BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1818 (PAB1818) DE:Hypothetical protein
(694 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75127 hypothetical protein PAB1818 - Pyrococcus abyssi (st... 1373 0.0
pir||G71004 hypothetical protein PH1333 - Pyrococcus horikoshii ... 930 0.0
>pir||A75127 hypothetical protein PAB1818 - Pyrococcus abyssi (strain Orsay)
>gi|5458241|emb|CAB49730.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 694
Score = 1373 bits (3515), Expect = 0.0
Identities = 694/694 (100%), Positives = 694/694 (100%)
Query: 1 MRKTGILLVALILLSLISGISKVSGEVSYSQLSTVGLKLGWGIKFAQRYVVKVEDVDESW 60
MRKTGILLVALILLSLISGISKVSGEVSYSQLSTVGLKLGWGIKFAQRYVVKVEDVDESW
Sbjct: 1 MRKTGILLVALILLSLISGISKVSGEVSYSQLSTVGLKLGWGIKFAQRYVVKVEDVDESW 60
Query: 61 TKVRIRVYENNAPVKTFILGEGKTGYYPDTTNTLFTIKVVGIWKDKEMIYIKLATPLKKL 120
TKVRIRVYENNAPVKTFILGEGKTGYYPDTTNTLFTIKVVGIWKDKEMIYIKLATPLKKL
Sbjct: 61 TKVRIRVYENNAPVKTFILGEGKTGYYPDTTNTLFTIKVVGIWKDKEMIYIKLATPLKKL 120
Query: 121 EEGLVLEEGDSYKFSSPFPSYKIKVTDVPSDSAAEFEITYPNGQTVKREIEVNSALSISY 180
EEGLVLEEGDSYKFSSPFPSYKIKVTDVPSDSAAEFEITYPNGQTVKREIEVNSALSISY
Sbjct: 121 EEGLVLEEGDSYKFSSPFPSYKIKVTDVPSDSAAEFEITYPNGQTVKREIEVNSALSISY 180
Query: 181 KVGELTQSSYIVVKLIKAEKNNKVVVDIYGAKVTFSNPQILKPEKEETGTTKTIQEAIRK 240
KVGELTQSSYIVVKLIKAEKNNKVVVDIYGAKVTFSNPQILKPEKEETGTTKTIQEAIRK
Sbjct: 181 KVGELTQSSYIVVKLIKAEKNNKVVVDIYGAKVTFSNPQILKPEKEETGTTKTIQEAIRK 240
Query: 241 VVYEGILYTGETLKIEYNKTEYGIRLLSVGYYSKFELIDSKGNELEKFSVREGGSYELVK 300
VVYEGILYTGETLKIEYNKTEYGIRLLSVGYYSKFELIDSKGNELEKFSVREGGSYELVK
Sbjct: 241 VVYEGILYTGETLKIEYNKTEYGIRLLSVGYYSKFELIDSKGNELEKFSVREGGSYELVK 300
Query: 301 APFRIEIPPNSIDLLYNRTYIRVFGPLEATYTPIIREANVTVDLDVSEKRLLLGGDELVV 360
APFRIEIPPNSIDLLYNRTYIRVFGPLEATYTPIIREANVTVDLDVSEKRLLLGGDELVV
Sbjct: 301 APFRIEIPPNSIDLLYNRTYIRVFGPLEATYTPIIREANVTVDLDVSEKRLLLGGDELVV 360
Query: 361 FIKVKNRGRGNAFQVKVLAPIPNNFELKSGIGSWTLSTLEPFSEMPVLVYTLKPNKVGEY 420
FIKVKNRGRGNAFQVKVLAPIPNNFELKSGIGSWTLSTLEPFSEMPVLVYTLKPNKVGEY
Sbjct: 361 FIKVKNRGRGNAFQVKVLAPIPNNFELKSGIGSWTLSTLEPFSEMPVLVYTLKPNKVGEY 420
Query: 421 TLGPVIVEYYDEAGKKIIVKSNIIERIVVYGTPKVSLEVKGLTENETWSNYIETKENSTI 480
TLGPVIVEYYDEAGKKIIVKSNIIERIVVYGTPKVSLEVKGLTENETWSNYIETKENSTI
Sbjct: 421 TLGPVIVEYYDEAGKKIIVKSNIIERIVVYGTPKVSLEVKGLTENETWSNYIETKENSTI 480
Query: 481 KLRFKISASKGDGRYEFIKNATLIVDTGDFLDGKEILNLGSLEAGKEKVIDAQYLVLKRG 540
KLRFKISASKGDGRYEFIKNATLIVDTGDFLDGKEILNLGSLEAGKEKVIDAQYLVLKRG
Sbjct: 481 KLRFKISASKGDGRYEFIKNATLIVDTGDFLDGKEILNLGSLEAGKEKVIDAQYLVLKRG 540
Query: 541 VYSLGVTLVYQDPIGNVHKIEYPNLVLINSVPPKVIIKKEKEVIEKWPEPNELPHYIDTV 600
VYSLGVTLVYQDPIGNVHKIEYPNLVLINSVPPKVIIKKEKEVIEKWPEPNELPHYIDTV
Sbjct: 541 VYSLGVTLVYQDPIGNVHKIEYPNLVLINSVPPKVIIKKEKEVIEKWPEPNELPHYIDTV 600
Query: 601 LSTLSNPEPLAEKIANVSSKYLPPKENKEGVIIKVLGALTFIFGALFIVVGYLAMKYKND 660
LSTLSNPEPLAEKIANVSSKYLPPKENKEGVIIKVLGALTFIFGALFIVVGYLAMKYKND
Sbjct: 601 LSTLSNPEPLAEKIANVSSKYLPPKENKEGVIIKVLGALTFIFGALFIVVGYLAMKYKND 660
Query: 661 LETLKAKRRKTRPGGLPKKEEKGKEEGEIKIKEV 694
LETLKAKRRKTRPGGLPKKEEKGKEEGEIKIKEV
Sbjct: 661 LETLKAKRRKTRPGGLPKKEEKGKEEGEIKIKEV 694
>pir||G71004 hypothetical protein PH1333 - Pyrococcus horikoshii
>gi|3257756|dbj|BAA30439.1| (AP000006) 706aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 706
Score = 930 bits (2377), Expect = 0.0
Identities = 454/705 (64%), Positives = 564/705 (79%), Gaps = 21/705 (2%)
Query: 1 MRKTGILLVALILLSLISG--ISKVSGEVSYSQLSTVGLKLGWGIKFAQRYVVKVEDVDE 58
MRK ILL L+L I I VSGE YS+LSTVGLKLGWG+KFAQ+YVVK+ DVD+
Sbjct: 7 MRKASILLTILLLTGFIMEMFIPVVSGEEKYSELSTVGLKLGWGVKFAQKYVVKLVDVDQ 66
Query: 59 SWTKVRIRVYENNAPVKTFILGEGKTGYYPDTTNTLFTIKVVGIWKDKEMIYIKLATPLK 118
+WT VRI +YEN P FIL EG+ GYYP N +F +KVVGIWKDK ++Y+K+ TPLK
Sbjct: 67 NWTMVRINIYENGNPTAKFILKEGEVGYYPQENNVIFRVKVVGIWKDKGVVYVKIGTPLK 126
Query: 119 KLEEGLVLEEGDSYKFSSPFPSYKIKVTDVPSDSAAEFEITYPNGQTVKREIEVNSALSI 178
L++ +V+ +G SY SPFP YKIKV +VPSDS A EITYP+G +V++ IE +S +SI
Sbjct: 127 LLDDKVVIYKGSSYTIPSPFPRYKIKVIEVPSDSKATLEITYPDGSSVRKVIEKDSPVSI 186
Query: 179 SYKVG-ELTQSSYIVVKLIKAEKNNKVVVDIYGAKVTFSNPQILKPEK----EETGTTKT 233
YKV E QSSYI+++L+ AE+N K+VV++YGAK+TF QI+KPE+ EET T+
Sbjct: 187 PYKVSDEFVQSSYILIELVSAEENKKIVVNVYGAKMTFQGAQIVKPEEKPSEEETKVTEV 246
Query: 234 IQEAIRKVVYEGILYTGETLKIEYNKTEYGIRLLSVGYYSKFELIDSKGNELEKFSVREG 293
QE VY G+LY GETL IEYN T+YG++LLSVGYYS+FEL++SKG +EKFS+REG
Sbjct: 247 SQE-----VYGGLLYVGETLTIEYNNTKYGLKLLSVGYYSRFELLNSKGEVMEKFSIREG 301
Query: 294 GSYELVKAPFRIEIPPNSIDLLYNRTYIRVFGPLEATYTPIIREANVTVDLDVSEKRLLL 353
Y+LVKAPFRIEIPPNS+DL YNRTYIRVFGPL A PIIR+ANVT +L V+EK++LL
Sbjct: 302 NIYQLVKAPFRIEIPPNSVDLTYNRTYIRVFGPLGALALPIIRQANVTAELAVNEKQILL 361
Query: 354 GGDELVVFIKVKNRGRGNAFQVKVLAPIPNNFELKSGIGSWTLSTLEPFSEMPVLVYTLK 413
GDELVVFIKVKN GRGNAFQVKV+AP+PNNF+L+SGIG+WTL+TLE +SEMPVLVYTLK
Sbjct: 362 NGDELVVFIKVKNLGRGNAFQVKVIAPVPNNFQLRSGIGTWTLNTLEAYSEMPVLVYTLK 421
Query: 414 PNKVGEYTLGPVIVEYYDEAGKKIIVKSNIIERIVVYGTPKVSLEVKGLTENETWSNYIE 473
P KVGEY LGPV+VEYY+EAG+K+ VKSN+IE+I+VYGTP++ LE K LT+N+TWSNY++
Sbjct: 422 PTKVGEYKLGPVLVEYYNEAGEKVTVKSNVIEKIIVYGTPEIKLEAKVLTDNKTWSNYVD 481
Query: 474 TKENSTIKLRFKISASKGDGRYEFIKNATLIVDTGDFLDGKEILNLGSLEAGKEKVIDAQ 533
K NSTI+LRFK+S G YEFIKNA++IV+ GDFLDGKE++ +G L AGKEKV++ Q
Sbjct: 482 AKVNSTIRLRFKVSTEGESGEYEFIKNASIIVNMGDFLDGKEVIPIGYLPAGKEKVVEGQ 541
Query: 534 YLVLKRGVYSLGVTLVYQDPIGNVHKIEYPNLVLINSVPPKVIIKKEKEVIEKWPEPNEL 593
YLVLK+G++ +GVTLVYQDP+GN H+I YPNL+LINS+PPKVI+KKE V+EKWPEPNEL
Sbjct: 542 YLVLKKGIHRIGVTLVYQDPLGNWHRISYPNLILINSIPPKVIVKKE--VVEKWPEPNEL 599
Query: 594 PHYIDTVLSTLSNPEPLAEKIANVSSKYLPPKENKEGVIIKVLGALTFIFGALFIVVGYL 653
P YIDTVLSTLSNP PLAEKI NVSSKY+ ++N KVLG +T I G I GY+
Sbjct: 600 PGYIDTVLSTLSNPTPLAEKIVNVSSKYVKQEQNTGISATKVLGVITIILGVALIGTGYM 659
Query: 654 AMKYKNDLETLKAKRRKTRPGGLPKKEEK-------GKEEGEIKI 691
A+KY+NDLE LKAK++K+RPGGLPKKEE+ ++EGEI++
Sbjct: 660 AVKYRNDLEALKAKKKKSRPGGLPKKEEEQITEQKSEEKEGEIEL 704
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.137 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264857728
Number of Sequences: 2977
Number of extensions: 12074922
Number of successful extensions: 23244
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23238
Number of HSP's gapped (non-prelim): 3
length of query: 694
length of database: 189,106,746
effective HSP length: 61
effective length of query: 633
effective length of database: 152,599,039
effective search space: 96595191687
effective search space used: 96595191687
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 168 (69.9 bits)