BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1824 (PAB1824) DE:Hypothetical protein
         (148 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75126 hypothetical protein PAB1824 - Pyrococcus abyssi (st...   293  5e-79
pir||F71005 hypothetical protein PH1340 - Pyrococcus horikoshii ...   112  2e-24

>pir||C75126 hypothetical protein PAB1824 - Pyrococcus abyssi (strain Orsay)
           >gi|5458235|emb|CAB49724.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 148
           
 Score =  293 bits (743), Expect = 5e-79
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MTEGVFVSKSRGQTAIEELFILMILVVGAIVIIPNYIENDAKNLAIVNIRDVAKRACDYI 60
           MTEGVFVSKSRGQTAIEELFILMILVVGAIVIIPNYIENDAKNLAIVNIRDVAKRACDYI
Sbjct: 1   MTEGVFVSKSRGQTAIEELFILMILVVGAIVIIPNYIENDAKNLAIVNIRDVAKRACDYI 60

Query: 61  NMGVIVDDPTHEPLNAIIENSTSEKCYLERIEINEGDMNISVRVKVKFPRNISEAVREFM 120
           NMGVIVDDPTHEPLNAIIENSTSEKCYLERIEINEGDMNISVRVKVKFPRNISEAVREFM
Sbjct: 61  NMGVIVDDPTHEPLNAIIENSTSEKCYLERIEINEGDMNISVRVKVKFPRNISEAVREFM 120

Query: 121 IRALEERGFKYNGTLIYNGIGIEVEVEG 148
           IRALEERGFKYNGTLIYNGIGIEVEVEG
Sbjct: 121 IRALEERGFKYNGTLIYNGIGIEVEVEG 148


>pir||F71005 hypothetical protein PH1340 - Pyrococcus horikoshii
           >gi|3257763|dbj|BAA30446.1| (AP000006) 120aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 120
           
 Score =  112 bits (277), Expect = 2e-24
 Identities = 54/119 (45%), Positives = 83/119 (69%), Gaps = 4/119 (3%)

Query: 30  IVIIPNYIENDAKNLAIVNIRDVAKRACDYINMGVIVDDPTHEPLNAIIENSTSEKCYLE 89
           +V+IP Y++NDAK   +V+++DV +  CDY+N+GVI+++  + PLN II +S   +C+L+
Sbjct: 1   MVVIPGYLDNDAKASVVVHVKDVTREGCDYLNLGVIINESKYAPLNGIINSSV--RCFLK 58

Query: 90  RIEINEGDMNISVRVKVKFPRNISEAVREFMIRALEER-GFKY-NGTLIYNGIGIEVEV 146
           RI   E    I+V + V+   N+SEA++EF+I +L ER GF Y NG L Y GI ++VEV
Sbjct: 59  RISFEENKSEINVTIYVESNANVSEALKEFIINSLREREGFSYSNGVLSYRGIKVKVEV 117


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49228199
Number of Sequences: 2977
Number of extensions: 1827170
Number of successful extensions: 4522
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4519
Number of HSP's gapped (non-prelim): 2
length of query: 148
length of database: 189,106,746
effective HSP length: 55
effective length of query: 93
effective length of database: 156,189,961
effective search space: 14525666373
effective search space used: 14525666373
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)