BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1834 (PAB1834) DE:Hypothetical protein
         (433 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75125 hypothetical protein PAB1834 - Pyrococcus abyssi (st...   893  0.0
pir||F71088 hypothetical protein PH0971 - Pyrococcus horikoshii ...   109  6e-23
pir||E71088 hypothetical protein PH0970 - Pyrococcus horikoshii ...    97  5e-19

>pir||A75125 hypothetical protein PAB1834 - Pyrococcus abyssi (strain Orsay)
           >gi|5458225|emb|CAB49714.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 433
           
 Score =  893 bits (2282), Expect = 0.0
 Identities = 433/433 (100%), Positives = 433/433 (100%)

Query: 1   MKKKLEHLAVVGIITLVFLVYILSFSPHHIGNNTNTSLPRNKTVAEQVNETPMETETSNR 60
           MKKKLEHLAVVGIITLVFLVYILSFSPHHIGNNTNTSLPRNKTVAEQVNETPMETETSNR
Sbjct: 1   MKKKLEHLAVVGIITLVFLVYILSFSPHHIGNNTNTSLPRNKTVAEQVNETPMETETSNR 60

Query: 61  PVEVKYPRISVKQGNGYTRVEYVFDEVYWVNVIPNGVVLRSGSGLYFINGKEVKKYDLEY 120
           PVEVKYPRISVKQGNGYTRVEYVFDEVYWVNVIPNGVVLRSGSGLYFINGKEVKKYDLEY
Sbjct: 61  PVEVKYPRISVKQGNGYTRVEYVFDEVYWVNVIPNGVVLRSGSGLYFINGKEVKKYDLEY 120

Query: 121 GNVRGVFQGYLVAVKGFNVVVMNESDVVWEKPLEPDSSVGVGKDFVVIVEPYYDAYHDLN 180
           GNVRGVFQGYLVAVKGFNVVVMNESDVVWEKPLEPDSSVGVGKDFVVIVEPYYDAYHDLN
Sbjct: 121 GNVRGVFQGYLVAVKGFNVVVMNESDVVWEKPLEPDSSVGVGKDFVVIVEPYYDAYHDLN 180

Query: 181 ANVTFYFPGSGEKLKYHFRSGQVPLEYKLLVTGEYAIVGILYPWYEWELVYFKNGRIVWR 240
           ANVTFYFPGSGEKLKYHFRSGQVPLEYKLLVTGEYAIVGILYPWYEWELVYFKNGRIVWR
Sbjct: 181 ANVTFYFPGSGEKLKYHFRSGQVPLEYKLLVTGEYAIVGILYPWYEWELVYFKNGRIVWR 240

Query: 241 EDIGRGCAKGASISEVYIEFELSLDENGYGYTLSDDGRAVNYFNEHNFKGICLNSSRAVG 300
           EDIGRGCAKGASISEVYIEFELSLDENGYGYTLSDDGRAVNYFNEHNFKGICLNSSRAVG
Sbjct: 241 EDIGRGCAKGASISEVYIEFELSLDENGYGYTLSDDGRAVNYFNEHNFKGICLNSSRAVG 300

Query: 301 VEVFDGCIALKMKYLGKEKGIYFYKWGDSNVEDFKFKENFSENTVSSDKYLLALYNDHAS 360
           VEVFDGCIALKMKYLGKEKGIYFYKWGDSNVEDFKFKENFSENTVSSDKYLLALYNDHAS
Sbjct: 301 VEVFDGCIALKMKYLGKEKGIYFYKWGDSNVEDFKFKENFSENTVSSDKYLLALYNDHAS 360

Query: 361 IFDCSGEVLRIAGSYEKAYPLKDDFVLVNETHIYLPFRNLIIKIEGIKIIGSFKNSIVGV 420
           IFDCSGEVLRIAGSYEKAYPLKDDFVLVNETHIYLPFRNLIIKIEGIKIIGSFKNSIVGV
Sbjct: 361 IFDCSGEVLRIAGSYEKAYPLKDDFVLVNETHIYLPFRNLIIKIEGIKIIGSFKNSIVGV 420

Query: 421 QENKVIIINISSA 433
           QENKVIIINISSA
Sbjct: 421 QENKVIIINISSA 433


>pir||F71088 hypothetical protein PH0971 - Pyrococcus horikoshii
           >gi|3257385|dbj|BAA30068.1| (AP000004) 167aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 167
           
 Score =  109 bits (270), Expect = 6e-23
 Identities = 51/114 (44%), Positives = 78/114 (67%), Gaps = 6/114 (5%)

Query: 294 NSSRAVGVEVFDGCIALKMKYLGKEKGIYFYKWGDSNVEDFKFKENFSENTVSSDKYLLA 353
           N S+ +G E+   C+ LKMKY GKEKG+YFYK+   + +DF FK  ++ENT+++ +YLLA
Sbjct: 44  NLSQVLGAEILTKCLVLKMKYRGKEKGLYFYKFEAHSGDDFTFKAEYTENTLANSEYLLA 103

Query: 354 LYNDHASIFDCSGEVLRIAGSYEKAYPLKDDFVLV--NETHIYLPFRNLIIKIE 405
            Y D+ ++F+CSGEVLRI G++ +AY   + F LV   E  +Y+     ++K+E
Sbjct: 104 FYKDYIALFNCSGEVLRIKGTFNEAYLAGEGFALVKYRENEVYI----TLLKVE 153


>pir||E71088 hypothetical protein PH0970 - Pyrococcus horikoshii
           >gi|3257384|dbj|BAA30067.1| (AP000004) 145aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 145
           
 Score = 96.7 bits (237), Expect = 5e-19
 Identities = 54/145 (37%), Positives = 73/145 (50%), Gaps = 11/145 (7%)

Query: 140 VVMNESDVVWEKPLEPDSSVGVGKDFVVIVEPYYDAYHDLNANVTFYFPGSGEKLKYHFR 199
           VV  E  +VW  PL   SSV +GKDF+++  P  D Y     NVT Y P + E  +Y F 
Sbjct: 3   VVDPEGRIVWSIPLRYYSSVALGKDFLIVANPDEDMY---KVNVTIYLPKTNETFQYFFP 59

Query: 200 SGQVPLEYKLLVTGEYAIVGILYPWYEWELVYFKNGRIVWREDIGRGCAKGASISEVYIE 259
             +     K +  G YA+VG+ Y W    L YFK  +++W   +   C       E Y  
Sbjct: 60  LDRPNTIIKAVANGSYAVVGVPYTWM---LYYFKREKLLWEGSLSIECG-----YEDYPY 111

Query: 260 FELSLDENGYGYTLSDDGRAVNYFN 284
           F L L  NG+GY +S DG AV +F+
Sbjct: 112 FTLHLSRNGFGYAISSDGYAVTFFS 136


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.140    0.418 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176513509
Number of Sequences: 2977
Number of extensions: 8312053
Number of successful extensions: 17177
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17172
Number of HSP's gapped (non-prelim): 3
length of query: 433
length of database: 189,106,746
effective HSP length: 54
effective length of query: 379
effective length of database: 156,788,448
effective search space: 59422821792
effective search space used: 59422821792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)