BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1823 (PAB1823) DE:Hypothetical protein
         (142 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75126 hypothetical protein PAB1823 - Pyrococcus abyssi (st...   279  8e-75
pir||E71005 hypothetical protein PH1339 - Pyrococcus horikoshii ...   183  6e-46

>pir||D75126 hypothetical protein PAB1823 - Pyrococcus abyssi (strain Orsay)
           >gi|5458236|emb|CAB49725.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 142
           
 Score =  279 bits (707), Expect = 8e-75
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MIKLKAQISIDFLIALTLITITAVNLISLGLSQMKDAETFDTSSKLKVFAIDVRDTVAKV 60
           MIKLKAQISIDFLIALTLITITAVNLISLGLSQMKDAETFDTSSKLKVFAIDVRDTVAKV
Sbjct: 1   MIKLKAQISIDFLIALTLITITAVNLISLGLSQMKDAETFDTSSKLKVFAIDVRDTVAKV 60

Query: 61  YSSGRGFKIRKSWPFNLGPGDNITIALQTPGMLNITAFIGGEKYIVIEKLQVPITQNTSV 120
           YSSGRGFKIRKSWPFNLGPGDNITIALQTPGMLNITAFIGGEKYIVIEKLQVPITQNTSV
Sbjct: 61  YSSGRGFKIRKSWPFNLGPGDNITIALQTPGMLNITAFIGGEKYIVIEKLQVPITQNTSV 120

Query: 121 ILQINSPDFWIENDGGSIRVEK 142
           ILQINSPDFWIENDGGSIRVEK
Sbjct: 121 ILQINSPDFWIENDGGSIRVEK 142


>pir||E71005 hypothetical protein PH1339 - Pyrococcus horikoshii
           >gi|3257762|dbj|BAA30445.1| (AP000006) 140aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 140
           
 Score =  183 bits (461), Expect = 6e-46
 Identities = 86/141 (60%), Positives = 117/141 (81%), Gaps = 1/141 (0%)

Query: 1   MIKLKAQISIDFLIALTLITITAVNLISLGLSQMKDAETFDTSSKLKVFAIDVRDTVAKV 60
           M  +++Q+SIDFLIALTL+TITA+NLISLGL+QM++A++FD SSK+KVFAIDVRDTV KV
Sbjct: 1   MSNMRSQVSIDFLIALTLVTITALNLISLGLTQMEEAKSFDLSSKVKVFAIDVRDTVTKV 60

Query: 61  YSSGRGFKIRKSWPFNLGPGDNITIALQTPGMLNITAFIGGEKYIVIEKLQVPITQNTSV 120
           YS G GF ++K+WPF L PGD I ++L+T G++N+T   GG++Y VIE+LQVPI +N+SV
Sbjct: 61  YSCGEGFAVKKTWPFELNPGDEIIVSLETSGIVNVTLITGGKRYTVIERLQVPIAENSSV 120

Query: 121 ILQINSPDFWIENDGGSIRVE 141
           IL     +FWI+ +GG ++VE
Sbjct: 121 ILTTEKRNFWIKFEGG-VKVE 140


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.138    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48722351
Number of Sequences: 2977
Number of extensions: 1809159
Number of successful extensions: 3686
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3684
Number of HSP's gapped (non-prelim): 2
length of query: 142
length of database: 189,106,746
effective HSP length: 55
effective length of query: 87
effective length of database: 156,189,961
effective search space: 13588526607
effective search space used: 13588526607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)