BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1821 (PAB1821) DE:Hypothetical protein
         (210 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75126 hypothetical protein PAB1821 - Pyrococcus abyssi (st...   418  e-116
pir||C71005 hypothetical protein PH1337 - Pyrococcus horikoshii ...   289  2e-77

>pir||F75126 hypothetical protein PAB1821 - Pyrococcus abyssi (strain Orsay)
           >gi|5458238|emb|CAB49727.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 210
           
 Score =  418 bits (1063), Expect = e-116
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MDCPTSMTSTRVRRVRVKDSIEVALELNEKSVYSHIAHESAEDIKRIISSMDAERAKLRG 60
           MDCPTSMTSTRVRRVRVKDSIEVALELNEKSVYSHIAHESAEDIKRIISSMDAERAKLRG
Sbjct: 1   MDCPTSMTSTRVRRVRVKDSIEVALELNEKSVYSHIAHESAEDIKRIISSMDAERAKLRG 60

Query: 61  EVVYHQDDWDALIRERIRKGKRHTAFDFYNPLLLDIWEKKVKEAKKALKFIKYSIGIVTL 120
           EVVYHQDDWDALIRERIRKGKRHTAFDFYNPLLLDIWEKKVKEAKKALKFIKYSIGIVTL
Sbjct: 61  EVVYHQDDWDALIRERIRKGKRHTAFDFYNPLLLDIWEKKVKEAKKALKFIKYSIGIVTL 120

Query: 121 FIGATIVITMVSGYPAILLGLGIAPILLFIVDYSKEKADLAYYELVQFFIHELKGIIERF 180
           FIGATIVITMVSGYPAILLGLGIAPILLFIVDYSKEKADLAYYELVQFFIHELKGIIERF
Sbjct: 121 FIGATIVITMVSGYPAILLGLGIAPILLFIVDYSKEKADLAYYELVQFFIHELKGIIERF 180

Query: 181 QLNSKEYKVKLYNRDYDGVEFDRSGKAIVK 210
           QLNSKEYKVKLYNRDYDGVEFDRSGKAIVK
Sbjct: 181 QLNSKEYKVKLYNRDYDGVEFDRSGKAIVK 210


>pir||C71005 hypothetical protein PH1337 - Pyrococcus horikoshii
           >gi|3257760|dbj|BAA30443.1| (AP000006) 197aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 197
           
 Score =  289 bits (732), Expect = 2e-77
 Identities = 135/196 (68%), Positives = 167/196 (84%)

Query: 15  VRVKDSIEVALELNEKSVYSHIAHESAEDIKRIISSMDAERAKLRGEVVYHQDDWDALIR 74
           ++VKDS+EVALELNEK +YSHIAHESAED+ RIISSMDAERAKLRGEVVYHQDDWD LIR
Sbjct: 1   MKVKDSVEVALELNEKDLYSHIAHESAEDMIRIISSMDAERAKLRGEVVYHQDDWDLLIR 60

Query: 75  ERIRKGKRHTAFDFYNPLLLDIWEKKVKEAKKALKFIKYSIGIVTLFIGATIVITMVSGY 134
           ERIRKGKRHTAFDFYNP+LLDIWE+KVKEAKK+L+ +KY I  +   +  T ++ + +GY
Sbjct: 61  ERIRKGKRHTAFDFYNPILLDIWEEKVKEAKKSLRLLKYFIAGIVGILAVTALLMVYTGY 120

Query: 135 PAILLGLGIAPILLFIVDYSKEKADLAYYELVQFFIHELKGIIERFQLNSKEYKVKLYNR 194
           P I+LGLG+ P+ LF  DY   KADLAYYELVQFFI+ELK II++F+L+  +Y +K+Y+R
Sbjct: 121 PIIILGLGLLPLALFAYDYFHAKADLAYYELVQFFIYELKEIIKKFELDKSKYPIKIYSR 180

Query: 195 DYDGVEFDRSGKAIVK 210
           DY+GVEF + GKA++K
Sbjct: 181 DYNGVEFKKGGKALIK 196


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.140    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71450960
Number of Sequences: 2977
Number of extensions: 2796322
Number of successful extensions: 11920
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11918
Number of HSP's gapped (non-prelim): 2
length of query: 210
length of database: 189,106,746
effective HSP length: 55
effective length of query: 155
effective length of database: 156,189,961
effective search space: 24209443955
effective search space used: 24209443955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)