BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1819 (PAB1819) DE:Hypothetical protein
         (690 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75126 hypothetical protein PAB1819 - Pyrococcus abyssi (st...  1386  0.0
pir||H71004 hypothetical protein PH1334 - Pyrococcus horikoshii ...   920  0.0

>pir||H75126 hypothetical protein PAB1819 - Pyrococcus abyssi (strain Orsay)
           >gi|5458240|emb|CAB49729.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 690
           
 Score = 1386 bits (3548), Expect = 0.0
 Identities = 690/690 (100%), Positives = 690/690 (100%)

Query: 1   MRKVLGFIIVLVLILTPVSAVSMLDYSVSIVKNYKDVTRTRDLSLIVMALSLAFNRTDEL 60
           MRKVLGFIIVLVLILTPVSAVSMLDYSVSIVKNYKDVTRTRDLSLIVMALSLAFNRTDEL
Sbjct: 1   MRKVLGFIIVLVLILTPVSAVSMLDYSVSIVKNYKDVTRTRDLSLIVMALSLAFNRTDEL 60

Query: 61  SEYEIWHFTEKLISWQNDDGGWGYFYGSTSSVPDTGFALIALSKARKVAWSDPKREEMIR 120
           SEYEIWHFTEKLISWQNDDGGWGYFYGSTSSVPDTGFALIALSKARKVAWSDPKREEMIR
Sbjct: 61  SEYEIWHFTEKLISWQNDDGGWGYFYGSTSSVPDTGFALIALSKARKVAWSDPKREEMIR 120

Query: 121 SAIVKGVIYLERSFNGNGWGYLKGMENDYRSTLLASAALVMAGYDYDYVKASYEIIKDKM 180
           SAIVKGVIYLERSFNGNGWGYLKGMENDYRSTLLASAALVMAGYDYDYVKASYEIIKDKM
Sbjct: 121 SAIVKGVIYLERSFNGNGWGYLKGMENDYRSTLLASAALVMAGYDYDYVKASYEIIKDKM 180

Query: 181 PDDPFFLYLWIVVTKNVTGIVPKNAIEKLESIKGSEDKIAAASYALLDIEGLTFQTALLL 240
           PDDPFFLYLWIVVTKNVTGIVPKNAIEKLESIKGSEDKIAAASYALLDIEGLTFQTALLL
Sbjct: 181 PDDPFFLYLWIVVTKNVTGIVPKNAIEKLESIKGSEDKIAAASYALLDIEGLTFQTALLL 240

Query: 241 SESEKFQKNWSKWEYPIYSTMAFSLISEKVIEAGEDKLLKLCSILPELQNEDGGWSLYKG 300
           SESEKFQKNWSKWEYPIYSTMAFSLISEKVIEAGEDKLLKLCSILPELQNEDGGWSLYKG
Sbjct: 241 SESEKFQKNWSKWEYPIYSTMAFSLISEKVIEAGEDKLLKLCSILPELQNEDGGWSLYKG 300

Query: 301 YPSDVVVTYYVLKALEICNPRSEAAIKALEFMREISKRYENEIMRDHYLRNNYLYSILAL 360
           YPSDVVVTYYVLKALEICNPRSEAAIKALEFMREISKRYENEIMRDHYLRNNYLYSILAL
Sbjct: 301 YPSDVVVTYYVLKALEICNPRSEAAIKALEFMREISKRYENEIMRDHYLRNNYLYSILAL 360

Query: 361 AEYNALTEEEKEKAIEIIESSFWGNNLGKQPKTVALAIRTLVALGISPNDKIIKENLEWL 420
           AEYNALTEEEKEKAIEIIESSFWGNNLGKQPKTVALAIRTLVALGISPNDKIIKENLEWL
Sbjct: 361 AEYNALTEEEKEKAIEIIESSFWGNNLGKQPKTVALAIRTLVALGISPNDKIIKENLEWL 420

Query: 421 MKKMEHGGWGFVFETSLVEWYFAPTYPETLDVFTSLLPVVGKEKLGKTIEFIKNNPPSVE 480
           MKKMEHGGWGFVFETSLVEWYFAPTYPETLDVFTSLLPVVGKEKLGKTIEFIKNNPPSVE
Sbjct: 421 MKKMEHGGWGFVFETSLVEWYFAPTYPETLDVFTSLLPVVGKEKLGKTIEFIKNNPPSVE 480

Query: 481 WRKLYAYVTLLKIGEVPDWTVEVPEDYSNPLIDAILVEYYTISPEIPKVNVYTVLSELRG 540
           WRKLYAYVTLLKIGEVPDWTVEVPEDYSNPLIDAILVEYYTISPEIPKVNVYTVLSELRG
Sbjct: 481 WRKLYAYVTLLKIGEVPDWTVEVPEDYSNPLIDAILVEYYTISPEIPKVNVYTVLSELRG 540

Query: 541 KEVELRTNDPKLGQIVAESIEGTVNASVKVRISELLAVPDVGDYIFVAPVGRIDMSRYNQ 600
           KEVELRTNDPKLGQIVAESIEGTVNASVKVRISELLAVPDVGDYIFVAPVGRIDMSRYNQ
Sbjct: 541 KEVELRTNDPKLGQIVAESIEGTVNASVKVRISELLAVPDVGDYIFVAPVGRIDMSRYNQ 600

Query: 601 DVKIYLKLGKFTVNGISLDGRGNLVIVPGRNREGALLFVLYYGKNVEEIAKLALQPSLLK 660
           DVKIYLKLGKFTVNGISLDGRGNLVIVPGRNREGALLFVLYYGKNVEEIAKLALQPSLLK
Sbjct: 601 DVKIYLKLGKFTVNGISLDGRGNLVIVPGRNREGALLFVLYYGKNVEEIAKLALQPSLLK 660

Query: 661 YFHGKAVIIKWNDVNKDGEVEVDELTVKFL 690
           YFHGKAVIIKWNDVNKDGEVEVDELTVKFL
Sbjct: 661 YFHGKAVIIKWNDVNKDGEVEVDELTVKFL 690


>pir||H71004 hypothetical protein PH1334 - Pyrococcus horikoshii
           >gi|3257757|dbj|BAA30440.1| (AP000006) 691aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 691
           
 Score =  920 bits (2353), Expect = 0.0
 Identities = 433/691 (62%), Positives = 554/691 (79%), Gaps = 1/691 (0%)

Query: 1   MRKVLGFIIVLVLILTPVSAVSMLDYSVSIVKNYKDVTRTRDLSLIVMALSLAFNRTDEL 60
           MR  +  II + LI  PVSAVSMLDYS +IVK+++D+++T DLSLIVMALSLA NRT+ L
Sbjct: 1   MRGSIAIIITIALITAPVSAVSMLDYSTNIVKSFRDISKTEDLSLIVMALSLALNRTENL 60

Query: 61  SEYEIWHFTEKLISWQNDDGGWGYFYGSTSSVPDTGFALIALSKARKVAWSDPKREEMIR 120
           +E ++W FT +LI+WQN+DGGWGYF+GS SSVPDT FALIALSKAR V   +  R   I 
Sbjct: 61  NEDDVWKFTNELINWQNEDGGWGYFFGSISSVPDTSFALIALSKARGVIGGNASRRVKIE 120

Query: 121 SAIVKGVIYLERSFNGNGWGYLKGMENDYRSTLLASAALVMAGYDYDYVKASYEIIKDKM 180
           ++IVKGVIYLER+FNGNGWGYLKGM  DYRSTLLASAALVM G D DYV+ +Y  IK K+
Sbjct: 121 NSIVKGVIYLERTFNGNGWGYLKGMPTDYRSTLLASAALVMLGKDRDYVRDAYRTIKSKL 180

Query: 181 PDDPFFLYLWIVVTKNVTGIVPKNAIEKLESIKGSEDKIAAASYALLDIEGLTFQTALLL 240
           P+DPF LYLW +VTKN+TG VP + IEKL+     E ++AAA+Y+LL++EGLTF+TAL+L
Sbjct: 181 PNDPFSLYLWAIVTKNITGEVPSSVIEKLKEFHRDEGELAAATYSLLELEGLTFETALML 240

Query: 241 SESEKFQKNWSKWEYPIYSTMAFSLISEKVIEAGEDKLLKLCSILPELQNEDGGWSLYKG 300
           SE E ++  W+   YPIYSTMAFS++SEK+I+AGEDKLLKLCSILPELQNEDGGW LYK 
Sbjct: 241 SELEDYRSEWTNMYYPIYSTMAFSIVSEKIIKAGEDKLLKLCSILPELQNEDGGWGLYKD 300

Query: 301 YPSDVVVTYYVLKALEICNPRSEAAIKALEFMREISKRYENEIMRDHYLRNNYLYSILAL 360
             SDV+VTY+VL +L ICNPRS+AA K L FMR   K  E EI  D YLR  YLY++L+L
Sbjct: 301 SYSDVIVTYHVLNSLRICNPRSDAARKGLNFMRNKMKEAEREIRSDKYLRKEYLYALLSL 360

Query: 361 AEYNALTEEEKEKAIEIIESSFWGNNLGKQPKTVALAIRTLVALGISPNDKIIKENLEWL 420
            EYN L++EE+E AI +I SS W N++GKQP  VALAIR L+ LG+  +++ I+E LEW+
Sbjct: 361 IEYNNLSKEERENAISLIMSSKWENSIGKQPNIVALAIRALIGLGVPQSNERIREGLEWV 420

Query: 421 MKKMEHGGWGFVFETSLVEWYFAPTYPETLDVFTSLLPVVGKEKLGKTIEFIKNNPPSVE 480
           M+K   GGWGF+F+T LVEWYFAPTY  T +VF +LLP++GKEKL  TIEF+K N P +E
Sbjct: 421 MEKEVDGGWGFIFKTPLVEWYFAPTYLHTFEVFNALLPILGKEKLKDTIEFLKKNEPDIE 480

Query: 481 WRKLYAYVTLLKIGEVPDWTVEVPED-YSNPLIDAILVEYYTISPEIPKVNVYTVLSELR 539
           W+KLY YVTL+K+GE P+W++ +P D YS+P++DA+L+EYY ISPE+PKVN+YT+LSE +
Sbjct: 481 WQKLYVYVTLMKLGEKPEWSISIPNDYYSSPIVDAMLIEYYAISPEVPKVNIYTILSEFK 540

Query: 540 GKEVELRTNDPKLGQIVAESIEGTVNASVKVRISELLAVPDVGDYIFVAPVGRIDMSRYN 599
             +VE+R+++ KL  IV++++E T+N++ K+RI+ELL++PD G+Y+ + PVGRID+S+YN
Sbjct: 541 NGKVEIRSDNAKLAIIVSKNLEATLNSTTKIRITELLSIPDTGNYVIIGPVGRIDVSKYN 600

Query: 600 QDVKIYLKLGKFTVNGISLDGRGNLVIVPGRNREGALLFVLYYGKNVEEIAKLALQPSLL 659
            DV I LKLGKFTV G+ L G GNLVI+PGRNR+GALL +LY G+N ++IA+L LQP LL
Sbjct: 601 GDVGISLKLGKFTVCGVPLTGDGNLVIIPGRNRKGALLLILYRGRNTDKIAELILQPKLL 660

Query: 660 KYFHGKAVIIKWNDVNKDGEVEVDELTVKFL 690
           KYFHGKAVI +W D N++G VE DEL VKFL
Sbjct: 661 KYFHGKAVIAEWKDRNRNGRVESDELMVKFL 691


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.137    0.400 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260656477
Number of Sequences: 2977
Number of extensions: 11295508
Number of successful extensions: 30092
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30079
Number of HSP's gapped (non-prelim): 2
length of query: 690
length of database: 189,106,746
effective HSP length: 58
effective length of query: 632
effective length of database: 154,394,500
effective search space: 97577324000
effective search space used: 97577324000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 168 (69.9 bits)