BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1827 (PAB1827) DE:Hypothetical protein
(804 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75125 hypothetical protein PAB1827 - Pyrococcus abyssi (st... 1658 0.0
pir||A71006 hypothetical protein PH1343 - Pyrococcus horikoshii ... 1093 0.0
>pir||H75125 hypothetical protein PAB1827 - Pyrococcus abyssi (strain Orsay)
>gi|5458232|emb|CAB49721.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 804
Score = 1658 bits (4247), Expect = 0.0
Identities = 804/804 (100%), Positives = 804/804 (100%)
Query: 1 MRRAFILNSAVLILLIPVLLLIATYEDVTSFIVTSQSERIQLKKTTNLVDFLNLDFQRAL 60
MRRAFILNSAVLILLIPVLLLIATYEDVTSFIVTSQSERIQLKKTTNLVDFLNLDFQRAL
Sbjct: 1 MRRAFILNSAVLILLIPVLLLIATYEDVTSFIVTSQSERIQLKKTTNLVDFLNLDFQRAL 60
Query: 61 EISGKRAVVAVVDYISLTGNFISPTYKSNNTIADLIRRGNSPSITGYDPNRIMQGQTIES 120
EISGKRAVVAVVDYISLTGNFISPTYKSNNTIADLIRRGNSPSITGYDPNRIMQGQTIES
Sbjct: 61 EISGKRAVVAVVDYISLTGNFISPTYKSNNTIADLIRRGNSPSITGYDPNRIMQGQTIES 120
Query: 121 WLSNISKLLNKQGYRLSPSIQDIAKKTEIKVTPLDAFRIAIKARIPNITIMDKAGKIVYS 180
WLSNISKLLNKQGYRLSPSIQDIAKKTEIKVTPLDAFRIAIKARIPNITIMDKAGKIVYS
Sbjct: 121 WLSNISKLLNKQGYRLSPSIQDIAKKTEIKVTPLDAFRIAIKARIPNITIMDKAGKIVYS 180
Query: 181 GPIPSDNSYVYSIVDITELEDPLFSAMTGGRYHRSIKACNYALPEFGQRPITFANGSGES 240
GPIPSDNSYVYSIVDITELEDPLFSAMTGGRYHRSIKACNYALPEFGQRPITFANGSGES
Sbjct: 181 GPIPSDNSYVYSIVDITELEDPLFSAMTGGRYHRSIKACNYALPEFGQRPITFANGSGES 240
Query: 241 TEPVILGRYGESLLYNSTHIWDENGNYATNFTINGIRIPTSEIIKNNGDVGVLNFVNIST 300
TEPVILGRYGESLLYNSTHIWDENGNYATNFTINGIRIPTSEIIKNNGDVGVLNFVNIST
Sbjct: 241 TEPVILGRYGESLLYNSTHIWDENGNYATNFTINGIRIPTSEIIKNNGDVGVLNFVNIST 300
Query: 301 FQGYIWCSGLEYRVNITIKNNVGKDLTDYQIPIIISTSKLPANIVNFIFQNTNYTGNTDV 360
FQGYIWCSGLEYRVNITIKNNVGKDLTDYQIPIIISTSKLPANIVNFIFQNTNYTGNTDV
Sbjct: 301 FQGYIWCSGLEYRVNITIKNNVGKDLTDYQIPIIISTSKLPANIVNFIFQNTNYTGNTDV 360
Query: 361 FKNGASIAIYDSNCNRIPFWIEYWDPQNERALIWIRDSIQNGQSKTYSLYFGEGTPTKGN 420
FKNGASIAIYDSNCNRIPFWIEYWDPQNERALIWIRDSIQNGQSKTYSLYFGEGTPTKGN
Sbjct: 361 FKNGASIAIYDSNCNRIPFWIEYWDPQNERALIWIRDSIQNGQSKTYSLYFGEGTPTKGN 420
Query: 421 GNDVFLFFDDFENPTLSQSKWIKVDRRLQISNGELYIPGGDEVFAIRTRNPIDYSGLFAI 480
GNDVFLFFDDFENPTLSQSKWIKVDRRLQISNGELYIPGGDEVFAIRTRNPIDYSGLFAI
Sbjct: 421 GNDVFLFFDDFENPTLSQSKWIKVDRRLQISNGELYIPGGDEVFAIRTRNPIDYSGLFAI 480
Query: 481 RFRMKGRFDGDLDSGIGIEDNEGNIILFTDDSAGGDGLAIHSPWWRDTSEIDGRSDITSY 540
RFRMKGRFDGDLDSGIGIEDNEGNIILFTDDSAGGDGLAIHSPWWRDTSEIDGRSDITSY
Sbjct: 481 RFRMKGRFDGDLDSGIGIEDNEGNIILFTDDSAGGDGLAIHSPWWRDTSEIDGRSDITSY 540
Query: 541 HTYEAIVYNIYSGISNSYIDVKFKDIIDGRSNSDFWWSFTPPLKYVYIVIDSERWQRGAY 600
HTYEAIVYNIYSGISNSYIDVKFKDIIDGRSNSDFWWSFTPPLKYVYIVIDSERWQRGAY
Sbjct: 541 HTYEAIVYNIYSGISNSYIDVKFKDIIDGRSNSDFWWSFTPPLKYVYIVIDSERWQRGAY 600
Query: 601 FDYILVRKYPGNSLEDPDFLGIRLSSSGIEEKPTISEKISSDVHIYDIQPFIDCLLGQRY 660
FDYILVRKYPGNSLEDPDFLGIRLSSSGIEEKPTISEKISSDVHIYDIQPFIDCLLGQRY
Sbjct: 601 FDYILVRKYPGNSLEDPDFLGIRLSSSGIEEKPTISEKISSDVHIYDIQPFIDCLLGQRY 660
Query: 661 FAIRNGWSFFERLEGSNQNHRIYERLANQTQDELGITYHGEHYPIGLVSFMIPHGIYDRK 720
FAIRNGWSFFERLEGSNQNHRIYERLANQTQDELGITYHGEHYPIGLVSFMIPHGIYDRK
Sbjct: 661 FAIRNGWSFFERLEGSNQNHRIYERLANQTQDELGITYHGEHYPIGLVSFMIPHGIYDRK 720
Query: 721 LLNLMTEIQKSPNEEMVSSADYYFLTYYFGNGNKVEGYRVWGISYGVIPEGDLSNIPFFL 780
LLNLMTEIQKSPNEEMVSSADYYFLTYYFGNGNKVEGYRVWGISYGVIPEGDLSNIPFFL
Sbjct: 721 LLNLMTEIQKSPNEEMVSSADYYFLTYYFGNGNKVEGYRVWGISYGVIPEGDLSNIPFFL 780
Query: 781 DPETAKAILGEQGACDLLYGYNCG 804
DPETAKAILGEQGACDLLYGYNCG
Sbjct: 781 DPETAKAILGEQGACDLLYGYNCG 804
>pir||A71006 hypothetical protein PH1343 - Pyrococcus horikoshii
>gi|3257766|dbj|BAA30449.1| (AP000006) 816aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 816
Score = 1093 bits (2796), Expect = 0.0
Identities = 545/822 (66%), Positives = 647/822 (78%), Gaps = 26/822 (3%)
Query: 1 MRRAFILNSAVLILLIPVLLLIATYEDVTSFIVTSQSERIQLKKTTNLVDFLNLDFQRAL 60
MRR FILNSAVL+LLIP+LLL+ATYEDV+SFIV SQSER QL +T +LV FL+L+FQRAL
Sbjct: 1 MRRGFILNSAVLVLLIPLLLLVATYEDVSSFIVKSQSERFQLGRTHDLVTFLDLEFQRAL 60
Query: 61 EISGKRAVVAVVDYISLTGNFISPTYKSNNTIADLIRRGNSPSITGYDPNRIMQGQTIES 120
EISGKRAVV +VDY+SLTGNFI+P Y NNTIADL+R G+SPSI+GYDP RIMQGQT+ +
Sbjct: 61 EISGKRAVVTIVDYVSLTGNFINPNYMVNNTIADLVRTGSSPSISGYDPTRIMQGQTLRN 120
Query: 121 WLSNISKLLNKQGYRLSPSIQDIAKKTEIKVTPLDAFRIAIKARIPNITIMDKAGKIVYS 180
WLSNIS LL QG+ L P Q I K ++KV PLDAFRI IK IPNITI DK+G+IVYS
Sbjct: 121 WLSNISSLLIDQGFILYPDDQTILKSIKLKVAPLDAFRIIIKGFIPNITIRDKSGRIVYS 180
Query: 181 GPIPSDNSYVYSIVDITELEDPLFSAMTGGRYHRSIKACNYALPEFGQRPITFANGSGES 240
GPIPS+ Y YS+V I ++EDP SAMTGGRYHRSI+ C +++PEFGQRPI ANGSGES
Sbjct: 181 GPIPSNGKYAYSVVSIVDMEDPFHSAMTGGRYHRSIRVCKHSIPEFGQRPIILANGSGES 240
Query: 241 TEPVILGRYGESLLYNSTHIWDENGNYATNFTINGIRIPTSEIIKNNGDVGVLNFVNIST 300
+PV+LGRYGE+LLYNSTHI+D+ GNY TN TING+ + TSE+IKN GD+GV+ F NIS
Sbjct: 241 NKPVLLGRYGETLLYNSTHIYDDEGNYITNLTINGVNVSTSEVIKNIGDMGVIVFSNISG 300
Query: 301 FQGYIWCSGLEYRVNITIKNNVGKDLTDYQIPIIISTSKLPANIVNFIFQNTNYTGNTDV 360
Q Y WCS L YRVNIT+ NN+G+DLTDYQIP++IS +KLP+++VN IF+NTN T +D+
Sbjct: 301 -QSYGWCSSLGYRVNITVTNNLGEDLTDYQIPLLISVAKLPSDVVNAIFENTNSTNYSDI 359
Query: 361 FKNGASIAIYDSNCNRIPFWIEYWDPQNERALIWIRDSIQNGQSKTYSLYFGEGTPTKGN 420
FKNGASI IYDS+CN+IPFWIEYWDP N++ALIWIRDSI GQSKTYSLYFGEG PTKGN
Sbjct: 360 FKNGASIEIYDSSCNKIPFWIEYWDPVNKKALIWIRDSIGAGQSKTYSLYFGEGNPTKGN 419
Query: 421 GNDVFLFFDDFENPTLSQSKWIKVDRRLQISNGELYIPGGDEVFAIRTRNPIDYSGLFAI 480
G+ VFLFFDDFE+ T KW V+ I NGELYIPGG+E AIRT++ I+Y+G FA+
Sbjct: 420 GDQVFLFFDDFEDGTW-DDKWYVVEETPSIINGELYIPGGNETLAIRTKSFINYNGGFAV 478
Query: 481 RFRMKGRFDGDLDSGIGIEDNEGNIILFTDDSAGGDGLAI--------HSPWWRDTSEID 532
RFRMKG+ + D D+GIG+ED G I+LFTDD G GLAI + W
Sbjct: 479 RFRMKGKMNADFDAGIGVEDVTGLILLFTDDYYPGQGLAIWWAVSVRNYYLWLLQNFYDY 538
Query: 533 GRSDITSYHTYEAIVYNIYSGISNSYIDVKFKDIID-------GRSNSDFWWSFTPPLKY 585
GR DIT+YHTYEAI+ I +GI S +V FKD++D GR N++ + F P +Y
Sbjct: 539 GREDITTYHTYEAII--IPAGIFRS--EVTFKDLMDASGNLITGRDNTNNYLIFFFPPRY 594
Query: 586 VYIVIDSERWQRGAYFDYILVRKYP---GNSLEDP-DFLGIRLSSSGIEEKPTISEKISS 641
+Y+VIDS RGAYFDY+ +RKYP G+ L+D F GI L++ +EEKP I K S
Sbjct: 595 LYLVIDSGSKVRGAYFDYVFIRKYPEANGDLLDDSMGFSGIALNAGDVEEKPFIPTKKSP 654
Query: 642 DVHIYDIQPFIDCLLGQRYFAIRNGWSFFERLEGSNQNHRIYERLANQTQDELGITYHGE 701
YDIQP IDCLL QRYFAI++GWSFFERLEGSN+NH +YER+AN+TQDELGI+Y+G+
Sbjct: 655 GA-AYDIQPLIDCLLDQRYFAIKDGWSFFERLEGSNKNHLVYERMANETQDELGISYNGK 713
Query: 702 HYPIGLVSFMIPHGIYDRKLLNLMTEIQKSPNEEMVSSADYYFLTYYFGNGNKVEGYRVW 761
H+PIGLVSFMIP+ IYDRKL LM EI K+PNEE VSSADYYFLTYYFG GNKVEGYRVW
Sbjct: 714 HFPIGLVSFMIPYEIYDRKLATLMIEIGKNPNEERVSSADYYFLTYYFGGGNKVEGYRVW 773
Query: 762 GISYGVIPEGDLSNIPFFLDPETAKAILGEQGACDLLYGYNC 803
GISYGV EGDLSNIPFFLDP+TAK ILG QG CDLL GYNC
Sbjct: 774 GISYGVTSEGDLSNIPFFLDPQTAKEILGTQGTCDLLVGYNC 815
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329290268
Number of Sequences: 2977
Number of extensions: 15728347
Number of successful extensions: 37648
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37640
Number of HSP's gapped (non-prelim): 2
length of query: 804
length of database: 189,106,746
effective HSP length: 55
effective length of query: 749
effective length of database: 156,189,961
effective search space: 116986280789
effective search space used: 116986280789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 169 (70.2 bits)