BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1827 (PAB1827) DE:Hypothetical protein
         (804 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75125 hypothetical protein PAB1827 - Pyrococcus abyssi (st...  1658  0.0
pir||A71006 hypothetical protein PH1343 - Pyrococcus horikoshii ...  1093  0.0

>pir||H75125 hypothetical protein PAB1827 - Pyrococcus abyssi (strain Orsay)
           >gi|5458232|emb|CAB49721.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 804
           
 Score = 1658 bits (4247), Expect = 0.0
 Identities = 804/804 (100%), Positives = 804/804 (100%)

Query: 1   MRRAFILNSAVLILLIPVLLLIATYEDVTSFIVTSQSERIQLKKTTNLVDFLNLDFQRAL 60
           MRRAFILNSAVLILLIPVLLLIATYEDVTSFIVTSQSERIQLKKTTNLVDFLNLDFQRAL
Sbjct: 1   MRRAFILNSAVLILLIPVLLLIATYEDVTSFIVTSQSERIQLKKTTNLVDFLNLDFQRAL 60

Query: 61  EISGKRAVVAVVDYISLTGNFISPTYKSNNTIADLIRRGNSPSITGYDPNRIMQGQTIES 120
           EISGKRAVVAVVDYISLTGNFISPTYKSNNTIADLIRRGNSPSITGYDPNRIMQGQTIES
Sbjct: 61  EISGKRAVVAVVDYISLTGNFISPTYKSNNTIADLIRRGNSPSITGYDPNRIMQGQTIES 120

Query: 121 WLSNISKLLNKQGYRLSPSIQDIAKKTEIKVTPLDAFRIAIKARIPNITIMDKAGKIVYS 180
           WLSNISKLLNKQGYRLSPSIQDIAKKTEIKVTPLDAFRIAIKARIPNITIMDKAGKIVYS
Sbjct: 121 WLSNISKLLNKQGYRLSPSIQDIAKKTEIKVTPLDAFRIAIKARIPNITIMDKAGKIVYS 180

Query: 181 GPIPSDNSYVYSIVDITELEDPLFSAMTGGRYHRSIKACNYALPEFGQRPITFANGSGES 240
           GPIPSDNSYVYSIVDITELEDPLFSAMTGGRYHRSIKACNYALPEFGQRPITFANGSGES
Sbjct: 181 GPIPSDNSYVYSIVDITELEDPLFSAMTGGRYHRSIKACNYALPEFGQRPITFANGSGES 240

Query: 241 TEPVILGRYGESLLYNSTHIWDENGNYATNFTINGIRIPTSEIIKNNGDVGVLNFVNIST 300
           TEPVILGRYGESLLYNSTHIWDENGNYATNFTINGIRIPTSEIIKNNGDVGVLNFVNIST
Sbjct: 241 TEPVILGRYGESLLYNSTHIWDENGNYATNFTINGIRIPTSEIIKNNGDVGVLNFVNIST 300

Query: 301 FQGYIWCSGLEYRVNITIKNNVGKDLTDYQIPIIISTSKLPANIVNFIFQNTNYTGNTDV 360
           FQGYIWCSGLEYRVNITIKNNVGKDLTDYQIPIIISTSKLPANIVNFIFQNTNYTGNTDV
Sbjct: 301 FQGYIWCSGLEYRVNITIKNNVGKDLTDYQIPIIISTSKLPANIVNFIFQNTNYTGNTDV 360

Query: 361 FKNGASIAIYDSNCNRIPFWIEYWDPQNERALIWIRDSIQNGQSKTYSLYFGEGTPTKGN 420
           FKNGASIAIYDSNCNRIPFWIEYWDPQNERALIWIRDSIQNGQSKTYSLYFGEGTPTKGN
Sbjct: 361 FKNGASIAIYDSNCNRIPFWIEYWDPQNERALIWIRDSIQNGQSKTYSLYFGEGTPTKGN 420

Query: 421 GNDVFLFFDDFENPTLSQSKWIKVDRRLQISNGELYIPGGDEVFAIRTRNPIDYSGLFAI 480
           GNDVFLFFDDFENPTLSQSKWIKVDRRLQISNGELYIPGGDEVFAIRTRNPIDYSGLFAI
Sbjct: 421 GNDVFLFFDDFENPTLSQSKWIKVDRRLQISNGELYIPGGDEVFAIRTRNPIDYSGLFAI 480

Query: 481 RFRMKGRFDGDLDSGIGIEDNEGNIILFTDDSAGGDGLAIHSPWWRDTSEIDGRSDITSY 540
           RFRMKGRFDGDLDSGIGIEDNEGNIILFTDDSAGGDGLAIHSPWWRDTSEIDGRSDITSY
Sbjct: 481 RFRMKGRFDGDLDSGIGIEDNEGNIILFTDDSAGGDGLAIHSPWWRDTSEIDGRSDITSY 540

Query: 541 HTYEAIVYNIYSGISNSYIDVKFKDIIDGRSNSDFWWSFTPPLKYVYIVIDSERWQRGAY 600
           HTYEAIVYNIYSGISNSYIDVKFKDIIDGRSNSDFWWSFTPPLKYVYIVIDSERWQRGAY
Sbjct: 541 HTYEAIVYNIYSGISNSYIDVKFKDIIDGRSNSDFWWSFTPPLKYVYIVIDSERWQRGAY 600

Query: 601 FDYILVRKYPGNSLEDPDFLGIRLSSSGIEEKPTISEKISSDVHIYDIQPFIDCLLGQRY 660
           FDYILVRKYPGNSLEDPDFLGIRLSSSGIEEKPTISEKISSDVHIYDIQPFIDCLLGQRY
Sbjct: 601 FDYILVRKYPGNSLEDPDFLGIRLSSSGIEEKPTISEKISSDVHIYDIQPFIDCLLGQRY 660

Query: 661 FAIRNGWSFFERLEGSNQNHRIYERLANQTQDELGITYHGEHYPIGLVSFMIPHGIYDRK 720
           FAIRNGWSFFERLEGSNQNHRIYERLANQTQDELGITYHGEHYPIGLVSFMIPHGIYDRK
Sbjct: 661 FAIRNGWSFFERLEGSNQNHRIYERLANQTQDELGITYHGEHYPIGLVSFMIPHGIYDRK 720

Query: 721 LLNLMTEIQKSPNEEMVSSADYYFLTYYFGNGNKVEGYRVWGISYGVIPEGDLSNIPFFL 780
           LLNLMTEIQKSPNEEMVSSADYYFLTYYFGNGNKVEGYRVWGISYGVIPEGDLSNIPFFL
Sbjct: 721 LLNLMTEIQKSPNEEMVSSADYYFLTYYFGNGNKVEGYRVWGISYGVIPEGDLSNIPFFL 780

Query: 781 DPETAKAILGEQGACDLLYGYNCG 804
           DPETAKAILGEQGACDLLYGYNCG
Sbjct: 781 DPETAKAILGEQGACDLLYGYNCG 804


>pir||A71006 hypothetical protein PH1343 - Pyrococcus horikoshii
           >gi|3257766|dbj|BAA30449.1| (AP000006) 816aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 816
           
 Score = 1093 bits (2796), Expect = 0.0
 Identities = 545/822 (66%), Positives = 647/822 (78%), Gaps = 26/822 (3%)

Query: 1   MRRAFILNSAVLILLIPVLLLIATYEDVTSFIVTSQSERIQLKKTTNLVDFLNLDFQRAL 60
           MRR FILNSAVL+LLIP+LLL+ATYEDV+SFIV SQSER QL +T +LV FL+L+FQRAL
Sbjct: 1   MRRGFILNSAVLVLLIPLLLLVATYEDVSSFIVKSQSERFQLGRTHDLVTFLDLEFQRAL 60

Query: 61  EISGKRAVVAVVDYISLTGNFISPTYKSNNTIADLIRRGNSPSITGYDPNRIMQGQTIES 120
           EISGKRAVV +VDY+SLTGNFI+P Y  NNTIADL+R G+SPSI+GYDP RIMQGQT+ +
Sbjct: 61  EISGKRAVVTIVDYVSLTGNFINPNYMVNNTIADLVRTGSSPSISGYDPTRIMQGQTLRN 120

Query: 121 WLSNISKLLNKQGYRLSPSIQDIAKKTEIKVTPLDAFRIAIKARIPNITIMDKAGKIVYS 180
           WLSNIS LL  QG+ L P  Q I K  ++KV PLDAFRI IK  IPNITI DK+G+IVYS
Sbjct: 121 WLSNISSLLIDQGFILYPDDQTILKSIKLKVAPLDAFRIIIKGFIPNITIRDKSGRIVYS 180

Query: 181 GPIPSDNSYVYSIVDITELEDPLFSAMTGGRYHRSIKACNYALPEFGQRPITFANGSGES 240
           GPIPS+  Y YS+V I ++EDP  SAMTGGRYHRSI+ C +++PEFGQRPI  ANGSGES
Sbjct: 181 GPIPSNGKYAYSVVSIVDMEDPFHSAMTGGRYHRSIRVCKHSIPEFGQRPIILANGSGES 240

Query: 241 TEPVILGRYGESLLYNSTHIWDENGNYATNFTINGIRIPTSEIIKNNGDVGVLNFVNIST 300
            +PV+LGRYGE+LLYNSTHI+D+ GNY TN TING+ + TSE+IKN GD+GV+ F NIS 
Sbjct: 241 NKPVLLGRYGETLLYNSTHIYDDEGNYITNLTINGVNVSTSEVIKNIGDMGVIVFSNISG 300

Query: 301 FQGYIWCSGLEYRVNITIKNNVGKDLTDYQIPIIISTSKLPANIVNFIFQNTNYTGNTDV 360
            Q Y WCS L YRVNIT+ NN+G+DLTDYQIP++IS +KLP+++VN IF+NTN T  +D+
Sbjct: 301 -QSYGWCSSLGYRVNITVTNNLGEDLTDYQIPLLISVAKLPSDVVNAIFENTNSTNYSDI 359

Query: 361 FKNGASIAIYDSNCNRIPFWIEYWDPQNERALIWIRDSIQNGQSKTYSLYFGEGTPTKGN 420
           FKNGASI IYDS+CN+IPFWIEYWDP N++ALIWIRDSI  GQSKTYSLYFGEG PTKGN
Sbjct: 360 FKNGASIEIYDSSCNKIPFWIEYWDPVNKKALIWIRDSIGAGQSKTYSLYFGEGNPTKGN 419

Query: 421 GNDVFLFFDDFENPTLSQSKWIKVDRRLQISNGELYIPGGDEVFAIRTRNPIDYSGLFAI 480
           G+ VFLFFDDFE+ T    KW  V+    I NGELYIPGG+E  AIRT++ I+Y+G FA+
Sbjct: 420 GDQVFLFFDDFEDGTW-DDKWYVVEETPSIINGELYIPGGNETLAIRTKSFINYNGGFAV 478

Query: 481 RFRMKGRFDGDLDSGIGIEDNEGNIILFTDDSAGGDGLAI--------HSPWWRDTSEID 532
           RFRMKG+ + D D+GIG+ED  G I+LFTDD   G GLAI        +  W        
Sbjct: 479 RFRMKGKMNADFDAGIGVEDVTGLILLFTDDYYPGQGLAIWWAVSVRNYYLWLLQNFYDY 538

Query: 533 GRSDITSYHTYEAIVYNIYSGISNSYIDVKFKDIID-------GRSNSDFWWSFTPPLKY 585
           GR DIT+YHTYEAI+  I +GI  S  +V FKD++D       GR N++ +  F  P +Y
Sbjct: 539 GREDITTYHTYEAII--IPAGIFRS--EVTFKDLMDASGNLITGRDNTNNYLIFFFPPRY 594

Query: 586 VYIVIDSERWQRGAYFDYILVRKYP---GNSLEDP-DFLGIRLSSSGIEEKPTISEKISS 641
           +Y+VIDS    RGAYFDY+ +RKYP   G+ L+D   F GI L++  +EEKP I  K S 
Sbjct: 595 LYLVIDSGSKVRGAYFDYVFIRKYPEANGDLLDDSMGFSGIALNAGDVEEKPFIPTKKSP 654

Query: 642 DVHIYDIQPFIDCLLGQRYFAIRNGWSFFERLEGSNQNHRIYERLANQTQDELGITYHGE 701
               YDIQP IDCLL QRYFAI++GWSFFERLEGSN+NH +YER+AN+TQDELGI+Y+G+
Sbjct: 655 GA-AYDIQPLIDCLLDQRYFAIKDGWSFFERLEGSNKNHLVYERMANETQDELGISYNGK 713

Query: 702 HYPIGLVSFMIPHGIYDRKLLNLMTEIQKSPNEEMVSSADYYFLTYYFGNGNKVEGYRVW 761
           H+PIGLVSFMIP+ IYDRKL  LM EI K+PNEE VSSADYYFLTYYFG GNKVEGYRVW
Sbjct: 714 HFPIGLVSFMIPYEIYDRKLATLMIEIGKNPNEERVSSADYYFLTYYFGGGNKVEGYRVW 773

Query: 762 GISYGVIPEGDLSNIPFFLDPETAKAILGEQGACDLLYGYNC 803
           GISYGV  EGDLSNIPFFLDP+TAK ILG QG CDLL GYNC
Sbjct: 774 GISYGVTSEGDLSNIPFFLDPQTAKEILGTQGTCDLLVGYNC 815


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.140    0.422 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329290268
Number of Sequences: 2977
Number of extensions: 15728347
Number of successful extensions: 37648
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37640
Number of HSP's gapped (non-prelim): 2
length of query: 804
length of database: 189,106,746
effective HSP length: 55
effective length of query: 749
effective length of database: 156,189,961
effective search space: 116986280789
effective search space used: 116986280789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 169 (70.2 bits)