BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1826 (PAB1826) DE:Hypothetical protein
         (686 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75126 hypothetical protein PAB1826 - Pyrococcus abyssi (st...  1405  0.0
pir||H71005 hypothetical protein PH1342 - Pyrococcus horikoshii ...  1030  0.0

>pir||A75126 hypothetical protein PAB1826 - Pyrococcus abyssi (strain Orsay)
           >gi|5458233|emb|CAB49722.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 686
           
 Score = 1405 bits (3598), Expect = 0.0
 Identities = 686/686 (100%), Positives = 686/686 (100%)

Query: 1   MRRGFIFTLDALLSLILVVTVLASVIMVQSRVSQVYVTSLRSQSKYIAEDTLRLLRTVPL 60
           MRRGFIFTLDALLSLILVVTVLASVIMVQSRVSQVYVTSLRSQSKYIAEDTLRLLRTVPL
Sbjct: 1   MRRGFIFTLDALLSLILVVTVLASVIMVQSRVSQVYVTSLRSQSKYIAEDTLRLLRTVPL 60

Query: 61  NEIVSPEKIEEWIKDGILDEELVNPRMTPLDIVTTYWATQEIYPEKNLRHKAEIILGYIL 120
           NEIVSPEKIEEWIKDGILDEELVNPRMTPLDIVTTYWATQEIYPEKNLRHKAEIILGYIL
Sbjct: 61  NEIVSPEKIEEWIKDGILDEELVNPRMTPLDIVTTYWATQEIYPEKNLRHKAEIILGYIL 120

Query: 121 NKTLPGYYYELMINNYTSPYLRKVGGNYSKALEVSPATLVMSGYAYNQTPRGYIARAYLT 180
           NKTLPGYYYELMINNYTSPYLRKVGGNYSKALEVSPATLVMSGYAYNQTPRGYIARAYLT
Sbjct: 121 NKTLPGYYYELMINNYTSPYLRKVGGNYSKALEVSPATLVMSGYAYNQTPRGYIARAYLT 180

Query: 181 RVTTIREELYGWMRVLADADYYYDRQRPLNKLTITRIISLPGDAEVLEADGKFVSREGEK 240
           RVTTIREELYGWMRVLADADYYYDRQRPLNKLTITRIISLPGDAEVLEADGKFVSREGEK
Sbjct: 181 RVTTIREELYGWMRVLADADYYYDRQRPLNKLTITRIISLPGDAEVLEADGKFVSREGEK 240

Query: 241 VTLYINGNLVDSDYSQLNIQDLSPYLVSGKNNITLVYSNARGDEIGSASGTTMYIKYKTS 300
           VTLYINGNLVDSDYSQLNIQDLSPYLVSGKNNITLVYSNARGDEIGSASGTTMYIKYKTS
Sbjct: 241 VTLYINGNLVDSDYSQLNIQDLSPYLVSGKNNITLVYSNARGDEIGSASGTTMYIKYKTS 300

Query: 301 QPSVEDPGLVKVYDVTSERTGFMYLFELFVPGNITSIHMRFKVHNIGIVRLYYGLGGNIT 360
           QPSVEDPGLVKVYDVTSERTGFMYLFELFVPGNITSIHMRFKVHNIGIVRLYYGLGGNIT
Sbjct: 301 QPSVEDPGLVKVYDVTSERTGFMYLFELFVPGNITSIHMRFKVHNIGIVRLYYGLGGNIT 360

Query: 361 LLLAKKANPDGDAVIEFTNEEISRALSSIGVSYENMSKMVFDFVVGFDAYYYNGDWYYEG 420
           LLLAKKANPDGDAVIEFTNEEISRALSSIGVSYENMSKMVFDFVVGFDAYYYNGDWYYEG
Sbjct: 361 LLLAKKANPDGDAVIEFTNEEISRALSSIGVSYENMSKMVFDFVVGFDAYYYNGDWYYEG 420

Query: 421 GDSYNDQANRRRRVYGYPDSYIRISYKSKILVTRYSIPLSIYFPYGDTRVSYPNNGLRVE 480
           GDSYNDQANRRRRVYGYPDSYIRISYKSKILVTRYSIPLSIYFPYGDTRVSYPNNGLRVE
Sbjct: 421 GDSYNDQANRRRRVYGYPDSYIRISYKSKILVTRYSIPLSIYFPYGDTRVSYPNNGLRVE 480

Query: 481 YSLPPVAEPWYADFWVGYVFEDYTTVQNLYENGNLFYSGPLGRYAIRVAYTRLYNWMMVP 540
           YSLPPVAEPWYADFWVGYVFEDYTTVQNLYENGNLFYSGPLGRYAIRVAYTRLYNWMMVP
Sbjct: 481 YSLPPVAEPWYADFWVGYVFEDYTTVQNLYENGNLFYSGPLGRYAIRVAYTRLYNWMMVP 540

Query: 541 GQTNIFKIKMTNGNSYVRDGETRGIIKYFIQAYAGYGDIFPKFIRDGCGGYNITYYWRGD 600
           GQTNIFKIKMTNGNSYVRDGETRGIIKYFIQAYAGYGDIFPKFIRDGCGGYNITYYWRGD
Sbjct: 541 GQTNIFKIKMTNGNSYVRDGETRGIIKYFIQAYAGYGDIFPKFIRDGCGGYNITYYWRGD 600

Query: 601 SNPQYVLAGEEPYCSVTADDLLAGRSTYAVDDAIIRLFNNLGGNGTRTSPLLVKLPSNVM 660
           SNPQYVLAGEEPYCSVTADDLLAGRSTYAVDDAIIRLFNNLGGNGTRTSPLLVKLPSNVM
Sbjct: 601 SNPQYVLAGEEPYCSVTADDLLAGRSTYAVDDAIIRLFNNLGGNGTRTSPLLVKLPSNVM 660

Query: 661 IDFASMGNIPGLFKPIQITLRVWREG 686
           IDFASMGNIPGLFKPIQITLRVWREG
Sbjct: 661 IDFASMGNIPGLFKPIQITLRVWREG 686


>pir||H71005 hypothetical protein PH1342 - Pyrococcus horikoshii
           >gi|3257765|dbj|BAA30448.1| (AP000006) 699aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 699
           
 Score = 1030 bits (2634), Expect = 0.0
 Identities = 510/707 (72%), Positives = 582/707 (82%), Gaps = 31/707 (4%)

Query: 1   MRRGFIFTLDALLSLILVVTVLASVIMVQSRVSQVYVTSLRSQSKYIAEDTLRLLRTVPL 60
           MRRGFIFTLDALLSLILVVTVLASV+ +++RVSQVY+TS+RSQS+ IA++ L +LRTVPL
Sbjct: 1   MRRGFIFTLDALLSLILVVTVLASVVSIENRVSQVYLTSMRSQSRDIAKEMLMVLRTVPL 60

Query: 61  NEIVSPEKIEEWIKDGILDEELVNPRMTPLDIVTTYWATQEIYPEKNLRHKAEIILGYIL 120
           NEIV PEKIEEW  +GILD +LV+P M+PLDIV TYWATQ IYPEKNLRHKAEIILGYIL
Sbjct: 61  NEIVPPEKIEEWEDNGILDSDLVDPSMSPLDIVATYWATQNIYPEKNLRHKAEIILGYIL 120

Query: 121 NKTLPGYYYELMINNYTSPYLRKVGGNYSKALEVSPATLVMSGYAYNQTPRGYIARAYLT 180
           N+TLPGYYYELMINNYTSPYLRKVG NYSKALEVSPATLVMSGYAYNQTPRGY+ARAYLT
Sbjct: 121 NETLPGYYYELMINNYTSPYLRKVGANYSKALEVSPATLVMSGYAYNQTPRGYMARAYLT 180

Query: 181 RVTTIREELYGWMRVLADADYYYDRQRPLNKLTITRIISLPGDAEVLEADGKFVSREGEK 240
           RVTTIR+ELYGWMRVLA    YY+    LNKLTI R I LP DA ++EADGKFV+R+GE 
Sbjct: 181 RVTTIRKELYGWMRVLAGGYSYYNN---LNKLTIIRKIYLPIDARIMEADGKFVTRQGEY 237

Query: 241 VTLYINGNLVDSDYSQLNIQDLSPYLVSGKNNITLVYSNARG------DEIGSASGTTMY 294
           + LYIN   V  DY Q+NI DL+PYL  G+N I L++S+         DEIGSASGTTMY
Sbjct: 238 LELYINDVRVGGDYGQINIDDLTPYLKPGENIIKLIFSSFSSLFRSPQDEIGSASGTTMY 297

Query: 295 IKYKTSQPSVEDPGLVKVYDVTSERTGFMYLFELFVPGNITSIHMRFKVHNIGIVRLYYG 354
           +KYKT    VEDPG+VK+Y+VTS+ TG MYL ELFVPGNITSI+M+FKV  +  V LYYG
Sbjct: 298 VKYKTQSSEVEDPGIVKIYNVTSKETGIMYLLELFVPGNITSIYMKFKVDGVSYVTLYYG 357

Query: 355 LGGNITLLLAKKANPDGDAVIEFTNEEISRALSS--------IGVSYENMSKMVFDFVVG 406
            GGN+TLLL K      + ++EFT++EI  A++              EN+SKMVFDFV+G
Sbjct: 358 FGGNLTLLLTKTPQ---NGIVEFTDDEIRDAVNMKICGGRDCYDEFKENLSKMVFDFVLG 414

Query: 407 FDAYY--YNGDWYYEGGDSYNDQANRRRRVYGYPDSYIRISYKSKILVTRYSIPLSIYFP 464
           FDAYY    G+W YEG D+ N      R +YGYPDS + I YK +IL+TRYSIP+S+YFP
Sbjct: 415 FDAYYDPERGEWRYEGRDTPNTGT---RVIYGYPDSEVVIKYKPRILITRYSIPISMYFP 471

Query: 465 YGDTRVSYPNNG------LRVEYSLPPVAEPWYADFWVGYVFEDYTTVQNLYENGNLFYS 518
           YGD RVSYP+NG      LRVEY LP +A+PWYADFWVGY F DYTT+QNLYENG LFYS
Sbjct: 472 YGDKRVSYPSNGEFGNTGLRVEYQLPSIADPWYADFWVGYTFVDYTTIQNLYENGKLFYS 531

Query: 519 GPLGRYAIRVAYTRLYNWMMVPGQTNIFKIKMTNGNSYVRDGETRGIIKYFIQAYAGYGD 578
           GPLGRYAIRVAYTR+Y WMMVPGQTN+F+IKMTNG+SYVRDGETRG+IKYFIQAYAGYG+
Sbjct: 532 GPLGRYAIRVAYTRIYPWMMVPGQTNVFEIKMTNGSSYVRDGETRGVIKYFIQAYAGYGN 591

Query: 579 IFPKFIRDGCGGYNITYYWRGDSNPQYVLAGEEPYCSVTADDLLAGRSTYAVDDAIIRLF 638
           IFPKFIR GC GYNITYYW GDSN  YVLAGEEPYC++TADDLL GR+ YAVDDAI+RLF
Sbjct: 592 IFPKFIRTGCKGYNITYYWIGDSNQHYVLAGEEPYCNLTADDLLVGRNIYAVDDAIVRLF 651

Query: 639 NNLGGNGTRTSPLLVKLPSNVMIDFASMGNIPGLFKPIQITLRVWRE 685
           NNLGGNGT+ SPL V+LPSNVMIDFASMGNIPGLF PI+ITLRVWRE
Sbjct: 652 NNLGGNGTKDSPLFVELPSNVMIDFASMGNIPGLFTPIRITLRVWRE 698


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.140    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275724470
Number of Sequences: 2977
Number of extensions: 12779445
Number of successful extensions: 26682
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26669
Number of HSP's gapped (non-prelim): 2
length of query: 686
length of database: 189,106,746
effective HSP length: 56
effective length of query: 630
effective length of database: 155,591,474
effective search space: 98022628620
effective search space used: 98022628620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 168 (69.9 bits)