BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1822 (PAB1822) DE:Hypothetical protein
         (199 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75126 hypothetical protein PAB1822 - Pyrococcus abyssi (st...   398  e-110
pir||D71005 hypothetical protein PH1338 - Pyrococcus horikoshii ...   316  2e-85

>pir||E75126 hypothetical protein PAB1822 - Pyrococcus abyssi (strain Orsay)
           >gi|5458237|emb|CAB49726.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 199
           
 Score =  398 bits (1011), Expect = e-110
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MRRGQISIEFLFLITIFMILLMYSINNTTFTSGPSVDLLATQINIEEKALANAISNTISQ 60
           MRRGQISIEFLFLITIFMILLMYSINNTTFTSGPSVDLLATQINIEEKALANAISNTISQ
Sbjct: 1   MRRGQISIEFLFLITIFMILLMYSINNTTFTSGPSVDLLATQINIEEKALANAISNTISQ 60

Query: 61  VYAQGPGAKATSYVTLAHINNENDIKKAFKLSDPLIIIFYSNGTYVAIVDSSNLTIRTYG 120
           VYAQGPGAKATSYVTLAHINNENDIKKAFKLSDPLIIIFYSNGTYVAIVDSSNLTIRTYG
Sbjct: 61  VYAQGPGAKATSYVTLAHINNENDIKKAFKLSDPLIIIFYSNGTYVAIVDSSNLTIRTYG 120

Query: 121 ASKNAFWSYSLYAKDLLTNYTVFGNRKTVNLDGNNIEIACLEIRPSDLPKEVKIVVEWNP 180
           ASKNAFWSYSLYAKDLLTNYTVFGNRKTVNLDGNNIEIACLEIRPSDLPKEVKIVVEWNP
Sbjct: 121 ASKNAFWSYSLYAKDLLTNYTVFGNRKTVNLDGNNIEIACLEIRPSDLPKEVKIVVEWNP 180

Query: 181 DLKSSWSYSNGEIRVIIGD 199
           DLKSSWSYSNGEIRVIIGD
Sbjct: 181 DLKSSWSYSNGEIRVIIGD 199


>pir||D71005 hypothetical protein PH1338 - Pyrococcus horikoshii
           >gi|3257761|dbj|BAA30444.1| (AP000006) 202aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 202
           
 Score =  316 bits (800), Expect = 2e-85
 Identities = 144/199 (72%), Positives = 180/199 (90%)

Query: 1   MRRGQISIEFLFLITIFMILLMYSINNTTFTSGPSVDLLATQINIEEKALANAISNTISQ 60
           MR+GQISIEFLFLIT+ MI+L+YS+NN TFT GPSVDLLATQINIEEK+LANAISNTISQ
Sbjct: 4   MRKGQISIEFLFLITVLMIMLIYSLNNVTFTRGPSVDLLATQINIEEKSLANAISNTISQ 63

Query: 61  VYAQGPGAKATSYVTLAHINNENDIKKAFKLSDPLIIIFYSNGTYVAIVDSSNLTIRTYG 120
           VY+QGPG KAT+Y+TL ++ NE +I+KAFK+S+P+I++FYSNGTYVAIVD +N +I TYG
Sbjct: 64  VYSQGPGGKATTYITLTYLRNEGNIEKAFKISNPVILVFYSNGTYVAIVDENNASIYTYG 123

Query: 121 ASKNAFWSYSLYAKDLLTNYTVFGNRKTVNLDGNNIEIACLEIRPSDLPKEVKIVVEWNP 180
            +KNAFWSYSLYA+DLL NYTVFGN+  VN DGN  EIACL I+PS++PK++KIVVEWNP
Sbjct: 124 PNKNAFWSYSLYARDLLANYTVFGNKLLVNFDGNKREIACLIIKPSEIPKKLKIVVEWNP 183

Query: 181 DLKSSWSYSNGEIRVIIGD 199
           DL +SWSY++GE++++IG+
Sbjct: 184 DLSTSWSYNSGELKIVIGE 202


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.135    0.382 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73306466
Number of Sequences: 2977
Number of extensions: 2929069
Number of successful extensions: 7293
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7291
Number of HSP's gapped (non-prelim): 2
length of query: 199
length of database: 189,106,746
effective HSP length: 57
effective length of query: 142
effective length of database: 154,992,987
effective search space: 22009004154
effective search space used: 22009004154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)