306 ELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKR 365
ELGID+G VD VIQ +P V +QR GR+ H++ VS+ D + S +I +
Sbjct: 386 ELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVEC 445
Query: 366 AIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLK---WEHYL 422
G+LE + P N LDVLA V L V E Y + P+++L ++ L
Sbjct: 446 MFAGRLENLTPPHNPLDVLAQQTVA-AAAMDALQVDEWYSRVRRAAPWKDLPRRVFDATL 504
Query: 423 EVINVLEDAG---------IIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVV-----D 468
++++ +G + RE GIL A + TIPD Y V+ +
Sbjct: 505 DMLSGRYPSGDFSAFRPKLVWNRETGILTARPGAQLLAVTSGGTIPDRGMYSVLLPEGEE 564
Query: 469 IGSGKVIGRLDENFVMDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEG 528
+ +G LDE V + + SW + +I + +I V + +P W G
Sbjct: 565 KAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQITRDQVI--VTPAPGRSARLPFWRG 622
Query: 529 ELIPVPYEVAREVGRLRRTLLYDPRKAPDLIKGVEFNG-------EELELA----LNSLK 577
E P E+ +G L G F+G EE +A L +
Sbjct: 623 EGNGRPAELGEMIGDFLHL----------LADGAFFSGTIPPWLAEENTIANIQGLIEEQ 672
Query: 578 QNT--LIPSDRDIIITVLPD-----TVIIHSDLGNKVNEGISRYILGFLYSKYGRVFTAK 630
+N ++P R +++ D +I+HS G +V+E + I G +++ +G +
Sbjct: 673 RNATGIVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWAVAIAGRIHALWGADASVV 732
Query: 631 SQAHSIIIHAP-----------FKMNPNEVKEILLKDYDTKTIISKTIRDSTVYRWKM-- 677
+ I+ P F P ++ +I+ + + + + R+ M
Sbjct: 733 ASDDGIVARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARFRECAARALLMPG 792
Query: 678 INVAKRMGALSKRARIRNVQKLFEG---TIIEVETLNEVFHDKVDVQKVEEVLKLIAKGE 734
R +R R + ++ +G + +ETL E D D+ +E +++ + GE
Sbjct: 793 RTPGHRTPLWQQRLRASQLLEIAQGYPDFPVILETLRECLQDVYDLPALERLMRRLNGGE 852
Query: 735 IRIT 738
I+I+
Sbjct: 853 IQIS 856
>pir||A70982 probable ATP-dependent helicase lhr - Mycobacterium tuberculosis
(strain H37RV) >gi|1877351|emb|CAB07060.1| (Z92771) lhr
[Mycobacterium tuberculosis]
Length = 1513
Score = 238 bits (600), Expect = 3e-61
Identities = 232/824 (28%), Positives = 370/824 (44%), Gaps = 121/824 (14%)
Query: 20 QIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPIS-------CLYIAPLK 72
Q A+ I++G + L+IAPTGSGKT AA L ++S+ G P+S LY++PLK
Sbjct: 31 QASAWAAIADGDNTLVIAPTGSGKTLAAFLWALDSLA--GSEPMSERPAATRVLYVSPLK 88
Query: 73 ALNRDLLERLKWWEA------------KTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTP 120
AL D+ L+ A IR+ VR GDT R + V PP VLITTP
Sbjct: 89 ALAVDVERNLRTPLAGLTRLAERQGLPAPQIRVGVRSGDTPPALRRQLVSQPPDVLITTP 148
Query: 121 ETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIAD---FIRIGL 177
E+L +LT + R L V+ V++DE+ + KRGA L L+L+RL ++ RIGL
Sbjct: 149 ESLFLMLT-SAARQTLTGVQTVIIDEIHAIAATKRGAHLALSLERLDDLSSRRRAQRIGL 207
Query: 178 SATVGNEEEVKEWLGVDE---IVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDV--EVA 232
SATV EE+ +L IV PP K + V P P ++A L + +V
Sbjct: 208 SATVRPPEELARFLSGQSPTTIVAPPAAKTVELSVQVPVP-----DMANLTDNTIWPDVE 262
Query: 233 ARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRL--------------------------- 265
ARL +++E H +VF N+R+ AE L RL
Sbjct: 263 ARLV---DLIESHNSTIVFANSRRLAERLTARLNEIHAARCGIELAPDTNQQVAGGAPAH 319
Query: 266 -----KTWGKP---VEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAV 317
+T+G P HHGS+SKE R E LK G++KA++ TSS+ELGID+G VD V
Sbjct: 320 IMGSGQTFGAPPVLARAHHGSISKEQRAVVEEDLKRGQLKAVVATSSLELGIDMGAVDLV 379
Query: 318 IQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPY 377
IQ +P V +QR GR+ H++ E+S + D L + +R + G++E ++
Sbjct: 380 IQVQAPPSVASGLQRIGRAGHQVGEISRGVLFPKHRTDLLGCAVSVQRMLAGEIETMRVP 439
Query: 378 ENALDVLA-HFIVGLLIEYQKLNVHEPYRMAKETYPYRNLK---WEHYLEVIN------- 426
N LD+LA H + +E L+ + + P+ L +E L++++
Sbjct: 440 ANPLDILAQHTVAAAALE--PLDADAWFDTVRRAAPFATLPRSLFEATLDLLSGKYPSTE 497
Query: 427 --VLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKV-VDIGSGKVIGRLDENFV 483
L + R+ G L A + + IPD + V + +G LDE V
Sbjct: 498 FAELRPRLVYDRDTGTLTARPGAQRLAVTSGGAIPDRGLFAVYLATERPSRVGELDEEMV 557
Query: 484 MDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAREVGR 543
+ G + SW + EI + +++ + +P W G+ P E+ +G
Sbjct: 558 YESRPGDVISLGATSWRITEITHDRVLVIPAPGQ--PARLPFWRGDDAGRPAELGAALGA 615
Query: 544 LRRTLLYDPRKA-PDLIKGVEFNG---EELELALNSLKQNT-LIPSDRDIIITVLPD--- 595
L L R A G+ F+ + L L+ + T ++P+D +++ D
Sbjct: 616 LTGELAALDRTAFGTRCAGLGFDDYATDNLWRLLDDQRTATAVVPTDSTLLVERFRDELG 675
Query: 596 --TVIIHSDLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAPFKMNPNEVK--- 650
VI+HS G +V+ ++ + L +YG + + I++ P ++ E
Sbjct: 676 DWRVILHSPYGLRVHGPLALAVGRRLRDRYGIDEKPTASDNGIVVRLPDTVSAGEDSPPG 735
Query: 651 -EILLKDYD-TKTIISKTIRDSTVYRWKMINVAKRMGALSKR---------------ARI 693
E+ + D D I++ + S ++ + A R L +R AR+
Sbjct: 736 AELFVFDADEIDPIVTTEVAGSALFASRFRESAARALLLPRRHPGRRSPLWQQRQRAARL 795
Query: 694 RNVQKLFEGTIIEVETLNEVFHDKVDVQKVEEVLKLIAKGEIRI 737
V + + I +ET+ E D DV + E++ IA+ +R+
Sbjct: 796 LEVARKYPDFPIVLETVRECLQDVYDVPILVELMARIAQRRVRV 839
>pir||T35694 ATP dependent DNA helicase - Streptomyces coelicolor
>gi|3294249|emb|CAA19862.1| (AL031031) ATP dependent DNA
helicase [Streptomyces coelicolor A3(2)]
Length = 1690
Score = 233 bits (589), Expect = 5e-60
Identities = 207/712 (29%), Positives = 323/712 (45%), Gaps = 99/712 (13%)
Query: 20 QIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP-----ISCLYIAPLKAL 74
Q A++ IS+G VL++APTGSGKT AA L ++ + P LY++PLKAL
Sbjct: 31 QAGAWQAISQGSDVLVVAPTGSGKTLAAFLAALDQLTSTPPPADPKKRCRVLYVSPLKAL 90
Query: 75 NRDLLERLKWWEAKTGIR--------------IDVRHGDTTQYRRAKQVRNPPHVLITTP 120
D+ L+ TGIR + +R GDT R PP +LITTP
Sbjct: 91 AVDVERNLR--SPLTGIRQESVRLGLPEPEVKVGIRSGDTPAAERRALSTRPPDILITTP 148
Query: 121 ETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLS--LIADFIRIGLS 178
E+L +LT + R L + V++DEV + KRGA L L L+RL L RIGLS
Sbjct: 149 ESLFLMLT-SATRDALTGIETVILDEVHAVAGTKRGAHLALTLERLDELLPKPARRIGLS 207
Query: 179 ATVGNEEEVKEWL---GVDEIVKPPLKKRYKFKVLFP---------RPRPEDKELAELLR 226
ATV +EV +L G EIV+P K + V+ P P E E AE
Sbjct: 208 ATVRPVDEVARFLAPRGRVEIVQPESGKEFDLSVVVPVEDLGELGGSPVAEGNEGAERPS 267
Query: 227 VDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRL------KTWGKPVE------- 273
+ V R+ ++V+ H+ +VF N+R+ AE L +RL + G+P++
Sbjct: 268 IWPHVEERIT---DLVQSHRSTIVFANSRRLAERLCNRLNEIAYERATGEPLDEHHSPAE 324
Query: 274 -----------------VHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDA 316
HHGS+SKE R E LK G++ A++ TSS+ELGID+G VD
Sbjct: 325 LMGGSGAAQGAPPVIARAHHGSVSKEQRALVEEDLKAGRLPAVVATSSLELGIDMGAVDL 384
Query: 317 VIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKP 376
V+Q SP V +QR GR+ H++ VS + D +QS ++ +R G +E ++
Sbjct: 385 VVQVESPPSVASGLQRVGRAGHQVGAVSTGVVFPKYRGDLVQSAVVTERMRSGAIEALRI 444
Query: 377 YENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVINVL-----EDA 431
N LDVLA +V + V + + P+ +L + V+++L DA
Sbjct: 445 PANPLDVLAQQLVA-MTALDTWQVDDLLTTVRRAAPFASLPESAFTAVLDMLAGRYPSDA 503
Query: 432 -------GIIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIGS-----GKVIGRLD 479
+ R G + A + + TIPD + V G+ G +G LD
Sbjct: 504 FAELRPRVVWDRVAGTVTGRPGAQRLAVTSGGTIPDRGLFGVFLAGADPKKGGGRVGELD 563
Query: 480 ENFVMDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSWEGELIPVPYEVAR 539
E V + G F + SW + +I + ++ V + + G +P W+G+ + P E+ R
Sbjct: 564 EEMVYESRVGDVFTLGTSSWRIEDITRDRVL--VSPAPGVPGRLPFWKGDQLGRPLELGR 621
Query: 540 EVGRLRR---TLLYDPRKAPDLIKGVEFNGEELELALNSLKQNTL--IPSDRDIIITVLP 594
+G R +L + + + G++ + L+ ++ +P DR I++
Sbjct: 622 ALGAFLREVGSLSKEDARLRLVTAGLDAWAADNVLSYLDEQREACGHVPDDRTIVVERFR 681
Query: 595 D-----TVIIHSDLGNKVNEGISRYILGFLYSKYGRVFTAKSQAHSIIIHAP 641
D V++HS G +V+ + + L +YG I++ P
Sbjct: 682 DELGDWRVVVHSPFGAQVHAPWALALGARLSERYGMDAQVMHADDGIVLRLP 733
>pir||G71051 probable ATP-dependent helicase LHR - Pyrococcus horikoshii
>gi|3257526|dbj|BAA30209.1| (AP000005) 1352aa long
hypothetical ATP-dependent helicase LHR [Pyrococcus
horikoshii]
Length = 1352
Score = 194 bits (487), Expect = 5e-48
Identities = 127/334 (38%), Positives = 187/334 (55%), Gaps = 42/334 (12%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLP-- 61
L+++ K KF Q A I +G++VLI +PTGSGKT +A L +++ ++ G
Sbjct: 24 LVREWFKRKFNSFTPPQRYAIVEIHKGENVLISSPTGSGKTLSAFLAIISELISLGRKGK 83
Query: 62 ---PISCLYIAPLKALNRDL-------LERLKWWEAKTG-----IRIDVRHGDTTQYRRA 106
I C+YI+PL+ALN D+ L +K + G IRI VR DT+ Y ++
Sbjct: 84 LEDKIYCVYISPLRALNNDIRRNLEEPLREIKELAQELGEEIPEIRIAVRTSDTSSYEKS 143
Query: 107 KQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRL 166
K V+ PPH+LITTPE+L L R L++VR+V+VDEV L +NKRG+ L L L+RL
Sbjct: 144 KMVKKPPHILITTPESLAIALNAPKFRERLRDVRWVIVDEVHALAENKRGSHLALTLERL 203
Query: 167 SLIA--DFIRIGLSATVGNEEEVKEWL-GVDE--------IVKPPLKKRYKFKVLFPRPR 215
+ DF+RIGLSAT+ EEV +++ G ++ IV K+ + KV
Sbjct: 204 RELVGRDFVRIGLSATIHPLEEVAKFVFGFNDDGTPRSGLIVDVSFAKQTEIKV------ 257
Query: 216 PEDKELAELLRVDVEVA--ARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLK----TWG 269
+ + +L+ D E A L E++ KHK L+F NTR AE +A LK +
Sbjct: 258 --ESVVEDLIYTDAETLSNALYNRLAELIRKHKTTLIFTNTRSGAERVAFNLKKRFPEFK 315
Query: 270 KPVEVHHGSLSKEARIEAERKLKEGKVKALICTS 303
+E HH SLS+E R++ E KLK G+++A++C S
Sbjct: 316 GLIETHHSSLSREVRLDVEEKLKRGELRAVVCVS 349
Score = 170 bits (427), Expect = 5e-41
Identities = 165/640 (25%), Positives = 296/640 (45%), Gaps = 74/640 (11%)
Query: 188 KEWLGVDEIVKPPLKKRYK-------FKVLFPRPRPEDKELAELLRVDVEVAARLRTLWE 240
KEW E V P L+KR K + + R EL ++++ E AR R L +
Sbjct: 715 KEW----EDVIPNLEKRLKEIEEKLGYPGTYNRREIRRSELKAIIKL-YEKVARERGLND 769
Query: 241 IVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPV--EVHHGSLSKEARIEAERKLKEGKVKA 298
++++ L ++ ++ R+ T +PV +V +G ++ E + G V
Sbjct: 770 VLKE----LSYLKELSEGDIFFDRI-TSIEPVYLDVAYGIINSETG----NYVVNGFVSK 820
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQ 358
TS +ELGIDIG +D V+ SP+ VNR +QR GR+ HRL EVS I+A +D ++
Sbjct: 821 NSSTS-LELGIDIGTIDLVVLVGSPKSVNRALQRIGRAGHRLHEVSRGIILALDRDDLVE 879
Query: 359 SLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKW 418
++A A KL+RIK +N LDVL I+G+ +E + + E YR+ + YPY L +
Sbjct: 880 VTVLAHNARNRKLDRIKIPKNPLDVLVQHILGMALE-KVWEIEEAYRVVRRAYPYHELPF 938
Query: 419 EHYLEVINVL--EDAGI--------IRREEGILKLGRR---AFKYYFDNLSTIPDEVSYK 465
++ V+ L E +G+ I E G K GRR Y+ N TIPDE
Sbjct: 939 SDFMNVLKYLAGEYSGLEEKRVYAKIWLENG--KFGRRGKMTRAIYYMNTGTIPDEAKID 996
Query: 466 VVDIGSGKVIGRLDENFVMDLEEGMEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPS 525
V + K IG ++E F L G F++ GR++ ++ G + + R E + IPS
Sbjct: 997 VFTLDK-KYIGTVEEEFAERLMPGDIFVLAGRTYEFVKSRGNKIYVIPR--EGAKPTIPS 1053
Query: 526 WEGELIPVPYEVAREVGRLR---RTLLYDPRKAPDLIKGVEFNGEELELALNSLKQN--- 579
W E++P+ +++A ++ R R + LL R L+K + + ++ ++
Sbjct: 1054 WFSEMLPLSFDLAIDIQRFRGEVKKLLTSKRAESLLMKKYGIDNVTAKAIISYFREQAKY 1113
Query: 580 TLIPSDRDIIITVLPD----TVIIHSDLGNKVNEGISRYILGFLYSKYGRV---FTAKSQ 632
++IP D +++ ++ + H+ +G + N+ +SR ++ SK +
Sbjct: 1114 SIIPDDETVLVEIVREGNVTKYFFHTLIGRRANDALSR-AFAYMISKKKKCNVGIAITDN 1172
Query: 633 AHSIIIHAPFKMNPNEVKEILLKDYDTKTIISKTIRDSTVYRWKMINVAKR----MGALS 688
+ + ++ E+ E+ + + + I+ + + ++ + + + +VA R +
Sbjct: 1173 GFMLKVPVDKELKEGEILELFYVE-NLREILKRALDNTELLKRRFRHVANRGLLILRRYM 1231
Query: 689 KRARIRNVQKLFEGTIIEV------------ETLNEVFHDKVDVQKVEEVLKLIAKGEIR 736
R + + Q++ T++ E E+ DK+D++ E LK I +G+I+
Sbjct: 1232 GREKSLSRQQMNAQTLLNFLKKNHPNFPLLKEVYREIMEDKMDIENAELFLKWIKEGKIK 1291
Query: 737 ITGRILNEPEEIDKEHGTISMEFMVSLHHTDEEIVELFKQ 776
+T R P I +V + E I EL K+
Sbjct: 1292 VTVREHPYPSPFAFNLEVIGASDVVLMEDRRELIKELHKK 1331
>pir||T35049 probable ATP-dependent helicase - Streptomyces coelicolor
>gi|3483040|emb|CAA20551.1| (AL031371) putative
ATP-dependent helicase [Streptomyces coelicolor A3(2)]
Length = 731
Score = 187 bits (471), Expect = 4e-46
Identities = 162/550 (29%), Positives = 270/550 (48%), Gaps = 37/550 (6%)
Query: 15 ELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKAL 74
+L LQ A + EG+ +++APT GKTEAA P+++++ + S LY+ PLKAL
Sbjct: 35 DLRPLQRAAITPLMEGEDAVLLAPTAGGKTEAACFPLLSAMAEQKWTGTSVLYLCPLKAL 94
Query: 75 NRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLT-VKSLR 133
+L+ R+ + G R + HGDT + +R + P VL+TTPE+L A+L VK+
Sbjct: 95 LNNLVSRVDTYTQWLGRRAALWHGDTKESQRQRIRTEAPDVLLTTPESLEAMLIGVKTDH 154
Query: 134 P-YLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIA--DFIRIGLSATVGNEEEVKEW 190
L +VR VVVDEV + RG L+ L+RL + RIGLSATVGN +++ +W
Sbjct: 155 ARLLGSVRAVVVDEVHAFAGDDRGWHLLAVLERLEQVTGRPIQRIGLSATVGNPDQLLDW 214
Query: 191 L---GVD----EIVKPPLKKRYKFKVLFPRPRPEDKELAELL-RVDVEVAARLRTLWEIV 242
L GV+ +V P + F+ + +P +E+ V+++ L +++
Sbjct: 215 LQGAGVETRAGRVVAPGVTLP-AFEAVGSDRKPTAEEVPRPAGEVELDYVGSLDNAAKLI 273
Query: 243 ---EKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKAL 299
+ ++ LVF ++R E L L+ V + H SLS + R +E+ E + +
Sbjct: 274 ATLHRGEKRLVFCDSRAQVEQLGAALRAREVTVFLSHASLSVDERTRSEQAFAEARDCVI 333
Query: 300 ICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQS 359
+ TS++ELGID+G++D VIQ SP V +QR GR+ R V + T + LQ+
Sbjct: 334 VSTSTLELGIDVGDLDRVIQIDSPATVASFLQRIGRTGRRAGTVRNCLFLTTRKDTLLQA 393
Query: 360 LIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWE 419
+ G +E +KP ++A ++ + ++ KL R P+ +
Sbjct: 394 AGLLLLWSRGWVEPVKPPPEPRHLVAQQLLAVTLQQHKLGDQLWDRQWNGLAPFD----Q 449
Query: 420 HYLEVINVLEDAGIIRREEGILKLG----RRAFKYYFDNLS---TIPDEVSYKVVDIGSG 472
++ L + G + + G+L +G RR K +F L+ T P + + + SG
Sbjct: 450 SAAPILRHLTEEGFLDSDGGLLFVGPEAERRFGKRHFIELTASFTAPPQFT-----VLSG 504
Query: 473 KV-IGRLDENFVMDLEEG-MEFIMHGRSWLVLEIDGENLIIKVRESENIEGAIPSW-EGE 529
+ IGR D + + + G ++ GRSW V ID + V +++ G I W G
Sbjct: 505 RTEIGRTDPSVLTEERPGPRRLLLGGRSWQVTYIDWLRKRVFVEPADS--GGIAKWMNGG 562
Query: 530 LIPVPYEVAR 539
+ + Y + R
Sbjct: 563 IAGLTYALTR 572
>gb|AAK40384.1| ATP-dependent helicase [Sulfolobus solfataricus]
Length = 739
Score = 145 bits (361), Expect = 3e-33
Identities = 106/341 (31%), Positives = 176/341 (51%), Gaps = 23/341 (6%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LKK+I E L + Q +A+++I ++V+II+ TG+GKTEA ++P+++ LK
Sbjct: 44 LKKSIIEYGIERLYKYQYDAYRKIKNKENVMIISGTGTGKTEAFLIPILDLALKGE---- 99
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
+ + P KAL RD L R+ + G+ + + GDT + R + RNPPH+LIT P+ +
Sbjct: 100 RSVLVYPTKALARDQLTRVYKLARELGLNVGIFDGDTPEKERERLYRNPPHILITNPDMI 159
Query: 124 PALLTVKS-LRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRI-GLSATV 181
L + + R L+ + DEV + + GA + R+ + I I SATV
Sbjct: 160 HLGLALSTRFRFLLRTADHFIFDEV-HVYEGVLGAHIRNLADRIKEFKNDIHIVASSATV 218
Query: 182 GNEEEV-KEWLGVDEIVKPPLKKRYKFKV--LFPRPRPEDKELAELLRVDVEVAARLRTL 238
G + + +E GV+ + +++R + + LA L
Sbjct: 219 GATKYLFEELFGVEGEIIEGIRRRKGIAIHSIIDSGNSSRWTLAAYLAA----------- 267
Query: 239 WEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+V+ +VLVF +++Q AE++A + +EVH L E RI+ E KL+ G++
Sbjct: 268 -VLVKNGLKVLVFTDSQQMAELVAKIADRFRVNLEVHRAGLIAEERIKVEEKLRNGELDG 326
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHR 339
++ T ++ELGIDIG +DAVI +P + +QRAGR+ R
Sbjct: 327 VVATPTLELGIDIGTIDAVIMAENPPSYTKYVQRAGRAGRR 367
>gi|11499982 ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus]
>gi|7446072|pir||G69550 ATP-dependent RNA helicase
homolog AF2406 - Archaeoglobus fulgidus
>gi|2650686|gb|AAB91259.1| (AE001109) ATP-dependent RNA
helicase, putative [Archaeoglobus fulgidus]
Length = 766
Score = 125 bits (312), Expect = 2e-27
Identities = 98/328 (29%), Positives = 155/328 (46%), Gaps = 22/328 (6%)
Query: 10 KEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIA 69
K L Q EA R+ EG+ V+I APTG GKTEA +P++ L G +
Sbjct: 80 KRGIGRLYPFQKEAMIRLMEGRDVVITAPTGFGKTEAFAVPMLWRALHGG----KAMVFY 135
Query: 70 PLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPA-LLT 128
P KAL RD E++K++ + G+R GD+ + R + +++T P+ + L
Sbjct: 136 PTKALARDQEEKIKFYTSSLGLRAVRFDGDSGREERRAVLSGKCDIILTNPDMVDYHLRN 195
Query: 129 VKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVK 188
+ R + + F+ VDE+ G+ + +KRLS A+F SAT+ N E
Sbjct: 196 TPAFRRICRELSFIAVDEL-HTYTGVLGSNMHYLVKRLSRFAEFQIACASATLSNAAEFA 254
Query: 189 EWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRV 248
E L + V + R L R P L E+ LR ++++
Sbjct: 255 EELFDRDFVLVSGEHRKGTLHLIFRYTPS------LYSAVREIVTALR--------NRKI 300
Query: 249 LVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELG 308
+VF N+ + E + L+ G +H L KE R E E K K G++ ++ T ++ELG
Sbjct: 301 IVFGNSYKSVETINLILRRHGLKSAIHKSGLPKEVREEVEAKFKRGEINIVVSTPTLELG 360
Query: 309 IDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
+DIG+VD V+ + P ++IQR GR+
Sbjct: 361 VDIGDVDVVVSELVP--YGQMIQRVGRA 386
>pir||E71073 hypothetical protein PH1280 - Pyrococcus horikoshii
>gi|3257700|dbj|BAA30383.1| (AP000005) 715aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 715
Score = 122 bits (304), Expect = 1e-26
Identities = 137/501 (27%), Positives = 227/501 (44%), Gaps = 66/501 (13%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKR-ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP 62
+K+ +K++ EL Q EA I +G++ LI PT SGKT A + ++N +LK+G
Sbjct: 12 IKEVLKKRGISELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKA 71
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+ Y+ PLKAL + + K WE + G+++ + GD Y + ++I T E
Sbjct: 72 V---YLVPLKALAEEKFKEFKDWE-ELGLKVAMATGD---YDSKDEWLGGYDIIIATAEK 124
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+LL S +++NV+ +VVDE+ + RGA L + ++ A I GLSAT+G
Sbjct: 125 FDSLLRHGS--SWIRNVKVLVVDEIHLIGSRDRGATLEFIITQMLNRAQII--GLSATIG 180
Query: 183 NEEEVKEWLGVDEIVKP--PLKKR----YKFKVLFPRPRPEDKELAELLRVD-------- 228
N EE+ EWL I P+K R Y+ V + + E E L D
Sbjct: 181 NPEELAEWLNAKLIKSDWRPVKLRRGVFYQGFVFWEDGKTEKFNSWEELVYDAIKRSKGS 240
Query: 229 -VEVAARLRTLWEIVEKHKRVLVFVNTRQFAEV--LAHRL----------KTWGKPVEVH 275
V V R + +E K++ F+ ++ E+ LA L K V H
Sbjct: 241 LVFVNMRRKAEKTALELSKKIRNFLTKKELRELKELAESLEENPTNEKLAKALQGGVAFH 300
Query: 276 HGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVI-----------QYMSPR 324
H L +E R+ E K+G +K ++ T ++ GI+ ++ + +
Sbjct: 301 HAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVRDTWRYSEFGMERIPIL 360
Query: 325 QVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVL 384
++ +++ RAGR K+ EV EA I++T E + +R I+GK E++ + +L
Sbjct: 361 EIQQMMGRAGRPKYD--EVGEAIIVSTTEE----PSTVMERYIKGKPEKLFSQLSNESIL 414
Query: 385 AHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLE------VINVLEDAGI---IR 435
I+ L+ + + E Y + T+ K + LE V +LE+ I +
Sbjct: 415 RGQILALIATFNFSSFREIYDFLERTFYAYQGKDPYTLEDRIRDIVYFLLENEFIEITLD 474
Query: 436 REEGILKLGRRAFKYYFDNLS 456
E L LG R K Y D ++
Sbjct: 475 DEIKALPLGIRTAKLYIDPMT 495
>pir||F69164 ATP-dependent RNA helicase homolog MTH492 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621563|gb|AAB84998.1| (AE000833) ATP-dependent RNA
helicase, eIF-4A family [Methanobacterium
thermoautotrophicum]
Length = 822
Score = 119 bits (296), Expect = 1e-25
Identities = 142/530 (26%), Positives = 242/530 (44%), Gaps = 65/530 (12%)
Query: 16 LNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALN 75
L R Q EA I EG ++LI PT SGKT A LP+M ++ + P + LYI P+KAL+
Sbjct: 53 LYRHQREALDAIREGMNILITTPTASGKTLAFNLPIMETLTLN--PDATALYIYPVKALS 110
Query: 76 RDLLERLKWWEAKTGIRID--VRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVK-SL 132
RD L L+ E++ G++++ GDT + RR +R V++T P L +L
Sbjct: 111 RDQLGVLEELESELGLKLNPSTYDGDTPRERRP-WIRENSRVILTNPHQLHRILPWHHQW 169
Query: 133 RPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIR-----IGLSATVGNEEEV 187
R + N+R+VV+DE + G+ + L L+RL I + + SAT+ N E
Sbjct: 170 RRFYSNLRYVVIDEAHQY-RGVFGSNVALLLRRLRRICRYYGSEPQFVLASATLANPAEF 228
Query: 188 KEWL-GVDEIVKPPLKKRYKFKVLFPRPRPEDKE---LAELLRVDVEVAARLRT---LWE 240
L G+D F+V+ P + L R + +A L T L
Sbjct: 229 SRKLTGLD------------FRVISDDTSPSGPKHFILYNPYRKRGDPSAHLETSAILSY 276
Query: 241 IVEKHKRVLVFVNTRQFAEVLAH---------RLKTWGKPVEVHHGSLSKEARIEAERKL 291
+V + + L F +R+ AE++ K + G L+++ R E L
Sbjct: 277 LVLRGVQTLCFTISRKMAELVTRWTREQLDRENRKLVDRVTSYRAGYLAEQRR-RIEADL 335
Query: 292 KEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIAT 351
KEG++ + T+++ELGIDIG +DAVI P + Q+AGR+ L ++ +I
Sbjct: 336 KEGRLLGVTATNALELGIDIGSLDAVIISGYPGTMISTWQQAGRAGRNL---KDSMVILV 392
Query: 352 GVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETY 411
E+ L I+ + + +P+ENA+ L + L++ Q + + +
Sbjct: 393 AFENPLDQYIMKNPSFIFE----RPHENAIIDLQN---RLILRNQTACAASELPLILDDF 445
Query: 412 PYRNLKWEHYLEVI-NVLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVDIG 470
L+++ + V +L D + +G+ G F+Y D++S V I
Sbjct: 446 ----LEYDFSVGVAGEMLADGELELAPDGLTCSGDPQFRYGLDDVSQDTFTV------IC 495
Query: 471 SGKVIGRLDEN-FVMDLEEGMEFIMHGRSWLV--LEIDGENLIIKVRESE 517
G+V+ + + + EG + HG ++ V +++G +I+ R+ E
Sbjct: 496 EGRVLETMSRSQAYREAHEGAVLMNHGNTYTVRDFDLEGRRIIVDRRDVE 545
>pir||F71092 ATP-dependent RNA helicase homolog PH1003 - Pyrococcus horikoshii
>gi|3257417|dbj|BAA30100.1| (AP000004) 873aa long
hypothetical helicase [Pyrococcus horikoshii]
Length = 873
Score = 119 bits (295), Expect = 2e-25
Identities = 155/667 (23%), Positives = 294/667 (43%), Gaps = 125/667 (18%)
Query: 10 KEKFRELNRL-----------QIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKD 58
K K RE+N L Q++A + GK+V++ PT SGK+E L + +S L++
Sbjct: 30 KFKNREVNELVKRLGFRLYSHQVKALNLLYSGKNVVVSTPTASGKSEIFRLFIFDSFLEN 89
Query: 59 GLPPISCLYIAPLKALNRDLLERL----KWWEAKTGIRI--DVRHGDTTQYRRAKQVRNP 112
P + L + P +AL + +E+ K + TG+++ + GD R K VRN
Sbjct: 90 --PSSTFLLVYPTRALINNQMEKFDNENKVFAEITGMKVKASILTGDVDWSERKKIVRNK 147
Query: 113 PHVLITTPETL-----PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGA---------- 157
P+V+ TTP+ L P L K L LKN++ +VVDE + RG
Sbjct: 148 PNVIFTTPDMLHHTILPRWLEYKWL---LKNLKLLVVDE----LHTYRGVFGSNVAYVFR 200
Query: 158 QLILNLKRLSLIADFIRIGLSATVGNEEEVKE---WLGVDEIVKPPLKKRYKFKVLFPRP 214
++ L+RL+ + + + LSAT+ N +E E +E+ + ++ ++F
Sbjct: 201 RVFFRLRRLN--SSPLILALSATLRNPKEFAESFFGFEFEEVTEAGNPSPRRYIIMFEPK 258
Query: 215 RPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRL--KTWGKPV 272
R ++L + + + +++ + + LVF ++R+ E + + +
Sbjct: 259 RFSGEQLIK------------QVIDKLIRNNVKTLVFFDSRKGTERIMRMFLFSEFFDKI 306
Query: 273 EVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQ-VNRLIQ 331
+ G+L+K R + ER +EG +K L+ T+++ELGID+G++DAVI Y P + LIQ
Sbjct: 307 TTYKGTLTKLERWKIERDFREGNLKVLLATNALELGIDVGDLDAVINYGIPSDGLFSLIQ 366
Query: 332 RAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGL 391
R GR+ V+ + +I+ K ++ Y+ D L I
Sbjct: 367 RFGRAGRDPNRVA------------INGIILRKNGLD------YYYKEHFDELVEGIEKG 408
Query: 392 LIEYQKLNV--------HEPYRMAKETYPYRNLKWEHYLEVINVLEDAGIIRREEGIL-- 441
L++ +N+ H Y +++ ++ E++++V+ L+ GI+ + +
Sbjct: 409 LVDKIPVNLGNEKIAKKHLHYLLSELGVVGKDEIPEYWVKVLEDLKHEGIVDEYKNPITG 468
Query: 442 KLGRRAFK-YYFDNLSTIPDEVSYKVVDIG-----------------------SGKVIGR 477
K R K + ++ T DE + V+D G G +I
Sbjct: 469 KFEVRVRKPAVYSSIRTASDESFFLVIDEGWIRRTLRRKRGIELLRFINYLKARGLIIEE 528
Query: 478 LDE-NFVMDLEEGMEFIMHGRSWLV---LEIDGENLII--KVRESENIEGAIPSWEGELI 531
+DE F L GM + GR ++ L+++ N + ++ +E++E + E I
Sbjct: 529 VDEVEFHRSLLPGMVYPSRGRLYMAVDRLKVEKFNFVFAREIPMNEDLETNVSKVESVEI 588
Query: 532 PVPYEVAREVGRLRRTLLYDPRKAPDLIKGVEFNGEELEL---ALNSLKQNTLIPSDRDI 588
YE + +G ++ + + + G G+++E L LK ++ + ++
Sbjct: 589 LNTYE-GKNIGPVK--VYFGRIRVKQEYNGYAVKGKDVEKHVDRLEKLKDEGILRGEVEV 645
Query: 589 IITVLPD 595
+T+ D
Sbjct: 646 AVTMFED 652
>pir||B75135 DNA helicase related protein PAB0592 - Pyrococcus abyssi (strain
Orsay) >gi|5458306|emb|CAB49795.1| (AJ248285) DNA
HELICASE RELATED PROTEIN [Pyrococcus abyssi]
Length = 715
Score = 117 bits (290), Expect = 6e-25
Identities = 135/513 (26%), Positives = 224/513 (43%), Gaps = 90/513 (17%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKR-ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP 62
+K+ ++E+ EL Q EA + EG+++L+ PT SGKT A + + N +L++G
Sbjct: 12 IKEILRERGIEELYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKLLEEG--- 68
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+YI PLKAL + K WE + G+++ + GD Y + ++I T E
Sbjct: 69 GKAVYIVPLKALAEEKFREFKDWE-RLGLKVAMATGD---YDSKDEWLGKYDIIIATAEK 124
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+LL S ++++V+ +V+DE+ + RGA L + ++ A IGLSAT+G
Sbjct: 125 FDSLLRHGS--SWIRDVKMLVIDEIHLIGSRDRGATLEFIITQMLGRAQI--IGLSATIG 180
Query: 183 NEEEVKEWLGVDEIVKP--PLKKR----YKFKVLFPRPRPEDKELAELLRVDVEVAARLR 236
N EE+ EWL I P+K R Y+ V + E E L
Sbjct: 181 NPEELAEWLNAKLIRSDWRPVKLRKGVFYQGFVFWEDGGSERYNSWEEL----------- 229
Query: 237 TLWEIVEKHKRVLVFVNTRQFAEVLAHRL------------------------------- 265
+++ V+K K LVFVN R+ AE A L
Sbjct: 230 -VYDAVKKGKGALVFVNMRRKAEKTALELAKKVKNYLDRKELRELRELAESLEENPTNEK 288
Query: 266 --KTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVI----- 318
K V HH L ++ R+ E ++G +K ++ T ++ GI+ +I
Sbjct: 289 LAKALLSGVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINTPAFRVIIRDTWR 348
Query: 319 ------QYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLE 372
+ + +V +++ RAGR ++ EV EA I++T E L + I+GK E
Sbjct: 349 YSEFGMERIPVLEVQQMMGRAGRPRYD--EVGEAIIVSTTEEPSL----VIDHYIKGKPE 402
Query: 373 RIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLE------VIN 426
++ + +L I+ L+ + E Y + T+ K + LE +
Sbjct: 403 KLFSQLSNESILRSQILALIATFGYSEFKEIYDFLERTFYAHQGKDPYMLEEKIRRIIYF 462
Query: 427 VLEDAGI-IRREEGI--LKLGRRAFKYYFDNLS 456
+LE+ I + E+ I L LG R K Y D ++
Sbjct: 463 LLENEFIEVTLEDEIKPLPLGVRTTKLYIDPMT 495
>pir||T43854 helicase [imported] - Pyrococcus furiosus
>gi|3374506|dbj|BAA32016.1| (AB016521) helicase
[Pyrococcus furiosus]
Length = 720
Score = 115 bits (284), Expect = 3e-24
Identities = 139/510 (27%), Positives = 222/510 (43%), Gaps = 90/510 (17%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKR-ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP 62
+K +KE+ Q EA K I EGK+ LI PT SGKT A + +++ IL G
Sbjct: 12 IKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKA 71
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+ YI PLKAL + + + WE K G+R+ + GD Y + ++I T E
Sbjct: 72 V---YIVPLKALAEEKFQEFQDWE-KIGLRVAMATGD---YDSKDEWLGKYDIIIATAEK 124
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+LL S ++K+V+ +V DE+ + RGA L + L + A I GLSAT+G
Sbjct: 125 FDSLLRHGS--SWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQII--GLSATIG 180
Query: 183 NEEEVKEWLGVDEIVKP--PLKKR----YKFKVLFPRPRPEDKELAELLRVDVEVAARLR 236
N EE+ EWL + IV P+K R Y+ V + ED + ++
Sbjct: 181 NPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTW-----EDGSIDRF-------SSWEE 228
Query: 237 TLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKP------------------------- 271
+++ + K K L+FVN R+ AE +A L K
Sbjct: 229 LVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEK 288
Query: 272 --------VEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVI----- 318
V HH L ++ R+ E ++G +KA++ T ++ GI+ +I
Sbjct: 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWR 348
Query: 319 ------QYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLE 372
+ + +V++++ RAGR K+ EV E I++T +D + + I GK E
Sbjct: 349 YSDFGMERIPIIEVHQMLGRAGRPKYD--EVGEGIIVSTS-DDPRE---VMNHYIFGKPE 402
Query: 373 RIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLE------VIN 426
++ + L ++ L+ + V E + T+ K + LE +
Sbjct: 403 KLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYF 462
Query: 427 VLEDAGI-IRREEGI--LKLGRRAFKYYFD 453
+LE+ I I E+ I L LG R K Y D
Sbjct: 463 LLENEFIEISLEDKIRPLSLGIRTAKLYID 492
>sp|P50830|YPRA_BACSU HYPOTHETICAL HELICASE IN PONA-COTD INTERGENIC REGION
>gi|7446091|pir||B69941 ATP-dependent RNA helicase
homolog yprA - Bacillus subtilis
>gi|1146178|gb|AAB38468.1| (L47838) helicase [Bacillus
subtilis] >gi|2634641|emb|CAB14139.1| (Z99115) similar
to ATP-dependent helicase [Bacillus subtilis]
Length = 749
Score = 114 bits (282), Expect = 5e-24
Identities = 140/544 (25%), Positives = 241/544 (43%), Gaps = 77/544 (14%)
Query: 10 KEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIA 69
K EL Q AF+ + +G+S++ + PT SGKT LPV+ SI +D LY+
Sbjct: 49 KRGIDELYTHQYSAFQYVQKGESIVTVTPTASGKTLCYNLPVLQSIAQDETN--RALYLF 106
Query: 70 PLKALNRDLLERLKWWEAKTGIRID--VRHGDTTQYRRAKQVRNPPHVLITTPETLPALL 127
P KAL +D L + GI I GDT+ R K VR H++IT P+ L + +
Sbjct: 107 PTKALAQDQKSELNEIIDEMGIDIKSFTYDGDTSPAIRQK-VRKAGHIVITNPDMLHSAI 165
Query: 128 TVKSLR--PYLKNVRFVVVDEVTEL--IDNKRGAQLILNLKRLSLI--ADFIRIGLSATV 181
+ +N++++V+DE+ + A +I LKR+ +D + I SAT+
Sbjct: 166 LPHHTKWVSLFENLKYIVIDELHTYRGVFGSHVANVIRRLKRICRFYGSDPVFICTSATI 225
Query: 182 GNEEEVKEWLG------VDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARL 235
N +E+ E L VD+ P +K + +F P +K L EV
Sbjct: 226 ANPKELGEQLTGKPMRLVDDNGAPSGRKHF----VFYNPPIVNKPLNIRRSATAEVNELA 281
Query: 236 RTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTW------GKPVEVHHGSLSKEARIEAER 289
+ E ++ + +VF +R E++ ++ K + + G + R E ER
Sbjct: 282 K---EFLKNKVQTIVFARSRVRVEIILSHIQELVKKEIGTKSIRGYRGGYLPKERREIER 338
Query: 290 KLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYII 349
L+EG + ++ T+++ELG+DIG++ + P V Q+AGR+ R E+ II
Sbjct: 339 GLREGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRR---HGESLII 395
Query: 350 ----ATGVEDYL--QSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEP 403
+T ++ Y+ R+ E RI P EN + +L+++ K +E
Sbjct: 396 MVANSTPIDQYIVRHPEYFFNRSPES--ARINP-ENLI---------ILVDHLKCAAYE- 442
Query: 404 YRMAKETYPYRNLKWEHYLEVINVLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVS 463
P+R + +EV ++LE +EE +L R +Y++ + S +S
Sbjct: 443 -------LPFRADEEFGAMEVSDILE----YLQEEAVLH--RNGERYHWASESFPASNIS 489
Query: 464 YKVV-----------DIGSGKVIGRLDENFVMDLEEGMEFIMH-GRSWLVLEIDGENLII 511
+ DI + ++IG +D M L +H G + V ++D ++
Sbjct: 490 LRSASQENVVIVDQSDIANVRIIGEMDRFSAMTLLHDEAIYLHEGVQYQVEKLDWDHKKA 549
Query: 512 KVRE 515
VR+
Sbjct: 550 YVRK 553
>pir||E64496 ATP-dependent RNA helicase homolog MJ1574 - Methanococcus
jannaschii >gi|1592195|gb|AAB99590.1| (U67597)
ATP-dependent RNA helicase, eIF-4A family, putative
[Methanococcus jannaschii]
Length = 684
Score = 113 bits (279), Expect = 1e-23
Identities = 131/505 (25%), Positives = 225/505 (43%), Gaps = 85/505 (16%)
Query: 10 KEKFRELNRL-----------QIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKD 58
K K +E+N L Q++A K + K V++ T SGK+E L + ++ L +
Sbjct: 29 KFKNKEINELIDALGFKLYLHQVKALKYLYNKKDVVVTTSTASGKSEIFRLAIFDNFLSN 88
Query: 59 GLPPISCLYIAPLKALNRDLLER------LKWWEAKTGIRIDVRHGDTTQYRRAKQVRNP 112
P L I P +AL + E+ L + ++ ++ GD +R + +++
Sbjct: 89 --PDDRYLLIYPTRALINNQYEKFSMENELFYKITNKRVKAEILTGDVGLEKRREILKDK 146
Query: 113 PHVLITTPETLPALLTVKSLRPYL---KNVRFVVVDEVTELIDNKRGAQLILNLKRLSLI 169
P+VL TTP+ L + +K+ YL KN++ +VVDE+ + G ++ KRL +
Sbjct: 147 PNVLFTTPDMLHYQI-LKNHNNYLWLLKNLKLLVVDEL-HVYRGVFGTNMVYVFKRLLKL 204
Query: 170 ADFIR-----IGLSATVGNEEEV------KEWLGVDEIVKPPLKKRYKFKVLFPRPRPED 218
+ + LSAT+ N +E +++ VD+ P +K P++
Sbjct: 205 LKRLNNNLQILCLSATLKNPKEFVKLLFNRDFEVVDKSYNPSSRKYLAIL------EPKN 258
Query: 219 KELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRL---KTWGKPVEVH 275
+ +LLR R + +V+ + + LVF +TR+ E L L K + K + +
Sbjct: 259 LDNKQLLR---------RLIENLVDNNIKTLVFFDTRKETEKLMRFLLNSKVFYK-LSTY 308
Query: 276 HGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQY-MSPRQVNRLIQRAG 334
G+L K R E E K K G++ AL+ T+++ELGIDIG++DAVI Y + P + LIQR G
Sbjct: 309 KGTLPKYVREEIEEKFKNGEILALLTTNALELGIDIGDLDAVINYGIPPDGIFSLIQRFG 368
Query: 335 RSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIE 394
R+ R E ++ DY Y+ L+ L I +IE
Sbjct: 369 RAGRRDKEALNIIVLRKDGLDYY-------------------YKEHLNELYERIRKGIIE 409
Query: 395 YQKLNVHEPYRMAKET-YPYRNLKWEHYLEVINVLEDAGIIRREEGILKLG--------- 444
Y +N+ + K Y LK + E+ + ++ EG +K+
Sbjct: 410 YMPVNIKNRFVTKKHLHYLISELKIVDFDELNDFEKEIVKELEREGKIKIYKNPITNKTE 469
Query: 445 -RRAFKYYFDNLSTIPDEVSYKVVD 468
R + + ++ T DE Y ++D
Sbjct: 470 IRNVKQPIYSSIRTASDESYYLILD 494
>gi|11500032 SKI2-family helicase [Archaeoglobus fulgidus]
Length = 691
Score = 109 bits (271), Expect = 1e-22
Identities = 127/496 (25%), Positives = 210/496 (41%), Gaps = 72/496 (14%)
Query: 10 KEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIA 69
+E EL Q EA +++ GK++L+ PT +GKT A + ++ +K G LY+
Sbjct: 20 EEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGG----KSLYVV 75
Query: 70 PLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTV 129
PL+AL + E K WE K G+RI + GD Y + +++TT E +L +
Sbjct: 76 PLRALAGEKYESFKKWE-KIGLRIGISTGD---YESRDEHLGDCDIIVTTSEKADSL--I 129
Query: 130 KSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIR-IGLSATVGNEEEVK 188
++ ++K V +VVDE+ L KRGA L + + ++ + +R IGLSAT N E+
Sbjct: 130 RNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIA 189
Query: 189 EWLGVDEIVKPPLKKRYKFKVLFPRPRPED---KELAELLRVDVEVAARLR---TLWEIV 242
EWL D Y P P E + EL + R++ + E V
Sbjct: 190 EWLDAD----------YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV 239
Query: 243 EKHKRVLVFVNTRQFAEVLAHRLKT-WGKPVE---------------------------- 273
++ VLVF +TR+ AE A +L K VE
Sbjct: 240 AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGA 299
Query: 274 -VHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQ-------YMSPRQ 325
HH L R E + G +K ++ T ++ G+++ +++ Y +
Sbjct: 300 AFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIK 359
Query: 326 VNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLA 385
V+ Q AGR+ ++ II G D I KR I G+ ERI L
Sbjct: 360 VSEYKQMAGRAGRPGMDERGEAIIIVGKRD---REIAVKRYIFGEPERITSKLGVETHLR 416
Query: 386 HFIVGLLIEYQKLNVHEPYRMAKETYPYR--NLKWEHYLE-VINVLEDAGIIRREEGI-- 440
+ ++ + + E +T+ ++ + + LE V+ LE+ G++ + +
Sbjct: 417 FHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEDHHLAP 476
Query: 441 LKLGRRAFKYYFDNLS 456
KLG + Y D L+
Sbjct: 477 TKLGSLVSRLYIDPLT 492
>pir||B75073 ATP-dependent RNA helicase homolog PAB1722 - Pyrococcus abyssi
(strain Orsay) >gi|5458399|emb|CAB49887.1| (AJ248286)
SIMILAR TO SEVERAL DNA HELICASES [Pyrococcus abyssi]
Length = 872
Score = 109 bits (270), Expect = 1e-22
Identities = 104/358 (29%), Positives = 176/358 (49%), Gaps = 42/358 (11%)
Query: 2 HILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLP 61
H + K ++E +L Q+EA K + GK+V++ PT SGK+E L + + L+D
Sbjct: 32 HEEVNKLVEELGFKLYSHQVEALKLLYSGKNVVVSTPTASGKSEIFRLFIFDEFLEDSSS 91
Query: 62 PISCLYIAPLKALNRDLLERLKW----WEAKTGIRI--DVRHGDTTQYRRAKQVRNPPHV 115
+Y P +AL + LE+ + + TG ++ + GD R + R P+V
Sbjct: 92 TFLLIY--PTRALINNQLEKFERENEIFSKITGRKVGNSILTGDVELSERRRIRREKPNV 149
Query: 116 LITTPETL-----PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIA 170
+ TTP+ L P L K L KN++ +VVDE+ + G+ + +RL L
Sbjct: 150 IFTTPDMLHYNLLPRWLDYKWL---FKNLKLLVVDEL-HIYRGVFGSNVAYVFRRLFLRL 205
Query: 171 DFIRIG-----LSATVGNEEEVKE---WLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELA 222
+++ LSAT+ N ++ E +E+ + ++ ++F R ++L
Sbjct: 206 RRLKVNPRILALSATLKNPKDFAEKFFGFEFEEVTEAGNPSPKRYIIMFEPTRFSGEQL- 264
Query: 223 ELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKP---VEVHHGSL 279
+R VE +VE + LVF ++R+ E + R+ K + + G+L
Sbjct: 265 --IRQIVE---------RLVENDVKTLVFFDSRKGTERIM-RMFLGSKVFNLITTYKGTL 312
Query: 280 SKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQ-VNRLIQRAGRS 336
+K R E +EGK+KAL+ T+++ELGID+G++DAVI Y P + LIQR GR+
Sbjct: 313 TKLERWRIESDFREGKLKALLTTNALELGIDVGDLDAVINYGIPSDGLFSLIQRFGRA 370
>gb|AAK42601.1| DNA helicase related protein [Sulfolobus solfataricus]
Length = 715
Score = 105 bits (259), Expect = 3e-21
Identities = 120/507 (23%), Positives = 218/507 (42%), Gaps = 94/507 (18%)
Query: 14 RELNRLQIEAFKR-ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLK 72
++LN Q EA K+ + +G +L+ +PTGSGKT A + +++ +LK+G +Y+ PL+
Sbjct: 29 KKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNG---GKAIYVTPLR 85
Query: 73 ALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSL 132
AL + K WE+ G ++ + GD Y ++ITT E L +L +
Sbjct: 86 ALTNEKYLTFKDWES-IGFKVAMTSGD---YDTDDAWLKNYDIIITTYEKLDSLW--RHR 139
Query: 133 RPYLKNVRFVVVDEVTELIDNKRG---AQLILNLKRLSLIADFIRIGLSATVGNEEEVKE 189
+L + V+DE+ L D +RG + + KR +L+A LSAT+ N +++ +
Sbjct: 140 PDWLNEANYFVLDELHYLNDPERGPVVESVTIRAKRRNLLA------LSATISNYKQIAK 193
Query: 190 WLGVDEI------------VKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT 237
WLG + + V P +K+ ++ +LF D ++ D +A L +
Sbjct: 194 WLGAEPVATNWRPVPLMEGVMYPERKKKEYTILF-----RDNTARKVHGDDAIIAYTLDS 248
Query: 238 LWEIVEKHKRVLVFVNTRQFAEVLAHRLKTW----------------------------- 268
L K+ +VLVF N+R+ AE A ++ +
Sbjct: 249 L----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKAISEILKQLDDIEEGGSDEK 304
Query: 269 -------GKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGID-------IGEV 314
K V HH LSK R E ++ K+K ++ T ++ G++ IG++
Sbjct: 305 ELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATPTLAAGVNLPARTVIIGDI 364
Query: 315 ----DAVIQYMSPRQVNRLIQRAGRS-KHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEG 369
++ Y V Q +GR+ + ++ E+ I+ ED + + K+ I
Sbjct: 365 YRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVRDKEDVDR---VFKKYILS 421
Query: 370 KLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYLEVINVLE 429
+E I+ + F++G+L L+ + A E+ +++ ++ I L
Sbjct: 422 DVEPIESKLGSERAFYTFLLGILSAEGSLSEKQLEAFAYESLLAKSVVDVYFDRAIRWLS 481
Query: 430 DAGIIRREEGILKL---GRRAFKYYFD 453
+ IR E L G+R Y +
Sbjct: 482 EHSFIREENNTFTLTNFGKRVADLYIN 508
>pir||H82418 ATP-dependent RNA helicase, DEAD box family VCA0768 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9658191|gb|AAF96666.1| (AE004405) ATP-dependent RNA
helicase, DEAD box family [Vibrio cholerae]
Length = 422
Score = 101 bits (248), Expect = 5e-20
Identities = 89/326 (27%), Positives = 152/326 (46%), Gaps = 23/326 (7%)
Query: 19 LQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKD------GLPPISCLYIAPLK 72
+Q +A + +GK VL A TG+GKT A LP++ ++ I L + P +
Sbjct: 32 IQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQREANSKEIRALVLVPTR 91
Query: 73 ALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSL 132
L + +L+ L+ + T ++I +G T+ + +R +LI TP L VKSL
Sbjct: 92 ELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDILIATPGRLLDHAHVKSL 151
Query: 133 RPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEWLG 192
+L V +V+DE ++D L L+RLS + + SAT ++ + +
Sbjct: 152 --FLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQ--TLFFSATFDSKIKAVAY-- 205
Query: 193 VDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIV--EKHKRVLV 250
I++ P++ + P E + + V+ + L ++ + ++VLV
Sbjct: 206 --RIMRDPIEVQVT-------PSNSTAETVQQMVYPVDKKRKRELLSYLIGSKNWQQVLV 256
Query: 251 FVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGID 310
F TRQ ++ LA LK G +G S+ AR +A K GKV+ALI T G+D
Sbjct: 257 FTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIATDVAARGLD 316
Query: 311 IGEVDAVIQYMSPRQVNRLIQRAGRS 336
I +++ V+ Y P + + R GR+
Sbjct: 317 IAQLEQVVNYDMPFKAEDYVHRIGRT 342
>dbj|BAB05483.1| (AP001513) ATP-dependent RNA helicase [Bacillus halodurans]
Length = 764
Score = 99.8 bits (245), Expect = 1e-19
Identities = 96/360 (26%), Positives = 169/360 (46%), Gaps = 31/360 (8%)
Query: 1 MHILLKKAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDG 59
+ I +++A++++ +L Q A++ +G+ V+ + PT SGKT LPV+ I +D
Sbjct: 43 LDIRIREALEKRGIGQLYTHQNTAYECSEKGEHVVAVTPTASGKTLCYNLPVLQQIRRD- 101
Query: 60 LPPISCLYIAPLKALNRDLLERLKWWEAKTGIRID--VRHGDTTQYRRAKQVRNPPHVLI 117
LY+ P KAL +D L + GI + GDT R + VR HV+I
Sbjct: 102 -ESSRALYLFPTKALAQDQKSELNEIIEEMGISVKCFTYDGDTAPNIR-QAVRKAGHVVI 159
Query: 118 TTPETLPALLTVKSLR--PYLKNVRFVVVDEVTEL--IDNKRGAQLILNLKRLSLI--AD 171
T P+ L + + + + +N+++VV+DE+ + A +I LKR++ ++
Sbjct: 160 TNPDMLHSAILPHHTKWVAFFENLKYVVIDELHTYRGVFGSHVANVIRRLKRIARYYGSE 219
Query: 172 FIRIGLSATVGNEEEVKEWLG------VDEIVKPPLKKRYKFKVLFPRPRPEDKELAELL 225
I SAT+ N +E+ L +D P KK + F P E + +
Sbjct: 220 PTFICTSATIANPQELASQLTGHNVRLIDNNGAPSGKKHFVF--YNPPVVNEPLNIRKSA 277
Query: 226 RVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKP------VEVHHGSL 279
V+V A+ + +E + + +VF +R EV+ L+ K V + G
Sbjct: 278 TVEVNRLAK-----KFLENNIQTIVFARSRVRVEVILSHLQELTKKKIGQQAVRGYRGGY 332
Query: 280 SKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHR 339
+ R E ER L+ G + ++ T+++ELG+DIG++ I P + Q++GR+ R
Sbjct: 333 LPKQRREIERGLRNGDIIGVVSTNALELGVDIGQLQVCIMTGYPGSIASAWQQSGRAGRR 392
>dbj|BAA34994.1| (AB017003) DjVLGB [Dugesia japonica]
Length = 781
Score = 97.9 bits (240), Expect = 4e-19
Identities = 81/329 (24%), Positives = 149/329 (44%), Gaps = 22/329 (6%)
Query: 19 LQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSIL----------KDGLPPISCLYI 68
+Q A I E + ++ A TGSGKT A ++P++N ++ K P CL +
Sbjct: 210 IQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP--KCLIL 267
Query: 69 APLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLT 128
AP + L +L + + T +R V +G + + ++V+ H+L+ TP L +
Sbjct: 268 APTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 327
Query: 129 VKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVK 188
+ L+ +++V+DE ++D Q+ ++ ++ + R L + +E++
Sbjct: 328 KNKIS--LEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQ 385
Query: 189 EWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRV-DVEVAARLRTLWEIVEKHKR 247
+ L D + Y F + D E++ + DVE L+ ++ +
Sbjct: 386 K-LAADFLYN------YIFMTVGRVGSTSDSIKQEIIYMTDVEKLNYLKNIFNTTAPNTL 438
Query: 248 VLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMEL 307
+L+FV T++ A+ LA L + G PV HG S+ R A + G+ L+ T+
Sbjct: 439 ILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFRNGQCPILVATAVAAR 498
Query: 308 GIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
G+DI V VI Y P + + R GR+
Sbjct: 499 GLDIPNVKHVINYDLPSDIEEYVHRIGRT 527
>sp|P34668|YO12_CAEEL PUTATIVE ATP-DEPENDENT RNA HELICASE ZK686.2 IN CHROMOSOME III
>gi|630778|pir||S44912 hypothetical protein ZK686.2 -
Caenorhabditis elegans >gi|304349|gb|AAA28223.1|
(L17337) putative [Caenorhabditis elegans]
Length = 696
Score = 97.5 bits (239), Expect = 6e-19
Identities = 94/354 (26%), Positives = 161/354 (44%), Gaps = 39/354 (11%)
Query: 31 KSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLLERLKWWEAKTG 90
+ V I APTGSGKT +LPV+ ++ + + + P++ L +++ K W ++G
Sbjct: 260 RDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQAVILVPVQTLVAQIVDEFKRWNDESG 319
Query: 91 I-RIDVRHGDTTQYRRAKQV-RNPPHVLITTPETLPALLTVKSLRPY-LKNVRFVVVDEV 147
+ ++ G + A+Q+ +PP+V++ TP L LT K P L +RF++VDE
Sbjct: 320 VAKVVSLSGANDFEKEARQLASDPPNVIVATPARLVQHLTSKIPPPIDLSKLRFLIVDEA 379
Query: 148 TELIDNKRGAQLIL------NLKRLSLIADFIR-------IGLSATVGNE-EEVKEWLGV 193
+ R L L ++R++ + D IR I LSAT+ + EE+ W
Sbjct: 380 DRMGKLMREEWLDLVEFLCGGMERVACLKDIIRQRRAPQKIVLSATLSKDVEELHLW--- 436
Query: 194 DEIVKPPLKKRYKFKVL-FPRPRPEDKELAELLRVDVEVAARL---------RTLWEIVE 243
+ KP L V P+ ++ L + ++ RL +++ +
Sbjct: 437 -NLFKPRLFSATAVSVKDITSGIPQVDHVSGRLALPSSISHRLVVTDPKFHPLAVYQQIT 495
Query: 244 KHK--RVLVFVNTRQFAEVLAHRLKTWGK---PVEVHHGSLSKEARIEAERKLKEGKVKA 298
++K R L+FVN + LAH LK K V+ L + R + K + + +
Sbjct: 496 RNKFNRTLIFVNEVSSSNRLAHVLKELCKDQFEVDYFTAQLFGKRRYKMLEKFNKNENRV 555
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATG 352
LIC+ + G D+ +VD VI Y P + RAGR+ + Y+I+ G
Sbjct: 556 LICSDVLARGTDLNKVDCVINYNLPADDKLFVHRAGRTGR---AGQDGYVISVG 606
>dbj|BAA91812.1| (AK001652) unnamed protein product [Homo sapiens]
Length = 491
Score = 95.6 bits (234), Expect = 2e-18
Identities = 98/340 (28%), Positives = 155/340 (44%), Gaps = 19/340 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ + F+ +Q++A + G+ +L APTGSGKT A +P++ + +
Sbjct: 68 LLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF 127
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRR-AKQVRNPPHVLITTPET 122
L I+P + L + L TG RI + H ++ + +L+TTP
Sbjct: 128 RALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNR 187
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELI-DNKRGAQLILNLKRLSLIADFIRIGL-SAT 180
L LL L +V ++VVDE +L D K G + L L+ + +R + SAT
Sbjct: 188 LIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSAT 247
Query: 181 VGNEEEVKEW--LGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTL 238
+ V++W L +D ++ + R E E ELL V E +L +
Sbjct: 248 FAYD--VEQWCKLNLDNVISVSIGAR--------NSAVETVE-QELLFVGSETG-KLLAV 295
Query: 239 WEIVEK--HKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
E+V+K + VLVFV + + A+ L H L G V+V H +++ R + GK+
Sbjct: 296 RELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKI 355
Query: 297 KALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LICT+ + GID V+ VI Y P I R GR+
Sbjct: 356 WVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRT 395
>pir||S01676 ATP-dependent RNA helicase homolog - fruit fly (Drosophila
melanogaster)
Length = 660
Score = 94.4 bits (231), Expect = 5e-18
Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 21/340 (6%)
Query: 3 ILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKD---- 58
I++ K F+ +Q + IS G+ ++ A TGSGKT A +LP+++ +L+D
Sbjct: 255 IIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL 314
Query: 59 --GLPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVL 116
G P + + ++P + L + + + ++ ++I + +G T+ + + + HV+
Sbjct: 315 ELGRPQV--VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVV 372
Query: 117 ITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIG 176
I TP L L V ++ RFVV+DE ++D + + +++ + +
Sbjct: 373 IATPGRL--LDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLM 430
Query: 177 LSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLR 236
SAT EE++ G LK R+ V ++ + + + A R +
Sbjct: 431 FSATF--PEEIQRMAGEF------LKLRF---VAIGIVGGRCSDVKQTIYEVNKYAKRSK 479
Query: 237 TLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
+ + E+ +VFV T++ A+ LA L P HG + R +A R K G +
Sbjct: 480 LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 539
Query: 297 KALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
K LI TS G+DI + VI Y P +++ + R GR+
Sbjct: 540 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRT 579
>pir||A31922 ATP-dependent RNA helicase homolog - fruit fly (Drosophila
melanogaster) >gi|158796|gb|AAA29013.1| (M23560) Mab4611
antigen (vasa) [Drosophila melanogaster]
Length = 648
Score = 94.4 bits (231), Expect = 5e-18
Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 20/340 (5%)
Query: 3 ILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKD---- 58
I++ K ++ +Q + IS G+ ++ A TGSGKT A +LP+++ +L+D
Sbjct: 242 IIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL 301
Query: 59 --GLPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVL 116
G P + C+ ++P + L + + + ++ ++I + +G T+ + + + HV+
Sbjct: 302 ELGRPQV-CI-VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVV 359
Query: 117 ITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIG 176
I TP L L V ++ RFVV+DE ++D + + +++ + +
Sbjct: 360 IATPGRL--LDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLM 417
Query: 177 LSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLR 236
SAT EE++ G K Y F V ++ + + + A R +
Sbjct: 418 FSATF--PEEIQRMAG-------EFLKNYVF-VAIGIVGGACSDVKQTIYEVNKYAKRSK 467
Query: 237 TLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
+ + E+ +VFV T++ A+ LA L P HG + R +A R K G +
Sbjct: 468 LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 527
Query: 297 KALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
K LI TS G+DI + VI Y P +++ + R GR+
Sbjct: 528 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRT 567
>gb|AAF44917.1|AE003406_122 (AE003416) symbol=vas; synonym=BG:DS00929.14; cDNA=method:''sim4'',
score:''1000.0'', desc:''LD06084 LD Drosophila
melanogaster embryo BlueScript Drosophila melanogaster
cDNA clone LD06084 5prime, mRNA sequence:AA246989'';
match=method:''sim4'', score:>
>gi|7298204|gb|AAF53438.1| (AE003646) vas gene product
[Drosophila melanogaster]
Length = 661
Score = 94.4 bits (231), Expect = 5e-18
Identities = 84/340 (24%), Positives = 155/340 (44%), Gaps = 20/340 (5%)
Query: 3 ILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKD---- 58
I++ K ++ +Q + IS G+ ++ A TGSGKT A +LP+++ +L+D
Sbjct: 255 IIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL 314
Query: 59 --GLPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVL 116
G P + + ++P + L + + + ++ ++I + +G T+ + + + HV+
Sbjct: 315 ELGRPQV--VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVV 372
Query: 117 ITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIG 176
I TP L L V ++ RFVV+DE ++D + + +++ + +
Sbjct: 373 IATPGRL--LDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLM 430
Query: 177 LSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLR 236
SAT EE++ G K Y F V ++ + + + A R +
Sbjct: 431 FSATF--PEEIQRMAG-------EFLKNYVF-VAIGIVGGACSDVKQTIYEVNKYAKRSK 480
Query: 237 TLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
+ + E+ +VFV T++ A+ LA L P HG + R +A R K G +
Sbjct: 481 LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSM 540
Query: 297 KALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
K LI TS G+DI + VI Y P +++ + R GR+
Sbjct: 541 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRT 580
>pir||E72775 probable helicase APE0191 - Aeropyrum pernix (strain K1)
>gi|5103582|dbj|BAA79103.1| (AP000058) 702aa long
hypothetical helicase [Aeropyrum pernix]
Length = 702
Score = 94.4 bits (231), Expect = 5e-18
Identities = 112/420 (26%), Positives = 182/420 (42%), Gaps = 79/420 (18%)
Query: 27 ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLLERLKWWE 86
+ +G+++++ APTGSGKT A++ ++NS+ + G Y+ PLK++ +
Sbjct: 7 VEKGENLVVAAPTGSGKTFIALVAIVNSLARAG---GRAFYLVPLKSVAYEKYTSFSIL- 62
Query: 87 AKTGIRIDVRHGDTTQYRRAKQVRNPPH--VLITTPETLPALLTVKSLRPYLKNVRFVVV 144
++ G+++ + GD + PP V+I T E +LL V +NV ++V
Sbjct: 63 SRMGLKLKISVGDFRE--------GPPEAPVVIATYEKFDSLLRVSP--SLARNVSVLIV 112
Query: 145 DEVTELIDNKRGAQLILNLKR-LSLIADFIRIGLSATVGNEEEVKEWLG---VDEIVKPP 200
DE+ + D KRG L + R L+ + +GLSATV N E+ EW+G V+ +P
Sbjct: 113 DEIHSVSDPKRGPILESIVSRMLASAGEAQLVGLSATVPNAGEIAEWIGGKIVESSWRPV 172
Query: 201 LKKRYKFKVLFPRPRPEDKELAELLRV----DVEVAARLRTLWEIVEKHKRVLVFVNTRQ 256
+ Y FK + L E+ RV D+++AA E +E + LVF +R+
Sbjct: 173 PLREYVFKEY--KLYSPTGGLREVPRVYGLYDLDLAA------EAIEDGGQALVFTYSRR 224
Query: 257 FAEVLAHRL---------------------KTWGKP--------------VEVHHGSLSK 281
A LA R + G P + HH L
Sbjct: 225 RAVTLAKRAAKRLGRRLSSREARVYSAEASRAEGAPRSVAEELASLIAAGIAYHHAGLPP 284
Query: 282 EARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQ--------YMSPRQVNRLIQRA 333
R E + G VK + T ++ G+++ VI + P +V Q A
Sbjct: 285 SLRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRVVIDSYYRYEAGFREPIRVAEYKQMA 344
Query: 334 GRS-KHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLL 392
GR+ + L E EA I+A + D + LI I ER++ L L HFI+G++
Sbjct: 345 GRAGRPGLDEFGEAIIVAERL-DRPEDLI--SGYIRAPPERVESRLAGLRGLRHFILGIV 401
>pir||T38420 probable dna helicases - fission yeast (Schizosaccharomyces pombe)
(fragment) >gi|2656007|emb|CAB16187.1| (Z99126)
DEAD/DEAH box helicase [Schizosaccharomyces pombe]
Length = 643
Score = 93.6 bits (229), Expect = 9e-18
Identities = 86/327 (26%), Positives = 156/327 (47%), Gaps = 37/327 (11%)
Query: 20 QIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRD-- 77
Q +A + G V++ T SGK+ +P++ S+L+D + ++ P K+L +D
Sbjct: 316 QADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSLLEDNQS--TAFFVFPTKSLAQDQK 373
Query: 78 --LLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPY 135
L++ L + IR+D GDT R +R+ +++ T P+ L + + R Y
Sbjct: 374 KSLIDILSYMPTLKNIRVDTFDGDTPLESRESIIRSA-NIIFTNPDMLHQTILPNANRWY 432
Query: 136 --LKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIR------IGLSATVGNE-EE 186
KN++ V+DE + + G + L+R+ IA++ + SAT+ + +
Sbjct: 433 YFFKNLKLFVLDEA-HVYNGIFGVHVAFVLRRMRRIAEYFGNSQYRFVSCSATIEDPLQH 491
Query: 187 VKEWLGVDEIV------KPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWE 240
+K+ GVD I P K++ V++ P + K + + + A++L L +
Sbjct: 492 MKKIFGVDNIKLINYTSSPSGSKKF---VMWNPPYVDPKHPDDGKKSAISEASKL--LIK 546
Query: 241 IVEKHKRVLVFVNTRQFAEVLAH----RLKTWGK-----PVEVHHGSLSKEARIEAERKL 291
EK R +VF R+ E L LKT K ++ + + + R + E ++
Sbjct: 547 FAEKRVRTIVFCRVRKTCESLMRLVRQELKTKQKGDLLSKIQSYRAGYTVQERRKIESEM 606
Query: 292 KEGKVKALICTSSMELGIDIGEVDAVI 318
GK+ +I T+++ELGIDIG +DAVI
Sbjct: 607 FNGKLYGIIATNALELGIDIGSLDAVI 633
>pir||F70354 ATP-dependent RNA helicase DeaD - Aquifex aeolicus
>gi|2983229|gb|AAC06826.1| (AE000698) ATP-dependent RNA
helicase DeaD [Aquifex aeolicus]
Length = 293
Score = 92.4 bits (226), Expect = 2e-17
Identities = 85/296 (28%), Positives = 138/296 (45%), Gaps = 20/296 (6%)
Query: 29 EGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLLERLKWWEAK 88
+G+ LI A TG+GKT A LP++NS LK+G L +AP + L + + + +
Sbjct: 8 QGRDCLIQAKTGTGKTAAFGLPILNS-LKEGE---KALILAPTRELALQIRDNFRDFARY 63
Query: 89 TGIRIDVRHGDTTQYRRAKQVRNPP-HVLITTPETLPALLTVKSLRPYLKNVRFVVVDEV 147
+R +G T + K +R V+I TP + L+ +L+ +VR+ V+DEV
Sbjct: 64 LNVRTFAFYGGTKVFGDLKVLRGGKVDVVIGTPGRIKDLIERGALKT--DDVRYFVLDEV 121
Query: 148 TELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKF 207
++D + +L + SAT E V E+ KK
Sbjct: 122 DVMLDMNFKEDIDFIYSQLPEEKQVFFV--SATFPKE--------VRELSHRYTKKPEFI 171
Query: 208 KVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKT 267
KV P+ +E LLRV + ++ L +++ +V+VFVN ++ A+ L +L T
Sbjct: 172 KVESRELEPQIEE--RLLRV-YSIREKIELLEDVLRDFNKVIVFVNRKRDAKFLGEKLST 228
Query: 268 WGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSP 323
G V HG L + R E +K + G + L+ T G+DI EV+AV+ + P
Sbjct: 229 KGFRVGALHGDLPQRRREEILKKFRRGFINVLVATDVASRGLDISEVEAVVNFHLP 284
>prf||1413329A gene vasa [Drosophila melanogaster]
Length = 660
Score = 91.3 bits (223), Expect = 4e-17
Identities = 84/340 (24%), Positives = 155/340 (44%), Gaps = 21/340 (6%)
Query: 3 ILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKD---- 58
I++ K F+ +Q + IS G+ ++ A TGSGKT A +LP+++ +L+D
Sbjct: 255 IIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHEL 314
Query: 59 --GLPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVL 116
G P + + ++P + L + + + ++ ++I + +G T+ + + + HV+
Sbjct: 315 ELGRPQV--VIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVV 372
Query: 117 ITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIG 176
I TP L L V ++ RFVV+DE ++D + + +++ + +
Sbjct: 373 IATPGRL--LDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLM 430
Query: 177 LSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLR 236
SAT EE++ G LK R+ V ++ + + + A R +
Sbjct: 431 FSATF--PEEIQRMAGEF------LKLRF---VAIGIVGGRCSDVKQTIYEVNKYAKRSK 479
Query: 237 TLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
+ + E+ +VFV T++ A+ LA L P G + R +A R K G +
Sbjct: 480 LIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIRGDRLQSQREQALRDFKNGSM 539
Query: 297 KALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
K LI TS G+DI + VI Y P +++ + R GR+
Sbjct: 540 KVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRT 579
>pir||T39188 probable U5 snRNP-specific 200kd protein - fission yeast
(Schizosaccharomyces pombe) >gi|6014422|emb|CAB57421.1|
(AL121764) putative U5 snRNP-specific 200kd protein
[Schizosaccharomyces pombe]
Length = 2176
Score = 91.3 bits (223), Expect = 4e-17
Identities = 105/431 (24%), Positives = 186/431 (42%), Gaps = 85/431 (19%)
Query: 14 RELNRLQIEAFK-RISEGKSVLIIAPTGSGKTEAAILPVMNSILKD-------GLPPISC 65
+ LNR+Q + +++L+ APTG+GKT A+L ++N + K L
Sbjct: 518 QSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKI 577
Query: 66 LYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPA 125
+YIAPLKAL ++++ IR+ GD+ + KQ + +++TTPE
Sbjct: 578 VYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDS---QLTKQQISETQIIVTTPEKWDI 634
Query: 126 LLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRL-----SLIADFIRIGLSAT 180
+ + Y+ VR V++DEV L+ ++RG L + R+ + +GLSAT
Sbjct: 635 ITRKANDLSYVNLVRLVIIDEV-HLLHDERGPVLESIVARIFRHQEETLEQVRLVGLSAT 693
Query: 181 VGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT--- 237
+ N +V +L VD P K + F + RP P +E + + R++T
Sbjct: 694 LPNYTDVASFLHVD-----PKKGLFYFDSTY-RPCPLKQEFIGI--TEKTPFKRMQTTNE 745
Query: 238 -LWEIVEKH---KRVLVFVNTRQFA--------------EVLAHRLKTWGKPVE------ 273
+E V +H +VL+FV++R+ E + H L++ E
Sbjct: 746 ACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRDKALEEETIGHLLRSDAASREILRAEA 805
Query: 274 -----------------VHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDA 316
+HH + +E R +E +G ++ L+ T+++ G+++
Sbjct: 806 DSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWGVNLPAHTV 865
Query: 317 VIQ-------------YMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVE-DYLQSLII 362
+I+ +SP+ V +++ RAGR + E II E Y SL+
Sbjct: 866 IIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFD--TYGEGIIITAHSELQYYLSLMN 923
Query: 363 AKRAIEGKLER 373
+ IE + R
Sbjct: 924 QQLPIESQFMR 934
>gb|AAF58994.1| (AE003834) Dbp45A gene product [Drosophila melanogaster]
Length = 521
Score = 90.9 bits (222), Expect = 6e-17
Identities = 84/346 (24%), Positives = 151/346 (43%), Gaps = 34/346 (9%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
L+K+ K + +Q + I G+ + A TGSGKT A LP++ + ++ P+
Sbjct: 18 LVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEE---PV 74
Query: 64 S--CLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPE 121
S L + P L + E+ G+R+ V G T Q ++++ PH+++ P
Sbjct: 75 SHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTDQMVESQKLMQRPHIVVAMPG 134
Query: 122 TLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLIL----------NLKRLSLIAD 171
L LT + N++++VVDE +++ L + NL + + D
Sbjct: 135 RLADHLTGCDTFSF-DNLKYLVVDEADRMLNGDFDESLSIIERCLPKTRQNLFFSATMKD 193
Query: 172 FIRIGLSATVGNEEEVKEWLGVDEIVK-PPLKKRYKFKVLFPRPRPEDKELAELLRVDVE 230
FI+ + ++ EW ++ L +RY + R D L E LR E
Sbjct: 194 FIKESSIFPIASD--CFEWSQDSDVATVETLDQRYLLCADYDR----DMVLIEALRKYRE 247
Query: 231 VAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERK 290
++ V++F NT+++ ++L+ LK HG + ++ R+ A +
Sbjct: 248 E-----------NENANVMIFTNTKKYCQLLSMTLKNMEIDNVCLHGFMRQKERVAALSR 296
Query: 291 LKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
K +++ LI T G+DI V+ V+ +M PR I R GR+
Sbjct: 297 FKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRT 342
>emb|CAB90153.1| (AL355013) putative atp-dependent RNA helicase [Schizosaccharomyces
pombe]
Length = 465
Score = 90.1 bits (220), Expect = 1e-16
Identities = 91/332 (27%), Positives = 144/332 (42%), Gaps = 29/332 (8%)
Query: 13 FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLK 72
F+ +Q EA + + V+ +A TGSGKT A LPV+ L + P + +AP +
Sbjct: 66 FKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE-LWNNPSPFFAVVLAPTR 124
Query: 73 ALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTP-ETLPALLTVKS 131
L + E+ + G+R V G +A + PHVL+ TP + L K
Sbjct: 125 ELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKG 184
Query: 132 LRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGL-SATVGNEEEVKEW 190
LKN++++++DE L+D G + K L +I R L SAT+ ++ E +
Sbjct: 185 FS--LKNLKYLIMDEADRLLDMDFGPIID---KILKIIPHERRTLLFSATMTSKVEKLQR 239
Query: 191 LGVDEIVKPPLKKRYKF------KVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEK 244
+ + V+ + ++ + LF + +D L L+ E+A
Sbjct: 240 ASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLVN---ELAG----------- 285
Query: 245 HKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSS 304
+++F T + LA L+T G HG LS+ R+ A K K G L+ T
Sbjct: 286 -NSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDV 344
Query: 305 MELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
G+DI VD VI Y P I R GR+
Sbjct: 345 AARGLDIPLVDVVINYDIPTDSKAYIHRVGRT 376
>gi|6321020 putative ATP-dependent RNA helicase; Brr2p [Saccharomyces
cerevisiae] >gi|731380|sp|P32639|BRR2_YEAST PRE-MRNA
SPLICING HELICASE BRR2 >gi|1077724|pir||S50675 pre-mRNA
splicing helicase BRR2 - yeast (Saccharomyces
cerevisiae) >gi|603413|gb|AAB64699.1| (U18922) Brr2p:
Putative ATP-dependent RNA helicase [Saccharomyces
cerevisiae] >gi|1699380|gb|AAB37500.1|
Rss1p=ATP-dependent RNA helicase homolog [Saccharomyces
cerevisiae, Peptide Mutant, 2163 aa]
Length = 2163
Score = 90.1 bits (220), Expect = 1e-16
Identities = 100/393 (25%), Positives = 175/393 (44%), Gaps = 81/393 (20%)
Query: 16 LNRLQIEAFKRISEGKS-VLIIAPTGSGKTEAAILPVMNSI--------LKDGLPPISCL 66
LN +Q + F EG S +LI APTGSGKT A+L V+ ++ K L +
Sbjct: 499 LNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIV 558
Query: 67 YIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPAL 126
YIAPLKAL ++ + + A GI++ GD+ R +++ + VL++TPE
Sbjct: 559 YIAPLKALVQEQVREFQRRLAFLGIKVAELTGDS---RLSRKQIDETQVLVSTPEKWDIT 615
Query: 127 LTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIR-----IGLSATV 181
+ ++ VR +++DE+ L+ + RG L + R + + + IGLSAT+
Sbjct: 616 TRNSNNLAIVELVRLLIIDEI-HLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATL 674
Query: 182 GNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPED------KELAELLRVDVEVAARL 235
N E+V +L V P + + F F RP P KE L ++ A
Sbjct: 675 PNYEDVGRFLRV------PKEGLFYFDSSF-RPCPLSQQFCGIKERNSLKKLKAMNDACY 727
Query: 236 RTLWEIVEKHKRVLVFVNTR------------QFAEV-LAHRL----------------- 265
+ E + + +++VFV++R +FAE + H+L
Sbjct: 728 EKVLESINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAAN 787
Query: 266 -------KTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVI 318
K + HH L++ R +E +G ++ L+CT+++ G+++ +I
Sbjct: 788 VLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVII 847
Query: 319 -------------QYMSPRQVNRLIQRAGRSKH 338
+ +SP+ V +++ RAGR ++
Sbjct: 848 KGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRY 880
>pir||H64474 hypothetical protein MJ1401 - Methanococcus jannaschii
>gi|1592049|gb|AAB99409.1| (U67580) putative ATP
dependent RNA helicase [Methanococcus jannaschii]
Length = 808
Score = 89.7 bits (219), Expect = 1e-16
Identities = 92/364 (25%), Positives = 176/364 (48%), Gaps = 42/364 (11%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKR-ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP 62
LK+ IK + EL +Q + K + G +LII+ T SGKT L + +++K G
Sbjct: 200 LKEIIKSRGIEELLPVQTLSVKAGLLNGDDLLIISATSSGKTLIGELAGIKNLIKTGK-- 257
Query: 63 ISCLYIAPLKAL-NRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAK-QVRNPPHVLITTP 120
L++ PL AL N+ LE + +E K G ++ +R G ++ + +++ T
Sbjct: 258 -KFLFLVPLVALANQKYLEFKERYE-KLGFKVSLRVGLGRIGKKVDVETSLDADIIVGTY 315
Query: 121 ETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLS-LIADFIRIGLSA 179
E + L+ K L K++ VV+DE+ L +RGA+L + RL L + +I LSA
Sbjct: 316 EGIDYLIRTKRL----KDIGTVVIDEIHSLNLEERGARLDGLIGRLRFLFKEAQKIYLSA 371
Query: 180 TVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELA----ELLRVDVEVAARL 235
T+GN +E+ + L K + RP P ++ + + ++++ + +
Sbjct: 372 TIGNPKELAKQLNA------------KLVLYNGRPVPLERHIIFCKNDFAKLNI-IKEIV 418
Query: 236 RTLWEIVEK---HKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLK 292
+ W+ + K + L+F +R+ AE LA LK+ G E +HG + R + E
Sbjct: 419 KREWQNISKFGYRGQCLIFTYSRKRAEYLAKALKSKGIKAEFYHGGMEYIKRRKVEDDFA 478
Query: 293 EGKVKALICTSSMELGIDIGEVDAVIQ-------YMSPRQVNRLIQRAGRSKHRLLEVSE 345
K++ ++ T+++ G+D +++ +++P + ++ RAGR + E+ +
Sbjct: 479 NQKIQCVVTTAALSAGVDFPASTVILESLAMGADWLNPAEFQQMCGRAGRK--GMHEIGK 536
Query: 346 AYII 349
Y++
Sbjct: 537 VYLL 540
>pir||D82203 ATP-dependent RNA helicase RhlE VC1407 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655903|gb|AAF94564.1|
(AE004219) ATP-dependent RNA helicase RhlE [Vibrio
cholerae]
Length = 397
Score = 89.3 bits (218), Expect = 2e-16
Identities = 85/380 (22%), Positives = 172/380 (44%), Gaps = 30/380 (7%)
Query: 3 ILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP 62
+L++ + +++ +Q +A I +G+ ++ A TG+GKT + +LP++ L+ G
Sbjct: 11 VLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK-LRQGQTQ 69
Query: 63 ----ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLIT 118
+ L + P + L + E+++ + TG++ G + + +++ + VL+
Sbjct: 70 RKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLIDGVDVLVA 129
Query: 119 TPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLS 178
TP L L +++ Y + + VV+DE ++D G +N L ++ + S
Sbjct: 130 TPGRLMDLYGQRAV--YFEEIEMVVLDEADRMLD--MGFIESINKIIDCLPSEVQFLLFS 185
Query: 179 ATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTL 238
AT+ + V E+ K ++ ++ + + + L+ VD + + L +
Sbjct: 186 ATLSRK--------VRELAKTAVRDPHEISIAANQASKSNIS-QWLITVDKDTKSALLSH 236
Query: 239 WEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
++ + L+F+ T+ A L +L+ G E H S+ R + K GK+K
Sbjct: 237 LINEQQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKY 296
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQ 358
L+ T GIDI ++ V+ Y P + + R GR+ R V EA I+ +D +
Sbjct: 297 LVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRT-GRAEAVGEA--ISFVSKDNFK 353
Query: 359 SL---------IIAKRAIEG 369
+L +I +R +EG
Sbjct: 354 NLCMIESRLGHLIERRVVEG 373
>gi|9755332 C4 zinc finger DNA-binding protein of low sequence specificity in
vitro; Probable 119 kD DNA/RNA helicase family member;
Hfm1p [Saccharomyces cerevisiae]
Length = 1187
Score = 88.5 bits (216), Expect = 3e-16
Identities = 118/442 (26%), Positives = 186/442 (41%), Gaps = 88/442 (19%)
Query: 12 KFRELNRLQIEAFKRISEG-KSVLIIAPTGSGKT---EAAILPVMNSILKDGLPPISCLY 67
KF E N++Q EAF I E ++ +I +PTGSGKT E AIL ++ D +Y
Sbjct: 135 KFTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILRLIKETNSD-TNNTKIIY 193
Query: 68 IAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTT--QYRRAKQVRNPPHVLITTPETLPA 125
IAP K+L ++ + W+ + + + + DT+ + +AK+ +++ITTPE
Sbjct: 194 IAPTKSLCYEMYKN--WFPSFVNLSVGMLTSDTSFLETEKAKKC----NIIITTPEKWDL 247
Query: 126 LLTVKSLRPYL-KNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIR-IGLSATVGN 183
L S L + V+ V+VDE+ I KRGA L + L R++ + IR + LSATV N
Sbjct: 248 LTRRWSDYSRLFELVKLVLVDEI-HTIKEKRGASLEVILTRMNTMCQNIRFVALSATVPN 306
Query: 184 EEEVKEW-----------LGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVA 232
E++ W L DE + ++ + F K+ A
Sbjct: 307 IEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYSFNCKNDFQKD-----------A 355
Query: 233 ARLRTLWEIVEKH---KRVLVFVNTRQFAEVLAHRL-----------------------K 266
L EI+EKH + VL+F TR A L +
Sbjct: 356 IYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHIFSKSKKRCNHNPSDKILNE 415
Query: 267 TWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEV-----------D 315
+ + HH +S E R E++ G + L TS++ +G+++
Sbjct: 416 CMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVGVNLPAYLVIIKGTKSWNS 475
Query: 316 AVIQYMSPRQVNRLIQRAGR------------SKHRLLEVSEAYIIATGV-EDYLQSLII 362
+ IQ S V ++I RAGR + ++ + E I T V E L +I
Sbjct: 476 SEIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYENLIHGTDVLESSLHLNLI 535
Query: 363 AKRAIEGKLERIKPYENALDVL 384
A E LE + E A++ L
Sbjct: 536 EHLAAETSLETVYSIETAVNWL 557
>gi|6320497 Ydr291wp [Saccharomyces cerevisiae] >gi|2131417|pir||S70120
ATP-dependent RNA helicase homolog YDR291w - yeast
(Saccharomyces cerevisiae) >gi|1230655|gb|AAB64466.1|
(U51031) Ydr291wp [Saccharomyces cerevisiae]
Length = 1077
Score = 88.5 bits (216), Expect = 3e-16
Identities = 96/361 (26%), Positives = 164/361 (44%), Gaps = 64/361 (17%)
Query: 20 QIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLL 79
Q +A + +G++V+I T SGK+ L ++ +LKD P + +YI P KAL +D
Sbjct: 295 QADAINSLHQGENVIITTSTSSGKSLIYQLAAIDLLLKD--PESTFMYIFPTKALAQDQK 352
Query: 80 ERLKWW-----EAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVK--SL 132
K E K + +D GDT RA +R V+ T P+ + + +
Sbjct: 353 RAFKVILSKIPELKNAV-VDTYDGDTEPEERA-YIRKNARVIFTNPDMIHTSILPNHANW 410
Query: 133 RPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIR-------IGLSATVGNE- 184
R +L +++ VVVDE+ + G+ + L ++RL + I SAT+ +
Sbjct: 411 RHFLYHLKLVVVDEL-HIYKGLFGSHVALVMRRLLRLCHCFYENSGLQFISCSATLKSPV 469
Query: 185 EEVKEWLGVDEIV-----------------KPPL-----KKRYKFKVLFPRPRPEDKELA 222
+ +K+ G++E+ PP+ +KR F R K L
Sbjct: 470 QHMKDMFGINEVTLIHEDGSPTGAKHLVVWNPPILPQHERKRENFI------RESAKILV 523
Query: 223 ELLRVDVEVAA--RLRTLWEIVEKHKRVLVFVNTRQ--FAEVLAHRLKTWGKPVEVHHGS 278
+L+ +V A +R + E++ K R + R+ EV+++R G
Sbjct: 524 QLILNNVRTIAFCYVRRVCELLMKEVRNIFIETGREDLVTEVMSYR------------GG 571
Query: 279 LSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKH 338
S R + ER++ G +KA+I T+++ELGIDIG +DAV+ P + Q++GR+
Sbjct: 572 YSASDRRKIEREMFHGNLKAVISTNALELGIDIGGLDAVLMCGFPLSMANFHQQSGRAGR 631
Query: 339 R 339
R
Sbjct: 632 R 632
>pir||A82872 ATP-dependent RNA helicase UU582 [imported] - Ureaplasma
urealyticum >gi|6899592|gb|AAF30996.1|AE002157_1
(AE002157) ATP-dependent RNA helicase [Ureaplasma
urealyticum]
Length = 443
Score = 87.8 bits (214), Expect = 5e-16
Identities = 79/336 (23%), Positives = 155/336 (45%), Gaps = 21/336 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
+L I +K E +Q++ I++ ++++ +APTG+GKT A +LP++N++ D +
Sbjct: 11 ILDSLINQKIFEPTPIQLKTMPLIAKRENIIGVAPTGTGKTLAFVLPILNNL--DLSQKL 68
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGI-RIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+ I P + L R + ++ ++ + ++ + G + ++ N +LI TP
Sbjct: 69 QVIIITPTRELARQIFSKIIVFKKHQPLLQVKMLIGGESIDQQINSQLNKSQLLIATPTR 128
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
L +LT + L L +V +V DE L+D L I+D I T
Sbjct: 129 LKQILTRQILD--LHHVNALVFDEADMLMD-------------LGFISDLEFINSQFTNK 173
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRP--EDKELAELLRVDVEVAARLRTLWE 240
+ +++ + E++ LKK +K + E+K++ + + + L + +
Sbjct: 174 DVQKISFSATLHEMLSIQLKKYFKNTKIINISNSIYENKKITHYVIHNHDKWHSLSIIMK 233
Query: 241 IVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
++ + ++F NT++ E + L K V + HGSL + R R +K K + ++
Sbjct: 234 TIKPYL-CIIFANTKKEVEAIYQYLIQQNKNVCILHGSLLQRERKNNYRDIKNNKFQYVV 292
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
+ G+DI V +I + P + I RAGRS
Sbjct: 293 ASDIASRGLDIDGVSHIINWNLPTENEWYIHRAGRS 328
>gi|6321360 ATP-dependent RNA helicase CA3 of the DEAD/DEAH box family; Dbp3p
[Saccharomyces cerevisiae]
>gi|1708151|sp|P20447|DBP3_YEAST PROBABLE ATP-DEPENDENT
RNA HELICASE DBP3 (HELICASE CA3) >gi|320699|pir||S30805
probable RNA helicase CA3 - yeast (Saccharomyces
cerevisiae) >gi|172582|gb|AAA73137.1| (M80437)
[Saccharomyces cerevisiae gene, complete cds.], gene
product >gi|1322595|emb|CAA96783.1| (Z72600) ORF YGL078c
[Saccharomyces cerevisiae]
Length = 523
Score = 87.0 bits (212), Expect = 8e-16
Identities = 91/354 (25%), Positives = 160/354 (44%), Gaps = 22/354 (6%)
Query: 12 KFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP-ISCLYIAP 70
KF + +Q A+ + GK V+ +A TGSGKT A +P ++ ++ D I L I+P
Sbjct: 131 KFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISP 190
Query: 71 LKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVK 130
+ L + + L K G++ +G + + Q++ V++ TP L LL
Sbjct: 191 TRELASQIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEG 249
Query: 131 SLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEW 190
S+ L V ++V+DE +++ K + I N+ R + + + +AT E
Sbjct: 250 SVD--LSQVNYLVLDEADRMLE-KGFEEDIKNIIRETDASKRQTLMFTATWPKE------ 300
Query: 191 LGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKH----- 245
V E+ + K + +K + +++ V V+ + R L E+++K+
Sbjct: 301 --VRELASTFMNNPIKVSIGNTDQLTANKRITQIVEV-VDPRGKERKLLELLKKYHSGPK 357
Query: 246 --KRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTS 303
++VL+F ++ A + LK G V HG LS++ R +A + K GK L+ T
Sbjct: 358 KNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATD 417
Query: 304 SMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYL 357
G+DI V VI P V + R GR+ R + A+ + T E +L
Sbjct: 418 VAARGLDIPNVKTVINLTFPLTVEDYVHRIGRT-GRAGQTGTAHTLFTEQEKHL 470
>gb|AAF48446.1| (AE003498) CG6227 gene product [Drosophila melanogaster]
Length = 1224
Score = 86.6 bits (211), Expect = 1e-15
Identities = 90/365 (24%), Positives = 161/365 (43%), Gaps = 18/365 (4%)
Query: 13 FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSIL-----KDGLPPISCLY 67
F + +Q +A I G+ ++ IA TGSGKT A ILP+ IL +DG I+ +
Sbjct: 530 FEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAII- 588
Query: 68 IAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALL 127
+AP + L + + ++ + G+R +G T + +++ +++ TP + +L
Sbjct: 589 MAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 648
Query: 128 TVKSLR-PYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEE 186
S R L+ V +VV+DE + D Q++ + + D + SAT + E
Sbjct: 649 AANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVR--PDRQTVMFSATFPRQME 706
Query: 187 VKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHK 246
I+K P++ + + + E ++ +L D + +L L I ++
Sbjct: 707 AL----ARRILKKPIEVIVGGRSVVCK---EVEQHVVILNDDAKFF-KLLELLGIYQEAG 758
Query: 247 RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSME 306
++VFV+ ++ A++L L P HG + + R K GKV+ LI TS
Sbjct: 759 SIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAA 818
Query: 307 LGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRA 366
G+D+ ++ V+ Y P + R GR+ R + AY T + II
Sbjct: 819 RGLDVKDLILVVNYDVPNHYEDYVHRCGRT-GRAGKKGSAYTFITPEQSRYAGDIIRAMD 877
Query: 367 IEGKL 371
+ G L
Sbjct: 878 LSGTL 882
>pir||T36671 probable helicase - Streptomyces coelicolor
>gi|4539568|emb|CAB38487.1| (AL035636) putative helicase
[Streptomyces coelicolor A3(2)]
Length = 815
Score = 86.2 bits (210), Expect = 1e-15
Identities = 132/530 (24%), Positives = 222/530 (40%), Gaps = 75/530 (14%)
Query: 29 EGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP----ISCLYIAPLKALNRDLLERLKW 84
+G SV++ T SGK+ A ++PV+++++ P + LY+AP KAL D +K
Sbjct: 104 DGDSVVVATGTASGKSLAYLVPVLSALVDGSEAPNGRGATTLYLAPTKALAADQCRSVKE 163
Query: 85 WEAKTG--IRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLR--PYLKNVR 140
G +R V GDT + + +R ++T P+ L + R +LK ++
Sbjct: 164 LSQPLGTSVRAAVYDGDTP-FEEREWIRQYGTYVLTNPDMLHRGILPSHPRWSSFLKALK 222
Query: 141 FVVVDEVTEL--IDNKRGAQLILNLKRLSLI--ADFIRIGLSATVGNEEEVKEWLGVDEI 196
+VV+DE + AQ++ L+RL A + + SAT L +
Sbjct: 223 YVVIDECHTYRGVFGSHVAQVLRRLRRLCARYGASPVFLLASATAAEPSVAARRLTGLPV 282
Query: 197 VKPPLKKRYKFKVLFPRPRPEDKEL-----AELLRVDVEVAARLRTLWEIVEKHKRVLVF 251
++ + +++F P EL A + R AA L T ++ + R + F
Sbjct: 283 IEVADDASPRGELVFALWEPPLTELEGEKGAPVRRTATAEAADLLT--DLTVQGMRSITF 340
Query: 252 VNTRQFAEVLA----HRL----KTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTS 303
V +R+ AE+++ RL ++ V + G E R ER L G + L T+
Sbjct: 341 VRSRRGAELISVIAQERLAEVDRSLAGRVAAYRGGYLPEERRALERALHSGDLLGLAATN 400
Query: 304 SMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIA 363
++ELG+DI +DAV+ P L Q+AGR A
Sbjct: 401 ALELGLDISGLDAVVIAGYPGTRASLWQQAGR---------------------------A 433
Query: 364 KRAIEGKLERIKPYENALDV-LAHFIVGLL---IEYQKLNVHEPYRMAKE---------- 409
RA +G L + ++ LD L H L +E L+ PY +A
Sbjct: 434 GRAGQGALAVLVARDDPLDTFLVHHPEALFDQPVESTVLDPDNPYVLAPHLCAAAAELPL 493
Query: 410 TYPYRNLKWEHYLEVINVLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVS--YKVV 467
T L E++ LE A ++RR RR +L+ I E +VV
Sbjct: 494 TEEDLKLFGPACEELLPQLEAAKLLRRRTRAWHWTRRE---RAADLTDIRGEGGRPVQVV 550
Query: 468 DIGSGKVIGRLDENFV-MDLEEGMEFIMHGRSWLVLEIDGENLIIKVRES 516
+ G+G+++G +D + EG + GR++LV +D E+ + V ++
Sbjct: 551 EEGTGRLLGTVDAGAAHTTVHEGAVHLHQGRTYLVRSLDLEDSVALVEQA 600
>gb|AAC00620.1| (AC002291) Similar ATP-dependent RNA Helicase [Arabidopsis
thaliana]
Length = 845
Score = 85.8 bits (209), Expect = 2e-15
Identities = 87/335 (25%), Positives = 148/335 (43%), Gaps = 20/335 (5%)
Query: 8 AIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP--IS 64
AIK+K ++ +Q + I G V+ +A TGSGKT A ++P++ LK +P +
Sbjct: 42 AIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK-LKQHVPQGGVR 100
Query: 65 CLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLP 124
L ++P + L L+ K T +R+ + G + + +++ P V+I TP L
Sbjct: 101 ALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLM 160
Query: 125 ALLT-VKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
LL+ V + L+ V +VV DE L QL L +LS + +
Sbjct: 161 HLLSEVDDMT--LRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSAL 218
Query: 184 EEEVKEWLGVDEIVKPPLKKRYK--FKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEI 241
E K L ++V+ ++ + K+ F RPE+K +A L + E
Sbjct: 219 AEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEK-----------YSALLYLVREH 267
Query: 242 VEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALIC 301
+ ++ L+FV+T+ E + K V +G + ++AR + + K LI
Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIV 327
Query: 302 TSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T GIDI +D VI + P + + R GR+
Sbjct: 328 TDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRA 362
>pir||D69772 ATP-dependent RNA helicase homolog ydbR - Bacillus subtilis
>gi|1881268|dbj|BAA19295.1| (AB001488) ATP-DEPENDENT RNA
HELICASE DEAD HOMOLOG. [Bacillus subtilis]
>gi|2632758|emb|CAB12265.1| (Z99106) similar to
ATP-dependent RNA helicase [Bacillus subtilis]
Length = 511
Score = 85.4 bits (208), Expect = 2e-15
Identities = 80/340 (23%), Positives = 151/340 (43%), Gaps = 28/340 (8%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
L+K + F E +Q + K V+ A TG+GKT A +P++ I + P I
Sbjct: 31 LMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEKINPES-PNI 89
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
+ IAP + L + E L ++ +G R+ + ++ P++++ TP L
Sbjct: 90 QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNPNIIVGTPGRL 149
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+ +++R L NV VV+DE E+++ + I D + + + N
Sbjct: 150 LDHINRRTIR--LNNVNTVVMDEADEMLN-------------MGFIDD-----IESILSN 189
Query: 184 EEEVKEWLGVDEIVKPPLKK---RYKFKVLFPRPRPEDKELAELLRVDVEVAARLR--TL 238
+ L + P+K+ R+ + + + ++ ++ + + +EV R + TL
Sbjct: 190 VPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTL 249
Query: 239 WEI--VEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
+ ++ + +VF T++ + LA L G E HG L++ R+ A RK KEG +
Sbjct: 250 TRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAI 309
Query: 297 KALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
+ L+ T G+DI V V + P+ + R GR+
Sbjct: 310 EVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRT 349
>gb|AAF60892.1| (AC024876) contains similarity to SW:RPB1_CRIGR [Caenorhabditis
elegans]
Length = 875
Score = 85.0 bits (207), Expect = 3e-15
Identities = 92/392 (23%), Positives = 156/392 (39%), Gaps = 45/392 (11%)
Query: 2 HILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLP 61
H + K K+ F + +Q + I +GK V+ ++ TGSGKT A ++P++ + +
Sbjct: 33 HSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPMLQKLKRRDTT 92
Query: 62 PISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPE 121
I L ++P + L + +K TG+R G + + P +L+ TP
Sbjct: 93 GIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHENPDILLATPG 152
Query: 122 TLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRL--------------S 167
L ++ LR L V++VV DE L + QL LKR+
Sbjct: 153 RLLHVIVEMDLR--LSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQTLLFSATLPK 210
Query: 168 LIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELA----- 222
++ DF + GL+ + + L VDE V K ++F RP++K A
Sbjct: 211 MLVDFAKAGLT------DPMLVRLDVDEKVSD------KLSMVFCMCRPDEKLFALLHLC 258
Query: 223 ------ELLRVDVEVAARLRTLWEIVEK------HKRVLVFVNTRQFAEVLAHRLKTWGK 270
+LL ++ + +++K +K+ +VF T + E + L G
Sbjct: 259 RNFCFKKLLETSLKKCKISKKKVPLLKKVRMDRENKQTVVFCATMKHVEYVVGILHRAGI 318
Query: 271 PVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLI 330
+ L AR +K E + L+ T G+DI +D VI P + +
Sbjct: 319 DCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFV 378
Query: 331 QRAGRSKHRLLEVSEAYIIATGVEDYLQSLII 362
R GR + +IA YL L +
Sbjct: 379 HRVGRVARAGRSGTAISLIANDELPYLTDLFM 410
>pir||H70414 conserved hypothetical protein aq_1328 - Aquifex aeolicus
>gi|2983748|gb|AAC07309.1| (AE000734) hypothetical
protein [Aquifex aeolicus]
Length = 764
Score = 84.7 bits (206), Expect = 4e-15
Identities = 113/470 (24%), Positives = 219/470 (46%), Gaps = 86/470 (18%)
Query: 16 LNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALN 75
LN +Q +K EG + L+ APT +GK+ A L + K+G+ ++ AP ++L
Sbjct: 50 LNPIQTLFYKEY-EGGNALVSAPTSAGKSLTAFLFLRG---KEGIK----VFTAPTRSLV 101
Query: 76 RDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPY 135
+ L+ K +++VR G+ + K++++ V++ T E+L L +++ +
Sbjct: 102 YEKASELRELFRK---KVEVRTGEV--FELYKEIKS--EVVVATYESL--ALALRNRASW 152
Query: 136 LKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEWLGVDE 195
++ R VV+DE+ +L+ ++ ++ + L ++ +GLSAT+ E++ +W+ +
Sbjct: 153 IEEARGVVIDEIHQLMGSR--GWILEEIITFLLDGNYEILGLSATLPGAEQLAKWIKAEL 210
Query: 196 IVKP-----PLKKR----YKFK--VLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEK 244
++ PL+++ KF+ P+ +D+++A L L L+ + +
Sbjct: 211 FIESRWRPVPLERKIIPLIKFEEFTKLPKGATQDEKIANKL---------LGALYTLKKP 261
Query: 245 HKRVLVFVNTRQF---AEVLAHRLKTW------------GKPVEV--HHGSLSKEARIEA 287
++V++FV+ + +A+R K + VE+ H+ + KE R E
Sbjct: 262 DEQVILFVHKKSVGWNVLEIANREKIGIMNETTPFEKEEREEVELAFHNADVPKEERDEI 321
Query: 288 ERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMS-----PRQ------VNRLIQRAGRS 336
E+ +EGK+ L+ TS++ G+++ +I S RQ V ++Q GR+
Sbjct: 322 EKAFREGKLPVLVATSTLAYGVNLPADTVIISVRSFYDRERRQRKFFPDVLDILQMEGRA 381
Query: 337 -KHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPY-------ENALDVLAHFI 388
+ + E +YI+ G ++ +AK E E KPY E L VL+ FI
Sbjct: 382 GRLGIKEKGYSYILPYGAKEE----NLAKALSEKLKEEFKPYLREVFLSEEKLKVLSLFI 437
Query: 389 -VGLLIEYQKLNVHEPYRMAKETYPYRNLKWEHYL-EVINVLEDAGIIRR 436
VG L E + + + TY + L + + EV L+D G I +
Sbjct: 438 LVGFLYEGENFR-----KFLERTYSLKELAYSPQIDEVYEWLKDKGYIEK 482
>dbj|BAB05104.1| (AP001511) ATP-dependent RNA helicase [Bacillus halodurans]
Length = 438
Score = 84.3 bits (205), Expect = 6e-15
Identities = 85/332 (25%), Positives = 147/332 (43%), Gaps = 38/332 (11%)
Query: 19 LQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDL 78
+Q I GK V+ + TG+GKT A +LP+++ I + + + AP + L +
Sbjct: 30 IQERLIPAIRNGKDVIGQSQTGTGKTLAFLLPIVDRI-EGEREEVQAVITAPTRELAGQI 88
Query: 79 LERL----KWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRP 134
E L + IR + G T + R +++R P +++ TP + L+ ++L
Sbjct: 89 FEELQALLRHVPHDEEIRAKLIVGGTDRSRTLEKLRVQPQIVVGTPGRISDLVHEQALNV 148
Query: 135 YLKNVRFVVVDEVTELID-------NKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEV 187
Y + +VVDE +++D +K A++ NL+ + SAT+
Sbjct: 149 YTATM--LVVDEADQMLDMGFIEDVDKVAARMAENLQMMVF---------SATI------ 191
Query: 188 KEWLGVDEIVKPPLKKRYKF-KVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHK 246
E +KP LKK + + +P+ L E V + +L E+
Sbjct: 192 ------PEKLKPFLKKYMNEPRHVHVQPKQATANLIEHRIVPLRHRDKLEITTEVASVLN 245
Query: 247 RVL--VFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSS 304
L VF NT++ A+ LA + G VE HG L R + +++K +V+ L+ T
Sbjct: 246 PFLAIVFTNTKEQADELADAMLAAGLNVERLHGGLQPRQRKQVMKRVKNYEVQYLVATDL 305
Query: 305 MELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
GIDI V +I Y P+ ++ + R GR+
Sbjct: 306 AARGIDIKGVSHIINYSLPKDLDFYVHRVGRT 337
>sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG) (RVLG) >gi|1083795|pir||JC2534
RVLG protein - rat >gi|806464|gb|AAB33364.1| (S75275)
vasa-like gene protein, RVLG protein=putative DEAD box
protein [rats, Wistar-Imanishi, testis, Peptide, 713 aa]
[Rattus sp.]
Length = 713
Score = 83.9 bits (204), Expect = 7e-15
Identities = 81/337 (24%), Positives = 150/337 (44%), Gaps = 20/337 (5%)
Query: 10 KEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDG--------LP 61
K + +L +Q + + G+ ++ A TGSGKT A +LP++ +++DG L
Sbjct: 290 KAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQ 349
Query: 62 PISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPE 121
C+ +AP + L + + + T +R V +G T +Q+ ++L TP
Sbjct: 350 EPECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQGCNILCATPG 409
Query: 122 TLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATV 181
L ++ + + LK V+++V+DE ++D G ++ + + + R L +
Sbjct: 410 RLMDIIGKEKIG--LKQVKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLLFSA 467
Query: 182 GNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEI 241
EE++ G LK Y F V + +++ + + + V + R L EI
Sbjct: 468 TFPEEIQRLAGEF------LKSNYLF-VAVGQVGGACRDVQQSI-LQVGPVFKKRKLVEI 519
Query: 242 VEK--HKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKAL 299
+ +R +VFV T++ A+ +A L HG + R +A + GK L
Sbjct: 520 LRNIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVL 579
Query: 300 ICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
+ TS G+DI V VI + P ++ + R GR+
Sbjct: 580 VATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRT 616
>pir||F82295 ATP-dependent RNA helicase SrmB VC0660 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9655098|gb|AAF93826.1|
(AE004152) ATP-dependent RNA helicase SrmB [Vibrio
cholerae]
Length = 423
Score = 83.5 bits (203), Expect = 1e-14
Identities = 85/340 (25%), Positives = 153/340 (45%), Gaps = 22/340 (6%)
Query: 4 LLKKAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSIL---KDG 59
+L +AI+E F ++Q EA + +G+ VL APTG+GKT A ++P + +L +
Sbjct: 13 ILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQYLLDFPRRK 72
Query: 60 LPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITT 119
P L + P + L + E+ + T + I G A + +++ T
Sbjct: 73 AGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILATTQDIVVAT 132
Query: 120 PETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGL-- 177
P L L + + R + + ++++DE ++D G + RLS + + L
Sbjct: 133 PGRL--LEYIDAERFDCRAIEWLILDEADRMLDMGFGP----TVDRLSTECRWRKQTLLF 186
Query: 178 SATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT 237
SAT+ E GV+ LK V PR E K++++ ++ ++
Sbjct: 187 SATL-------EGRGVEGFTADLLKD--PAHVDAEPPRRERKKISQWYHRADDMPHKVEL 237
Query: 238 LWEIV-EKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
L +I+ E+ +R +VF+ TR+ L L+ P G + ++ R A + +EG V
Sbjct: 238 LKKILTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDV 297
Query: 297 KALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
L+ T GID+ ++ VI + PR + + R GR+
Sbjct: 298 NILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRT 337
>pir||T00936 ATP-dependent RNA helicase homolog T24P15.18 - Arabidopsis thaliana
>gi|2673917|gb|AAB88651.1| (AC002561) putative U5 small
nuclear ribonucleoprotein-specific protein [Arabidopsis
thaliana]
Length = 2172
Score = 83.5 bits (203), Expect = 1e-14
Identities = 94/398 (23%), Positives = 178/398 (44%), Gaps = 88/398 (22%)
Query: 14 RELNRLQIEAF-KRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP-------ISC 65
++LNR+Q + + + + ++L+ APTG+GKT A+L +++ + + P
Sbjct: 504 QQLNRVQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILHQLGLNMNPGGTFNHGNYKI 563
Query: 66 LYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPA 125
+Y+AP+KAL ++++ L G+ + GD Q ++++ +++TTPE
Sbjct: 564 VYVAPMKALVAEVVDSLSQRLKDFGVTVKELSGD--QSLTGQEIKET-QIIVTTPEKWDI 620
Query: 126 LLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQL----ILNLKRLSLIADFIR-IGLSAT 180
+ R Y + VR +++DE+ L+D+ RG L L+++ + IR +GLSAT
Sbjct: 621 ITRKSGDRTYTQLVRLLIIDEI-HLLDDNRGPVLESIVARTLRQIESTKEHIRLVGLSAT 679
Query: 181 VGNEEEVKEWLGVD-----------------------EIVKPPLKK-------------- 203
+ N ++V +L VD VK PL++
Sbjct: 680 LPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQYIGINVKKPLRRFQLMNDICYQKVVA 739
Query: 204 -RYKFKVL-FPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVL 261
K +VL F R E + A +R + A TL +++ + +R+ + L
Sbjct: 740 VAGKHQVLIFVHSRKETAKTARAIR---DTAMANDTLSRFLKEDSQ------SREILKCL 790
Query: 262 AHRLKT--------WGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGE 313
A LK +G +HH L++ R E + + G ++ LI T+++ G+++
Sbjct: 791 AGLLKNNDLKELLPYG--FAIHHAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPA 848
Query: 314 VDAVIQ-------------YMSPRQVNRLIQRAGRSKH 338
+I+ +SP V ++I RAGR ++
Sbjct: 849 HTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQY 886
Score = 76.1 bits (184), Expect = 2e-12
Identities = 70/271 (25%), Positives = 130/271 (47%), Gaps = 28/271 (10%)
Query: 7 KAIKEKFRELNRLQIEAFKRI-SEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISC 65
+ + + F+ N +Q + F + + +V++ APTGSGKT A ++ + L+ +
Sbjct: 1343 ETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRV 1402
Query: 66 LYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTT-QYRRAKQVRNPPHVLITTPETLP 124
+YIAPL+A+ + E+ + WE K G + +R + T + ++ ++I+TPE
Sbjct: 1403 VYIAPLEAIAK---EQFRDWEKKFGKGLGLRVVELTGETLLDLKLLEKGQIIISTPEKWD 1459
Query: 125 ALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRL----SLIADFIRI-GLSA 179
AL R Y++ V +VDE+ LI + G L + + R+ S + + IRI LS
Sbjct: 1460 ALSRRWKQRKYIQQVSLFIVDEL-HLIGGQGGQVLEVIVSRMRYISSQVGNKIRIVALST 1518
Query: 180 TVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKEL----AELLRVDVEVAARL 235
++ N +++ EW+G + F P RP E+ ++L + + A
Sbjct: 1519 SLANAKDLGEWIGASSC------GVFNFP---PNVRPVPLEIHIHGVDILSFEARMQAMT 1569
Query: 236 RTLWEIVEKH----KRVLVFVNTRQFAEVLA 262
+ + + +H K +VFV TR+ + A
Sbjct: 1570 KPTYTAIVQHAKNKKPAIVFVPTRKHVRLTA 1600
>pir||E82488 ATP-dependent RNA helicase RhlE VCA0204 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9657596|gb|AAF96116.1| (AE004360) ATP-dependent RNA
helicase RhlE [Vibrio cholerae]
Length = 451
Score = 83.1 bits (202), Expect = 1e-14
Identities = 91/379 (24%), Positives = 161/379 (42%), Gaps = 34/379 (8%)
Query: 7 KAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKD---GLPP 62
KAI+EK + + +Q++A + GK V+ A TG+GKT LP++ + K
Sbjct: 14 KAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQ 73
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+ L + P + L + + + + ++ V G + +++ +L+ TP
Sbjct: 74 VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGADILVATPGR 133
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNK--RGAQLILNL---KRLSLIADFIRIGL 177
L L +++ + +V+DE ++D R IL L KR +L+
Sbjct: 134 LMDLYNQNAVK--FDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLL-------F 184
Query: 178 SATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT 237
SAT E + E+ K + + V P E +V +
Sbjct: 185 SATFSTE--------IRELAKGLVNNPVEISV---SPANSTARTVEQCIYPADVKKKPDM 233
Query: 238 LWEIVEK--HKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGK 295
L ++V++ ++VLVF+ T+ A LA L G HG+ S+ AR A K G+
Sbjct: 234 LVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGE 293
Query: 296 VKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVED 355
V+ L+ T GIDI ++ V+ + P+ + R GR+ R EV +A + + +E
Sbjct: 294 VRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRT-GRAGEVGKAISLVSAIE- 351
Query: 356 YLQSLIIAKRAIEGKLERI 374
L +R + L R+
Sbjct: 352 -APELFAIERLTQALLPRV 369
>pir||T40504 atp-dependent, dead box, rna helicase - fission yeast
(Schizosaccharomyces pombe) >gi|3560140|emb|CAA20727.1|
(AL031534) atp-dependent, dead box, rna helicase
[Schizosaccharomyces pombe]
Length = 648
Score = 82.7 bits (201), Expect = 2e-14
Identities = 78/348 (22%), Positives = 147/348 (41%), Gaps = 15/348 (4%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKD-GLPP 62
+L K F + +Q S G ++ A TGSGKT A +P++ L++
Sbjct: 133 MLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKY 192
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+ L +AP + L + + + + IR+ G ++ + + PHV++ TP
Sbjct: 193 VQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHVVVATPGR 252
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQL--ILNLKRLSLIADFIRIGLSAT 180
L +++ +L K ++ +V+DE L+ +L +L + + SAT
Sbjct: 253 LWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSAT 312
Query: 181 V--GNEEEVKEWL--GVDEIVKPPLKKRYKFKVLFPRPR-----PEDKELAELLRVDVEV 231
G ++ +K+ + + E P++ K F +P+ P+ + +L +E
Sbjct: 313 FDEGLQQRLKKNMKGNITEKYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIEC 372
Query: 232 AARLRTLWE---IVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAE 288
A + L+ I+ + +VF N + + + L P H L ++ R+++
Sbjct: 373 APAEKDLYLYYLIMRYPGKTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSL 432
Query: 289 RKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
K K L+CT GIDI V VI Y P + + R+GR+
Sbjct: 433 EKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRT 480
>pir||T27149 hypothetical protein Y54E2A.6 - Caenorhabditis elegans
>gi|3881104|emb|CAA21682.1| (AL032646) contains
similarity to Pfam domain: PF00270 (DEAD/DEAH box
helicase), Score=243.2, E-value=1.9e-76, N=2~cDNA EST
CEMSC91F comes from this gene~cDNA EST yk36e11.3 comes
from this gene~cDNA EST yk42a9.3 comes from this
gene~cDNA EST yk42a9.5 c>
Length = 1798
Score = 82.3 bits (200), Expect = 2e-14
Identities = 101/352 (28%), Positives = 150/352 (41%), Gaps = 72/352 (20%)
Query: 13 FRELNRLQIEAFKRISE-GKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPL 71
F N +Q + F + + KS LI APTGSGKT A L M +L+D P + +YIAPL
Sbjct: 958 FDYFNPIQAQVFFCLYKTDKSALIGAPTGSGKTLCAEL-AMFRLLQDH-PGMKVVYIAPL 1015
Query: 72 KALNRDLLERLKWWEAK----TGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALL 127
K+L R ER+ W+ K G R+ GD T + +LITTPE +
Sbjct: 1016 KSLVR---ERVDDWKKKFEDGMGYRVVEVSGDVTPDPEELAASS---ILITTPEKWDGIS 1069
Query: 128 TVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIA-------DFIR-IGLSA 179
+ R Y++ V +V+DEV L+ RGA L + RL +I + +R +GLS
Sbjct: 1070 RSWATREYVRRVGLIVLDEV-HLLGVDRGAVLEAIVSRLKMITRRSHVTEEPVRLLGLST 1128
Query: 180 TVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLW 239
+ N +V EWLG+ P + Y F+ P RP + R+ +
Sbjct: 1129 ALANAGDVAEWLGI------PDEACYNFR---PSVRPVPISVHIQGFPGQHYCPRMGLMN 1179
Query: 240 EIVEK-------HKRVLVFVNTRQFAEVLA----------HRLKTWGK------------ 270
+ K K VL+FV++R+ + A H K W
Sbjct: 1180 KPAYKAILTYSPRKPVLIFVSSRRQTRLTALAFVNLLIADHNPKQWLNMDMLELEDLMAA 1239
Query: 271 ------------PVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGID 310
+ +HH LS R E+ E K++ LI T+++ GI+
Sbjct: 1240 IKDENLKLTLPFGIGMHHAGLSAHERAIVEQLFIEKKIQVLIATATLAWGIN 1291
>pir||C64440 DNA repair protein RAD24 homolog (intein-containing) -
Methanococcus jannaschii >gi|1499976|gb|AAB99126.1|
(U67555) putative SKI2-family helicase [Methanococcus
jannaschii]
Length = 1195
Score = 82.3 bits (200), Expect = 2e-14
Identities = 82/257 (31%), Positives = 126/257 (48%), Gaps = 16/257 (6%)
Query: 15 ELNRLQIEAFKR--ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISC--LYIAP 70
EL Q +A +R + + K+ LI PT SGKT + ++N +L P + ++I P
Sbjct: 15 ELRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVP 74
Query: 71 LKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVK 130
LKAL + E K + G+RI + GD + + H++ITT E L +L K
Sbjct: 75 LKALASEKYEEFKSKYERYGLRIALSIGDYDEDEDLSKY----HLIITTAEKLDSLWRHK 130
Query: 131 SLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEW 190
++ +V VVVDE+ + D RG L + L +L I IGLSAT+GN +E+ EW
Sbjct: 131 I--DWINDVSVVVVDEIHLINDETRGGTLEILLTKLKEFNVQI-IGLSATIGNPDELAEW 187
Query: 191 LGVDEIVKPPLKKRYKFKVLFPRPRPE--DKELAELLRVDVEVAARLRTLWEIVEKHKRV 248
L + IV K K ++ E + E+ E+ VD L + + V++
Sbjct: 188 LNAELIVDDWRPVELK-KGIYKNEAIEFINGEIREIKAVDNNDIYNL--VVDCVKEGGCC 244
Query: 249 LVFVNTRQFAEVLAHRL 265
LVF NT++ A A +L
Sbjct: 245 LVFCNTKRNAVNEAKKL 261
>pir||I51235 DEAD box protein - African clawed frog (fragment)
>gi|2896107|gb|AAC03114.1| (AF046043) DEAD box protein
[Xenopus laevis]
Length = 700
Score = 82.3 bits (200), Expect = 2e-14
Identities = 76/343 (22%), Positives = 154/343 (44%), Gaps = 20/343 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDG---- 59
L + + + +L +Q + I G+ ++ A TGSGKT A +LP+++ ++ +G
Sbjct: 285 LRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITAS 344
Query: 60 ----LPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHV 115
L + IAP + L + + + T +R V +G + V ++
Sbjct: 345 QYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNI 404
Query: 116 LITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRI 175
L TP L +++ + + L +R++V+DE ++D ++ + + + R
Sbjct: 405 LCATPGRLLDIVSKEKIG--LSKLRYLVLDEADRMLDMGFAPEIEKLMTKPGMPTKEKRQ 462
Query: 176 GLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARL 235
L + EE++ + LK + F V+ ++A+ + +++ ++
Sbjct: 463 TLMFSATYPEEIRR------LASNYLKSEHLF-VVVGLVGGACSDVAQTV-LEMRENGKM 514
Query: 236 RTLWEIVE--KHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKE 293
L EI++ + +R ++FVNT++ A+ +A L HG + R A +
Sbjct: 515 EKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRT 574
Query: 294 GKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
GK ++CT+ G+DI V VI Y P++V+ + R GR+
Sbjct: 575 GKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRT 617
>dbj|BAB14698.1| (AK023840) unnamed protein product [Homo sapiens]
Length = 774
Score = 81.9 bits (199), Expect = 3e-14
Identities = 101/431 (23%), Positives = 195/431 (44%), Gaps = 83/431 (19%)
Query: 11 EKFRELNRLQIEAFKRISE-GKSVLIIAPTGSGKTEAAILPVMNSILK----DG---LPP 62
E F+ LNR+Q + ++ E +++L+ APTG+GKT A++ ++ I K DG +
Sbjct: 151 EGFKTLNRIQSKLYRAALETAENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDD 210
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+YIAP+++L ++++ A GI + GD ++ +K+ + +++ TPE
Sbjct: 211 FKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGD---HQLSKEEISATQIIVCTPEK 267
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRG----AQLILNLKRLSLIADFIR-IGL 177
+ R Y + VR +++DE+ L+ + RG A + ++ + + + +R IGL
Sbjct: 268 WDIITRKGGERTYTQLVRLIILDEI-HLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL 326
Query: 178 SATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT 237
SAT+ N E+V +L VD P K + F F RP P ++ + + + R +
Sbjct: 327 SATLPNYEDVATFLRVD-----PAKGLFYFDNSF-RPVPLERTYVGI--TEKKAIKRFQI 378
Query: 238 LWEIVEK-------HKRVLVFVNTRQFAEVLAHRLK-------TWG-------------- 269
+ EIV + +VLVFV++R+ A ++ T G
Sbjct: 379 MNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLR 438
Query: 270 ------KPVE----------VHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGE 313
K +E +HH +++ R E + ++ L+ T+++ G+++
Sbjct: 439 TEAEQCKNLELKDLLLYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPA 498
Query: 314 VDAVI---QYMSPRQ----------VNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSL 360
+I Q SP + + +++ RAGR ++ + I + G Y SL
Sbjct: 499 HTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD-TKGEGILITSHGELQYYLSL 557
Query: 361 IIAKRAIEGKL 371
+ + IE ++
Sbjct: 558 LNQQLPIESQM 568
>sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A-7 (EIF-4A-7) (EIF4A-7)
>gi|485949|emb|CAA55738.1| (X79137) NeIF-4A7 [Nicotiana
tabacum]
Length = 413
Score = 81.5 bits (198), Expect = 4e-14
Identities = 80/338 (23%), Positives = 149/338 (43%), Gaps = 23/338 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDYSLVEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + +++ HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + +D L + + V V +L TL +
Sbjct: 225 PEAL-------EITRKFMNKPVRILV-----KRDDVTLEGIKQFYVNVDKEEWKLETLCD 272
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L +++T V HG + + R R+ + G +
Sbjct: 273 LYETLAITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 332
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI Y P Q + R GRS
Sbjct: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>gb|AAB03337.1| (U60194) RNA helicase GLH-2 [Caenorhabditis elegans]
>gi|1405387|gb|AAB03510.1| (U60449) GLH-2
[Caenorhabditis elegans]
Length = 974
Score = 81.5 bits (198), Expect = 4e-14
Identities = 84/331 (25%), Positives = 139/331 (41%), Gaps = 29/331 (8%)
Query: 27 ISEGKSVLIIAPTGSGKTEAAILPVMNSILKD---------GLPPISCLYIAPLKALNRD 77
I +G ++ A TGSGKT A +LP+M ++ + G P C+ + P + L
Sbjct: 586 IHQGHDIMACAQTGSGKTAAFLLPIMARLIDENDLNTAGEGGCYP-RCIILTPTRELTDQ 644
Query: 78 LLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLK 137
+ + + +T + I +G Q+ +++ T + +++ L
Sbjct: 645 IYNEGRKFAYQTMMEIRPVYGGLAVGYNKGQIEKGATIIVGTVGRIKHFCEEGTIK--LD 702
Query: 138 NVRFVVVDEVTELID------------NKRGAQLILNLKRLSLIADFIRIGLSATVGNEE 185
RF V+DE +ID N N + L A F A + +
Sbjct: 703 KCRFFVLDEADRMIDAMGFGTDIDTIVNYESMPKKENRQTLMFSATFPDSVQEAARNHLK 762
Query: 186 EVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKH 245
E L +D+I +F+ R +DK L E+L +D++ + E+ K
Sbjct: 763 EGYIMLAIDKIGAANKCVLQEFEKC-DRSEKKDK-LLEILGIDIDSYTTEKNS-EVYTK- 818
Query: 246 KRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSM 305
+ +VFV+ R A+ LA L + P HG+ + R EA R+ + G LI T+
Sbjct: 819 -KTIVFVSQRAMADTLASILSSAQVPAITIHGAREQRERSEALRQFRNGSKPVLIATAVA 877
Query: 306 ELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
E G+DI VD VI Y P ++ I R GR+
Sbjct: 878 ERGLDIKGVDHVINYDMPDNIDDYIHRIGRT 908
>gb|AAF55204.1| (AE003709) CG5205 gene product [Drosophila melanogaster]
Length = 1809
Score = 81.1 bits (197), Expect = 5e-14
Identities = 88/353 (24%), Positives = 163/353 (45%), Gaps = 55/353 (15%)
Query: 5 LKKAIKE---KFRELNRLQIEAFKRISE-GKSVLIIAPTGSGKTEAAILPVMNSILKDGL 60
LK + E KF N +Q + F + +VL+ APTGSGKT A + + ++ ++
Sbjct: 949 LKNVVYESLYKFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVAEIAIFRALNQN-- 1006
Query: 61 PPISCLYIAPLKALNRDLLERLKWWEAK-----TGIRIDVRHGDTTQYRRAKQVRNPPHV 115
P +YIAPLKAL + ER+ WE + G+++ GD T +A + +
Sbjct: 1007 PKCKVVYIAPLKALVK---ERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIR---ESQL 1060
Query: 116 LITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADF--- 172
++TTPE + R Y+++V +V+DE+ L+ RG + + + R + I+
Sbjct: 1061 IVTTPEKWDGISRSWQTREYVQHVSLIVIDEI-HLLGEDRGPVIEVIVSRTNFISSHTGR 1119
Query: 173 -IRI-GLSATVGNEEEVKEWLGVDEI--------VKP-PLK---KRYKFKVLFPRPRPED 218
IRI GLS + N +++ WLG++++ V+P PL+ + K PR +
Sbjct: 1120 AIRIVGLSTALANAQDLANWLGINKMGLYNFKPSVRPVPLQVHINGFPGKHYCPRMATMN 1179
Query: 219 KELAELLR-------VDVEVAARLRTLWEIVEKHKRVLVFVNTRQF-------AEVLAHR 264
+ + +R V V++R +T ++ V N +QF E++
Sbjct: 1180 RPTFQAIRTYSPCEPTIVFVSSRRQTRLTALDLITFVAGESNPKQFLHIPEDEIELILQN 1239
Query: 265 LKTWGKP------VEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDI 311
++ + +HH L ++ R E K++ L+ T+++ G+++
Sbjct: 1240 IREQNLKFCLAFGIGLHHAGLQEQDRKCVEELFLNRKIQILVATATLAWGVNL 1292
>gb|AAB64289.1| (AF007580) translation initiation factor [Zea mays]
Length = 414
Score = 81.1 bits (197), Expect = 5e-14
Identities = 79/338 (23%), Positives = 150/338 (44%), Gaps = 23/338 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ + F + + +Q +G V+ A +G+GKT ++ L GL
Sbjct: 52 LLRGIYRYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ-LDYGLVEC 110
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + + + HV++ TP +
Sbjct: 111 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILGSGVHVVVGTPGRV 170
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP N++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 171 FDMLRRQSLRP--DNIKMFVLDEADEMLSRGFKDQIY---DIFQLLPAKIQVGVFSATMP 225
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + ++ L + + V V +L TL +
Sbjct: 226 PEAL-------EITRKFMNKPVRILV-----KRDELTLEGIKQFYVNVDKEDWKLDTLCD 273
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L ++++ V HG + + R R+ + G +
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI Y P Q + R GRS
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 371
>gb|AAB67607.1| (U73459) translational initiation factor eIF-4A [Zea mays]
Length = 414
Score = 81.1 bits (197), Expect = 5e-14
Identities = 79/338 (23%), Positives = 149/338 (43%), Gaps = 23/338 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT ++ L GL
Sbjct: 52 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ-LDYGLVEC 110
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + + + HV++ TP +
Sbjct: 111 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRV 170
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP N++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 171 FDMLRRQSLRP--DNIKMFVLDEADEMLSRGFKDQIY---DIFQLLPSKIQVGVFSATMP 225
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + ++ L + + V V +L TL +
Sbjct: 226 PEAL-------EITRKFMNKPVRILV-----KRDELTLEGIKQFYVNVDKEDWKLDTLCD 273
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L ++++ V HG + + R R+ + G +
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI Y P Q + R GRS
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 371
>dbj|BAB14906.1| (AK024391) unnamed protein product [Homo sapiens]
Length = 1811
Score = 80.8 bits (196), Expect = 6e-14
Identities = 101/431 (23%), Positives = 194/431 (44%), Gaps = 83/431 (19%)
Query: 11 EKFRELNRLQIEAFKRISE-GKSVLIIAPTGSGKTEAAILPVMNSILK----DG---LPP 62
E F+ LNR+Q + ++ E +++L+ APTG+GKT A++ ++ I K DG +
Sbjct: 151 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDD 210
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+YIAP+++L ++++ A GI + GD ++ K+ + +++ TPE
Sbjct: 211 FKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEK 267
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRG----AQLILNLKRLSLIADFIR-IGL 177
+ R Y + VR +++DE+ L+ + RG A + ++ + + + +R IGL
Sbjct: 268 WDIITRKGGERTYTQLVRLIILDEI-HLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL 326
Query: 178 SATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT 237
SAT+ N E+V +L VD P K + F F RP P ++ + + + R +
Sbjct: 327 SATLPNYEDVATFLRVD-----PAKGLFYFDNSF-RPVPLEQTYVGI--TEKKAIKRFQI 378
Query: 238 LWEIVEK-------HKRVLVFVNTRQFAEVLAHRLK-------TWG-------------- 269
+ EIV + +VLVFV++R+ A ++ T G
Sbjct: 379 MNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLR 438
Query: 270 ------KPVE----------VHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGE 313
K +E +HH +++ R E + ++ L+ T+++ G+++
Sbjct: 439 TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPA 498
Query: 314 VDAVI---QYMSPRQ----------VNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSL 360
+I Q SP + + +++ RAGR ++ + I + G Y SL
Sbjct: 499 HTVIIKGTQVYSPEKGHWTELGALDILQMLGRAGRPQYD-TKGEGILITSHGELQYYLSL 557
Query: 361 IIAKRAIEGKL 371
+ + IE ++
Sbjct: 558 LNQQLPIESQM 568
>emb|CAA94089.1| (Z70200) U5 snRNP-specific 200kD protein [Homo sapiens]
Length = 1701
Score = 80.8 bits (196), Expect = 6e-14
Identities = 102/431 (23%), Positives = 194/431 (44%), Gaps = 83/431 (19%)
Query: 11 EKFRELNRLQIEAFKRISE-GKSVLIIAPTGSGKTEAAILPVMNSILK----DG---LPP 62
E F+ LNR+Q + ++ E +++L+ APTG+GKT A++ ++ I K DG +
Sbjct: 41 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDD 100
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+YIAP+++L ++++ A GI + GD ++ K+ + +++ TPE
Sbjct: 101 FKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGD---HQLCKEEISATQIIVCTPEK 157
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRG----AQLILNLKRLSLIADFIR-IGL 177
+ R Y + VR +V+DE+ L+ + RG A + ++ + + + +R IGL
Sbjct: 158 WDIITRKGGERTYTQLVRLIVLDEI-HLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGL 216
Query: 178 SATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT 237
SAT+ N E+V +L VD P K + F F RP P ++ + + + R +
Sbjct: 217 SATLPNYEDVATFLRVD-----PAKGLFYFDNSF-RPVPLEQTYVGI--TEKKAIKRFQI 268
Query: 238 LWEIVEK-------HKRVLVFVNTRQFAEVLAHRLK-------TWG-------------- 269
+ EIV + +VLVFV++R+ A ++ T G
Sbjct: 269 MNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLR 328
Query: 270 ------KPVE----------VHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGE 313
K +E +HH +++ R E + ++ L+ T+++ G+++
Sbjct: 329 TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFGDKHIQVLVSTATLAWGVNLPA 388
Query: 314 VDAVI---QYMSPRQ----------VNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSL 360
+I Q SP + + +++ RAGR ++ + I + G Y SL
Sbjct: 389 HTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYD-TKGEGILITSHGELQYYLSL 447
Query: 361 IIAKRAIEGKL 371
+ + IE ++
Sbjct: 448 LNQQLPIESQM 458
>sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (EIF4A)
>gi|603190|gb|AAA82736.1| (U17979) translation
initiation factor eIF-4A [Zea mays]
Length = 410
Score = 80.8 bits (196), Expect = 6e-14
Identities = 78/338 (23%), Positives = 149/338 (44%), Gaps = 23/338 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT ++ L GL
Sbjct: 48 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ-LDYGLVEC 106
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + + + HV++ TP +
Sbjct: 107 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRV 166
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP N++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 167 FDMLRRQSLRP--DNIKMFVLDEADEMLSRGFKDQIY---DIFQLLPSKIQVGVFSATMP 221
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + ++ L + + V + +L TL +
Sbjct: 222 PEAL-------EITRKFMNKPVRILV-----KRDELTLEGIKQFYVNIDKEDWKLDTLCD 269
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L ++++ V HG + + R R+ + G +
Sbjct: 270 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 329
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI Y P Q + R GRS
Sbjct: 330 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 367
>pir||S52019 translation initiation factor eIF-4A.7 - common tobacco
Length = 413
Score = 80.8 bits (196), Expect = 6e-14
Identities = 80/336 (23%), Positives = 150/336 (43%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDYSLVEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + +++ HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 225 PEAL-------EITRKFMNK--PVRILVKRDEVTLEGIKQFYVNVDKE-EWKLETLCDLY 274
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L +++T V HG + + R R+ + G + LI
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI Y P Q + R GRS
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>gb|AAF39890.1| (AC006661) contains similarity to Pfam families PF00270 (DEAD/DEAH
box helicase, score=162.5, E=1.8e-50, N=2) and PF00271
(Helicases conserved C-terminal domain, score=104.4,
E=2.2e-27, N=1) [Caenorhabditis elegans]
Length = 696
Score = 80.8 bits (196), Expect = 6e-14
Identities = 95/414 (22%), Positives = 170/414 (40%), Gaps = 65/414 (15%)
Query: 4 LLKKAIK-EKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP 62
+LK +K KF R K+ +E K A TG+GKT A +P++ + D
Sbjct: 159 ILKFPLKINKFSRKIRFFYRKIKKTTEEKCC---ARTGTGKTLAFAIPILQKLSVDPYG- 214
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
I L + P + L + E+ ++ V G + +A+++ PHV++ TP
Sbjct: 215 IYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERPHVVVATPGR 274
Query: 123 LPALLTVK--SLRPYLKNVRFVVVDEVTELIDNKRGAQL-----ILNLKRLSLIADFIRI 175
L L+ ++ K ++F V+DE +++ + QL ++ KR +L+
Sbjct: 275 LADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQTLL------ 328
Query: 176 GLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLR---VDVEVA 232
LSAT+ N ++ + + +K Y F +D+ + L V VA
Sbjct: 329 -LSATITNN--------INMLHRVSTRKPY----FFEDKGKDDESTVDRLEQKYVVCPVA 375
Query: 233 ARLRTLWEIVEKHKR------VLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIE 286
+ L +V+ + V++F T + + LA+ + G V H + ++ R+
Sbjct: 376 VKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLA 435
Query: 287 AERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKH-------- 338
A + ++ +ICT G+DI VD V+ + P+ I R GRS
Sbjct: 436 ALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSAL 495
Query: 339 --------RLLE---------VSEAYIIATGVEDYLQSLIIAKRAIEGKLERIK 375
LL+ + E + V Y+ +++AK+ E KLE K
Sbjct: 496 SFVTQYDVELLQAVEQVIGKKLDELKVSPKHVTKYVTQVLVAKKEAELKLENQK 549
>gb|AAF53963.1| (AE003669) CG9253 gene product [Drosophila melanogaster]
Length = 507
Score = 80.8 bits (196), Expect = 6e-14
Identities = 82/332 (24%), Positives = 148/332 (43%), Gaps = 27/332 (8%)
Query: 12 KFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPL 71
K++ +++Q EA +GK V+ +A TGSGKT A LP+++++L++ + L + P
Sbjct: 80 KWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFA-LVLTPT 138
Query: 72 KALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKS 131
+ L + E+ + + GI+ V G + Q+ PH++I TP L L ++
Sbjct: 139 RELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHL--EN 196
Query: 132 LRPY-LKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEW 190
++ + LK ++++V+DE +++ +L LK L + SAT+ + + +
Sbjct: 197 MKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLP--RERRTFLFSATMTKKVKKLQR 254
Query: 191 LGVDEIVKPPLKKRYKF------KVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEK 244
+ + VK + +Y+ LF + +D L +L E+A
Sbjct: 255 ASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILN---ELAGN---------- 301
Query: 245 HKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSS 304
++F +T A L+ G HG +S+ R+ A K K LI T
Sbjct: 302 --SFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDV 359
Query: 305 MELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
G+DI VD V+ + P I R GR+
Sbjct: 360 ASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRT 391
>gb|AAA34666.1| (L00683) ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 80.4 bits (195), Expect = 8e-14
Identities = 78/315 (24%), Positives = 144/315 (44%), Gaps = 20/315 (6%)
Query: 30 GKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISC--LYIAPLKALNRDLLERLKWWEA 87
GK ++ A TGSGKT A ++P++ +L S + + P + L + + K
Sbjct: 238 GKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIAR 297
Query: 88 -KTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDE 146
+GI + G ++ + +++ P ++I TP + S + +V +V+DE
Sbjct: 298 FVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIR-NSASFNVDSVEILVMDE 356
Query: 147 VTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYK 206
+++ G Q LN L ++ + SAT+ ++ + +V LKK +
Sbjct: 357 ADRMLEE--GFQDELNEIMGLLPSNRQNLLFSATMNSK--------IKSLVSLSLKKPVR 406
Query: 207 FKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEK-----HKRVLVFVNTRQFAEVL 261
++ P + K E +R+ + L+ ++ K KR++VFV ++ A L
Sbjct: 407 I-MIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRL 465
Query: 262 AHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYM 321
+ G V HGSL++E R+++ K K +V LICT G+DI +++ VI Y
Sbjct: 466 RIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYD 525
Query: 322 SPRQVNRLIQRAGRS 336
P+ + R GR+
Sbjct: 526 MPKSYEIYLHRVGRT 540
>gi|6323021 putative ATP dependent RNA helicase; Drs1p [Saccharomyces
cerevisiae] >gi|1706521|sp|P32892|DRS1_YEAST PROBABLE
ATP-DEPENDENT RNA HELICASE DRS1 >gi|2132405|pir||S64750
probable ATP-dependent RNA helicase DRS1 - yeast
(Saccharomyces cerevisiae) >gi|1360171|emb|CAA97452.1|
(Z73113) ORF YLL008w [Saccharomyces cerevisiae]
>gi|1495215|emb|CAA62783.1| (X91488) L1345/DRS1 protein
[Saccharomyces cerevisiae]
Length = 752
Score = 80.4 bits (195), Expect = 8e-14
Identities = 78/315 (24%), Positives = 144/315 (44%), Gaps = 20/315 (6%)
Query: 30 GKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISC--LYIAPLKALNRDLLERLKWWEA 87
GK ++ A TGSGKT A ++P++ +L S + + P + L + + K
Sbjct: 268 GKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQIAR 327
Query: 88 -KTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDE 146
+GI + G ++ + +++ P ++I TP + S + +V +V+DE
Sbjct: 328 FVSGITFGLAVGGLNLRQQEQMLKSRPDIVIATPGRFIDHIR-NSASFNVDSVEILVMDE 386
Query: 147 VTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYK 206
+++ G Q LN L ++ + SAT+ ++ + +V LKK +
Sbjct: 387 ADRMLEE--GFQDELNEIMGLLPSNRQNLLFSATMNSK--------IKSLVSLSLKKPVR 436
Query: 207 FKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEK-----HKRVLVFVNTRQFAEVL 261
++ P + K E +R+ + L+ ++ K KR++VFV ++ A L
Sbjct: 437 I-MIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRL 495
Query: 262 AHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYM 321
+ G V HGSL++E R+++ K K +V LICT G+DI +++ VI Y
Sbjct: 496 RIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYD 555
Query: 322 SPRQVNRLIQRAGRS 336
P+ + R GR+
Sbjct: 556 MPKSYEIYLHRVGRT 570
>pir||C69813 RNA helicase homolog yfmL - Bacillus subtilis
>gi|2443255|dbj|BAA22326.1| (D86417) YfmL [Bacillus
subtilis] >gi|2633067|emb|CAB12572.1| (Z99108) similar
to RNA helicase [Bacillus subtilis]
Length = 376
Score = 80.4 bits (195), Expect = 8e-14
Identities = 79/332 (23%), Positives = 152/332 (44%), Gaps = 32/332 (9%)
Query: 13 FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLK 72
F++ +Q +A + I +GK V+ +PTG+GKT A LPV+ I + P + +AP +
Sbjct: 24 FQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPEQKHP-QAVILAPSR 82
Query: 73 ALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSL 132
L + + ++ W+A + +R G ++ ++++ PH+++ TP + L+ K L
Sbjct: 83 ELVMQIFQVIQDWKAGSELRAASLIGGANVKKQVEKLKKHPHIIVGTPGRVFELIKAKKL 142
Query: 133 RPYLKNVRFVVVDEVTELI--DNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEE--VK 188
+ + V+ +V+DE +L+ +++ + I+ + + D + SAT+ E E ++
Sbjct: 143 K--MHEVKTIVLDETDQLVLPEHRETMKQIIK----TTLRDRQLLCFSATLKKETEDVLR 196
Query: 189 EWLGVDEIVKPPLKK----RYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEK 244
E E++K K + K + L R + K L +L R++
Sbjct: 197 ELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVKLLQKLSRLE---------------- 240
Query: 245 HKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSS 304
+ LVFV V A +L + V H K R + ++G+ L+ T
Sbjct: 241 GMQALVFVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIATFEDGEFPLLLATDI 300
Query: 305 MELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
G+DI + VI P + + + R+GR+
Sbjct: 301 AARGLDIENLPYVIHADIPDE-DGYVHRSGRT 331
>pir||B75191 probable ATP-dependent RNA helicase PAB2313 - Pyrococcus abyssi
(strain Orsay) >gi|5457486|emb|CAB48977.1| (AJ248283)
ATP-dependent RNA helicase, putative [Pyrococcus abyssi]
Length = 855
Score = 80.4 bits (195), Expect = 8e-14
Identities = 89/348 (25%), Positives = 156/348 (44%), Gaps = 46/348 (13%)
Query: 11 EKFRELNRLQIEAFKR-ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIA 69
E +EL +Q+ A K + EG+++L+++ T SGKT L + L L++
Sbjct: 212 EGIKELLPVQVLAIKSGLLEGENLLVVSATASGKTLIGELAGIPKALNGK----KMLFLV 267
Query: 70 PLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQV----RNPPHVLITTPETLPA 125
PL AL E + +K G+++ +R G + R + V +++ T E +
Sbjct: 268 PLVALANQKYEDFRRRYSKLGLKVAIRVGMSRIKTREEPVVVDTGIDADIIVGTYEGIDY 327
Query: 126 LLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQL---ILNLKRLSLIADFIRIGLSATVG 182
LL + NV +V+DE+ L D +RG +L I L++L A FI GLSAT+G
Sbjct: 328 LLRAGKK---IGNVGTIVIDEIHMLDDEERGPRLDGLIARLRKLYPGAQFI--GLSATIG 382
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIV 242
N EE+ + LG+ K++ RP D E ++ + RL V
Sbjct: 383 NPEELAKALGM--------------KLVLYDERPVDLERHLVIARNESEKWRLIAKLCKV 428
Query: 243 EKHKR--------VLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEG 294
E +R +VF +R+ LA L G + +H L + R E + +
Sbjct: 429 EAMRRSSKGFKGQTIVFTYSRRRCHELASFLTGKGLKAKPYHSGLPYKQRKITEMEFQAQ 488
Query: 295 KVKALICTSSMELGIDIGEVDAVIQ-------YMSPRQVNRLIQRAGR 335
+ ++ T+++ G+D + + ++S R+ ++++ RAGR
Sbjct: 489 MIDVVVTTAALGAGVDFPASQVIFESLAMGNKWLSVREFHQMLGRAGR 536
>gb|AAK42222.1| ATP-dependent RNA helicase [Sulfolobus solfataricus]
Length = 360
Score = 80.0 bits (194), Expect = 1e-13
Identities = 87/338 (25%), Positives = 151/338 (43%), Gaps = 39/338 (11%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
L+KA+ E + + R+Q + GKSV++ A TGSGKT A ++P++
Sbjct: 26 LRKALNEAGYIKPTRVQEVVIPELMNGKSVIVQAKTGSGKTAAYVIPILER-------NS 78
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
+ L ++P + L +L+ +K I + + G + Y +Q + +++ TP L
Sbjct: 79 TALILSPTRELATQILDEIKKLGKYKQIDVSLIIGGMS-YDDQRQSK----IVVGTPGRL 133
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNK--RGAQLILNLKRLSLIADFIRIGLSATV 181
L + + FV+VDE ++D ++ILN + F SAT+
Sbjct: 134 LDLWSKGKID--FSGYDFVIVDEADRMLDMGFIDDIRMILNHCNAKIAGFF-----SATI 186
Query: 182 GNEEEVKEWLGVDEIVKPPLKKRYKF---KVLFPRPRPEDKELAELLRVDVEVAARLRTL 238
DEI+ L K + +++ +P ++ + ++V + ++ L
Sbjct: 187 P-----------DEIMT--LAKEFSKDLREIVLDEYKPVEEVKQKFVKVRNDWNDKVSKL 233
Query: 239 WEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
E + K +LVF TR A L + LK G V + G + + R++ K+GK
Sbjct: 234 LEEINGEK-ILVFARTRDRARKLYYLLKGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNV 292
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
L+ T GIDI +V+ VI + PR V I R GR+
Sbjct: 293 LVATDLASRGIDIIDVNKVINFDIPRDVETYIHRVGRT 330
>sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A-10 (EIF-4A-10) (EIF4A-10)
>gi|1362118|pir||S55898 translation initiation factor
eIF-4A.10 - common tobacco >gi|475213|emb|CAA55642.1|
(X79009) translation initiation factor (eIF-4A)
[Nicotiana tabacum] >gi|475216|emb|CAA55641.1| (X79008)
translation initiation factor (eIF-4A) [Nicotiana
tabacum]
Length = 413
Score = 80.0 bits (194), Expect = 1e-13
Identities = 79/338 (23%), Positives = 149/338 (43%), Gaps = 23/338 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDYSLVEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + +++ HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + +D L + + V V +L TL +
Sbjct: 225 PEAL-------EITRKFMNKPVRILV-----KRDDVTLEGIKQFYVNVDKEEWKLETLCD 272
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L ++++ V HG + + R R+ + G +
Sbjct: 273 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 332
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI Y P Q + R GRS
Sbjct: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A-14 (EIF-4A-14) (EIF4A-14)
>gi|485943|emb|CAA55742.1| (X79141) NeIF-4A14 [Nicotiana
tabacum]
Length = 413
Score = 80.0 bits (194), Expect = 1e-13
Identities = 79/338 (23%), Positives = 149/338 (43%), Gaps = 23/338 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDYSLVEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + +++ HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + +D L + + V V +L TL +
Sbjct: 225 PEAL-------EITRKFMSKPVRILV-----KRDDVTLEGIKQFYVNVDKEEWKLETLCD 272
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L ++++ V HG + + R R+ + G +
Sbjct: 273 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 332
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI Y P Q + R GRS
Sbjct: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>sp|Q09719|YA47_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C31A2.07C
>gi|2130418|pir||S59645 probable atp-dependent rna
helicase - fission yeast (Schizosaccharomyces pombe)
>gi|914885|emb|CAA90465.1| (Z50113) putative
atp-dependent rna helicase [Schizosaccharomyces pombe]
Length = 848
Score = 80.0 bits (194), Expect = 1e-13
Identities = 87/361 (24%), Positives = 146/361 (40%), Gaps = 31/361 (8%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ K+ F+ +Q + + EG+ V+ +A TGSGKT A ++P++ LK L
Sbjct: 80 LLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH-LKSTLANS 138
Query: 64 S--CLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPE 121
+ L ++P + L ++ +K + T +R G + + + P +++ TP
Sbjct: 139 NTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPG 198
Query: 122 TLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLS--- 178
L L L ++ +VV DE L + AQL L L + +
Sbjct: 199 RFLHLKVEMKLE--LSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPR 256
Query: 179 -----ATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA 233
A G ++ V L V+ V L+ + R L +++++ ++
Sbjct: 257 TLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDIIKLPLKDNV 316
Query: 234 RLRTLWEIVEKHKR------------------VLVFVNTRQFAEVLAHRLKTWGKPVEVH 275
R R + + KR LVFV T+ E ++ L G V
Sbjct: 317 RPREIGNVNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKI 376
Query: 276 HGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
+GSL +EAR+ + GK L+ T GIDI + VI Y P Q + R GR
Sbjct: 377 YGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGR 436
Query: 336 S 336
+
Sbjct: 437 T 437
>emb|CAA11679.1| (AJ223948) RNA helicase [Homo sapiens]
Length = 1257
Score = 79.6 bits (193), Expect = 1e-13
Identities = 89/340 (26%), Positives = 154/340 (45%), Gaps = 51/340 (15%)
Query: 13 FRELNRLQIEAFKRISEGKS-VLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPL 71
F N +Q + F + S VL+ APTGSGKT AA L + K P +YIAPL
Sbjct: 388 FSHFNPVQTQIFHTLYHTDSNVLLGAPTGSGKTVAAELAIFRVFNK--YPTSKAVYIAPL 445
Query: 72 KALNRDLLERLKWW----EAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALL 127
KAL R ER+ W E K G ++ GD T ++ + +++TTPE +
Sbjct: 446 KALVR---ERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKAD---LIVTTPEKWDGVS 499
Query: 128 TVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIR-----IGLSATVG 182
R Y++ V +++DE+ L+ +RG L + + R + I+ +GLS +
Sbjct: 500 RSWQNRNYVQQVTILIIDEI-HLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALA 558
Query: 183 NEEEVKEWLGVDEI--------VKP-PLK---KRYKFKVLFPRPRPEDKELAELLR---- 226
N ++ +WL + ++ V+P PL+ + + + PR +K + +R
Sbjct: 559 NARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP 618
Query: 227 ---VDVEVAARLRT--------LWEIVEKHKRVLVFVNTRQFAEVLA----HRLK-TWGK 270
V + V++R +T + E+ + + ++ R+ ++A LK T
Sbjct: 619 AKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDEREMENIIATVRDSNLKLTLAF 678
Query: 271 PVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGID 310
+ +HH L + R E KV+ LI TS++ G++
Sbjct: 679 GIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVN 718
>pir||T39411 RNA helicase - fission yeast (Schizosaccharomyces pombe)
>gi|3080535|emb|CAA18663.1| (AL022600) DEAD box helicase
[Schizosaccharomyces pombe]
Length = 1935
Score = 79.6 bits (193), Expect = 1e-13
Identities = 116/430 (26%), Positives = 193/430 (43%), Gaps = 94/430 (21%)
Query: 1 MHILLKKAIKEKFRELNRLQIEAFK-RISEGKSVLIIAPTGSGKTEAAILPVMNSI---- 55
M IL +K ++ LNR+Q + +++LI APTG+GKT+ A+L ++ +I
Sbjct: 264 MDILCRKTFLS-YQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISNYV 322
Query: 56 ----LKDGLPPI-------SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYR 104
L D P+ +YIAP+KAL +++E++ A G++ GD +
Sbjct: 323 ESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRLAWLGLKTRELTGD---MQ 379
Query: 105 RAKQVRNPPHVLITTPETLPALLTVKSL--RPYLKNVRFVVVDEVTELIDNKRGA---QL 159
K +L+TTPE ++T KS+ + VR V++DEV ++ ++RGA L
Sbjct: 380 LTKTEIAETQILVTTPEKWD-VVTRKSVGDTQLAEKVRLVIIDEV-HMLHDERGAVIESL 437
Query: 160 ILNLKRL-SLIADFIRI-GLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPE 217
+ +RL IRI GLSAT+ N +V ++LGV+ K + F F RP P
Sbjct: 438 VARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNR-----YKGLFYFSSAF-RPCPI 491
Query: 218 D------KELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQ-------------FA 258
+ K +++ +++ A + L I E H +V++FV++R+ F
Sbjct: 492 EQHFIGAKGSPKIVNSNIDEACFDKVLKLIQEGH-QVMIFVHSRKETINSAKKLREQFFH 550
Query: 259 E--------------VLAHRLKTWGKPVE----------VHHGSLSKEARIEAERKLKEG 294
E LA R + K E +H+ + + R ER G
Sbjct: 551 EGEADLLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMG 610
Query: 295 KVKALICTSSMELGIDIGEVDAVI---QYMSPRQ----------VNRLIQRAGRSKHRLL 341
+K L CT+++ G+++ +I Q P++ V ++ RAGR +
Sbjct: 611 ILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESS 670
Query: 342 EVSEAYIIAT 351
V AYII T
Sbjct: 671 AV--AYIITT 678
Score = 77.6 bits (188), Expect = 6e-13
Identities = 89/348 (25%), Positives = 159/348 (45%), Gaps = 50/348 (14%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISE-GKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP 62
+L+ ++F N +Q + F I ++ + APTGSGKT AA L ++ P
Sbjct: 1123 VLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWRAL--HNYPK 1180
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKT----GIRIDVRHGDTTQYRRAKQVRNPPHVLIT 118
+YIAP+KAL + ER+K W + GI + GDT K V N +++IT
Sbjct: 1181 SKVVYIAPMKALVK---ERVKDWGHRLVEPMGISMIELTGDTNP--DVKAVTNA-NIIIT 1234
Query: 119 TPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIR---- 174
TPE + R Y+++V +++DE+ L+ + RG L + + R++ +A
Sbjct: 1235 TPEKWDGITRSWKSRKYVQDVSLIILDEI-HLLGSDRGPVLEMIVSRMNYVASQTNKKVR 1293
Query: 175 -IGLSATVGNEEEVKEWLGVDE-------IVKP-PLK---KRYKFKVLFPRPRPEDKELA 222
+GLS V N ++ WL + + V+P PL+ + + PR +K
Sbjct: 1294 VLGLSTAVANANDLANWLNIRDGLFNFRHSVRPVPLEIYIDGFPGRAYCPRMMSMNKPAF 1353
Query: 223 ELLR-------VDVEVAARLRTLWEI--------VEKHKRVLVFVNTRQF----AEVLAH 263
+ ++ V + V++R +T +E + R ++++ + +EV
Sbjct: 1354 QAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLYMDEEELEMIVSEVEDK 1413
Query: 264 RLK-TWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGID 310
LK + +HH L++ R +E KV+ LI TS++ G++
Sbjct: 1414 SLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVN 1461
>sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669 >gi|2127878|pir||E64383
translation initiation factor eIF-4A homolog -
Methanococcus jannaschii >gi|1591383|gb|AAB98663.1|
(U67514) ATP-dependent RNA helicase, DEAD-family (deaD)
[Methanococcus jannaschii]
Length = 367
Score = 79.2 bits (192), Expect = 2e-13
Identities = 82/357 (22%), Positives = 162/357 (44%), Gaps = 40/357 (11%)
Query: 27 ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLLERLKWWE 86
+++ +++ A TGSGKT + +P++ + ++ I + + P + L + + ++ +
Sbjct: 41 LNDEYNIVAQARTGSGKTASFAIPLIELVNENN--GIEAIILTPTRELAIQVADEIESLK 98
Query: 87 AKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDE 146
++I +G Y + K ++N ++++ TP + + +L LKNV++ ++DE
Sbjct: 99 GNKNLKIAKIYGGKAIYPQIKALKNA-NIVVGTPGRILDHINRGTLN--LKNVKYFILDE 155
Query: 147 VTELIDNK--RGAQLILNL----KRLSLIADFIRIGLSATVGNE--EEVKEWLGVDEIVK 198
E+++ + + ILN KR+ L SAT+ E K+++G +K
Sbjct: 156 ADEMLNMGFIKDVEKILNACNKDKRILLF--------SATMPREILNLAKKYMGDYSFIK 207
Query: 199 PPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFA 258
+ + + + L LL+ K LVF T++
Sbjct: 208 AKINANIEQSYVEVNENERFEALCRLLK----------------NKEFYGLVFCKTKRDT 251
Query: 259 EVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVI 318
+ LA L+ G HG LS+ R + R K+ K++ LI T M GID+ +++ VI
Sbjct: 252 KELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311
Query: 319 QYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIK 375
Y P+ + R GR+ R + +A I E + L +RA++ K++++K
Sbjct: 312 NYHLPQNPESYMHRIGRT-GRAGKKGKAISIINRRE--YKKLRYIERAMKLKIKKLK 365
>pir||S52023 translation initiation factor eIF-4A.14 - common tobacco
Length = 413
Score = 79.2 bits (192), Expect = 2e-13
Identities = 79/336 (23%), Positives = 150/336 (44%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDYSLVEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + +++ HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 225 PEAL-------EITRKFMSK--PVRILVKRDEVTLEGIKQFYVNVDKE-EWKLETLCDLY 274
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L ++++ V HG + + R R+ + G + LI
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI Y P Q + R GRS
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>pir||T22942 hypothetical protein F58G11.2 - Caenorhabditis elegans
>gi|3877945|emb|CAB03153.1| (Z81094) Similarity to
Xenopus ATP-dependent RNA helicase (SW:AN3_XENLA),
contains similarity to Pfam domain: PF00270 (DEAD/DEAH
box helicase), Score=162.7, E-value=5.2e-51, N=1;
PF00271 (Helicases conserved C-terminal domain),
Score=85.1, E-value=4.7e>
Length = 995
Score = 79.2 bits (192), Expect = 2e-13
Identities = 93/372 (25%), Positives = 163/372 (43%), Gaps = 53/372 (14%)
Query: 1 MHILLKKAIKE-KFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILK-- 57
+H + + +K K+ + +Q ++ +G VL A T +GKT A LP+++ IL+
Sbjct: 388 LHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDKILRMD 447
Query: 58 ----------DGLPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAK 107
DG P++ L +AP + L + E L+ + T I + + +G + + R
Sbjct: 448 EETRNKARQDDG--PLA-LILAPTRELAAQIHEALRTYCQNTDIIVLLSYGQSDRARSLN 504
Query: 108 QVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQL------IL 161
++RN +LI T + TVKS L ++RF+V DE L+ + + L I
Sbjct: 505 EIRNGCDILIGTCGRIMDF-TVKS-HISLLHLRFLVFDEADRLLQDMKKDPLGHLGAIIK 562
Query: 162 NLKRLSLIADFIRIGLSATVGNE------EEVKEWLGVDEIVK-----PPLKKRYKFKVL 210
+ + A I SAT E +K G DE++K L KR +
Sbjct: 563 DAGFMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRLSKRVNLEFF 622
Query: 211 FPRPRPE-DKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWG 269
+ E + +L E+L+ +V K + ++FV + + A +L + G
Sbjct: 623 ECKGLAEKNAKLREILKQNVN------------GKTLKTIIFVQKKDQCDACAAKLTSGG 670
Query: 270 KPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSP-----R 324
+ HG S++ R + K +V L+ T + GID+ ++D VI + P +
Sbjct: 671 MLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQ 730
Query: 325 QVNRLIQRAGRS 336
+ I RAGR+
Sbjct: 731 GADTFIHRAGRT 742
>gb|AAD20136.1| (AF091502) autoaggregation-mediating protein [Lactobacillus
reuteri]
Length = 497
Score = 79.2 bits (192), Expect = 2e-13
Identities = 85/340 (25%), Positives = 146/340 (42%), Gaps = 29/340 (8%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
L KAIK + E +Q + + EGK V+ A TG+GKT A LP++ ++ + P I
Sbjct: 12 LLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTEN-PNI 70
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
+ I+P + L E L +R+ V +G R+ K ++ P +L+ TP L
Sbjct: 71 QAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRL 130
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+ +++ L +++ +V+DE E+ LN+ L I I+
Sbjct: 131 RDHINRHTVK--LDHIKTLVLDEADEM----------LNMGFLEDIESIIK--------E 170
Query: 184 EEEVKEWLGVDEIVKPPLKK-RYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEI- 241
+ ++ L + P +K+ +F R + KEL L V AR ++I
Sbjct: 171 TPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIM 230
Query: 242 -----VEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
V+ +VF T++ + L+ L G HG L+++ R + K K ++
Sbjct: 231 TRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNEL 290
Query: 297 KALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
L+ T G+DI V V Y P + + R GR+
Sbjct: 291 DILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRT 330
>sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2) (EIF4A-2)
>gi|100275|pir||S22578 translation initiation factor
eIF-4A - curled-leaved tobacco >gi|19697|emb|CAA43513.1|
(X61205) nicotiana eukaryotic translation initiation
factor 4A [Nicotiana plumbaginifolia]
Length = 413
Score = 78.8 bits (191), Expect = 2e-13
Identities = 79/336 (23%), Positives = 150/336 (44%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDYSLVEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + +++ HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 225 PEAL-------EITRKFMNK--PVRILVKRDELTLEGIKQFYVNVDKE-EWKLETLCDLY 274
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L ++++ V HG + + R R+ + G + LI
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI Y P Q + R GRS
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>gi|11497691 ATP-dependent RNA helicase, putative [Archaeoglobus fulgidus]
>gi|7446071|pir||G69258 ATP-dependent RNA helicase
homolog - Archaeoglobus fulgidus
>gi|2650581|gb|AAB91160.1| (AE001102) ATP-dependent RNA
helicase, putative [Archaeoglobus fulgidus]
Length = 759
Score = 78.8 bits (191), Expect = 2e-13
Identities = 102/343 (29%), Positives = 161/343 (46%), Gaps = 53/343 (15%)
Query: 20 QIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLL 79
Q EA + EGKS++I APTG+GKTEA+++P + L D LPP +Y P + L +
Sbjct: 18 QKEAMDNLLEGKSLIIRAPTGAGKTEASLIPFIYG-LNDYLPP-QLIYSLPTRTLVESIG 75
Query: 80 ERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITT-PETLPALLTVKSLRPYLKN 138
ER + + +R+ + HG ++A +++TT +T A L+V P
Sbjct: 76 ERAIKYASFKKLRVAIHHG-----KKATSSLFEEDIIVTTIDQTAGAYLSVPLSMPKRWG 130
Query: 139 VRFV--------VVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNE--EEVK 188
FV V DEV +D ++G Q + S I +SAT+ + E VK
Sbjct: 131 NIFVGGIASALTVFDEV-HTLDPEKGLQTAAAIAMQSAKLGLPSIIMSATLPDVFIERVK 189
Query: 189 EWL----GVDEIV----KPPLKKRYKFKV-LFPRPRPEDKELAELLRVDVEVAARLRTLW 239
E + G EI+ + +K R KV L RP E+L D T+
Sbjct: 190 ERIEKNGGKVEIMDVKNESEIKSRRNRKVELINRP-------DEMLTAD--------TVL 234
Query: 240 EIVEKHKRVLVFVNTRQFAEVLAHRL-KTWGKPVEVHHGSLSKEARIEAERKL-----KE 293
+ E ++++V VNT + A+ L L K P+ + H ++ R E E+ K
Sbjct: 235 KEAENCRKLVVVVNTVERAQNLYLDLRKKIDYPIFLLHSRYLEKDRAEKEKSFEKVFGKN 294
Query: 294 GKVKAL-ICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
GK + + I T +E+G+DI ++ ++P ++ LIQRAGR
Sbjct: 295 GKGECIFISTQVIEVGMDISS-PIILSEVAP--IDALIQRAGR 334
>pir||A71223 hypothetical protein PH0044 - Pyrococcus horikoshii
>gi|3256429|dbj|BAA29112.1| (AP000001) 855aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 855
Score = 78.4 bits (190), Expect = 3e-13
Identities = 89/367 (24%), Positives = 165/367 (44%), Gaps = 44/367 (11%)
Query: 11 EKFRELNRLQIEAFKR-ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIA 69
E EL +Q+ A K + +G+++L+++ T SGKT L + L+ L++
Sbjct: 212 EGITELLPVQVLAIKNGLLKGENLLVVSATASGKTLIGELAGIPKALEGK----KMLFLV 267
Query: 70 PLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQV----RNPPHVLITTPETLPA 125
PL AL E K +K G+++ +R G + R + V +++ T E +
Sbjct: 268 PLVALANQKYEDFKRRYSKLGLKVAIRVGMSRIKTREEPVVVDTGIDADIIVGTYEGVDY 327
Query: 126 LLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQL---ILNLKRLSLIADFIRIGLSATVG 182
LL + NV VV+DE+ + D +RG +L I L++L A FI GLSATVG
Sbjct: 328 LLRSGKK---IGNVGTVVIDEIHMIDDEERGPRLDGLIARLRKLYPKAQFI--GLSATVG 382
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPED-KELAELLRVDVEVAARLRTLWEI 241
N +E+ LG+ ++ + ++ R E + +A+L + E+
Sbjct: 383 NPQELARSLGMKLVLYDERPVDLERHLIIARNESEKWRIIAKLCKA------------EV 430
Query: 242 VEKHKR-----VLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
+ K + +VF +R+ LA L G + +H L + R E + + +
Sbjct: 431 MRKSSKGFKGQTIVFTYSRKRCHELASFLTGKGLKAKPYHSGLPYKQRKITEMEFQAQMI 490
Query: 297 KALICTSSMELGIDIGEVDAVIQ-------YMSPRQVNRLIQRAGRSKHRLLEVSEAYII 349
++ T+++ G+D + + ++S R+ ++++ RAGR + E + Y+I
Sbjct: 491 DVVVTTAALGAGVDFPASQVIFESLAMGNKWLSVREFHQMLGRAGRPLYH--EKGKVYLI 548
Query: 350 ATGVEDY 356
+ Y
Sbjct: 549 VEPGKKY 555
>gb|AAG20465.1| (AE005119) DNA repair protein; Rad24b [Halobacterium sp. NRC-1]
Length = 783
Score = 78.4 bits (190), Expect = 3e-13
Identities = 98/403 (24%), Positives = 162/403 (39%), Gaps = 60/403 (14%)
Query: 11 EKFRELNRLQIEAFKR-ISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI-----S 64
E EL Q EA +R ++EG +++ PT SGKT A L ++++I + G P +
Sbjct: 20 EGVEELYPPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGT 79
Query: 65 CLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLP 124
LYI PL+AL + + + +E + G+ + V G+ Y R +++ T E +
Sbjct: 80 ALYIVPLRALAGEKAQEFEAFE-RFGLSVGVSTGN---YERDGARLADNDIVVATSEKVD 135
Query: 125 ALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRL-SLIADFIRIGLSATVGN 183
+L V++ ++ ++ VV DEV + D+ RG L + L +L +AD + LSATVGN
Sbjct: 136 SL--VRNGAGWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGN 193
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVE 243
E+ WL + + + V + + D L V + + + +
Sbjct: 194 AGELAAWLDAELVDSDWRPIELRTGVHYGQSLHYDDGTQAELSVG-SGSQTAAVVADTLA 252
Query: 244 KHKRVLVFVNTRQFAEVLAHRL------------------------------------KT 267
LVFVN+R+ AE A RL
Sbjct: 253 DDGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADA 312
Query: 268 WGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGI----------DIGEVDAV 317
HH L++E R E ++ VKA+ T ++ G+ D D
Sbjct: 313 VASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGT 372
Query: 318 IQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSL 360
M P V + Q GR+ L+ ++ D L+ L
Sbjct: 373 AGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEEL 415
>pir||S52020 translation initiation factor eIF-4A.15 - common tobacco
Length = 413
Score = 78.0 bits (189), Expect = 4e-13
Identities = 78/336 (23%), Positives = 150/336 (44%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ + + L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLAYE-LLEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + + + HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVREDQRILSSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 225 PEAL-------EITRKFMNK--PVRILVKRDELTLEGIKQFYVNVDKE-EWKLETLCDLY 274
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L ++++ V HG + + R R+ + G + LI
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI Y P Q + R GRS
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>pir||C69187 conserved hypothetical protein MTH656 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621738|gb|AAB85161.1| (AE000845) ATP-dependent RNA
helicase related protein [Methanobacterium
thermoautotrophicum]
Length = 837
Score = 78.0 bits (189), Expect = 4e-13
Identities = 87/361 (24%), Positives = 156/361 (43%), Gaps = 44/361 (12%)
Query: 6 KKAIKEKFRELNRLQIEAFKR----------ISEGKSVLIIAPTGSGKTEAAILPVMNSI 55
K A+ EKF+ + + + R + EG+ +++++ T SGKT A L +
Sbjct: 204 KLAVPEKFKRMLKREGNTVLRPVQVLAVDAGLLEGEDLMVVSATASGKTLIAEL----AG 259
Query: 56 LKDGLPPISCLYIAPLKALN----RDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRN 111
+ L +Y+ PL AL RD R + KT I++ + ++ R ++R
Sbjct: 260 IPRALGGEKFIYLTPLVALANQKYRDFRRRYSPLKLKTAIKVGM-----SRIRARDELRI 314
Query: 112 PP------HVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKR 165
P +++ T E + +L L +V VV+DE+ L D +RG++L +KR
Sbjct: 315 PETDVSKADIVVGTYEGMDYILRA-GRSGILGDVGVVVIDEIHTLEDEERGSRLKGMIKR 373
Query: 166 LS-LIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL 224
+ L D I LSATV N EV G+ + + ++F R + K L
Sbjct: 374 IRRLFPDAQIIALSATVKNNLEVASEFGLRLVEYDRRPVPLERHLVFSRGEEDKKNLI-- 431
Query: 225 LRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEAR 284
+ +A R + + +VF N+R+ ++A L G +H LS R
Sbjct: 432 ----LRLAEREFSTESEKGFRGQTIVFTNSRRKTRLIADYLTRRGVRAAAYHAGLSYRER 487
Query: 285 IEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQ-------YMSPRQVNRLIQRAGRSK 337
ER ++ A++ T+++ G+D V + ++ P + +++ RAGR
Sbjct: 488 QRIERAFASQELAAIVTTAALAAGVDFPASQVVFETLLMGNRWLMPNEFAQMLGRAGRPS 547
Query: 338 H 338
+
Sbjct: 548 Y 548
>pir||S52018 translation initiation factor eIF-4A.11 - common tobacco
Length = 413
Score = 77.6 bits (188), Expect = 6e-13
Identities = 79/336 (23%), Positives = 148/336 (43%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDYSLVEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + +++ HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP N++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DNIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 225 PEAL-------EITRKFMNK--PVRILVKRDELTLEGIKQFYVNVDKE-EWKLETLCDLY 274
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L +++ V HG + + R R+ + G + LI
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI Y P Q + R G S
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHS 370
>gb|AAG12945.1|AC073944_8 (AC073944) ethylene-responsive RNA helicase, putative [Arabidopsis
thaliana]
Length = 501
Score = 77.6 bits (188), Expect = 6e-13
Identities = 80/344 (23%), Positives = 150/344 (43%), Gaps = 29/344 (8%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVM-----NSILKD 58
+L++ K F E +Q + + +G+ ++ IA TGSGKT + +LP + +L
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 59 GLPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLIT 118
G PI L +AP + L + + + + + I+ +G + + + ++ ++I
Sbjct: 170 GDGPI-VLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIA 228
Query: 119 TPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLS 178
TP L ++ +S L+ V ++V+DE ++D Q+ I IR
Sbjct: 229 TPGRLIDMM--ESNNTNLRRVTYLVLDEADRMLDMGFDPQI-------RKIVSHIRPDRQ 279
Query: 179 ATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA----- 233
+ KE V+++ K L YK + D + +R V+V +
Sbjct: 280 TLYWSATWPKE---VEQLSKKFLYNPYKVII-----GSSDLKANRAIRQIVDVISESQKY 331
Query: 234 -RLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLK 292
+L L E + R+LVF++T++ + + +L+ G P HG S+ R + +
Sbjct: 332 NKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFR 391
Query: 293 EGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
GK + T G+D+ +V VI Y P + + R GR+
Sbjct: 392 SGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRT 435
>sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A-11 (EIF-4A-11) (EIF4A-11)
>gi|485987|emb|CAA55737.1| (X79136) NeIF-4A11 [Nicotiana
tabacum]
Length = 413
Score = 77.3 bits (187), Expect = 7e-13
Identities = 78/336 (23%), Positives = 148/336 (43%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT ++ L L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ-LDYSLVEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + +++ HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP N++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DNIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 225 PEAL-------EITRKFMNK--PVRILVKRDELTLEGIKQFYVNVDKE-EWKLETLCDLY 274
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L +++ V HG + + R R+ + G + LI
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI Y P Q + R G S
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHS 370
>sp|P73421|RECQ_SYNY3 ATP-DEPENDENT DNA HELICASE RECQ >gi|7469265|pir||S77358
ATP-dependent DNA helicase recQ - Synechocystis sp.
(strain PCC 6803) >gi|1652540|dbj|BAA17461.1| (D90906)
ATP-dependent DNA helicase RecQ [Synechocystis sp.]
Length = 478
Score = 77.3 bits (187), Expect = 7e-13
Identities = 89/339 (26%), Positives = 157/339 (46%), Gaps = 31/339 (9%)
Query: 31 KSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLLERLKWWEAKTG 90
+ L++ PTG GK+ LP ++L +GL L ++PL AL D ++ L+ +
Sbjct: 35 RDCLVVLPTGGGKSICFQLP---ALLGEGLT----LVVSPLVALMEDQVQSLR----RQN 83
Query: 91 IRIDVRHGDTTQYRRAKQV-----RNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVD 145
+ H ++ R KQV + +L +PETL + LR ++ +++D
Sbjct: 84 LPAACLHSQLSRPER-KQVLYQLGQQQLKLLYLSPETLLSEPVWNLLRQPQVKLQGIMLD 142
Query: 146 EVTELI---DNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLK 202
E L+ D+ R A L R L D +I L+A + ++ L V+ + L+
Sbjct: 143 EAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIPLAAFTATADRQQQNLIVEGL---NLR 199
Query: 203 KRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRV--LVFVNTRQFAEV 260
F+V RP+ K +++ + R + L + KH + L++V TR A
Sbjct: 200 SPECFQVSPHRPQLHLK-----VKMVLSEYCRRQQLRRFLLKHLQESGLIYVRTRTMAIN 254
Query: 261 LAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQY 320
LA L+ G E +HG L R + E+K G++ +++CT++ LGID + V+ Y
Sbjct: 255 LAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVCTNAFGLGIDKPDTRWVLHY 314
Query: 321 MSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQS 359
+P + +Q GR+ R L+ +E + + +L S
Sbjct: 315 QAPLMLMDYLQEVGRA-GRDLQPAECLTLVSEPTGWLDS 352
>emb|CAC11964.1| (AL445065) DNA helicase related protein [Thermoplasma acidophilum]
Length = 674
Score = 77.3 bits (187), Expect = 7e-13
Identities = 88/389 (22%), Positives = 164/389 (41%), Gaps = 80/389 (20%)
Query: 23 AFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLLERL 82
A ++I +G++V++ PT +GKT A + + ++ + +YI PL++L + L
Sbjct: 30 AIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRN----LKSIYIVPLRSLAMEKFSEL 85
Query: 83 KWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKN-VRF 141
G+++ + GD Y + +I T E +LL PY+ N V
Sbjct: 86 SRLR-DLGLKVKMSIGD---YDDSPDFIKRYDAVILTSEKADSLLHHD---PYILNDVGL 138
Query: 142 VVVDEVTELIDNKRGAQLILNLKRLSLIADFIR-----IGLSATVGNEEEVKEWLGVDEI 196
+V+DE+ + D RG L+ ++ IA ++ + LSATV N E+ WL I
Sbjct: 139 LVLDEIHTIGDESRGP----TLETVASIARYVNPDVRILALSATVSNAMELASWLDASLI 194
Query: 197 VKP----PLKKR--YKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLV 250
PLK Y+ ++ R + +++R E VE + +VL+
Sbjct: 195 KSDFRPVPLKTGILYRDQLYLDGKRRSGVSINQIIR-------------ETVEDNGQVLM 241
Query: 251 FVNTRQFAEVLAHRL-------------------------KTWGKPVEVHHGSLSKEARI 285
FV++R+ AE A L + + V HH LS + R
Sbjct: 242 FVSSRKKAEDTARDLAQIFGSDANIKISSDETNVYDDMLNEILPRGVAFHHAGLSNDQRA 301
Query: 286 EAERKLKEGKVKALICTSSMELGIDIGEVDAV-----------IQYMSPRQVNRLIQRAG 334
ER+ + ++K ++ T ++ G+++ + I Y++ ++ ++I RAG
Sbjct: 302 FIEREFRARRIKVIVATPTLAAGVNLPARLVIVRDITRWGSDGISYLTNMEIKQMIGRAG 361
Query: 335 RSKHRLLEVSEAYIIA----TGVEDYLQS 359
R + + Y+ + +DYL +
Sbjct: 362 RPGYDQYGIGLIYVSSQSSYEAAKDYLST 390
>gi|6320041 (putative) DEAD box RNA helicase; Dhh1p [Saccharomyces cerevisiae]
>gi|729329|sp|P39517|DHH1_YEAST PUTATIVE ATP-DEPENDENT
RNA HELICASE DHH1 >gi|320822|pir||S31229 probable RNA
helicase (EC 3.6.1.-) DHH1 - yeast (Saccharomyces
cerevisiae) >gi|4353|emb|CAA46853.1| (X66057)
RNA-helicase of the DEAD-BOX family [Saccharomyces
cerevisiae] >gi|1061279|emb|CAA91586.1| (Z67750)
putative RNA helicase [Saccharomyces cerevisiae]
>gi|1431254|emb|CAA98734.1| (Z74208) ORF YDL160c
[Saccharomyces cerevisiae]
Length = 506
Score = 76.9 bits (186), Expect = 9e-13
Identities = 79/338 (23%), Positives = 143/338 (41%), Gaps = 25/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL + F + + +Q EA G+ +L A G+GKT A ++P + + K L I
Sbjct: 57 LLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKV-KPKLNKI 115
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L + P + L + ++ GI V G T ++ H+L+ TP +
Sbjct: 116 QALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRV 175
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
L + K L + ++DE +++ R + I+ L + SAT
Sbjct: 176 LDLASRKVAD--LSDCSLFIMDEADKMLS--RDFKTIIEQILSFLPPTHQSLLFSATFP- 230
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAAR-----LRTL 238
L V E + L K Y+ ++ E+ L + + V R L TL
Sbjct: 231 -------LTVKEFMVKHLHKPYEINLM------EELTLKGITQYYAFVEERQKLHCLNTL 277
Query: 239 WEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ ++ ++ + +F N+ E+LA ++ G H + ++ R + + ++GKV+
Sbjct: 278 FSKLQINQAI-IFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRT 336
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
L+C+ + GIDI V+ VI + P+ + R GRS
Sbjct: 337 LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRS 374
>sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (EIF4A)
>gi|478306|pir||JN0839 translation initiation factor
eIF-4A - wheat
Length = 414
Score = 76.9 bits (186), Expect = 9e-13
Identities = 78/338 (23%), Positives = 147/338 (43%), Gaps = 23/338 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT ++ L GL
Sbjct: 52 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ-LDYGLVEC 110
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + + + HV++ TP +
Sbjct: 111 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRV 170
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
++ +SLRP N++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 171 FDIVRRQSLRP--DNIKMFVLDEADEMLSRGFKDQIY---DIFQLLPGKIQVGVFSATMP 225
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + ++ L + + V V +L TL +
Sbjct: 226 PEAL-------EITRKFMNKPVRILV-----KRDELTLEGIKQFYVNVEKEEWKLDTLCD 273
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L +++ V HG + + R R+ + G +
Sbjct: 274 LYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 333
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI Y P Q R GRS
Sbjct: 334 LITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRS 371
>pir||S52017 translation initiation factor eIF-4A.9 - common tobacco
Length = 413
Score = 76.9 bits (186), Expect = 9e-13
Identities = 78/336 (23%), Positives = 150/336 (44%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ + + L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYE-LLEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + + + HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 225 PEAL-------EITRKFMNK--PVRILVKRDELTLEGIKQFYVNVDKE-EWKLETLCDLY 274
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L ++++ V HG + + R R+ + G + LI
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI Y P Q + R GRS
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A-9 (EIF-4A-9) (EIF4A-9)
>gi|485951|emb|CAA55736.1| (X79135) NeIF-4A9 [Nicotiana
tabacum]
Length = 413
Score = 76.5 bits (185), Expect = 1e-12
Identities = 77/336 (22%), Positives = 150/336 (43%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT ++ + + L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYE-LLDC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + + + HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 225 PEAL-------EITRKFMNK--PVRILVKRDELTLEGIKQFYVNVDKE-EWKLETLCDLY 274
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L ++++ V HG + + R R+ + G + LI
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI Y P Q + R GRS
Sbjct: 335 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>pir||S53814 DEAD box protein - slime mold (Dictyostelium discoideum)
(fragment) >gi|550329|emb|CAA57417.1| (X81823) putative
RNA helicase [Dictyostelium discoideum]
Length = 582
Score = 76.5 bits (185), Expect = 1e-12
Identities = 91/370 (24%), Positives = 155/370 (41%), Gaps = 25/370 (6%)
Query: 1 MHILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGL 60
+H+LLKK EK +Q + I G+ ++ IA TGSGKT A +LP+ IL
Sbjct: 33 VHLLLKKFQYEK---PTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPK 89
Query: 61 PP----ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVL 116
+ L ++P + L + K + G+R +G + + +++ ++
Sbjct: 90 SAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGADIV 149
Query: 117 ITTPETLPALLTVKSLR-PYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRI 175
+ TP + +L + R L+ V F+V+DE + D G Q +N S+ D I
Sbjct: 150 VCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQ--INCIVDSIRPDRQTI 207
Query: 176 GLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARL 235
SAT + V+ + K L K +++ ++ + + V R
Sbjct: 208 MFSATFPPK--------VENVAKKILNK--PLEIIAGGRSIVSSDIEQFVEVR-PTETRF 256
Query: 236 RTLWEIVE--KHK-RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLK 292
R L E++ HK ++L+F N ++ + L +L HGS + R E K
Sbjct: 257 RRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFK 316
Query: 293 EGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATG 352
LI T G+DI +++ V+ + P + + R GR+ R AY T
Sbjct: 317 NKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRT-GRAGNRGTAYTFITP 375
Query: 353 VEDYLQSLII 362
E+ S II
Sbjct: 376 DEERFSSSII 385
>sp|O01836|GLH3_CAEEL ATP-DEPENDENT RNA HELICASE GLH-3 (GERMLINE HELICASE-3)
>gi|7446042|pir||T15231 germline RNA helicase-3 -
Caenorhabditis elegans >gi|2088766|gb|AAB57719.1|
(AF003145) Contains similarity to Pfam domain: PF00098
(zf-CCHC), Score=24.0, E-value=0.00099, N=2
[Caenorhabditis elegans] >gi|3386542|gb|AAC28388.1|
(AF079509) germline RNA helicase-3 [Caenorhabditis
elegans]
Length = 720
Score = 76.5 bits (185), Expect = 1e-12
Identities = 80/331 (24%), Positives = 146/331 (43%), Gaps = 29/331 (8%)
Query: 27 ISEGKSVLIIAPTGSGKTEAAILPVMNSIL---------KDGLPPISCLYIAPLKALNRD 77
+++GK +L A TGSGKT A +LP+M+ ++ + G P C+ + P + L
Sbjct: 332 VADGKDILACAQTGSGKTAAFLLPIMSRLILEKDLNYGAEGGCYP-RCIILTPTRELADQ 390
Query: 78 LLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLK 137
+ + + ++ + I +G Q+ +++ T + +++ L
Sbjct: 391 IYNEGRKFSYQSVMEIKPVYGGINVGYNKSQIMKGCTIIVGTIGRVKHFCEDGAIK--LD 448
Query: 138 NVRFVVVDEVTELIDNKR-GAQL--ILNLKRLSLIADFIRIGLSATVGNE---------E 185
R++V+DE +ID+ G ++ I+N K + + SAT +
Sbjct: 449 KCRYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFSATFPSSVQEAARKLLR 508
Query: 186 EVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKH 245
E + +D+I +F+ L R DK L +LL +D++ + V
Sbjct: 509 EDYTMITIDKIGAANKCVIQEFE-LCDRTSKVDK-LLKLLGIDIDTYTTEKNSDVFV--- 563
Query: 246 KRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSM 305
K+ +VFV ++ A+ LA + P HG+ ++ R A + + G LI T+ +
Sbjct: 564 KKTIVFVAQQKMADTLASIMSAAQVPAITIHGAREQKERSAALKLFRSGAKPVLIATAVV 623
Query: 306 ELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
E G+DI VD VI Y P ++ I R GR+
Sbjct: 624 ERGLDIKGVDHVINYDMPNNIDDYIHRIGRT 654
>pir||H69124 translation initiation factor eIF-4A homolog - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621248|gb|AAB84709.1| (AE000807) ATP-dependent RNA
helicase, eIF-4A family [Methanobacterium
thermoautotrophicum]
Length = 425
Score = 76.5 bits (185), Expect = 1e-12
Identities = 77/313 (24%), Positives = 142/313 (44%), Gaps = 27/313 (8%)
Query: 29 EGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLLERLKWWEAK 88
+G V+ A TG+GKT A +PV+ ++ + +P L I P + L + E +K
Sbjct: 40 DGMDVVGEAQTGTGKTAAFAIPVLENLEAERVP--QALIICPTRELCLQVSEEIKRIGKY 97
Query: 89 TGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVT 148
+++ +G + + Q+R HV++ TP L + ++ L + VV+DE
Sbjct: 98 MKVKVLAVYGGQSIGNQIAQLRRGVHVIVATPGRL--IDHIERGTVDLGGISTVVLDEAD 155
Query: 149 ELIDNKRGAQLILNLKR-LSLIADFIRIGL-SATVGNE--EEVKEWLGVDEIVKPPLKKR 204
E+++ I +++R LS + + + L SATV ++++ ++++ K
Sbjct: 156 EMLN----MGFIDDIERILSHVPERRQTMLFSATVSKPILRIARKYMRNPQVMRVEKKHS 211
Query: 205 YKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRV-LVFVNTRQFAEVLAH 263
K + + R EDK ELL W + + R+ L+F NT++ + L
Sbjct: 212 PKIDEFYFKTREEDK--VELLD------------WILSSNNIRMGLIFCNTKRRVQRLRR 257
Query: 264 RLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSP 323
+L G + HG LS+ R + + G L+ T GI + +V+AV+ Y P
Sbjct: 258 QLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDVAARGIHVPDVEAVVNYDLP 317
Query: 324 RQVNRLIQRAGRS 336
+ + R GR+
Sbjct: 318 FENEYYVHRIGRT 330
>gb|AAK42080.1| ATP-dependent RNA helicase [Sulfolobus solfataricus]
Length = 343
Score = 76.1 bits (184), Expect = 2e-12
Identities = 85/338 (25%), Positives = 146/338 (43%), Gaps = 39/338 (11%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
L+KA+ E + + ++Q + GKSV+ A TGSGKT A ++P++
Sbjct: 9 LRKALSEAGYIKPTKVQEVVIPELLNGKSVIAQAKTGSGKTAAYVIPILER-------NS 61
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
+ L ++P + L +L+ ++ I + + G + Y +Q R +++ TP L
Sbjct: 62 TALILSPTRELATQILDEIRKLGKYKQIDVSLIIGGMS-YDGQRQSR----IVVGTPGRL 116
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNK--RGAQLILNLKRLSLIADFIRIGLSATV 181
L + + ++VDE ++D ++ILN + F SAT+
Sbjct: 117 LDLWSKGKID--FSGYDVIIVDEADRMLDMGFIDDIRMILNHSNAKITGFF-----SATI 169
Query: 182 GNE--EEVKEWL-GVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTL 238
+E KE+ + EIV K + K +F + R + + L ++
Sbjct: 170 PDEIMTLAKEFSKDLREIVLDEYKPVEEVKQIFVKVRNDWSDKVSKLLEEIS-------- 221
Query: 239 WEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+++LVF TR A L L+ G V + G + + R++ K+GK
Sbjct: 222 ------GEKILVFARTRDRARKLYFLLRGKGVNVGLLSGDMPQSVRLKNFYGFKKGKYNV 275
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
L+ T GIDI +VD VI + PR V I R GR+
Sbjct: 276 LVATDLASRGIDIVDVDKVINFDIPRDVETYIHRVGRT 313
>sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A-15 (EIF-4A-15) (EIF4A-15)
>gi|485945|emb|CAA55739.1| (X79138) NeIF-4A15 [Nicotiana
tabacum]
Length = 413
Score = 76.1 bits (184), Expect = 2e-12
Identities = 76/336 (22%), Positives = 150/336 (44%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT ++ + + L
Sbjct: 51 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYE-LLEC 109
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + + + HV++ TP +
Sbjct: 110 QALVLAPTRELAQQIEKVMRALGDYLGVKVTACVGGTSVREDQRILSSGVHVVVGTPGRV 169
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP +++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 170 FDMLRRQSLRP--DHIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 224
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 225 PEAL-------EITRKFMNK--PVRILVKRDELTLEGIKQFYVNVDKE-EWKLETLCDLY 274
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L ++++ V HG + + R R+ + G + LI
Sbjct: 275 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 334
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI + P Q + R GRS
Sbjct: 335 TTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 370
>gb|AAG22819.1|AF302423_1 (AF302423) RNA helicase II/Gu [Xenopus laevis]
Length = 759
Score = 74.9 bits (181), Expect = 4e-12
Identities = 72/330 (21%), Positives = 154/330 (45%), Gaps = 24/330 (7%)
Query: 19 LQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPIS-----CLYIAPLKA 73
+Q + F GK V++ A TG+GKT + +P++ + +D P + + P +
Sbjct: 205 IQSKTFHTAYSGKDVVVQARTGTGKTFSFAIPLVEKLNEDQQPLARGRAPRVIILTPTRE 264
Query: 74 LNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLR 133
L + ++ K +++ +G T ++ +++ L+ TP + L V++ R
Sbjct: 265 LAIQITNEIRSITKK--LKVSCFYGGTPYQQQVFAIKDGIDFLVGTPGRVRDL--VQNYR 320
Query: 134 PYLKNVRFVVVDEVTELIDNKRGAQL--ILNLKRLSLIADFIRIGL-SATVGNEEEVKEW 190
L ++ VV+DEV + D Q+ IL+++ + + + L SAT +W
Sbjct: 321 LDLTTLKHVVLDEVDMMFDMGFSEQVEEILSVRYKADPEENPQTLLFSATC------PDW 374
Query: 191 LGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVE----KHK 246
+ + K ++K+++ L + E L ++ + + L ++V+ H
Sbjct: 375 MY--NMAKKYMRKQFEKIDLIGHRSQKAATTVEHLAIECTRSQKAAVLGDLVQVYSGSHG 432
Query: 247 RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSME 306
+ ++F +++ A LA + + + HG L ++ R + ++G + LI T+
Sbjct: 433 KTIIFCDSKLEAHTLATSCGSLKQSAKSLHGDLQQKEREVVLKGFRQGTFEVLIATNVAA 492
Query: 307 LGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
G+DI EVD V+ Y +P++ + + R+GR+
Sbjct: 493 RGLDIPEVDLVVLYSAPKEADAYVHRSGRT 522
>dbj|BAB06103.1| (AP001515) ATP-dependent RNA helicase [Bacillus halodurans]
Length = 539
Score = 74.9 bits (181), Expect = 4e-12
Identities = 85/347 (24%), Positives = 145/347 (41%), Gaps = 44/347 (12%)
Query: 5 LKKAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
+KKAI E F E + +Q +A I G V+ A TG+GKT A +PV+ + +
Sbjct: 17 IKKAIIEMGFEEPSPIQAKAIPAILAGGDVIGQAQTGTGKTAAFGIPVVEKVSTGR--HV 74
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L + P + L + ++ IR +G + + K ++ V+I TP +
Sbjct: 75 QALILTPTRELAIQVSGEIQKLSKHKKIRTLPIYGGQSIVHQIKALKQGVQVVIGTPGRI 134
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
L K+L L +V V++DE E++D + I D I V N
Sbjct: 135 IDHLRRKTL--ILDHVNTVILDEADEMLD-------------MGFIDDIESI--LRQVKN 177
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVE 243
E + L + P +KK R D + + R +V + + ++++E
Sbjct: 178 ERQT---LLFSATMPPAIKK-------LSRKYMNDPQTVSINRREVTAPSIDQFYYKVLE 227
Query: 244 KHK-----RVL---------VFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAER 289
++K R++ +F T++ L L+ G + HG L++ R R
Sbjct: 228 RNKLDSLCRIIDSEQIDLGILFCRTKKGVAELTEALQARGYIADGLHGDLTQSQRDAVMR 287
Query: 290 KLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
K ++ ++ LI T GID+G V VI Y P+ + R GR+
Sbjct: 288 KFRDSSIEFLIATDVAARGIDVGNVSHVINYDIPQDPESYVHRIGRT 334
>gb|AAF49564.2| (AE003529) CG5931 gene product [Drosophila melanogaster]
Length = 2149
Score = 74.5 bits (180), Expect = 5e-12
Identities = 89/398 (22%), Positives = 171/398 (42%), Gaps = 82/398 (20%)
Query: 11 EKFRELNRLQIEAFKR-ISEGKSVLIIAPTGSGKTEAAILPVMNSILK----DG---LPP 62
E F+ LNR+Q +K + +++L+ APTG+GKT A+L +M I K DG
Sbjct: 495 EGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIGKHINEDGTINAQD 554
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
+Y+AP+K+L ++++ A + + GD ++ ++ V++ TPE
Sbjct: 555 FKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGD---HQLTREQIAATQVIVCTPEK 611
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRG----AQLILNLKRLSLIADFIR-IGL 177
+ R ++ VR V++DE+ L+ ++RG A + ++ + + +R +GL
Sbjct: 612 WDIITRKGGERTFVSLVRLVIIDEI-HLLHDERGPVLEALVARTIRNIETTQEEVRLVGL 670
Query: 178 SATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT 237
SAT+ N ++V +L V P K + F + RP E + + + R +
Sbjct: 671 SATLPNYQDVATFLRV-----KPDKGLFYFDNSY---RPVSLEQQYIGVTEKKALKRFQV 722
Query: 238 LWEIVEK-------HKRVLVFVNTRQFA--------------EVLAHRLKTWGKPVEV-- 274
+ EIV + +VLVFV++R+ + L LK +EV
Sbjct: 723 MNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSASMEVLR 782
Query: 275 ---------------------HHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGE 313
HH +++ R E + ++ L+ T+++ G+++
Sbjct: 783 TEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPA 842
Query: 314 VDAVIQ-------------YMSPRQVNRLIQRAGRSKH 338
+I+ +S V +++ RAGR ++
Sbjct: 843 HTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQY 880
>sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A-1 (EIF-4A-1) (EIF4A-1)
>gi|322503|pir||JC1452 translation initiation factor
eIF-4A1 - Arabidopsis thaliana >gi|16554|emb|CAA46188.1|
(X65052) eukaryotic translation initiation factor 4A-1
[Arabidopsis thaliana] >gi|9229290|dbj|BAA99593.1|
(AB019229) eukaryotic translation initiation factor; RNA
helicase [Arabidopsis thaliana]
Length = 412
Score = 74.5 bits (180), Expect = 5e-12
Identities = 77/338 (22%), Positives = 147/338 (42%), Gaps = 23/338 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 50 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDFSLIQC 108
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + ++ HV++ TP +
Sbjct: 109 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV 168
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLR N++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 169 FDMLKRQSLRA--DNIKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 223
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + ++ L + + V V +L TL +
Sbjct: 224 PEAL-------EITRKFMSKPVRILV-----KRDELTLEGIKQFYVNVEKEEWKLETLCD 271
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L ++++ V HG + + R R+ + G +
Sbjct: 272 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 331
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI + P Q + R GRS
Sbjct: 332 LITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 369
>sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-SODA INTERGENIC REGION
>gi|7446094|pir||D69954 ATP-dependent RNA helicase
homolog yqfR - Bacillus subtilis
>gi|1303839|dbj|BAA12495.1| (D84432) YqfR [Bacillus
subtilis] >gi|2634947|emb|CAB14444.1| (Z99116) similar
to ATP-dependent RNA helicase [Bacillus subtilis]
Length = 438
Score = 74.5 bits (180), Expect = 5e-12
Identities = 81/331 (24%), Positives = 148/331 (44%), Gaps = 25/331 (7%)
Query: 13 FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLK 72
F E +Q + + +SV+ + TG+GKT A +LP++N I + + AP +
Sbjct: 24 FYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLNKI-DPAKDVVQVVITAPTR 82
Query: 73 AL-NRDLLERLKWWEAKTG--IRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTV 129
L N+ E LK + + G IR G T + + +++ PH+++ TP + L+
Sbjct: 83 ELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKIQPHLVVGTPGRIADLIKE 142
Query: 130 KSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEEEVKE 189
++L + +V+DE ++D + +AD IG S + + +
Sbjct: 143 QALSVH--KAESLVIDEADLMLD-------------MGFLADVDYIG-SRMPEDLQMLVF 186
Query: 190 WLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT--LWEIVEKHKR 247
+ E +KP LKK Y + P+ A++ + + R + L++I+
Sbjct: 187 SATIPEKLKPFLKK-YMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMSHLNP 245
Query: 248 VL--VFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSM 305
L VF NT+ A+ +A L G + + HG L+ R + +++ + + +I T
Sbjct: 246 YLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYIIATDLA 305
Query: 306 ELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
GIDI V VI Y P ++ + R GR+
Sbjct: 306 ARGIDIKGVSHVINYELPDDLDFYVHRVGRT 336
>gi|11499835 ATP-dependent RNA helicase, DEAD-family (deaD) [Archaeoglobus
fulgidus] >gi|7446036|pir||F69531 ATP-dependent RNA
helicase, DEAD-family (deaD) homolog - Archaeoglobus
fulgidus >gi|2648271|gb|AAB89003.1| (AE000949)
ATP-dependent RNA helicase, DEAD-family (deaD)
[Archaeoglobus fulgidus]
Length = 368
Score = 74.5 bits (180), Expect = 5e-12
Identities = 79/336 (23%), Positives = 149/336 (43%), Gaps = 28/336 (8%)
Query: 8 AIKEK-FRELNRLQIEAFKRISEGKSVLI-IAPTGSGKTEAAILPVMNSILKDGLPPISC 65
A++ K F + +Q E R EG+ ++ A TGSGKT A LP+++ ++ + +
Sbjct: 21 AVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPILD-LVDERSKDVQA 79
Query: 66 LYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPA 125
+ I P + L + + ++ + + +G + + +++R +++ TP +
Sbjct: 80 IVITPTRELALQVKDEIESLRGGKKVHVLAVYGGQPIFPQIERLRKGVQIVVGTPGRVID 139
Query: 126 LLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNEE 185
L ++L L+ VRF V+DE ++D + I D RI A G E
Sbjct: 140 HLERRTLS--LEKVRFFVLDEADRMLD-------------MGFIDDIERILRHA--GAER 182
Query: 186 EVKEWLGVDEIVKPPLKKRYK--FKVLFPRPR--PEDKELAELLRVDVEVAARLRTLWEI 241
V + L +RY ++V+ + PE+ E L+V+ E R L I
Sbjct: 183 RVLMFSATMPPEVLRLARRYMRDYEVVRVHSKITPENVE-HRCLKVNPE--KRFEHLCRI 239
Query: 242 VEKHKRV-LVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
++++ +VF T++ L RL+ G + +G + + R R ++G + L+
Sbjct: 240 LDENNFYGIVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTRVLV 299
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T GID+ ++ V+ Y P+ I R GR+
Sbjct: 300 ATDVAARGIDVKDLTHVVNYSIPQDPEAYIHRTGRT 335
>pir||H82390 ATP-dependent RNA helicase, DEAD box family VCA0990 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9658432|gb|AAF96886.1| (AE004426) ATP-dependent RNA
helicase, DEAD box family [Vibrio cholerae]
Length = 428
Score = 74.5 bits (180), Expect = 5e-12
Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 20/334 (5%)
Query: 5 LKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPIS 64
L +A+ + E + +Q + GK V +A TGSGKT A LP++ + P
Sbjct: 34 LIQALPKAITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLLERLKTS--PEQQ 91
Query: 65 CLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLP 124
L + P + L + E L G+ G + + + P++L+ T L
Sbjct: 92 ALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNALAENPNILVATTGRLF 151
Query: 125 ALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGNE 184
L T LR L V +V+DE L+D Q+ + + + + SAT ++
Sbjct: 152 DL-TQSGLR--LNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVRQTVMC--SATFSDD 206
Query: 185 EEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEK 244
++K ++++ P + + P + + V ++ + L ++++
Sbjct: 207 LKLK----AQQLMRAPTQ-------VSANPENSINQAVQETLYLVNKGSKTQALVALLKQ 255
Query: 245 HK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICT 302
H+ +VLVF+ ++ A+ L +L G V HG S+ R A + K G + LI T
Sbjct: 256 HQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIAT 315
Query: 303 SSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
+ GI I + VI + P + R GR+
Sbjct: 316 DLLARGIHIELLPVVINFELPMHAETYVHRVGRT 349
>sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2) (EIF4A-2)
>gi|322504|pir||JC1453 translation initiation factor
eIF-4A2 - Arabidopsis thaliana >gi|16556|emb|CAA46189.1|
(X65053) eukaryotic translation initiation factor 4A-2
[Arabidopsis thaliana]
>gi|4585969|gb|AAD25605.1|AC005287_7 (AC005287)
Eukaryotic Initiation Factor 4A-2 [Arabidopsis thaliana]
Length = 412
Score = 74.1 bits (179), Expect = 6e-12
Identities = 77/338 (22%), Positives = 147/338 (42%), Gaps = 23/338 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 50 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDYALLQC 108
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + ++ HV++ TP +
Sbjct: 109 QALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV 168
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP ++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 169 FDMLRRQSLRPDC--IKMFVLDEADEMLSRGFKDQIY---DIFQLLPPKIQVGVFSATMP 223
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + ++ L + + V V +L TL +
Sbjct: 224 PEAL-------EITRKFMSKPVRILV-----KRDELTLEGIKQFYVNVEKEDWKLETLCD 271
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L ++++ V HG + + R R+ + G +
Sbjct: 272 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 331
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI + P Q + R GRS
Sbjct: 332 LITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 369
>sp|Q10202|YBX6_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C17D1.06
>gi|2130219|pir||S67386 probable ATP-dependent RNA
helicase - fission yeast (Schizosaccharomyces pombe)
>gi|7492421|pir||T39709 probable atp-dependent rna
helicase - fission yeast (Schizosaccharomyces pombe)
>gi|3451298|emb|CAA20430.1| (AL031322) putative
atp-dependent rna helicase [Schizosaccharomyces pombe]
Length = 578
Score = 74.1 bits (179), Expect = 6e-12
Identities = 88/350 (25%), Positives = 149/350 (42%), Gaps = 38/350 (10%)
Query: 5 LKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSI--LKDGLPP 62
L++ +K ++E +Q + + G+ V+ IA TGSGKT A +P + + L D
Sbjct: 178 LREGLKN-YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSV 236
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
L ++P + L E L T ++ V +G + +A+ +N V+I TP
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAKN-ASVIIGTPGR 295
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATV- 181
L L+ S+ V ++V+DE ++D Q I N+ +S D R G TV
Sbjct: 296 LLDLINDGSID--CSQVGYLVLDEADRMLDT-GFEQDIRNI--ISHTPDPTRNGSRQTVF 350
Query: 182 ---------------GNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLR 226
++ VK +G DE+ + + + PR +++ L LLR
Sbjct: 351 FSATWPESVRALAATFLKDPVKITIGSDELAAS--QNITQIVEILDDPRSKERMLDNLLR 408
Query: 227 VDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIE 286
+ K ++L+FV ++ A + L V + HG +S+ AR++
Sbjct: 409 KHLSSGG----------KDDKILIFVLYKKEAARVEGTLARKYNVVGI-HGDMSQGARLQ 457
Query: 287 AERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
A K GK L+ T G+DI +V VI P + + R GR+
Sbjct: 458 ALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRT 507
>dbj|BAB10456.1| (AB005234) RNA helicase [Arabidopsis thaliana]
Length = 522
Score = 74.1 bits (179), Expect = 6e-12
Identities = 89/376 (23%), Positives = 156/376 (40%), Gaps = 37/376 (9%)
Query: 7 KAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILK-------D 58
KAIK+ + + +Q I +GK VL A TG+GKT A +LP + ++K +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 59 GLPPISCLYIAPLKAL-NRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVR-NPPHVL 116
PPI L I P + L N+ E + I + V G T K+++ NP +L
Sbjct: 127 KRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQIL 186
Query: 117 ITTPETLPALL-TVKSLRPYLKNVRFVVVDEVTELIDN--KRGAQLILNL---KRLSLIA 170
+ TP L + LK V+ +V+DE L+D ++ + I++ +R + +
Sbjct: 187 VATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFL- 245
Query: 171 DFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVE 230
SATV E V +I L++ ++F E + + +
Sbjct: 246 ------FSATVPEE--------VRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIAS 291
Query: 231 VAARLRTLWEIVEKH------KRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEAR 284
+ L+ ++ +H +V+VF T +++A L V H + R
Sbjct: 292 LDRHFSLLYTLLREHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYR 351
Query: 285 IEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVS 344
+ ++ K L+ + G+D +V V+Q P+ + I R GR+ + E
Sbjct: 352 TRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIHRLGRTGRKGKEGE 411
Query: 345 EAYIIATGVEDYLQSL 360
++A E +L SL
Sbjct: 412 GILLLAPWEEYFLSSL 427
>gb|AAF47376.1| (AE003468) CG6994 gene product [Drosophila melanogaster]
Length = 1390
Score = 74.1 bits (179), Expect = 6e-12
Identities = 108/481 (22%), Positives = 178/481 (36%), Gaps = 77/481 (16%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILK-DGLPP 62
L+K K ++ +Q + I EG+ V+ +A TGSGKT ++P+ + + +
Sbjct: 613 LIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKG 672
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
L ++P + L + +K ++ + G + + + P V++ TP
Sbjct: 673 ARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGR 732
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRL--------------SL 168
L L+ L ++ +VV DE L + G QL L RL L
Sbjct: 733 FLHLCVEMDLK--LNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQTVMFSATLPKL 790
Query: 169 IADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVD 228
+ +F R GL+ V + +D V+ L K L+ RP L LL+
Sbjct: 791 LVEFARAGLNDPV--------LIRLD--VESKLPDALALKFLYCRPDDRYTALVVLLKYV 840
Query: 229 VEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAE 288
+ V ++ +VF T+ E++++ L G + SL AR
Sbjct: 841 IPVQSQ-------------TVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINT 887
Query: 289 RKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYI 348
K KV LI T GIDI +D V+ P + + R GR R AY
Sbjct: 888 AKFVNKKVSVLIVTDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCA-RAGRTGTAYS 946
Query: 349 IATGVEDYLQSLIIAKRAIEGKLERIKPYENALDVLAHFIVGLLIEYQKLNVHEPYRMAK 408
I + D AH + L + N+H+ A
Sbjct: 947 IV-----------------------------STDDTAHLLDLHLFLNRPFNIHD--SSAL 975
Query: 409 ETYPYRNLKWEHYLEVINVLEDAGIIRREEGILKLGRRAFKYYFDNLSTIPDEVSYKVVD 468
T P L+ EH L V ++ + I G+L+ A+K Y + + + +V
Sbjct: 976 GTIPQDLLEEEH-LTVTDIKKSHHI----AGVLRTSENAYKKYLSSRPVASTDANARVKK 1030
Query: 469 I 469
I
Sbjct: 1031 I 1031
>emb|CAA73167.1| (Y12590) translation initiation factor eIF4A I [Xenopus laevis]
Length = 406
Score = 73.7 bits (178), Expect = 8e-12
Identities = 78/338 (23%), Positives = 147/338 (43%), Gaps = 24/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q A +G V+ A +G+GKT + ++ I D +
Sbjct: 43 LLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-MKAT 101
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNP-PHVLITTPET 122
L +AP + L + + + + G G T +++++ PH+++ TP
Sbjct: 102 QALVLAPTRELAQQIQKVVMALGDYMGAGCHACIGGTDVRAEVQKLQSEAPHIVVGTPGR 161
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+ +L + L P K ++ V+DE E++ Q+ ++LS A + LSAT+
Sbjct: 162 VFDMLNRRYLSP--KYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQVVL--LSATMP 217
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLW 239
+ V E+ K ++ + V + E+ L + + + V +L TL
Sbjct: 218 AD--------VLEVTKKFMRDPIRILV-----KKEELTLEGIRQFYINVEREEWKLDTLC 264
Query: 240 EIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
++ E + ++F+NTR+ + L ++ V HG + ++ R R+ + G +
Sbjct: 265 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSR 324
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
LI T + GID+ +V VI Y P I R GR
Sbjct: 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 362
>pir||S13269 translation initiation factor eIF-4A.I - rabbit (fragment)
Length = 398
Score = 73.7 bits (178), Expect = 8e-12
Identities = 77/338 (22%), Positives = 146/338 (42%), Gaps = 24/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q A +G V+ A +G+GKT + ++ I D L
Sbjct: 35 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-LKAT 93
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVR-NPPHVLITTPET 122
L +AP + L + + + + G G T ++++ PH+++ TP
Sbjct: 94 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 153
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+ +L + L P K ++ V+DE E++ Q+ ++L+ + LSAT+
Sbjct: 154 VFDMLNRRYLSP--KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL--LSATMP 209
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLW 239
++ V E+ K ++ + V + E+ L + + + V +L TL
Sbjct: 210 SD--------VLEVTKKFMRDPIRILV-----KKEELTLEGIRQFYINVEREEWKLDTLC 256
Query: 240 EIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
++ E + ++F+NTR+ + L ++ V HG + ++ R R+ + G +
Sbjct: 257 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 316
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
LI T + GID+ +V VI Y P I R GR
Sbjct: 317 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 354
>emb|CAA26842.1| (X03039) put. eIF-4A (aa 1-390) [Mus musculus]
>gi|50819|emb|CAA26845.1| (X03040) put. eIF-4A (aa
1-390) [Mus musculus]
Length = 390
Score = 73.7 bits (178), Expect = 8e-12
Identities = 77/338 (22%), Positives = 146/338 (42%), Gaps = 24/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q A +G V+ A +G+GKT + ++ I D L
Sbjct: 27 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-LKAT 85
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVR-NPPHVLITTPET 122
L +AP + L + + + + G G T ++++ PH+++ TP
Sbjct: 86 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 145
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+ +L + L P K ++ V+DE E++ Q+ ++L+ + LSAT+
Sbjct: 146 VFDMLNRRYLSP--KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL--LSATMP 201
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLW 239
++ V E+ K ++ + V + E+ L + + + V +L TL
Sbjct: 202 SD--------VLEVTKKFMRDPIRILV-----KKEELTLEGIRQFYINVEREEWKLDTLC 248
Query: 240 EIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
++ E + ++F+NTR+ + L ++ V HG + ++ R R+ + G +
Sbjct: 249 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 308
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
LI T + GID+ +V VI Y P I R GR
Sbjct: 309 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 346
>emb|CAA26843.1| (X03039) put. altern. eIF-4A (aa 1-370) [Mus musculus]
>gi|50820|emb|CAA26846.1| (X03040) put. altern. eIF-4A
(aa 1-370) [Mus musculus]
Length = 370
Score = 73.7 bits (178), Expect = 8e-12
Identities = 77/338 (22%), Positives = 146/338 (42%), Gaps = 24/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q A +G V+ A +G+GKT + ++ I D L
Sbjct: 7 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-LKAT 65
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVR-NPPHVLITTPET 122
L +AP + L + + + + G G T ++++ PH+++ TP
Sbjct: 66 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 125
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+ +L + L P K ++ V+DE E++ Q+ ++L+ + LSAT+
Sbjct: 126 VFDMLNRRYLSP--KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL--LSATMP 181
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLW 239
++ V E+ K ++ + V + E+ L + + + V +L TL
Sbjct: 182 SD--------VLEVTKKFMRDPIRILV-----KKEELTLEGIRQFYINVEREEWKLDTLC 228
Query: 240 EIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
++ E + ++F+NTR+ + L ++ V HG + ++ R R+ + G +
Sbjct: 229 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 288
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
LI T + GID+ +V VI Y P I R GR
Sbjct: 289 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 326
>pir||S00986 translation initiation factor eIF-4A I - mouse
Length = 407
Score = 73.7 bits (178), Expect = 8e-12
Identities = 78/338 (23%), Positives = 146/338 (43%), Gaps = 24/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q A +G V+ A +G+GKT + ++ I D L
Sbjct: 44 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-LKAT 102
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVR-NPPHVLITTPET 122
L +AP + L + + + + G G T ++++ PH++I TP
Sbjct: 103 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIVIGTPGR 162
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+ +L + L P K ++ V+DE E++ Q+ ++L+ + LSAT+
Sbjct: 163 VFDMLNRRYLSP--KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL--LSATMP 218
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLW 239
++ V E+ K ++ + V + E+ L + + + V +L TL
Sbjct: 219 SD--------VLEVTKKFMRDPIRILV-----KKEELTLEGIRQFYINVEREEWKLDTLC 265
Query: 240 EIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
++ E + ++F+NTR+ + L ++ V HG + ++ R R+ + G +
Sbjct: 266 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 325
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
LI T + GID+ +V VI Y P I R GR
Sbjct: 326 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 363
>gi|4503529 eukaryotic translation initiation factor 4A, isoform 1 [Homo
sapiens] >gi|417180|sp|P04765|IF41_HUMAN EUKARYOTIC
INITIATION FACTOR 4A-I (EIF-4A-I) >gi|422959|pir||S33681
translation initiation factor eIF-4A.I - human
>gi|7428973|pir||FIMS4A translation initiation factor
eIF-4A I - mouse >gi|219403|dbj|BAA02897.1| (D13748)
eukaryotic initiation factor 4AI [Homo sapiens]
>gi|2943740|dbj|BAA25075.1| (AB011595) eIF4A [Mus
musculus] >gi|227238|prf||1617105B initiation factor 4AI
[Oryctolagus cuniculus]
Length = 406
Score = 73.7 bits (178), Expect = 8e-12
Identities = 77/338 (22%), Positives = 146/338 (42%), Gaps = 24/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q A +G V+ A +G+GKT + ++ I D L
Sbjct: 43 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-LKAT 101
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVR-NPPHVLITTPET 122
L +AP + L + + + + G G T ++++ PH+++ TP
Sbjct: 102 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 161
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+ +L + L P K ++ V+DE E++ Q+ ++L+ + LSAT+
Sbjct: 162 VFDMLNRRYLSP--KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL--LSATMP 217
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLW 239
++ V E+ K ++ + V + E+ L + + + V +L TL
Sbjct: 218 SD--------VLEVTKKFMRDPIRILV-----KKEELTLEGIRQFYINVEREEWKLDTLC 264
Query: 240 EIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
++ E + ++F+NTR+ + L ++ V HG + ++ R R+ + G +
Sbjct: 265 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 324
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
LI T + GID+ +V VI Y P I R GR
Sbjct: 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 362
>sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I) (EIF4A-I)
Length = 394
Score = 73.7 bits (178), Expect = 8e-12
Identities = 77/338 (22%), Positives = 146/338 (42%), Gaps = 24/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q A +G V+ A +G+GKT + ++ I D L
Sbjct: 31 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-LKAT 89
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVR-NPPHVLITTPET 122
L +AP + L + + + + G G T ++++ PH+++ TP
Sbjct: 90 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 149
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+ +L + L P K ++ V+DE E++ Q+ ++L+ + LSAT+
Sbjct: 150 VFDMLNRRYLSP--KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL--LSATMP 205
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLW 239
++ V E+ K ++ + V + E+ L + + + V +L TL
Sbjct: 206 SD--------VLEVTKKFMRDPIRILV-----KKEELTLEGIRQFYINVEREEWKLDTLC 252
Query: 240 EIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
++ E + ++F+NTR+ + L ++ V HG + ++ R R+ + G +
Sbjct: 253 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR 312
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
LI T + GID+ +V VI Y P I R GR
Sbjct: 313 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 350
>sp|P34640|YOQ2_CAEEL PUTATIVE ATP-DEPENDENT RNA HELICASE ZK512.2 IN CHROMOSOME III
>gi|3881691|emb|CAA80151.1| (Z22177) similar to RNA
binding proteins (helicase etc.), contains similarity to
Pfam domain: PF00270 (DEAD/DEAH box helicase),
Score=160.4, E-value=2.8e-50, N=1; PF00271 (Helicases
conserved C-terminal domain), Score=101.9,
E-value=4e-27, N=1~cDNA EST>
Length = 578
Score = 73.7 bits (178), Expect = 8e-12
Identities = 86/383 (22%), Positives = 164/383 (42%), Gaps = 29/383 (7%)
Query: 5 LKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP-- 62
L + + ++ +Q+ + + V++ +PTGSGKT A +LP+M I L P
Sbjct: 21 LLEVFDKSYKSFTDVQVLSGTHLLNLSDVVVESPTGSGKTLAFVLPMMRMIQNAKLQPAD 80
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPP-HVLITTPE 121
I L ++P + L ++ ++ + K + ++ G + K +N ++L+ TP
Sbjct: 81 IGALILSPSRELCSQIVSVIQPFAEKLNLTVETVTGGQKVDKNIKMFKNKNVNILVATPG 140
Query: 122 TLPALLTVKS--LRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKR-LSLIADFIRIGLS 178
L ++ + + ++ ++ +V+DE D Q +++ LS I R GL
Sbjct: 141 RLFQIIQHEKTLIARKMRTLQLLVIDEA----DRFNEIQFEDHMREILSCIPKQRRTGLF 196
Query: 179 ATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRTL 238
+ +EE D+++ L+ + KV R L V+ +
Sbjct: 197 SATQVKEE-------DDLMVFGLRNAKQVKVAQERNSAAPSTLKNYY-VECRADEKTSVC 248
Query: 239 WEIVEKH--KRVLVFV----NTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLK 292
E + + K++L+F + R F ++ L +P+ HG S R +
Sbjct: 249 LEFIRQRTDKKILIFFPSCNSVRYFYKIFERCLGK--RPLFAVHGKCSNPHRASQIKAFS 306
Query: 293 EGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATG 352
+ +I T M GIDI ++D VIQ+ P+ + + RAGR+ E + +IA+
Sbjct: 307 DSTNGVMISTDVMARGIDISDIDWVIQFDLPKHSSWFVHRAGRTARCGREGNALILIASE 366
Query: 353 VEDYLQSLIIAKRAIEGKLERIK 375
Y+ L ++ KL+ IK
Sbjct: 367 QLAYVNFLDNHEKV---KLDEIK 386
>gb|AAB39865.1| (U81597) ATP-dependent RNA helicase [Leishmania amazonensis]
Length = 855
Score = 73.4 bits (177), Expect = 1e-11
Identities = 75/341 (21%), Positives = 148/341 (42%), Gaps = 21/341 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSI-LKDGLPP 62
LL +K+ F +Q +A + +G V+ +A TGSGKT A ++P++N++ +
Sbjct: 35 LLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFLIPMLNTLKAHSKIVG 94
Query: 63 ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPET 122
I L ++P + L+ +L +R G + ++ + + + P +++ TP
Sbjct: 95 IRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFELLASNPDIVVATPGR 154
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
L ++ SL +L +VR +V+DE L + Q+ +++L +
Sbjct: 155 LLHIMEEASL--HLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPESCQRALFSATMPTV 212
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA------RLR 236
E WL +++ + + ++ K+ A L+R D +VAA R+
Sbjct: 213 LAEFTSAWLHNPVVIRLDSEMKLSDQL---------KQSAFLVRNDEKVAALIVLLKRVL 263
Query: 237 TLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKL--KEG 294
+ E + + L+FV ++ E L L + HG + +EAR A R +E
Sbjct: 264 HVGEAAANNAQALIFVESKFHVEFLLMILTAYSISTSAVHGQMDQEARRLAVRSFAKRES 323
Query: 295 KVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
V + ++ G+D+ +D ++ + P + R GR
Sbjct: 324 SVMVVTDVAARGYGLDL-LLDNIVYFSFPFNPKLFVHRVGR 363
>dbj|BAB01768.1| (AB022215) DEAD-Box RNA helicase-like protein [Arabidopsis
thaliana]
Length = 610
Score = 73.4 bits (177), Expect = 1e-11
Identities = 82/343 (23%), Positives = 152/343 (43%), Gaps = 33/343 (9%)
Query: 7 KAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILK------DG 59
KA+K + +L +Q + EG+ ++ A TG+GKT A +P+++ I+K G
Sbjct: 129 KALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRG 188
Query: 60 LPPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITT 119
P CL +AP + L R + + + E+ + +G T ++ +++ V + T
Sbjct: 189 KNP-QCLVLAPTRELARQVEKEFR--ESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGT 245
Query: 120 PETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSA 179
P + L+ +L L V+FVV+DE +++ + + L++L A + SA
Sbjct: 246 PGRIIDLMKRGALN--LSEVQFVVLDEADQMLQVGFAEDVEIILQKLP--AKRQSMMFSA 301
Query: 180 TVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAE---LLRVDVEVAARLR 236
T+ + W ++ KK + D++LA+ + + + R
Sbjct: 302 TMPS------W------IRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRAS 349
Query: 237 TLWEIVEKHKR---VLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKE 293
+ +V++H + +VF T++ A+ LA L K E HG +S+ R ++
Sbjct: 350 IIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYK-CEALHGDISQAQRERTLAGFRD 408
Query: 294 GKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
G L+ T G+D+ VD VI Y P + R GR+
Sbjct: 409 GNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRT 451
>emb|CAA73168.1| (Y12591) translation initiation factor eIF4A II [Xenopus laevis]
Length = 413
Score = 73.0 bits (176), Expect = 1e-11
Identities = 79/339 (23%), Positives = 148/339 (43%), Gaps = 25/339 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q A +G V+ A +G+GKT + ++ I D +
Sbjct: 49 LLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-MKAT 107
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNP-PHVLITTPET 122
L +AP + L + + + + G G T +++++ PH+++ TP
Sbjct: 108 QALMLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQSEAPHIIVGTPGR 167
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLI-LNLKRLSLIADFIRIGLSATV 181
+ +L + L P K ++ V+DE E++ Q+ + K LS+ A + LSAT+
Sbjct: 168 VFDMLNRRYLSP--KYIKMFVLDEADEMLSRGFKDQIYDIFQKVLSMNAQVVL--LSATM 223
Query: 182 GNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTL 238
+ V E+ K ++ + V + E+ L + + + V +L TL
Sbjct: 224 PAD--------VLEVTKKFMRDPIRILV-----KKEELTLEGIRQFYINVEREEWKLDTL 270
Query: 239 WEIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKV 296
++ E + ++F+NTR+ + L ++ V HG + ++ R R+ + G
Sbjct: 271 CDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSS 330
Query: 297 KALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
+ LI T + GID+ +V VI Y P I R GR
Sbjct: 331 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 369
>dbj|BAA28347.1| (AB010259) DRH1 [Arabidopsis thaliana]
>gi|6016713|gb|AAF01539.1|AC009325_9 (AC009325) RNA
helicase, DRH1 [Arabidopsis thaliana]
Length = 619
Score = 73.0 bits (176), Expect = 1e-11
Identities = 78/378 (20%), Positives = 159/378 (41%), Gaps = 21/378 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILP---VMNSILKDGL 60
LL++ + F +Q +++ +G+ ++ IA TGSGKT ++P + I D
Sbjct: 169 LLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR 228
Query: 61 PPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTP 120
+ L ++P + L + E + + I +G + + + + +++ TP
Sbjct: 229 MGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATP 288
Query: 121 ETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSAT 180
L +L ++ R L+ + ++V+DE ++D Q+ +K + R L T
Sbjct: 289 GRLNDILEMR--RISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPT----KRQTLMYT 342
Query: 181 VGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRV--DVEVAARLRTL 238
+ V++ + D +V P L +K + + + V +E RL +
Sbjct: 343 ATWPKGVRK-IAADLLVNPAQVNIGNVDELV-----ANKSITQHIEVVAPMEKQRRLEQI 396
Query: 239 WEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
E +V++F +T++ + L L + HG S+ R + + G+
Sbjct: 397 LRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAI-HGDKSQPERDNVLNQFRSGRTPV 455
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQ 358
L+ T G+D+ ++ AV+ Y P V + R GR+ R +A+ +
Sbjct: 456 LVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRT-GRAGATGQAFTFFGDQDSKHA 514
Query: 359 SLIIAKRAIEGKLERIKP 376
S +I + +EG +R+ P
Sbjct: 515 SDLI--KILEGANQRVPP 530
>gi|6320400 Mitochondrial DEAD box RNA helicase; Mss116p [Saccharomyces
cerevisiae] >gi|127324|sp|P15424|MS16_YEAST
ATP-DEPENDENT RNA HELICASE MSS116 PRECURSOR
>gi|83510|pir||S02116 RNA helicase MSS116 - yeast
(Saccharomyces cerevisiae) >gi|755787|emb|CAA88707.1|
(Z48784) Mss116p [Saccharomyces cerevisiae]
Length = 664
Score = 72.6 bits (175), Expect = 2e-11
Identities = 96/408 (23%), Positives = 168/408 (40%), Gaps = 52/408 (12%)
Query: 6 KKAIKEKFRELNRLQIEAFKRI--SEGKSVLIIAPTGSGKTEAAILPVMNSILK---DGL 60
K + +F L +Q + K I SE V+ A TG+GKT A ++P+ ++ D
Sbjct: 119 KAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 178
Query: 61 PPISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHG----------DTTQYRRAKQVR 110
+ + +AP RDL ++ EA+ D+ +G T +R A
Sbjct: 179 YMVKAVIVAP----TRDLALQI---EAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM 231
Query: 111 NP--PHVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELI-----DNKRGAQLILNL 163
N P+++I TP L +L K + + V + V+DE L+ D+ ILN
Sbjct: 232 NKLRPNIVIATPGRLIDVLE-KYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNE 290
Query: 164 KRLSLIADFIRIGLSATVGNEEEV--------KEWLGVDEIVK--PPLKKRYKFKVLFPR 213
K + + SAT+ ++ + KE L +D + K P +R V+
Sbjct: 291 KNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISE 350
Query: 214 PRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGK--- 270
+ + A + + ++ R + + + ++F T +F L LK K
Sbjct: 351 -KFANSIFAAVEHIKKQIKER--------DSNYKAIIFAPTVKFTSFLCSILKNEFKKDL 401
Query: 271 PVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLI 330
P+ HG +++ R ++ K+ + L+CT G+D V V+Q P ++ I
Sbjct: 402 PILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYI 461
Query: 331 QRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKPYE 378
R GR+ E S I +++ L AK + K E+ +P E
Sbjct: 462 HRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSE 509
>pir||T51347 RNA helicase RH23 [imported] - Arabidopsis thaliana (fragment)
>gi|3776021|emb|CAA09211.1| (AJ010472) RNA helicase
[Arabidopsis thaliana]
Length = 441
Score = 72.6 bits (175), Expect = 2e-11
Identities = 77/336 (22%), Positives = 147/336 (42%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 79 LLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDISLVQC 137
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G++ G T+ + +++ HV++ TP +
Sbjct: 138 QALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRV 197
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
LL +SLR ++ V+DE E++ Q+ L+ +++G+ +
Sbjct: 198 FDLLRRQSLRA--DAIKMFVLDEADEMLSRGFKDQIY---DIFQLLPSKVQVGVFSATMP 252
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 253 PEAL-------EITRKFMNK--PVRILVKRDELTLEGIKQFYVNVDKE-EWKLETLCDLY 302
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L ++++ V HG + + R R+ + G + LI
Sbjct: 303 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 362
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI + P Q + R GRS
Sbjct: 363 TTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 398
>gb|AAF21155.1|AC010926_7 (AC010926) putative Eukaryotic initiation factor 4A; 30924-32477
[Arabidopsis thaliana]
Length = 414
Score = 72.6 bits (175), Expect = 2e-11
Identities = 77/336 (22%), Positives = 147/336 (42%), Gaps = 19/336 (5%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT V+ L L
Sbjct: 52 LLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQ-LDISLVQC 110
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G++ G T+ + +++ HV++ TP +
Sbjct: 111 QALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRV 170
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
LL +SLR ++ V+DE E++ Q+ L+ +++G+ +
Sbjct: 171 FDLLRRQSLRA--DAIKMFVLDEADEMLSRGFKDQIY---DIFQLLPSKVQVGVFSATMP 225
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAEL-LRVDVEVAARLRTLWEIV 242
E + EI + + K ++L R + + + + VD E +L TL ++
Sbjct: 226 PEAL-------EITRKFMNK--PVRILVKRDELTLEGIKQFYVNVDKE-EWKLETLCDLY 275
Query: 243 EKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALI 300
E + ++FVNTR+ + L ++++ V HG + + R R+ + G + LI
Sbjct: 276 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 335
Query: 301 CTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
T + GID+ +V VI + P Q + R GRS
Sbjct: 336 TTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRS 371
>gb|AAF54192.1| (AE003677) CG7878 gene product [Drosophila melanogaster]
Length = 703
Score = 72.6 bits (175), Expect = 2e-11
Identities = 74/341 (21%), Positives = 149/341 (42%), Gaps = 22/341 (6%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP- 62
+L++ K F + + +Q +A+ + +G ++ IA TG+GKT A +LP M P
Sbjct: 294 MLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPRG 353
Query: 63 ----ISCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLIT 118
+ L +AP + L + +K + + G++ +G + + + ++I
Sbjct: 354 TRGGANVLVLAPTRELALQIEMEVKKYSFR-GMKAVCVYGGGNRNMQISDLERGAEIIIC 412
Query: 119 TPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLS 178
TP L L+ + + + ++V+DE ++D G + + L + D I S
Sbjct: 413 TPGRLNDLIMANVID--VSTITYLVLDEADRMLD--MGFEPQIRKVMLDIRPDRQTIMTS 468
Query: 179 ATVGNEEEVKEWL-GVDEIVKPPLKKRYKFKV--LFPRPRPEDKELAELLRVDVEVAARL 235
AT W GV + + +K + V L K++ +L+ D++ +
Sbjct: 469 AT---------WPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTI 519
Query: 236 RTLWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGK 295
+ + + ++++F + A+ L+ L G + HG+ + R +A +K G
Sbjct: 520 TSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGV 579
Query: 296 VKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
V+ L+ T G+DI ++ VI Y P + + R GR+
Sbjct: 580 VRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRT 620
>pir||JS0039 translation initiation factor eIF-4A - mouse
>gi|556308|gb|AAA50407.1| (L36611) protein synthesis
initiation factor 4A [Mus musculus]
Length = 406
Score = 72.2 bits (174), Expect = 2e-11
Identities = 77/338 (22%), Positives = 146/338 (42%), Gaps = 24/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q A +G V+ A +G+GKT + ++ I D L
Sbjct: 43 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-LKAT 101
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVR-NPPHVLITTPET 122
L +AP + L + + + + G G T ++++ PH+++ TP
Sbjct: 102 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGR 161
Query: 123 LPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVG 182
+ +L + L P K ++ V+DE E++ Q+ ++L+ + LSAT+
Sbjct: 162 VFDMLNRRYLSP--KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVL--LSATMP 217
Query: 183 NEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLW 239
++ V E+ K ++ + V + E+ L + + + V +L TL
Sbjct: 218 SD--------VLEVTKKFMRDPIRILV-----KKEELTLEGIRQFYINVEREEWKLDTLC 264
Query: 240 EIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
++ E + ++F+NTR+ + L ++ V HG + ++ R R+ + G +
Sbjct: 265 DLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSR 324
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGR 335
LI T + GID+ +V VI Y P I R GR
Sbjct: 325 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGR 362
>gi|6321267 RNA helicase involved in rRNA processing; Rok1p [Saccharomyces
cerevisiae] >gi|1173121|sp|P45818|ROK1_YEAST
ATP-DEPENDENT RNA HELICASE ROK1 >gi|2131186|pir||S59649
ATP-dependent RNA helicase ROK1 - yeast (Saccharomyces
cerevisiae) >gi|607182|emb|CAA84384.1| (Z34901)
ATP-dependent RNA helicase [Saccharomyces cerevisiae]
>gi|971382|emb|CAA59758.1| (X85757) putative ATP
dependent RNA helicase [Saccharomyces cerevisiae]
>gi|1322774|emb|CAA96883.1| (Z72693) ORF YGL171w
[Saccharomyces cerevisiae]
Length = 564
Score = 72.2 bits (174), Expect = 2e-11
Identities = 83/348 (23%), Positives = 151/348 (42%), Gaps = 32/348 (9%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP- 62
LL I+ F E +Q E + VL PTGSGKT A ++P++ I+ D
Sbjct: 133 LLNNLIENGFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQIIDDKQTAG 192
Query: 63 ISCLYIAPLKAL-NRDLLERLK-----WWEAKTGIRIDVRHGDTTQYRRAKQVRNPPH-V 115
+ L I+P K L N+ +E K + E K +++ + + K V + + +
Sbjct: 193 LKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVVSDKKYDI 252
Query: 116 LITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDN---KRGAQLILNLKRLSLIADF 172
+I+TP L + VK+ L V+ ++ DE +L D ++ ++ + SL
Sbjct: 253 IISTP--LRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPSLR--- 307
Query: 173 IRIGLSATV-GNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEV 231
+ SAT+ N EE+ + + +D + +V+ + + + L
Sbjct: 308 -KAMFSATIPSNVEEIAQSIMMDPV-----------RVIIGHKEAANTNIEQKLIFCGNE 355
Query: 232 AARLRTLWEIVEKHK---RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAE 288
+L + ++V++ + +++F+ + A+ L H L V+V H + R
Sbjct: 356 EGKLIAIRQLVQEGEFKPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRII 415
Query: 289 RKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
+ K G++ LICT + GID V+ VI Y P + R GR+
Sbjct: 416 ERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRT 463
>gb|AAF24007.1|AF083031_4 (AF083031) eukaryotic initiation factor 4a [Guillardia theta]
Length = 385
Score = 72.2 bits (174), Expect = 2e-11
Identities = 81/339 (23%), Positives = 147/339 (42%), Gaps = 25/339 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LLK F + +Q I + V+ + +G+GKT ++ + + L + I
Sbjct: 23 LLKGIYGYGFERPSFIQQRGILPIINKEDVVAQSQSGTGKTATFVIGTLQN-LSNIENKI 81
Query: 64 SCLYIAPLKALNRDLLERLK----WWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITT 119
L + P + L + + K + + KT + + GD Q +Q + P ++I T
Sbjct: 82 KNLVLVPTRELATQVEQVFKSIGFFMKIKTQL---LTGGDRIQITNKEQYKKP-QIVIGT 137
Query: 120 PETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSA 179
P + L+ K+ Y++N+ ++VVDE E+ Q++ +K L L A +
Sbjct: 138 PGKVLDSLSKKTY--YIENLEYLVVDEADEMFSRGFKIQVLKIIKYLPLEAKIALFSATM 195
Query: 180 TVGNEEEVKEWLG--VDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAARLRT 237
+ E V+ ++ V +VK K + E+ +L ++ + ++
Sbjct: 196 PIETLEIVELFMTNPVKILVKKDELTLEGIKQFYIAIEKEEWKLDSVIEIYSKI------ 249
Query: 238 LWEIVEKHKRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVK 297
K + +++VNTR+ E LA+ +K +G V HG + + R + + G +
Sbjct: 250 ------KITQSIIYVNTRRKTEWLANIMKKYGFDVGYLHGEMLQIDRSSVMKDFRSGLFR 303
Query: 298 ALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GIDI +V VI Y P+ I R GRS
Sbjct: 304 ILISTDLVSRGIDIQQVCLVINYDLPKLKEVYIHRIGRS 342
>pir||S40763 hypothetical protein ZK512.2 - Caenorhabditis elegans
Length = 578
Score = 71.8 bits (173), Expect = 3e-11
Identities = 84/355 (23%), Positives = 154/355 (42%), Gaps = 29/355 (8%)
Query: 33 VLIIAPTGSGKTEAAILPVMNSILKDGLPP--ISCLYIAPLKALNRDLLERLKWWEAKTG 90
V++ +PTGSGKT A +LP+M I L P I L ++P + L ++ ++ + K
Sbjct: 23 VVVESPTGSGKTLAFVLPMMRMIQNAKLQPADIGALILSPSRELCSQIVSVIQPFAEKLN 82
Query: 91 IRIDVRHGDTTQYRRAKQVRNPP-HVLITTPETLPALLTVKS--LRPYLKNVRFVVVDEV 147
+ ++ G + K +N ++L+ TP L ++ + + ++ ++ +V+DE
Sbjct: 83 LTVETVTGGQKVDKNIKMFKNKNVNILVATPGRLFQIIQHEKTLIARKMRTLQLLVIDEA 142
Query: 148 TELIDNKRGAQLILNLKR-LSLIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYK 206
D Q +++ LS I R GL + +EE D+++ L+ +
Sbjct: 143 ----DRFNEIQFEDHMREILSCIPKQRRTGLFSATQVKEE-------DDLMVFGLRNAKQ 191
Query: 207 FKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKH--KRVLVFV----NTRQFAEV 260
KV R L V+ + E + + K++L+F + R F ++
Sbjct: 192 VKVAQERNSAAPSTLKNYY-VECRADEKTSVCLEFIRQRTDKKILIFFPSCNSVRYFYKI 250
Query: 261 LAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQY 320
L +P+ HG S R + + +I T M GIDI ++D VIQ+
Sbjct: 251 FERCLGK--RPLFAVHGKCSNPHRASQIKAFSDSTNGVMISTDVMARGIDISDIDWVIQF 308
Query: 321 MSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIK 375
P+ + + RAGR+ E + +IA+ Y+ L ++ KL+ IK
Sbjct: 309 DLPKHSSWFVHRAGRTARCGREGNALILIASEQLAYVNFLDNHEKV---KLDEIK 360
>gb|AAD55444.1|AF181659_1 (AF181659) BcDNA.GM05306 [Drosophila melanogaster]
Length = 641
Score = 71.8 bits (173), Expect = 3e-11
Identities = 97/382 (25%), Positives = 165/382 (42%), Gaps = 32/382 (8%)
Query: 30 GKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISC---LYIAPLKALNRDLLERLKWWE 86
G+ + A TG+GKT A +LP + +L L + L + P + L + + K
Sbjct: 194 GRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLC 253
Query: 87 AKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPY-LKNVRFVVVD 145
T I + + G + +R P ++I TP L + +K+ + L ++ +++D
Sbjct: 254 QFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRL--IDHIKNTPSFTLDSIEVLILD 311
Query: 146 EVTELIDNKRGAQL--ILNLKRLSLIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKK 203
E ++D Q+ I+N S + SAT+ + + + +D+ +K +
Sbjct: 312 EADRMLDEYFAEQMKEIIN----SCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNN 367
Query: 204 R----YKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAE 259
+ + F R R EDKE R + + RT H +VFV T++ A
Sbjct: 368 NQQVAFNLRQEFIRIR-EDKEGD---REPILASLICRTF------HDHCMVFVQTKKQAH 417
Query: 260 VLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQ 319
L L G HG+L+++ R+E+ +K KE ++ LI T G+DI V VI
Sbjct: 418 RLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVIN 477
Query: 320 YMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLII--AKRAIEGKL---ERI 374
++ P I R GR+ R + +A E + II A+ I+ ++ E I
Sbjct: 478 FVMPITTEHYIHRVGRTA-RAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEII 536
Query: 375 KPYENALDVLAHFIVGLLIEYQ 396
+ Y N L L I +L E Q
Sbjct: 537 EKYRNKLTSLEPEIQNILDEEQ 558
>gb|AAF59119.1| (AE003838) BcDNA:GM05306 gene product [Drosophila melanogaster]
Length = 782
Score = 71.8 bits (173), Expect = 3e-11
Identities = 97/382 (25%), Positives = 165/382 (42%), Gaps = 32/382 (8%)
Query: 30 GKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISC---LYIAPLKALNRDLLERLKWWE 86
G+ + A TG+GKT A +LP + +L L + L + P + L + + K
Sbjct: 194 GRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLC 253
Query: 87 AKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPY-LKNVRFVVVD 145
T I + + G + +R P ++I TP L + +K+ + L ++ +++D
Sbjct: 254 QFTTIDVGLAIGGLDVKAQEAVLRQNPDIVIATPGRL--IDHIKNTPSFTLDSIEVLILD 311
Query: 146 EVTELIDNKRGAQL--ILNLKRLSLIADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKK 203
E ++D Q+ I+N S + SAT+ + + + +D+ +K +
Sbjct: 312 EADRMLDEYFAEQMKEIIN----SCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNN 367
Query: 204 R----YKFKVLFPRPRPEDKELAELLRVDVEVAARLRTLWEIVEKHKRVLVFVNTRQFAE 259
+ + F R R EDKE R + + RT H +VFV T++ A
Sbjct: 368 NQQVAFNLRQEFIRIR-EDKEGD---REPILASLICRTF------HDHCMVFVQTKKQAH 417
Query: 260 VLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQ 319
L L G HG+L+++ R+E+ +K KE ++ LI T G+DI V VI
Sbjct: 418 RLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDVLIATDVAARGLDIVGVKTVIN 477
Query: 320 YMSPRQVNRLIQRAGRSKHRLLEVSEAYIIATGVEDYLQSLII--AKRAIEGKL---ERI 374
++ P I R GR+ R + +A E + II A+ I+ ++ E I
Sbjct: 478 FVMPITTEHYIHRVGRTA-RAGRAGISVSLAGEKERKIVKDIIKNAESTIKNRIIPPEII 536
Query: 375 KPYENALDVLAHFIVGLLIEYQ 396
+ Y N L L I +L E Q
Sbjct: 537 EKYRNKLTSLEPEIQNILDEEQ 558
>pir||T09159 RNA helicase prh75 - spinach >gi|1488647|emb|CAA68193.1| (X99937)
RNA helicase [Spinacia oleracea]
Length = 685
Score = 71.4 bits (172), Expect = 4e-11
Identities = 80/346 (23%), Positives = 148/346 (42%), Gaps = 30/346 (8%)
Query: 3 ILLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP 62
+L+ K IK F +Q F + +G ++ A TG GKT A +LP++ S++
Sbjct: 121 VLISKGIKALFP----IQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKD 176
Query: 63 I---------SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPP 113
+ S L + P + L +L + + G+ +G + + +
Sbjct: 177 LRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGV 236
Query: 114 HVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFI 173
+++ TP + LL L+ L ++ F V+DE E++ + L L ++ ++
Sbjct: 237 DIVVGTPGRVKDLLEKGVLK--LGSLLFRVLDEADEMLKMGFVDDVELILGKVDHVSKVQ 294
Query: 174 RIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA 233
+ SAT+ + W V +I LK K L + + + + +A
Sbjct: 295 TLLFSATLPS------W--VKQISTRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASA 346
Query: 234 RLRTLWEIVEKHK---RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERK 290
R + +I+ + R ++F T++ A LA L T +P+ HG + + R +
Sbjct: 347 RPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLL-TGARPL---HGDIQQTQREVTLKG 402
Query: 291 LKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
+ GK L+ T+ G+DI +V +IQ PR V I R+GR+
Sbjct: 403 FRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRT 448
>pir||E81090 ATP-dependent RNA helicase, probable NMB1368 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226614|gb|AAF41742.1| (AE002485) ATP-dependent RNA
helicase, putative [Neisseria meningitidis MC58]
Length = 462
Score = 71.0 bits (171), Expect = 5e-11
Identities = 75/346 (21%), Positives = 143/346 (40%), Gaps = 35/346 (10%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPP- 62
+L E + +Q +A EG+ ++ A TGSGKT A +LP + + K P
Sbjct: 14 ILSAVSSEGYESPTPIQAQAIPFALEGRDIMASAQTGSGKTAAFLLPTLQKLTKRSEKPG 73
Query: 63 --ISCLYIAPLKALNRDL-------LERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPP 113
L + P + L + + ++W+ + + G + Y + + + P
Sbjct: 74 KGPRALVLTPTRELAAQVEKNALAYAKNMRWFRT-----VSIVGGASFGY-QTRALSKPV 127
Query: 114 HVLITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFI 173
+++ TP L L+ +S + + + +++DE ++D + I D
Sbjct: 128 DLIVATPGRLMDLM--QSGKVDFERLEVLILDEADRMLD-------------MGFIDDIE 172
Query: 174 RIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDK-ELAELLRVDVEVA 232
I + AT + + + D V +K K + R +D+ ++ E L ++
Sbjct: 173 TI-VEATPSDRQTLLFSATWDGAVGKLARKLTKDPEIIEVERVDDQGKIEEQLLYCDDMR 231
Query: 233 ARLRTLWEIVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERK 290
+ R L I+ + ++F +T+ EV+A L G HG + + R
Sbjct: 232 HKNRLLDHILRDANIDQCVIFTSTKAMTEVIADELYEKGFAANCLHGDMPQGWRNRTLMD 291
Query: 291 LKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
L++G+ K L+ T GID+ + VI Y P+Q + R GR+
Sbjct: 292 LRKGRCKILVATDVAARGIDVPTITHVINYDLPKQAEDYVHRIGRT 337
>dbj|BAB10010.1| (AB006697) RNA helicase-like protein [Arabidopsis thaliana]
Length = 827
Score = 70.6 bits (170), Expect = 7e-11
Identities = 88/378 (23%), Positives = 153/378 (40%), Gaps = 41/378 (10%)
Query: 7 KAIKEK-FRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDG------ 59
KAIK+ F + +Q I +GK VL A TG+GKT A +LP + +++K
Sbjct: 372 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 431
Query: 60 -LPPISCLYIAPLKAL-NRDLLERLKWWEAKTGIRIDVRHGDT---TQYRRAKQVRNPPH 114
PPI L + P + L ++ E + I + V G T T+ RR + NP
Sbjct: 432 RQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQT--NPCQ 489
Query: 115 VLITTPETLPALL-TVKSLRPYLKNVRFVVVDEVTELIDN--KRGAQLILNL---KRLSL 168
+L+ TP L + L V+ +V+DE L+D +R + I+ +R +
Sbjct: 490 ILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTF 549
Query: 169 IADFIRIGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVD 228
+ SATV E V +I LK+ ++F E + + +
Sbjct: 550 L-------FSATVPEE--------VRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMI 594
Query: 229 VEVAARLRTLWEIVEKH------KRVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKE 282
+ L ++++H +V++F T ++A L V H +
Sbjct: 595 ASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQS 654
Query: 283 ARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLE 342
R + ++ K L+ + G+D +V V+Q P + I R GR+ + E
Sbjct: 655 YRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKE 714
Query: 343 VSEAYIIATGVEDYLQSL 360
++A E ++ S+
Sbjct: 715 GEGVLLLAPWEEYFMSSV 732
>dbj|BAB05326.1| (AP001512) ATP-dependent DNA helicase [Bacillus halodurans]
Length = 491
Score = 70.6 bits (170), Expect = 7e-11
Identities = 84/344 (24%), Positives = 157/344 (45%), Gaps = 46/344 (13%)
Query: 20 QIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPISCLYIAPLKALNRDLL 79
Q E + + EG V + PTG+GK+ LP + +G+ L I+PL +L D +
Sbjct: 20 QKEVIEALVEGNDVFAMLPTGTGKSICYQLPAR---ITEGVT----LVISPLLSLMEDQV 72
Query: 80 ERLK--WWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETLPALLTVKSLRPYLK 137
++LK W+ + + G + R KQ+ + +L +PE + + K L+
Sbjct: 73 QQLKSNGWKDVAALSSFLSKG--AKERIIKQL-HLYKLLFLSPEMVQHPVVFKRLKQV-- 127
Query: 138 NVRFVVVDEVTELIDNKRGAQLILNLKRLSLIAD------FIRIGLSATVGNEEEVKEWL 191
V + VVDE + ++ G + RLS + + + +AT ++++ L
Sbjct: 128 KVSYFVVDEAHCI--SQWGHDFRPDFLRLSDVKHQLGNPPCLALTATATPAVQQDILTQL 185
Query: 192 GVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVE----VAARLRTLWEIVEKHKR 247
+DE V ++ RP + + VE V +L + I+E+H
Sbjct: 186 SIDEAVT----------IVHSVDRPN-------ISISVEQTPTVKDKLEVIRGIIERHSG 228
Query: 248 V-LVFVNTRQFAEVLAHRLK-TWGKPVEVHHGSLSKEARIEAERKLKEGKVKALICTSSM 305
+++ ++R ++E +A L K V +HG +S E RI +++ G++ + TS+
Sbjct: 229 AGIIYFSSRLWSEQIARELMLNVKKRVAFYHGGMSNEDRILIQQQFMAGELDLICSTSAF 288
Query: 306 ELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKHRLLEVSEAYII 349
+GI+ ++ VI Y P+Q+ +Q GR+ L S AY++
Sbjct: 289 GMGINKQDIRFVIHYHYPQQIASYVQEIGRAGRDGL-ASSAYVL 331
>sp|P35683|IF4A_ORYSA EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (EIF4A)
>gi|542153|pir||S38358 translation initiation factor
eIF-4A - rice >gi|303844|dbj|BAA02152.1| (D12627)
eukaryotic initiation factor 4A [Oryza sativa]
Length = 413
Score = 70.2 bits (169), Expect = 9e-11
Identities = 76/338 (22%), Positives = 146/338 (42%), Gaps = 24/338 (7%)
Query: 4 LLKKAIKEKFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDGLPPI 63
LL+ F + + +Q +G V+ A +G+GKT ++ L +
Sbjct: 52 LLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ-LDYAVVEC 110
Query: 64 SCLYIAPLKALNRDLLERLKWWEAKTGIRIDVRHGDTTQYRRAKQVRNPPHVLITTPETL 123
L +AP + L + + + ++ G+++ G T+ + + + HV++ TP +
Sbjct: 111 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILASGVHVVVGTPGRV 170
Query: 124 PALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADFIRIGLSATVGN 183
+L +SLRP ++ V+DE E++ Q+ L+ I++G+ +
Sbjct: 171 FDMLRRQSLRP--DYIKMFVLDEADEMLSRGFKDQIY---DIFQLLPSKIQVGVFSATMP 225
Query: 184 EEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKELAELLRVDVEVAA---RLRTLWE 240
E + EI + + K + V + ++ L + + V V +L TL +
Sbjct: 226 PEAL-------EITRKFMNKPVRILV-----KRDELTLEGIKQFYVNVEKEEWKLDTLCD 273
Query: 241 IVEKHK--RVLVFVNTRQFAEVLAHRLKTWGKPVEVHHGSLSKEARIEAERKLKEGKVKA 298
+ E + ++FVNTR+ + L +++ V HG + + R R+ + G +
Sbjct: 274 LYETLAITQSVIFVNTRK-VDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 332
Query: 299 LICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRS 336
LI T + GID+ +V VI Y P Q + R GRS
Sbjct: 333 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 370
>gb|AAF48747.1| (AE003506) CG5800 gene product [Drosophila melanogaster]
Length = 805
Score = 70.2 bits (169), Expect = 9e-11
Identities = 95/398 (23%), Positives = 172/398 (42%), Gaps = 43/398 (10%)
Query: 6 KKAIKE-KFRELNRLQIEAFKRISEGKSVLIIAPTGSGKTEAAILPVMNSILKDG---LP 61
+KA+ E KF ++Q ++ +GK VL A TGSGKT A ++PV+ + +
Sbjct: 84 QKALAESKFVHPTQVQRDSIGPALQGKDVLGAAITGSGKTLAFLIPVLEHLFMNKWSRTD 143
Query: 62 PISCLYIAPLKALNRDLLERLKWWEAKTGIRID-----VRHGDTTQYRRAKQVRNPPHVL 116
+ + I+P + L + E LK K G D + G ++ R + + ++L
Sbjct: 144 GVGAIIISPTRELAYQIFETLK----KVGKHHDFSAGLIIGGKNLKFERTRM--DQCNIL 197
Query: 117 ITTPETLPALLTVKSLRPYLKNVRFVVVDEVTELIDNKRGAQLILNLKRLSLIADF--IR 174
I TP L + L + +V+DE +D G Q LN S+I +F +R
Sbjct: 198 ICTPGRLLQHMDENPLFN-TSTMEMLVLDEADRCLD--MGFQKTLN----SIIENFPPVR 250
Query: 175 IGLSATVGNEEEVKEWLGVDEIVKPPLKKRYKFKVLFPRPRPEDKE--------LAELLR 226
L + V++ ++ +K P+ Y P K+ + ELL+
Sbjct: 251 QTLLFSATQTNTVQDLARLN--LKDPVYVGYGGATPREEPSASTKKTPNTAVLAVPELLQ 308
Query: 227 ---VDVEVAARLRTLWEIVEKH--KRVLVFVNTRQFAEVLAH---RLKTWGKPVEVHHGS 278
V + + ++ LW ++ H ++++VFV + + A+ L +L+ G P+ +G+
Sbjct: 309 QSYVVLNLEDKITMLWSFIKNHLKQKIIVFVASCKQAKYLYEIFCKLRP-GSPLLALYGT 367
Query: 279 LSKEARIEAERKLKEGKVKALICTSSMELGIDIGEVDAVIQYMSPRQVNRLIQRAGRSKH 338
L ++ RI + T G+D V+ V+Q P V++ I RAGRS
Sbjct: 368 LHQDRRIAIYEDFLRKSHVVMFSTDVASRGLDFPAVNWVVQLDCPEDVSQYIHRAGRSAR 427
Query: 339 RLLEVSEAYIIATGVEDYLQSLIIAKRAIEGKLERIKP 376
++ E+Y+ S + + I+ + +I P
Sbjct: 428 NKTRGECLLVLTPSEEEYMISALKEQLNIDIRCVQIDP 465
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 320657744
Number of Sequences: 2977
Number of extensions: 13653282
Number of successful extensions: 43983
Number of sequences better than 1.0e-10: 170
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 43475
Number of HSP's gapped (non-prelim): 236
length of query: 912
length of database: 189,106,746
effective HSP length: 60
effective length of query: 852
effective length of database: 153,197,526
effective search space: 130524292152
effective search space used: 130524292152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 169 (70.2 bits)