BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1825 (PAB1825) DE:Hypothetical protein
(474 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75126 hypothetical protein PAB1825 - Pyrococcus abyssi (st... 943 0.0
pir||G71005 hypothetical protein PH1341 - Pyrococcus horikoshii ... 593 e-168
>pir||B75126 hypothetical protein PAB1825 - Pyrococcus abyssi (strain Orsay)
>gi|5458234|emb|CAB49723.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 474
Score = 943 bits (2411), Expect = 0.0
Identities = 474/474 (100%), Positives = 474/474 (100%)
Query: 1 MRKGQLLSLDALISLIVVTFILASLVTLSDTVRGEIISIVGLYERSNIAENMLDIIVDSP 60
MRKGQLLSLDALISLIVVTFILASLVTLSDTVRGEIISIVGLYERSNIAENMLDIIVDSP
Sbjct: 1 MRKGQLLSLDALISLIVVTFILASLVTLSDTVRGEIISIVGLYERSNIAENMLDIIVDSP 60
Query: 61 GEPEDWESNVDSVKVPGIGDGFGVVDYNKLKALVENANNSHLLKALEKLSLGRDFLFEVY 120
GEPEDWESNVDSVKVPGIGDGFGVVDYNKLKALVENANNSHLLKALEKLSLGRDFLFEVY
Sbjct: 61 GEPEDWESNVDSVKVPGIGDGFGVVDYNKLKALVENANNSHLLKALEKLSLGRDFLFEVY 120
Query: 121 MSSFNITINGEFPKVYIDNMTFSGPRGGVYFRVSSGPGNNFFTVDYLELIRGETKYVNEE 180
MSSFNITINGEFPKVYIDNMTFSGPRGGVYFRVSSGPGNNFFTVDYLELIRGETKYVNEE
Sbjct: 121 MSSFNITINGEFPKVYIDNMTFSGPRGGVYFRVSSGPGNNFFTVDYLELIRGETKYVNEE 180
Query: 181 VLNLATGSTLKLEEGDKLRFIVLESVTITVRRLEGGGTVFQKSIPENSVIEVTVTGPETS 240
VLNLATGSTLKLEEGDKLRFIVLESVTITVRRLEGGGTVFQKSIPENSVIEVTVTGPETS
Sbjct: 181 VLNLATGSTLKLEEGDKLRFIVLESVTITVRRLEGGGTVFQKSIPENSVIEVTVTGPETS 240
Query: 241 NFQLTFKARNWNVLKFTGNGNVIVTVSAYSNETPEIKFEKTFYTDLLSLGSPTYYFAVIN 300
NFQLTFKARNWNVLKFTGNGNVIVTVSAYSNETPEIKFEKTFYTDLLSLGSPTYYFAVIN
Sbjct: 241 NFQLTFKARNWNVLKFTGNGNVIVTVSAYSNETPEIKFEKTFYTDLLSLGSPTYYFAVIN 300
Query: 301 GSLVLNRSIIKNSMNNSEWIEPVQRIITVERFEYNLSKEPSTSDPLIYGILNLPLPADGF 360
GSLVLNRSIIKNSMNNSEWIEPVQRIITVERFEYNLSKEPSTSDPLIYGILNLPLPADGF
Sbjct: 301 GSLVLNRSIIKNSMNNSEWIEPVQRIITVERFEYNLSKEPSTSDPLIYGILNLPLPADGF 360
Query: 361 LLISVPSTPGNLTLVAVSGSTVKGIYVYRNSSGYLNAIIVENESISTYTGNSSTISIPIT 420
LLISVPSTPGNLTLVAVSGSTVKGIYVYRNSSGYLNAIIVENESISTYTGNSSTISIPIT
Sbjct: 361 LLISVPSTPGNLTLVAVSGSTVKGIYVYRNSSGYLNAIIVENESISTYTGNSSTISIPIT 420
Query: 421 KVFDDNVNEIIGMWLYYTSWDREDVSIEIVPTIEWAIKPARDLGLIKLTVWDEP 474
KVFDDNVNEIIGMWLYYTSWDREDVSIEIVPTIEWAIKPARDLGLIKLTVWDEP
Sbjct: 421 KVFDDNVNEIIGMWLYYTSWDREDVSIEIVPTIEWAIKPARDLGLIKLTVWDEP 474
>pir||G71005 hypothetical protein PH1341 - Pyrococcus horikoshii
>gi|3257764|dbj|BAA30447.1| (AP000006) 476aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 476
Score = 593 bits (1513), Expect = e-168
Identities = 285/477 (59%), Positives = 369/477 (76%), Gaps = 6/477 (1%)
Query: 1 MRKGQLLSLDALISLIVVTFILASLVTLSDTVRGEIISIVGLYERSNIAENMLDIIVDSP 60
MR+GQLLS+DAL+SL+V+ F+LASL+ +S +RGE++S V + RSNIAENM D++++SP
Sbjct: 1 MRRGQLLSIDALLSLVVMAFLLASLINVSSNLRGEVVSAVNWFSRSNIAENMADVLLESP 60
Query: 61 GEPEDWESNVDSVKVPGIGDGFGVVDYNKLKALVENANNSHLLKALEKLSLGRDFLFEVY 120
GEPE+W NV+S V G+ G+VDY KLK LV+N NN +L +L LSL +DFL E Y
Sbjct: 61 GEPENWNENVNSTNVVGLVSSPGIVDYEKLKTLVKNINNPRILSSLYNLSLKKDFLIEFY 120
Query: 121 MSSFNITINGEFPKVYIDNMTFSGPRG---GVYFRVSSGPGNNFFTVDYLELIRGETKYV 177
+S N+++ G+FPKVYIDNMTFS P G GV F +SS GN F V YLEL+R KY+
Sbjct: 121 LSLVNVSVYGQFPKVYIDNMTFSNPSGKPPGVEFTISS-KGNRAFEVTYLELVREGVKYI 179
Query: 178 NEEVLNLATGSTLKLEEGDKLRFIVLESVTITVRRLEGGGTVFQKSIPENSVIEVTVTGP 237
NEEVL+L TG+ L LE+GD+L+FI+ E VT+TV+R GGGTVFQK IP +V+E+ VTGP
Sbjct: 180 NEEVLDLTTGANLNLEDGDRLKFILAEDVTLTVKRASGGGTVFQKQIPAGAVVEILVTGP 239
Query: 238 ETSNFQLTFKARNWNVLKFTGNGNVIVTVSAYSNETPEIKFEKTFYTDLLSLGSPTYYFA 297
E SNF+LTF+ +WNV KFTG GNV+VTVS+YSN TPEI KTFYT LL+LG+PTY+FA
Sbjct: 240 EVSNFKLTFQG-SWNVFKFTGQGNVVVTVSSYSNTTPEIVANKTFYTTLLTLGTPTYWFA 298
Query: 298 VINGSLVLNRSIIKNSMNNSEWIEPVQRIITVERFEYNLSKEPSTSDPLIYGILNLPLPA 357
VINGSLV ++ I +SMN SEWIEP+ RI+TVERFEYNLSK PS DPLIYG+L+ PLP+
Sbjct: 299 VINGSLVTDKDTILSSMNRSEWIEPIYRIVTVERFEYNLSKGPSGEDPLIYGVLSQPLPS 358
Query: 358 DGFLLISVPSTPGNLTLVAVSGSTVKGIYVYR-NSSGYLNAIIVENESISTYTGNSSTIS 416
+ FL++S P+TPGN+T V VSG V+G+ VYR S+ L AII+E+ Y GN+S+IS
Sbjct: 359 EAFLMVSAPNTPGNVTFVTVSGPKVRGVLVYREESNDILRAIIIEDNKTILYRGNTSSIS 418
Query: 417 IPITKVFDDNVNEIIGMWLYYTSWDREDVSIEIVPTIEWAIKPARDLGLIKLTVWDE 473
IP+ K+FD N IIGMWLY T+W+R++V+I I+P+I+W IKP +DL L+KL VWD+
Sbjct: 419 IPLDKIFDSYENGIIGMWLYSTTWNRQNVNITIIPSIKWVIKPMKDLALVKLVVWDD 475
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183417130
Number of Sequences: 2977
Number of extensions: 8260155
Number of successful extensions: 21249
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21244
Number of HSP's gapped (non-prelim): 2
length of query: 474
length of database: 189,106,746
effective HSP length: 58
effective length of query: 416
effective length of database: 154,394,500
effective search space: 64228112000
effective search space used: 64228112000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 167 (69.5 bits)