BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1835 (PAB1835) DE:THIAMINE-BINDING PERIPLASMIC PROTEIN
PRECURSOR.
(352 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75124 thiamin-binding periplasmic protein precursor PAB183... 723 0.0
pir||G71006 probable thiamin-binding periplasmic protein precurs... 550 e-156
pir||T35452 probable solute binding lipoprotein - Streptomyces c... 213 3e-54
sp|P31550|TBPA_ECOLI THIAMINE-BINDING PERIPLASMIC PROTEIN PRECUR... 209 3e-53
pir||S40584 hypothetical protein - Escherichia coli >gi|11277493... 209 3e-53
pir||E82063 thiamin ABC transporter, periplasmic thiamin-binding... 201 1e-50
pir||F75541 ABC transporter, periplasmic substrate-binding prote... 197 2e-49
pir||C81245 ABC transporter, periplasmic solute-binding protein ... 196 3e-49
pir||B82024 probable thiamin-binding periplasmic protein NMA0287... 194 2e-48
pir||B71361 probable thiamin ABC transporter, thiamin-binding pe... 181 1e-44
sp|P44984|TBPA_HAEIN THIAMINE-BINDING PERIPLASMIC PROTEIN PRECUR... 166 4e-40
gb|AAG20486.1| (AE005121) Vng2395c [Halobacterium sp. NRC-1] 124 1e-27
gb|AAB95371.1| (U75349) periplasmic-iron-binding protein BitC [B... 99 5e-20
gb|AAG20077.1| (AE005087) thiamin-binding periplasmic protein pr... 99 9e-20
gb|AAB95370.1| (U75349) periplasmic-iron-binding protein BitB pr... 96 8e-19
gb|AAD18094.2| (U75349) periplasmic-iron-binding protein BitA [B... 94 2e-18
pir||F81435 probable iron-uptake ABC transport system periplasmi... 87 2e-16
pir||T46949 probable periplasmic binding-protein of the2-aminoet... 83 3e-15
pir||T45460 ferric iron-binding protein [imported] - Actinobacil... 82 8e-15
sp|P43951|Y131_HAEIN PROTEIN HI0131 PRECURSOR >gi|1074276|pir||E... 80 5e-14
pir||G82428 iron(III) ABC transporter, periplasmic iron-compound... 80 5e-14
pir||S74691 iron transport protein - Synechocystis sp. (strain P... 79 9e-14
pir||A82441 ABC transporter, periplasmic substrate-binding prote... 77 3e-13
pir||T45065 iron binding protein afuA, periplasmic [imported] - ... 76 6e-13
gb|AAB05032.1| (U05042) afuA gene product [Actinobacillus pleuro... 75 2e-12
pir||T10886 iron utilization protein A - Haemophilus influenzae ... 72 1e-11
sp|P35755|HITA_HAEIN IRON-UTILIZATION PERIPLASMIC PROTEIN PRECUR... 71 1e-11
pdb|1MRP| Ferric-Binding Protein From Haemophilus Influenzae >... 71 1e-11
pir||C64048 major ferric iron-binding protein - Haemophilus infl... 71 2e-11
>pir||H75124 thiamin-binding periplasmic protein precursor PAB1835 - Pyrococcus
abyssi (strain Orsay) >gi|5458224|emb|CAB49713.1|
(AJ248285) THIAMINE-BINDING PERIPLASMIC PROTEIN
PRECURSOR. [Pyrococcus abyssi]
Length = 352
Score = 723 bits (1845), Expect = 0.0
Identities = 352/352 (100%), Positives = 352/352 (100%)
Query: 1 MKRMKKAIVPILIVLLALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYN 60
MKRMKKAIVPILIVLLALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYN
Sbjct: 1 MKRMKKAIVPILIVLLALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYN 60
Query: 61 AKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADVIPE 120
AKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADVIPE
Sbjct: 61 AKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADVIPE 120
Query: 121 WIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLTKPEWRGKIIIEDPRTSSPGL 180
WIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLTKPEWRGKIIIEDPRTSSPGL
Sbjct: 121 WIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLTKPEWRGKIIIEDPRTSSPGL 180
Query: 181 AFMLWTIAVYKDKWLEYWAKLRDNEIQIVKGWSAAWGAFSEGEYPVVLSYATSPAATVYY 240
AFMLWTIAVYKDKWLEYWAKLRDNEIQIVKGWSAAWGAFSEGEYPVVLSYATSPAATVYY
Sbjct: 181 AFMLWTIAVYKDKWLEYWAKLRDNEIQIVKGWSAAWGAFSEGEYPVVLSYATSPAATVYY 240
Query: 241 DNKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVN 300
DNKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVN
Sbjct: 241 DNKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVN 300
Query: 301 KNVKLPEVYKYALKVEKPVTIDPKEVQENLNKWLKQWEEVVVQGKNPESIEG 352
KNVKLPEVYKYALKVEKPVTIDPKEVQENLNKWLKQWEEVVVQGKNPESIEG
Sbjct: 301 KNVKLPEVYKYALKVEKPVTIDPKEVQENLNKWLKQWEEVVVQGKNPESIEG 352
>pir||G71006 probable thiamin-binding periplasmic protein precursor - Pyrococcus
horikoshii >gi|3257772|dbj|BAA30455.1| (AP000006) 347aa
long hypothetical thiamin-binding periplasmic protein
precursor [Pyrococcus horikoshii]
Length = 347
Score = 550 bits (1402), Expect = e-156
Identities = 261/347 (75%), Positives = 300/347 (86%), Gaps = 8/347 (2%)
Query: 6 KAIVPILIVLLALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYNAKVNL 65
K I I+++LL GCIGGK E E K LTVYAYDSLEYWLKEVIPEFEKEYN KVNL
Sbjct: 6 KVIAGIVMILLVAGCIGGKGE-----EEKTLTVYAYDSLEYWLKEVIPEFEKEYNVKVNL 60
Query: 66 VLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADVIPEWIIKS 125
VLVGSTGELVNRLILEKDNP+ADVVVGIDNTFLAKA+ A VL+ YKP+N D + W+++
Sbjct: 61 VLVGSTGELVNRLILEKDNPQADVVVGIDNTFLAKALSAGVLDTYKPRNIDELYPWLVEK 120
Query: 126 FDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLW 185
FDP + L PFDYGFLAFNYRTD+VKEPPKSL+DL +W+GKIIIEDPRTSSPGLAFM W
Sbjct: 121 FDPTYHLIPFDYGFLAFNYRTDMVKEPPKSLDDLLNEKWKGKIIIEDPRTSSPGLAFMFW 180
Query: 186 TIAVYKDKWLEYWAKLRDNEIQIVKGWSAAWGAFSEGEYPVVLSYATSPAATVYYDNKTN 245
TIAVYKDKWLEYWAKL+DN +QIVKGWSAAW AFS+GE+PVVLSY TSPAATVYYDNKTN
Sbjct: 181 TIAVYKDKWLEYWAKLKDN-VQIVKGWSAAWEAFSKGEFPVVLSYVTSPAATVYYDNKTN 239
Query: 246 VRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKL 305
VRAI F+EGN+LQIEG GI+KG+KN++LAE+F+EFLIS+KAQEKLPTTQWM+P NKNVKL
Sbjct: 240 VRAIIFREGNYLQIEGVGIIKGSKNRKLAERFVEFLISQKAQEKLPTTQWMFPANKNVKL 299
Query: 306 PEVYKYALKVE--KPVTIDPKEVQENLNKWLKQWEEVVVQGKNPESI 350
PEVYKY KV+ K V +DPK +QEN KW+++W VVV+GKNP+ +
Sbjct: 300 PEVYKYNPKVDFSKAVYLDPKLIQENYEKWIREWTAVVVEGKNPKEV 346
>pir||T35452 probable solute binding lipoprotein - Streptomyces coelicolor
>gi|3319740|emb|CAA19906.1| (AL031035) putative solute
binding lipoprotein [Streptomyces coelicolor A3(2)]
Length = 373
Score = 213 bits (536), Expect = 3e-54
Identities = 116/331 (35%), Positives = 198/331 (59%), Gaps = 25/331 (7%)
Query: 33 NKELTVYAYDSLEYWL--KEVIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVV 90
++ +T+ ++DS W K+VI FEK KV ++ G G+ VN+ IL KDNP+ DV
Sbjct: 48 SRTVTLVSHDS---WAVSKDVIAAFEKNSGYKVKVLEDGDAGQAVNKAILTKDNPQGDVF 104
Query: 91 VGIDNTFLAKAIEADVLEPYKPKNAD-VIPEWIIKSFDPEFRLTPFDYGFLAFNYRTDLV 149
G+DNT L++A++ + + Y+ K +D V+PE+ ++ + R+TP D G + NY
Sbjct: 105 FGVDNTLLSRALDNGLFQSYEAKGSDLVLPEY--RADREKHRVTPVDTGDICVNYDKAYF 162
Query: 150 KE----PPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVYKDK-WLEYWAKLRDN 204
+E PP++L+DL KPE++ ++ E+ +SSPGL F+L T A Y D+ W YW KL+ N
Sbjct: 163 REHGLTPPRTLDDLVKPEYKDLLVTENAGSSSPGLGFLLGTAAKYGDEGWEGYWKKLKSN 222
Query: 205 EIQIVKGWSAAW---------GAFSEGEYPVVLSYATS-PAATVYYDNKTNVRAIEFKEG 254
+++V W A+ G ++G+ P+V+SYA+S P VY D + + +G
Sbjct: 223 GVKVVDSWEQAYNEEFSGSAGGKKAKGDRPLVVSYASSPPVEVVYADPQPDTAPTGVADG 282
Query: 255 N-FLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVY-KYA 312
F Q+E AG++ KN E + ++FL+S+ QE +P ++YPV + ++PEV+ K+
Sbjct: 283 TCFRQVEYAGLLSNAKNPEGGKALLDFLLSKSFQEDMPLNMFVYPVREGAQVPEVFSKFG 342
Query: 313 LKVEKPVTIDPKEVQENLNKWLKQWEEVVVQ 343
+ + P T+DP ++ +N ++W+K W +V++
Sbjct: 343 PRAKDPQTLDPAKIADNRDQWVKSWTSLVLK 373
>sp|P31550|TBPA_ECOLI THIAMINE-BINDING PERIPLASMIC PROTEIN PRECURSOR
>gi|7466932|pir||D64728 thiamin-binding periplasmic
protein precursor - Escherichia coli
>gi|1786255|gb|AAC73179.1| (AE000117) thiamin-binding
periplasmic protein [Escherichia coli K12]
Length = 327
Score = 209 bits (527), Expect = 3e-53
Identities = 117/311 (37%), Positives = 170/311 (54%), Gaps = 12/311 (3%)
Query: 36 LTVYAYDSL--EYWLKEVIPE-FEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVG 92
LTVY YDS ++ V+ + FE + N ++ LV + L+NRL +E N KADVV+G
Sbjct: 22 LTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLG 81
Query: 93 IDNTFLAKAIEADVLEP--YKPKNADVIPEWIIKSFDPEFRLTPFDYGFLAFNYRTDLVK 150
+DN L A + + +V W +F PFDYG+ AF Y + +K
Sbjct: 82 LDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTF------VPFDYGYFAFVYDKNKLK 135
Query: 151 EPPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVYKDKWLEYWAKLRDNEIQIVK 210
PP+SL++L + + ++I +DPRTS+PGL +LW VY D + W KL + + K
Sbjct: 136 NPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTK 195
Query: 211 GWSAAWGAFSEGEYPVVLSYATSPAATVYYDNKTNVRAIEFKEGNFLQIEGAGIVKGTKN 270
GWS A+G F +GE +VLSY TSPA + + K N A F EG++LQ+E A +K
Sbjct: 196 GWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQ 255
Query: 271 KELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEKPVTIDPKEVQENL 330
ELA+KF++F++S Q +PT WMYPV NV LP ++ K + P EV
Sbjct: 256 PELAQKFLQFMVSPAFQNAIPTGNWMYPV-ANVTLPAGFEKLTKPATTLEFTPAEVAAQR 314
Query: 331 NKWLKQWEEVV 341
W+ +W+ V
Sbjct: 315 QAWISEWQRAV 325
>pir||S40584 hypothetical protein - Escherichia coli >gi|11277493|pir||T45293
thiamin-binding protein precursor [imported] -
Escherichia coli >gi|216488|dbj|BAA01339.1| (D10483)
sfuA protein homolog(PIR:A35108) [Escherichia coli]
>gi|497658|gb|AAA18833.1| (U09984) thiamin binding
protein [Escherichia coli]
Length = 323
Score = 209 bits (527), Expect = 3e-53
Identities = 117/311 (37%), Positives = 170/311 (54%), Gaps = 12/311 (3%)
Query: 36 LTVYAYDSL--EYWLKEVIPE-FEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVG 92
LTVY YDS ++ V+ + FE + N ++ LV + L+NRL +E N KADVV+G
Sbjct: 18 LTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLG 77
Query: 93 IDNTFLAKAIEADVLEP--YKPKNADVIPEWIIKSFDPEFRLTPFDYGFLAFNYRTDLVK 150
+DN L A + + +V W +F PFDYG+ AF Y + +K
Sbjct: 78 LDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTF------VPFDYGYFAFVYDKNKLK 131
Query: 151 EPPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVYKDKWLEYWAKLRDNEIQIVK 210
PP+SL++L + + ++I +DPRTS+PGL +LW VY D + W KL + + K
Sbjct: 132 NPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTK 191
Query: 211 GWSAAWGAFSEGEYPVVLSYATSPAATVYYDNKTNVRAIEFKEGNFLQIEGAGIVKGTKN 270
GWS A+G F +GE +VLSY TSPA + + K N A F EG++LQ+E A +K
Sbjct: 192 GWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQ 251
Query: 271 KELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEKPVTIDPKEVQENL 330
ELA+KF++F++S Q +PT WMYPV NV LP ++ K + P EV
Sbjct: 252 PELAQKFLQFMVSPAFQNAIPTGNWMYPV-ANVTLPAGFEKLTKPATTLEFTPAEVAAQR 310
Query: 331 NKWLKQWEEVV 341
W+ +W+ V
Sbjct: 311 QAWISEWQRAV 321
>pir||E82063 thiamin ABC transporter, periplasmic thiamin-binding protein VC2539
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9657123|gb|AAF95680.1| (AE004323) thiamin ABC
transporter, periplasmic thiamin-binding protein [Vibrio
cholerae]
Length = 330
Score = 201 bits (506), Expect = 1e-50
Identities = 111/311 (35%), Positives = 173/311 (54%), Gaps = 12/311 (3%)
Query: 36 LTVYAYDSL--EYWLKEVIPE-FEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVG 92
LTVY YDS E+ I + FE + + V + ++NRL LE N KADVV+G
Sbjct: 25 LTVYTYDSFAAEWGPAPAIEKAFEAQCGCDLQFVALDDGVSILNRLRLEGSNSKADVVLG 84
Query: 93 IDNTFLAKAIEADVLEPYKPKNADV-IPE-WIIKSFDPEFRLTPFDYGFLAFNYRTDLVK 150
+DN + +A + +L + + V +P W +F P+DYG+ AF Y + +
Sbjct: 85 LDNNLIEEAKQTGLLATHSVDTSKVTLPNGWSDNTF------VPYDYGYFAFVYNKEKLA 138
Query: 151 EPPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVYKDKWLEYWAKLRDNEIQIVK 210
PP SL++L + K+I +DPRTS+PG +LW +VY D+ + W +L + + K
Sbjct: 139 NPPTSLKELVEKRDDLKVIYQDPRTSTPGQGLLLWMKSVYGDQAPQAWKQLASKTVTVTK 198
Query: 211 GWSAAWGAFSEGEYPVVLSYATSPAATVYYDNKTNVRAIEFKEGNFLQIEGAGIVKGTKN 270
GWS A+ F GE +VLSY TSPA + +N F EG++LQ+E A VK TKN
Sbjct: 199 GWSEAYSMFLGGEADLVLSYTTSPAYHLIAENDARFATANFSEGHYLQVEVAAKVKSTKN 258
Query: 271 KELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEKPVTIDPKEVQENL 330
ELA+KF++F++S + Q +PT WMYPV V+LP+ + + ++ +EV +
Sbjct: 259 GELADKFLQFILSNEFQSVIPTGNWMYPVTA-VELPKGFDTLAVPTQSLSFSAQEVAQMR 317
Query: 331 NKWLKQWEEVV 341
W+++W++ +
Sbjct: 318 KPWIREWQQAL 328
>pir||F75541 ABC transporter, periplasmic substrate-binding protein,
solute-binding family 1 - Deinococcus radiodurans
(strain R1) >gi|6457935|gb|AAF09847.1|AE001887_7
(AE001887) ABC transporter, periplasmic
substrate-binding protein, solute-binding family 1
[Deinococcus radiodurans]
Length = 343
Score = 197 bits (495), Expect = 2e-49
Identities = 121/339 (35%), Positives = 186/339 (54%), Gaps = 34/339 (10%)
Query: 11 ILIVLLALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYNAKVNLVLVGS 70
+++ L LG + +T LTV +DS + K+++ +FE + AKV V G
Sbjct: 4 LIVAALLLGAAQAQAQTT-------LTVITHDSFDVD-KKLVAQFEAQNKAKVRFVKGGD 55
Query: 71 TGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADVIPEWIIKSFDPEF 130
GEL+NRLIL + P ADVV G+DN+ LA+A + ++L+PY+ +P D
Sbjct: 56 AGELLNRLILTRRAPIADVVYGLDNSLLARAQQMNLLQPYRSPALGKVPAGY--RLDDAG 113
Query: 131 RLTPFDYGFLAFNYRTDLVKEP----PKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWT 186
L DYG++A NY ++ PKSL+DL KPE+ ++ P TSSPGLAF+L T
Sbjct: 114 LLNTVDYGYVALNYDRAYFQKAGLALPKSLDDLKKPEYARLTVVSSPATSSPGLAFLLAT 173
Query: 187 IAVYKD--KWLEYWAKLRDNEIQIVKGWSAAW---GAFSEGEYPVVLSYATSPAATVYY- 240
+ Y + W ++W R +++V+GWS A+ + G+YP+VLSYA+SPAA V+Y
Sbjct: 174 VNHYGEAGAW-QWWKTARAGGLKVVRGWSDAYYKDFTRAGGKYPIVLSYASSPAAEVFYA 232
Query: 241 DN--------KTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPT 292
DN + + +LQ+EG G++KG K LA KF++F++S Q +PT
Sbjct: 233 DNYDPAKLPAQAPTANLLLPGSTWLQLEGVGVLKGAKQPALARKFVDFMLSPAVQADIPT 292
Query: 293 TQWMYPVNKNVKLPEVYKYALK-----VEKPVTIDPKEV 326
W+YP KL V+K+ + V+ VT +P+ +
Sbjct: 293 RMWIYPAVSGTKLDPVFKFTQQPDPAPVKASVTANPQRL 331
>pir||C81245 ABC transporter, periplasmic solute-binding protein NMB0041
[imported] - Neisseria meningitidis (group B strain
MD58) >gi|7225261|gb|AAF40512.1| (AE002362) ABC
transporter, periplasmic solute-binding protein
[Neisseria meningitidis MC58]
Length = 333
Score = 196 bits (493), Expect = 3e-49
Identities = 114/346 (32%), Positives = 193/346 (54%), Gaps = 32/346 (9%)
Query: 13 IVLLALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYNAKVNLVLVGSTG 72
I LL L + + +T+V L V+ SL K +I FE+ +AKV+++ G
Sbjct: 5 IWLLPLLAVSAYLQAQTEVR---LAVHKSFSLP---KGLIARFERANDAKVSIIQAGGAN 58
Query: 73 ELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADV---IPEWIIKSFDPE 129
E++N+LIL + NP AD V G+DN + KA E +L +P++A V +P +
Sbjct: 59 EMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPESAPVAVGLPSALA------ 112
Query: 130 FRLTPFDYGFLAFNYRTDLVKEP----PKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLW 185
DYG+++ NY + P++L+DLT+PE++ +++ P TSSPGL F++
Sbjct: 113 -----VDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSPGLGFLMA 167
Query: 186 TIA-VYKDKWLEYWAKLRDNEIQIVKGWSAAWGA-FSE--GEYPVVLSYATSPAATVYYD 241
I+ + ++ ++WA++R N +++ KGWS A+ FS G YP+V+ YA SPAA VY+
Sbjct: 168 NISGLGEESAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAASPAAEVYFS 227
Query: 242 ----NKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMY 297
++ + K G F Q+EGA ++KG K ELA K +++L S + Q+ +P+ W+Y
Sbjct: 228 KGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPELAAKLVQWLQSREVQQAVPSEMWVY 287
Query: 298 PVNKNVKLPEVYKYALKVEKPVTIDPKEVQENLNKWLKQWEEVVVQ 343
P KN +LP+V+++A +++ N W+ +W V++
Sbjct: 288 PAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK 333
>pir||B82024 probable thiamin-binding periplasmic protein NMA0287 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379048|emb|CAB83594.1| (AL162752) putative
thiamin-binding periplasmic protein [Neisseria
meningitidis Z2491]
Length = 333
Score = 194 bits (487), Expect = 2e-48
Identities = 113/346 (32%), Positives = 193/346 (55%), Gaps = 32/346 (9%)
Query: 13 IVLLALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYNAKVNLVLVGSTG 72
I LL L + + +T+V L V+ SL K +I FE+ +AKV+++ G
Sbjct: 5 IWLLPLLAVSAYLQAQTEVR---LAVHKSFSLP---KGLIARFERANDAKVSIIQAGGAN 58
Query: 73 ELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADV---IPEWIIKSFDPE 129
E++N+LIL + NP AD V G+DN + KA E +L +P++A V +P +
Sbjct: 59 EMLNKLILSRANPIADAVYGLDNANIGKAREMGILAAAQPESAPVAVGLPSALA------ 112
Query: 130 FRLTPFDYGFLAFNYRTDLVKEP----PKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLW 185
DYG+++ NY + P++L+DLT+PE++ +++ P TSSPGL F++
Sbjct: 113 -----VDYGYVSINYDKKWFEGKKLPLPQTLQDLTRPEYKNLLVVPSPATSSPGLGFLMA 167
Query: 186 TIA-VYKDKWLEYWAKLRDNEIQIVKGWSAAWGA-FSE--GEYPVVLSYATSPAATVYYD 241
I+ + ++ ++WA++R N +++ KGWS A+ FS G YP+V+ YA SPAA VY+
Sbjct: 168 NISGLGEEGAFKWWAQMRQNGVKVAKGWSEAYYTDFSHNGGAYPLVVGYAASPAAEVYFS 227
Query: 242 ----NKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMY 297
++ + K G F Q+EGA ++KG K +LA K +++L S + Q+ +P+ W+Y
Sbjct: 228 KGKYSEPPTGNLFLKGGVFRQVEGAAVLKGAKQPKLAAKLVQWLQSREVQQAVPSEMWVY 287
Query: 298 PVNKNVKLPEVYKYALKVEKPVTIDPKEVQENLNKWLKQWEEVVVQ 343
P KN +LP+V+++A +++ N W+ +W V++
Sbjct: 288 PAVKNTRLPDVFRFAQAPTHTTAPAQRDIDANQRGWVSRWIRTVLK 333
>pir||B71361 probable thiamin ABC transporter, thiamin-binding periplasmic
protein - syphilis spirochete >gi|3322409|gb|AAC65133.1|
(AE001199) thiamine ABC transporter, thiamine-binding
periplasmic protein, putative [Treponema pallidum]
Length = 335
Score = 181 bits (455), Expect = 1e-44
Identities = 105/307 (34%), Positives = 160/307 (51%), Gaps = 15/307 (4%)
Query: 27 TETKVENKELTVYAYDSL-EYWLKEVIPEFEKEYNAK----VNLVLVGSTGELVNRLILE 81
+ ++ + L +Y YDS W PE + + AK V V+ ++R I +
Sbjct: 21 SRSRTDAPSLVIYVYDSFASEWGPG--PELARRFYAKTGYSVQYVVFEDVTRAIHRAIRD 78
Query: 82 KDNPK---ADVVVGIDNTFLAKAIEADVLEPYKPKNADVIPEWIIKSFDPEFRLTPFDYG 138
+ P AD+++G+D L A EAD+ PY+P +P DP P+D+G
Sbjct: 79 QHTPSSRGADLIIGVDQYTLPLAREADLFSPYQP----ALPLPHALRIDPHNLAVPYDWG 134
Query: 139 FLAFNYRTDLVKEPPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVYKDKWLEYW 198
++AF + TD P+ L DL P + I + DP T+ G F+ W W +W
Sbjct: 135 YVAFMFNTDAALPEPQRLSDLANPVYAKSIALADPHTNVLGTIFIGWAHTSLGAAWPAFW 194
Query: 199 AKL-RDNEIQIVKGWSAAWGAFSEGEYPVVLSYATSPAATVYYDNKTNVRAIEFKEGNFL 257
L R N + + WSAA+G F+ GE +VLSY TS A +++DN T + + F EG+ +
Sbjct: 195 NTLYRANLLALAPSWSAAYGLFTAGEAALVLSYTTSAAYHLHHDNHTRFKPLLFPEGHPM 254
Query: 258 QIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEK 317
IEG +VK TK+ +A +FI+FL+S +AQE LP TQWMYP N +V LP + +
Sbjct: 255 HIEGISLVKRTKHARVATQFIDFLLSTEAQELLPLTQWMYPANPDVPLPAAFSAVPQPAA 314
Query: 318 PVTIDPK 324
V++ P+
Sbjct: 315 CVSLSPQ 321
>sp|P44984|TBPA_HAEIN THIAMINE-BINDING PERIPLASMIC PROTEIN PRECURSOR
>gi|1074607|pir||C64164 thiamin-binding periplasmic
protein precursor HI1019 - Haemophilus influenzae
(strain Rd KW20) >gi|1574048|gb|AAC22678.1| (U32782)
thiamin ABC transporter, periplasmic-binding protein
(tbpA) [Haemophilus influenzae Rd]
Length = 332
Score = 166 bits (416), Expect = 4e-40
Identities = 108/317 (34%), Positives = 165/317 (51%), Gaps = 15/317 (4%)
Query: 34 KELTVYAYDSL-EYWLK--EVIPEFEKEY-NAKVNLVLVGSTGELVNRLILEKDNPKADV 89
+ + VY+YDS W +V +FEK + +N S G L+NR+ LE KAD+
Sbjct: 24 QSVNVYSYDSFTSEWGAGPKVKQDFEKAHPQCAINFTPFESVGVLLNRVRLEGKKTKADI 83
Query: 90 VVGIDNTFLAKAIEADVLEPYKPK--NADVIPEWIIKSFDPEFRLTPFDYGFLAFNYRTD 147
V+G+DN FL +A + + P D+ +W K+F PFD+G AF Y
Sbjct: 84 VLGLDNFFLEQAEKTGIFAPNNVDLTQLDLPTKWANKTF------LPFDFGNYAFVYDKT 137
Query: 148 LVKEPPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVYK-DKWLEYWAKLRDNEI 206
++ PPKSL++L + + +I +DPRTSS G ++W AVY DK W +L + +
Sbjct: 138 KLQNPPKSLKELVERQDLS-VIYQDPRTSSVGRGLLVWMNAVYPADKIQSAWKELDKHTV 196
Query: 207 QIVKGWSAAWGAFSEGEYPVVLSYATSPAATVYYDNKTNVRAIEFKEGNFLQIEGAGIVK 266
+ KGWS +GAF +GE +VLSY+TSP ++ K N A +F EG+ Q+E A V
Sbjct: 197 TVGKGWSDTYGAFLKGEADLVLSYSTSPLYHQLFEKKDNYAATDFAEGHITQVELAARVA 256
Query: 267 GTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEKPVTIDPKEV 326
N + A+ F+ FLIS AQ+ + T M PV + P ++ + +I+P
Sbjct: 257 NHPN-QCADDFMAFLISPTAQKHIVTANIMLPVIQGEIEPHFDALKVQQKTQTSINPMVN 315
Query: 327 QENLNKWLKQWEEVVVQ 343
E L W+ W+ + +
Sbjct: 316 TEQLKNWISTWQTTLTK 332
>gb|AAG20486.1| (AE005121) Vng2395c [Halobacterium sp. NRC-1]
Length = 352
Score = 124 bits (309), Expect = 1e-27
Identities = 92/343 (26%), Positives = 163/343 (46%), Gaps = 36/343 (10%)
Query: 17 ALGCI--GGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYNAKVNLVLVGSTGEL 74
A GC+ GG + +V + V S WLK ++E ++ V +
Sbjct: 19 AAGCLQMGGNSAETLRVGTYDSFV-GEGSAGRWLKA---QWEADHETTVEFTTPTAG--- 71
Query: 75 VNRLILEKDNP---KADVVVGI-------------DNTFLAKAIEADVLEPYKPKNADVI 118
VN + +K N AD+ VG+ D+T L + ADV + K A I
Sbjct: 72 VNEFVNKKRNGVGIDADLFVGLNTGELVRIDNELGDDTRLFDGLAADVSRSSEIKEALHI 131
Query: 119 PEWIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLTKPEWRGKIIIEDPRTSSP 178
DP R +D G+++ Y +V + P++ E LT + G ++ + + S P
Sbjct: 132 --------DPAGRALTYDTGYISLVYDGTVV-DGPETFEALTTEPYAGTLLTQTAQNSDP 182
Query: 179 GLAFMLWTIAVY-KDKWLEYWAKLRDNEIQIVKGWSAAWGAFSEGEYPVVLSYATSPAAT 237
G AF+LWTI + D +L+YW +L DN+++++ GWS ++ AF+EGE P+V+SY+T
Sbjct: 183 GRAFLLWTIHEFGPDGYLDYWTRLVDNDVRVLNGWSESYTAFTEGERPMVVSYSTDRVIY 242
Query: 238 VYYDNKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMY 297
D+ + R + ++ E T E+A +F+EF++S + Q+ + +
Sbjct: 243 NDPDDLPHHRVGFLNDQGYINPEAVARFADTDTPEVAAEFVEFMLSSERQQGIAERNAQF 302
Query: 298 PVNKNVKLP-EVYKYALKVEKPVTIDPKEVQENLNKWLKQWEE 339
P + LP +V +Y + +PV + E+ ++ +W + W +
Sbjct: 303 PATETASLPADVAEYGYEPPEPVRLTYDELAGSVAEWTETWAQ 345
>gb|AAB95371.1| (U75349) periplasmic-iron-binding protein BitC [Brachyspira
hyodysenteriae]
Length = 339
Score = 99.5 bits (244), Expect = 5e-20
Identities = 94/345 (27%), Positives = 164/345 (47%), Gaps = 18/345 (5%)
Query: 4 MKKAIVPILIVLLALGCIGGKTETETKVEN-KELTVYAYDSLEYWLKEVIPEFEKEYNAK 62
MKK ++ +LL++ + +E+ ++ L +Y LE+ + ++ +F K N
Sbjct: 1 MKKIVLIFTSLLLSVFIFYSCSSSESGAQSGNSLVIYCPHPLEF-INPLVDDF-KAKNPG 58
Query: 63 VNL-VLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADVIPEW 121
+N+ ++ TGEL+ R+ EKDNP D++ G T + D+ E Y N + I E
Sbjct: 59 INVDIIAAGTGELLKRVESEKDNPLGDILWG--GTISMAKPKIDLFESYTSTNEENIAE- 115
Query: 122 IIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPP-KSLEDLTKPEWRGKIIIEDPRTSSPG- 179
I K+ + L N T+L + + EDL PE +GKI DP SS
Sbjct: 116 IYKNTEGALTRCTAVPSILMVN--TNLAGDIKIEGYEDLLNPELKGKIAFADPSASSSSF 173
Query: 180 --LAFMLWTIAVYK-DKWLEYWAKLRDN-EIQIVKGWSAAWGAFSEGEYPVVLSYATSPA 235
L ML+ I +K +Y +KL N + +++ G SA + ++GEY V L++ A
Sbjct: 174 EHLVNMLYAIGKGDPEKGWDYVSKLCANLDGKLLSGSSAVYKGVADGEYTVGLTFEEGGA 233
Query: 236 ATVYYDNKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQW 295
Y + V+ + KEG ++ +G I+K KN E A+KF+++ S AQ+ +
Sbjct: 234 N--YVSAGSPVKLVYMKEGVIIKPDGIYIIKNAKNLENAKKFVDYATSYDAQKTITDKLN 291
Query: 296 MYPVNKNVKLPEVYKYALKVEKPVTIDPKEVQENLNKWLKQWEEV 340
V ++ P ++ +T D V +N WL +++++
Sbjct: 292 RRSVRGDLP-PSAILQSVDTINVITDDEAVVDQNKQNWLNKFKDI 335
>gb|AAG20077.1| (AE005087) thiamin-binding periplasmic protein precursor homolog;
Thb [Halobacterium sp. NRC-1]
Length = 382
Score = 98.7 bits (242), Expect = 9e-20
Identities = 76/302 (25%), Positives = 140/302 (46%), Gaps = 26/302 (8%)
Query: 47 WLKEVIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKA---IE 103
W+K+ + + EY + V+ + R + + AD VG+ LA+A +
Sbjct: 81 WVKDAV---QSEYTVDFDWVVAENGVTEFMRRAQQGVDLGADGYVGVTAADLARADRELS 137
Query: 104 ADVLEPYKPK---NADVIPE--WIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLED 158
A + + N D + + WI D R+ P ++ Y + V + P++L
Sbjct: 138 APLFAAFDTDAVDNTDNVHDRFWI----DGTDRMLPTGASYVTIIY-DETVVDAPETLAA 192
Query: 159 LTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVY-KDKWLEYWAKLRDNEIQIVKGWSAAWG 217
LT E+ I++ +P+ ++ GLAF+LWT+ + +D +LEYW +L DN +Q W+A +
Sbjct: 193 LTTDEYSDGILVPNPQNTATGLAFVLWTVDAFGEDGFLEYWRRLADNGLQTAGSWNATYS 252
Query: 218 AFSEGEYPVVLSYATSPAATVYYDNKTNVRAIEFK-----EGNFLQIEGAGIVKGTKNKE 272
A+S GE P+V+SY+T VY +V + + + + G + N
Sbjct: 253 AYSGGEAPMVMSYSTD---QVYASQDPDVDMARHQVAFPGDSAYTYVSGTTKFESATNPA 309
Query: 273 LAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLP-EVYKYALKVEKPVTIDPKEVQENLN 331
L + F F++S Q + P N LP E+ +Y E P++ + ++++ +
Sbjct: 310 LVDTFASFMLSGDTQRIVAEKNVGIPTVTNASLPAELREYVHVPEAPISHSAETLRQHAD 369
Query: 332 KW 333
+W
Sbjct: 370 EW 371
>gb|AAB95370.1| (U75349) periplasmic-iron-binding protein BitB protein [Brachyspira
hyodysenteriae]
Length = 342
Score = 95.6 bits (234), Expect = 8e-19
Identities = 90/347 (25%), Positives = 158/347 (44%), Gaps = 19/347 (5%)
Query: 4 MKKAIVPILIVLLALG----CIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEY 59
MKK I+ ++ L+L C ++ET++ L +Y LE+ + ++ +F K
Sbjct: 1 MKKIILICSVLFLSLALFYSCSSKESETQSGQAGNSLVIYCPHPLEF-INPLVDDF-KAK 58
Query: 60 NAKVNL-VLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADVI 118
N +N+ ++ GEL+ R+ EKDNP D++ G + +E + E Y N I
Sbjct: 59 NPGINVDIIAAGVGELLKRVESEKDNPLGDILWGGSLNTVKPKVE--LFENYTTTNEASI 116
Query: 119 PEWIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLTKPEWRGKIIIEDPRTSSP 178
+ R T + +K + EDL PE +GKI DP SS
Sbjct: 117 ADAYKNVEGAITRFTAIPSVIMVNTNLAGNIKI--EGYEDLLNPELKGKIAFADPSASSS 174
Query: 179 G---LAFMLWTIAVYK-DKWLEYWAKLRDN-EIQIVKGWSAAWGAFSEGEYPVVLSYATS 233
L ML+ + +K +Y +KL N + +++ G SA + ++GEY V L++
Sbjct: 175 SFEHLVNMLYAMGNGDPEKGWDYISKLCANLDGKLLSGSSAVYKGVADGEYTVGLTFEEG 234
Query: 234 PAATVYYDNKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTT 293
A Y + V+ + KEG ++ +G I+K KN E A+KF+++ S AQ+ +
Sbjct: 235 GAN--YVSAGSPVKLVYMKEGVIIKPDGIYILKNAKNLENAKKFVDYATSYDAQKTINDK 292
Query: 294 QWMYPVNKNVKLPEVYKYALKVEKPVTIDPKEVQENLNKWLKQWEEV 340
V ++ P ++ +T D V +N WL +++++
Sbjct: 293 LNRRSVRNDLP-PSAILQSVDTINVITDDEAVVDQNKQNWLNKFKDI 338
>gb|AAD18094.2| (U75349) periplasmic-iron-binding protein BitA [Brachyspira
hyodysenteriae]
Length = 336
Score = 94.4 bits (231), Expect = 2e-18
Identities = 97/348 (27%), Positives = 166/348 (46%), Gaps = 27/348 (7%)
Query: 4 MKKAIVPILIVL---LALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYN 60
MK I+ +++L L C G ++ L +Y L+ + ++ +F K N
Sbjct: 1 MKNFIIFCMLMLSMTLFYSCSSGDSKNANS-----LVIYCSHPLDL-MNTILDDF-KAKN 53
Query: 61 AKVNL-VLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKN-ADVI 118
+N+ V+ TGEL+ R+ EK NP DV+ G T + + D+ E Y N A+++
Sbjct: 54 PDINVEVVTAGTGELLKRVEAEKMNPLGDVLWG--GTLNSVKSKTDLFENYTSTNEANIL 111
Query: 119 PEWIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPP-KSLEDLTKPEWRGKIIIEDPRTSS 177
E+ K+ + F L N T+L + EDL PE +GKI DP SS
Sbjct: 112 DEF--KNTEGPFTRFSAIPSILMVN--TNLAGNIKIEGYEDLLNPELKGKIAAADPSASS 167
Query: 178 PG---LAFMLWTIAVYK-DKWLEYWAKLRDN-EIQIVKGWSAAWGAFSEGEYPVVLSYAT 232
L ML+ + +K +Y KL N + +++ G SA + ++GEY V L+Y
Sbjct: 168 SAFEHLVNMLYAMGKGDPEKGWDYVQKLCANLDGKLLSGSSAVYKGVADGEYTVGLTYEE 227
Query: 233 SPAATVYYDNKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPT 292
+ Y + + V+ I KEG + +G I+KG KN E A+KFI++ +S AQ L
Sbjct: 228 PGIS--YMSSGSPVKVIYMKEGVISKPDGVYIIKGGKNLENAKKFIDYCVSLDAQNMLVE 285
Query: 293 TQWMYPVNKNVKLPEVYKYALKVEKPVTIDPKEVQENLNKWLKQWEEV 340
+ + + ++ K ++ +T + V+E+ KWL +++++
Sbjct: 286 KLSRRSIRSDAVVTDMVKPMSEIYS-ITDNADVVEESRQKWLDKFKDI 332
>pir||F81435 probable iron-uptake ABC transport system periplasmic iron-binding
protein Cj0175c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967668|emb|CAB72658.1|
(AL139074) putative iron-uptake ABC transport system
periplasmic iron-binding protein [Campylobacter jejuni]
Length = 334
Score = 87.4 bits (213), Expect = 2e-16
Identities = 76/304 (25%), Positives = 139/304 (45%), Gaps = 18/304 (5%)
Query: 50 EVIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEP 109
E+I +FE++ KVN ++ EL+ RL LE N AD+ + D + L +A +L P
Sbjct: 33 EIIKKFEEKTGIKVNHTQAKAS-ELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSP 91
Query: 110 YKPKNADVIPEWIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLTKPEWRGKII 169
K + ++ D E+ +A+N T++ K+ EDL K E++G+I+
Sbjct: 92 VSSKYLEEFIPAHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIV 151
Query: 170 IEDPRTSSPGLAFMLWTIAVYKDKWLEYWAKL-------------RDNEIQIVKGWSAAW 216
+ T+ + IA +K + WAK RD Q+ G A
Sbjct: 152 MRSA-TAPYSKTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAG--EAK 208
Query: 217 GAFSEGEYPVVLSYATSPAATVYYDNKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEK 276
A Y +L + +P ++ + + G + I G + K +KN++ A+K
Sbjct: 209 FAVMNTYYIGLLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKK 268
Query: 277 FIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEKPVTIDPKEVQENLNKWLKQ 336
F+EF++S + Q+ L + + +P+ +V+L + K K I ++ EN+ + +K
Sbjct: 269 FMEFMLSPEIQKILTDSNYEFPIRNDVELSQTVK-DFGTFKEDQIPVSKIAENIKEAVKI 327
Query: 337 WEEV 340
++EV
Sbjct: 328 YDEV 331
>pir||T46949 probable periplasmic binding-protein of the2-aminoethylphosphonate
transporter phnS [imported] - Salmonella typhimurium
>gi|1763081|gb|AAB39644.1| (U69493) PhnS [Salmonella
typhimurium]
Length = 337
Score = 83.5 bits (203), Expect = 3e-15
Identities = 85/319 (26%), Positives = 130/319 (40%), Gaps = 34/319 (10%)
Query: 36 LTVYAYDSLE----YWLKEVIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVV 91
+TVY+ D L W + F K V V G G +V RL E+ NP+ADV+V
Sbjct: 25 VTVYSIDGLHDGDNSWYQVQFDAFTKATGITVRYV-EGGGGVVVERLAKERTNPQADVLV 83
Query: 92 GIDNTFLAKAIEADVLEPYKPKNADVIPEWIIKSFDPEFRLTPFDYGFLAFNYRTDLVKE 151
F+ +A +L + A IP D +P +L+F Y + L+K
Sbjct: 84 TAP-PFIQRAAAEKLLANFNTDTASAIP-------DANNLYSPLVKNYLSFIYNSKLLKT 135
Query: 152 PPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVY--KDKWLEYWAKLRDNEIQIV 209
P S +DL +++ K+ P ++ G A ML + KD Y KL+ N +
Sbjct: 136 APASWQDLLDGKFKNKLQYSTPGQAADGTAVMLQAFHSFGSKDAGFAYLGKLQANNVGPS 195
Query: 210 KGWSAAWGAFSEGEYPVVLSYATSPAATVYYDNKTNVR----AIEFKEGNFLQIEGA-GI 264
++GE V A + + NV+ A + E + L I G+
Sbjct: 196 ASTGKLTALVNKGEIYVANGDLQMNLAQM--ERNPNVKIFWPANDKGERSALAIPYVIGL 253
Query: 265 VKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVNKNV-KLPEVYKYALKVEKPVTIDP 323
V+G E +K I FL+S++AQ ++ W PV +V E YK A
Sbjct: 254 VQGAPQSENGKKLINFLLSKEAQTRVSELSWGMPVRSDVTPSDEHYKAA----------- 302
Query: 324 KEVQENLNKWLKQWEEVVV 342
E + W W++V V
Sbjct: 303 TAALEGVQSWQPNWDDVAV 321
>pir||T45460 ferric iron-binding protein [imported] - Actinobacillus
actinomycetemcomitans >gi|2340838|dbj|BAA21842.1|
(D89339) ferric iron binding protein [Actinobacillus
actinomycetemcomitans]
Length = 332
Score = 82.3 bits (200), Expect = 8e-15
Identities = 97/322 (30%), Positives = 139/322 (43%), Gaps = 37/322 (11%)
Query: 35 ELTVYAYDSLEYWLKEVIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGID 94
++TVY+ E K V F KE KV L S +L +L E D ADV
Sbjct: 24 DITVYSGQHKE-GAKAVADAFTKETGIKVTLNSAKSE-QLAGQLKEEGDKTPADVFYSEQ 81
Query: 95 NTFLAKAIEADVLEPYKP--------KNADVIP--EWIIKSFDPEFRLTPFDYGFLAFNY 144
A EA +LEP K V P +WI S R+ +D L+
Sbjct: 82 TAPFAALSEAGLLEPLSAETIKQTEYKGVPVAPKKDWIALS--GRSRVVVYDKNKLS--- 136
Query: 145 RTDLVKEPPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVYKDKW----LEYWAK 200
K+ KS+ D P+W+ KI TS AF+ IA+ K K L++
Sbjct: 137 ----EKDMEKSVLDYATPKWKDKIGYVP--TSG---AFLEQVIAITKLKGEKAALDWLKG 187
Query: 201 LRDNEIQIVKGWSAAWGAFSEGEYPVVL--SYATSPAATVYYDNKTNVRAIEFKE---GN 255
L++N K S A A GE P L +Y A ++K N R + G
Sbjct: 188 LKENGKLYAKN-SVALQAVENGEVPAALINNYYWYALAKEKGEDKLNSRLYFIRHQDPGA 246
Query: 256 FLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKV 315
+ GA ++KG+KNKE A+KF++FL +K QE + YP+ +V P + K+
Sbjct: 247 LVTYSGAAVLKGSKNKEEAKKFVDFLAGKKGQEAFTAVRAEYPLRPDVHSPFNMEPYAKL 306
Query: 316 EKP-VTIDPKEVQENLNKWLKQ 336
E P V+ + +EN NK ++Q
Sbjct: 307 EAPEVSATTAKDRENANKLIEQ 328
>sp|P43951|Y131_HAEIN PROTEIN HI0131 PRECURSOR >gi|1074276|pir||E64002 hypothetical
protein HI0131 - Haemophilus influenzae (strain Rd KW20)
>gi|1573085|gb|AAC21803.1| (U32699) afuA protein
[Haemophilus influenzae Rd]
Length = 346
Score = 79.6 bits (193), Expect = 5e-14
Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 16/244 (6%)
Query: 55 FEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKN 114
F ++Y+ K + + GS G ++ EK+NP+ADV G A+A E ++EPYK K+
Sbjct: 49 FGEKYDVKTSFIRNGS-GSTFAKVEAEKNNPQADVWFGGTFDPQAQAAELGLIEPYKSKH 107
Query: 115 ADVIPEWIIKSFDPEFRLTPFDY-GFLAFNYRTDL-----VKEPPKSLEDLTKPEWRGKI 168
D I E + + Y G L F T+ +KE PK +DLT P +G++
Sbjct: 108 IDEIVERFREPAKTKGHYVSSIYMGILGFGVNTERLAKLGIKEVPKCWKDLTDPRLKGEV 167
Query: 169 IIEDPRTSSPGLAFMLWTIAVYKDK-WLEYWAKLRDNEIQIVKGWSAAWGAFSEGEYPVV 227
I DP+++ + + ++ +K ++ +L N Q K + GE +
Sbjct: 168 QIADPQSAGTAYTALATFVQLWGEKEAFDFLKELHPNVSQYTKSGITPSRNSARGEATIG 227
Query: 228 LSYATSPAATVYYDNKTNVRAIEFK---EGNFLQIEGAGIVKGTKNKELAEKFIEFLISE 284
+ + Y K N +E EG ++ G I+KG +N + A+ F+++ +S+
Sbjct: 228 VGFLHD-----YALEKRNGAPLELVVPCEGTGYELGGVSILKGARNIDNAKLFVDWALSK 282
Query: 285 KAQE 288
+ QE
Sbjct: 283 EGQE 286
>pir||G82428 iron(III) ABC transporter, periplasmic iron-compound-binding
protein VCA0685 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9658103|gb|AAF96585.1| (AE004398)
iron(III) ABC transporter, periplasmic
iron-compound-binding protein [Vibrio cholerae]
Length = 344
Score = 79.6 bits (193), Expect = 5e-14
Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 27/323 (8%)
Query: 15 LLALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYNAKVNLVLVGSTGEL 74
LLAL +G L VY + + F ++YN + V GS G
Sbjct: 9 LLALSVLGSMMTAPLVHAEGRLVVYC-SATNAMCEAGTKAFAEKYNVNTSFVRNGS-GST 66
Query: 75 VNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYK-PKNADVIPEWIIKSFDPEFRLT 133
+ ++ EK+NP+ADV G ++A E D+L+ Y+ P+ A+++ + DP R
Sbjct: 67 LAKIDAEKNNPRADVWYGGTLDPQSQAGEMDLLQAYQSPELANIMEGFR----DPAKRKG 122
Query: 134 PFD----YGFLAFNYRTDLVKEP----PKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLW 185
+ G L F T+ + + P+ DLTKPE++G+I I DP++S +
Sbjct: 123 NYSSAVYMGILGFGVNTERLAQKGIPIPRCWADLTKPEYKGEIQISDPQSSGTAYTALAT 182
Query: 186 TIAVYKDKW-LEYWAKLRDNEIQIVKGWSAAWGAFSEGEYPVVLSYATSPAATVYYDNKT 244
I ++ + EY+ KL N Q K + GE + + + ++
Sbjct: 183 FIQLWDEPTAFEYFKKLDKNVSQYTKSGVTPSRNSARGEVAIGIGFLHD--YSLEQAKGA 240
Query: 245 NVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVK 304
+ I EG ++ G I+KG +N + A+ F+++++S++ QE Y + N +
Sbjct: 241 PLELISPCEGTGYELGGVSIIKGARNLDNAKLFVDWVLSKEGQEVAWKQGDSYQILTNTQ 300
Query: 305 LPEVYKYALKVEKPVTIDPKEVQ 327
+ P +DPK ++
Sbjct: 301 AE---------QSPNALDPKTLK 314
>pir||S74691 iron transport protein - Synechocystis sp. (strain PCC 6803)
>gi|1651916|dbj|BAA16842.1| (D90901) iron transport
protein [Synechocystis sp.]
Length = 360
Score = 78.8 bits (191), Expect = 9e-14
Identities = 81/297 (27%), Positives = 130/297 (43%), Gaps = 31/297 (10%)
Query: 28 ETKVENKELTVYAYDSLEYWL-KEVIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPK 86
+T E +E+ +Y+ S Y E+ +F E KVNL+ G EL+ R+ E N
Sbjct: 39 DTPGEQQEINLYS--SRHYNTDNELYAKFTAETGIKVNLI-EGKADELLERIKSEGANSP 95
Query: 87 ADVVVGIDNTFLAKAIEADVLEPYKPKNADVIPEWIIKSFDPEFRLTPFDYGFLAFNYRT 146
ADV++ +D L +A E + +P + + I+++ PE+ +P D + F R
Sbjct: 96 ADVLLTVDLARLWRAEEDGIFQPVQSE--------ILETNVPEYLRSP-DGMWFGFTKRA 146
Query: 147 DLV-----KEPPKSL---EDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVYKDKWLEYW 198
++ K P+ L E+L P+W+G++II +A ++ L +
Sbjct: 147 RVIMYNKGKVKPEELSTYEELADPKWKGRVIIRSSSNEYNQSLVASLVVADGEESTLAWA 206
Query: 199 AKLRDNEIQIVKGWSAAW-GAFSEGEYPVVLSY---------ATSPAATVYYDNKTNVRA 248
N + +G A A S GE + L+ + PA +N
Sbjct: 207 KGFVSNFAREPQGNDTAQIEAVSSGEADLTLANTYYMGRLLESEDPAQKAIAENVGVFFP 266
Query: 249 IEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKL 305
+ G + + G G+VK N+E A KFIEFL+SE AQ L + YPV V L
Sbjct: 267 NQEGRGTHVNVSGVGVVKTAPNREGAVKFIEFLVSEPAQAFLAQNNYEYPVLAGVPL 323
>pir||A82441 ABC transporter, periplasmic substrate-binding protein VCA0603
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658014|gb|AAF96504.1| (AE004390) ABC transporter,
periplasmic substrate-binding protein [Vibrio cholerae]
Length = 339
Score = 76.9 bits (186), Expect = 3e-13
Identities = 91/359 (25%), Positives = 158/359 (43%), Gaps = 37/359 (10%)
Query: 2 KRMKKAIVPILIVLLALGCIGGKTETETKVENKELTVYAYDSLEYWLKEVIPEFEKEYNA 61
KR+ K + + L++ G+ E+TVY + L + FEKE N
Sbjct: 7 KRILKGTLTAIAALMSAHAFAGQ----------EVTVYTAFETDL-LAKYKSAFEKE-NP 54
Query: 62 KVNLVLV-GSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKNADVIPE 120
+ + V STG + +L+ EKDNP+A+VV G+ + +A + VL+PY PK A+ E
Sbjct: 55 DIEIKWVRDSTGIMTAKLLAEKDNPRAEVVWGLAGSSMALLKDQGVLKPYTPKGAN---E 111
Query: 121 WIIKSFDPEFRLTPF--DYGFLAFNYRTDLVKE----PPKSLEDLTKPEWRGKIIIEDPR 174
DP+ + + D F A + + K+ P+S EDLT P ++G I + +P
Sbjct: 112 LRANLNDPQAQQAWYGNDAFFNAVCFNEAVAKQLNLPKPQSWEDLTNPVYKGHIAMPNPA 171
Query: 175 TSSPG-LAFMLWTIAVYKDKWLEYWAKLRDNEIQIVKGWSAAWGAFSEGEYPVVLSYATS 233
+S G + W + +DK +Y +L N S GE + +S AT
Sbjct: 172 SSGTGYMQVSAWLQNMGEDKAWDYMQRLDQNIAHYTHSGSKPCVQAGMGEVAIGISMATR 231
Query: 234 PAATVYYDNKTNVRAIEFKEGNFL--QIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLP 291
A KT ++ N + + E G+V K + A++ +++ +S+ A E
Sbjct: 232 GAKL-----KTQGAPLDVIVPNGIGWESEAVGLV---KESDAAKRVVDWSVSKAANELYI 283
Query: 292 TTQWMYPVNKNVKLPEVYKYALKVEKPVT-IDPKEVQENLNKWLKQWEEVVVQGKNPES 349
+ YP+ + + + VEK + +D ++ + + L+ W E P+S
Sbjct: 284 ES---YPIVGHQDVSKQVPNYPNVEKVMAKMDFTQMGVDRARVLQTWSEKFDAKSEPKS 339
>pir||T45065 iron binding protein afuA, periplasmic [imported] - Actinobacillus
actinomycetemcomitans >gi|1498595|gb|AAB66501.1|
(U66056) periplasmic iron repressible protein
[Actinobacillus actinomycetemcomitans]
Length = 332
Score = 76.1 bits (184), Expect = 6e-13
Identities = 95/322 (29%), Positives = 138/322 (42%), Gaps = 37/322 (11%)
Query: 35 ELTVYAYDSLEYWLKEVIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGID 94
++TVY+ E K V F KE KV L S +L +L E D ADV
Sbjct: 24 DITVYSGQHKE-GAKAVADAFTKETGIKVTLNSAKSE-QLAGQLKEEGDKTPADVFYSEQ 81
Query: 95 NTFLAKAIEADVLEPYKP--------KNADVIP--EWIIKSFDPEFRLTPFDYGFLAFNY 144
A EA +LEP K V P +WI S R+ +D L+
Sbjct: 82 TAPFAALSEAGLLEPLSAETIKQTEYKGVPVAPKKDWIALS--GRSRVVVYDKNKLS--- 136
Query: 145 RTDLVKEPPKSLEDLTKPEWRGKIIIEDPRTSSPGLAFMLWTIAVYKDKW----LEYWAK 200
K+ KS+ P+W+ KI TS AF+ IA+ K K L++
Sbjct: 137 ----EKDMEKSVLVHATPKWKDKIGYVP--TSG---AFLEQVIAITKLKGEKSALDWLKG 187
Query: 201 LRDNEIQIVKGWSAAWGAFSEGEYPVVL--SYATSPAATVYYDNKTNVRAIEFKE---GN 255
L++N K S A A GE P L +Y A ++K N R + G
Sbjct: 188 LKENGKLYAKN-SVALQAVENGEVPAALINNYYWDCLAKEKGEDKLNSRLYFIRHQDPGA 246
Query: 256 FLQIEGAGIVKGTKNKELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKV 315
+ GA ++KG+KNKE A+KF++FL +K QE + YP+ +V P + K+
Sbjct: 247 LVTYSGAAVLKGSKNKEEAKKFVDFLAGKKGQEAFTAVRAEYPLRPDVHSPFNMEPYAKL 306
Query: 316 EKP-VTIDPKEVQENLNKWLKQ 336
E P V+ + +E+ NK ++Q
Sbjct: 307 EAPEVSATTAKDREHANKLIEQ 328
>gb|AAB05032.1| (U05042) afuA gene product [Actinobacillus pleuropneumoniae]
>gi|1477455|gb|AAB17218.1| (U04954) afuA [Actinobacillus
pleuropneumoniae]
Length = 346
Score = 74.5 bits (180), Expect = 2e-12
Identities = 65/241 (26%), Positives = 113/241 (45%), Gaps = 10/241 (4%)
Query: 55 FEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKPKN 114
FE++Y+ K + + GS G ++ EK+NP+ADV G ++A E +LE Y+ N
Sbjct: 49 FEQKYDVKTSFIRNGS-GSTFAKIEAEKNNPQADVWYGGTLDPQSQAGELGLLEAYRSPN 107
Query: 115 ADVIPEWIIKSFDPEFRLTPFDY-GFLAFNYRTDLVKEP-----PKSLEDLTKPEWRGKI 168
D I + L+ Y G L F T+ +K+ P+ DLT P+ +G+I
Sbjct: 108 IDQIMPKFQDPAKVKGNLSSAVYIGILGFAVNTERLKKLGIEKIPQCWNDLTDPKLKGEI 167
Query: 169 IIEDPRTSSPGLAFMLWTIAVY-KDKWLEYWAKLRDNEIQIVKGWSAAWGAFSEGEYPVV 227
I DP++S + ++ +DK +Y+ L N Q K + GE V
Sbjct: 168 QIADPQSSGTAYTAIATFAQLWGEDKAFDYFKHLHPNISQYTKSGITPARHAARGETTVG 227
Query: 228 LSYATSPAATVYYDNKTNVRAIEFKEGNFLQIEGAGIVKGTKNKELAEKFIEFLISEKAQ 287
+ + A + + + + EG ++ G I+KG +N + A+ F++F +S++ Q
Sbjct: 228 IGFLHDYA--LEKEQGAPLEMVVPCEGTGYELGGVSILKGARNLDNAKLFVDFGLSKEGQ 285
Query: 288 E 288
E
Sbjct: 286 E 286
>pir||T10886 iron utilization protein A - Haemophilus influenzae
>gi|619398|gb|AAB32110.1| (S72674) HitA [Haemophilus
influenzae]
Length = 332
Score = 71.8 bits (173), Expect = 1e-11
Identities = 82/286 (28%), Positives = 125/286 (43%), Gaps = 31/286 (10%)
Query: 51 VIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPY 110
V FE+E KV L G + +L +L E D ADV A EA +L P
Sbjct: 39 VAKAFEQETGIKVTLNS-GKSAQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPI 97
Query: 111 KP--------KNADVIPEWIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLTKP 162
K + P+ + R+ +D+ L+ K+ KS+ D P
Sbjct: 98 SEQTIKQTAQKGVPLAPKKDWVALSGRSRVVVYDHTKLS-------EKDMEKSVLDYATP 150
Query: 163 EWRGKIIIEDPRTSSPGLAFMLWTIAVYK---DKWLEYWAK-LRDNEIQIVKGWSAAWGA 218
+W+GKI S+ G AF+ +A+ K DK W K L++N K S A A
Sbjct: 151 KWKGKI----GYVSTSG-AFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKN-SVALQA 204
Query: 219 FSEGEYPVVLS---YATSPAATVYYDN-KTNVRAIEFKE-GNFLQIEGAGIVKGTKNKEL 273
GE P L Y + A +N K+ + + ++ G + GA ++K +KN+
Sbjct: 205 VENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAE 264
Query: 274 AEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEKPV 319
A+KF++FL S+K QE L + YP+ +V P + K+E PV
Sbjct: 265 AQKFVDFLASKKGQEALVAVRAEYPLRADVVSPFNLEPYEKLEAPV 310
>sp|P35755|HITA_HAEIN IRON-UTILIZATION PERIPLASMIC PROTEIN PRECURSOR (MAJOR FERRIC IRON
BINDING PROTEIN) (FBP) (IRON-REGULATED 40 KD PROTEIN)
(MIRP)
Length = 332
Score = 71.4 bits (172), Expect = 1e-11
Identities = 85/288 (29%), Positives = 127/288 (43%), Gaps = 35/288 (12%)
Query: 51 VIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPY 110
V FE+E KV L G + +L +L E D ADV A EA +L P
Sbjct: 39 VAKAFEQETGIKVTLNS-GKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPI 97
Query: 111 KP--------KNADVIP--EWIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLT 160
K + P +WI S R+ +D+ L+ K+ KS+ D
Sbjct: 98 SEQTIQQTAQKGVPLAPKKDWIALS--GRSRVVVYDHTKLS-------EKDMEKSVLDYA 148
Query: 161 KPEWRGKIIIEDPRTSSPGLAFMLWTIAVYK---DKWLEYWAK-LRDNEIQIVKGWSAAW 216
P+W+GKI S+ G AF+ +A+ K DK W K L++N K S A
Sbjct: 149 TPKWKGKI----GYVSTSG-AFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKN-SVAL 202
Query: 217 GAFSEGEYPVVLS---YATSPAATVYYDN-KTNVRAIEFKE-GNFLQIEGAGIVKGTKNK 271
A GE P L Y + A +N K+ + + ++ G + GA ++K +KN+
Sbjct: 203 QAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQ 262
Query: 272 ELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEKPV 319
A+KF++FL S+K QE L + YP+ +V P + K+E PV
Sbjct: 263 AEAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPV 310
>pdb|1MRP| Ferric-Binding Protein From Haemophilus Influenzae
>gi|6573533|pdb|1D9V|A Chain A, Haemophilus Influenzae
Ferric-Binding Protein Apo Form
Length = 309
Score = 71.4 bits (172), Expect = 1e-11
Identities = 85/288 (29%), Positives = 127/288 (43%), Gaps = 35/288 (12%)
Query: 51 VIPEFEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPY 110
V FE+E KV L G + +L +L E D ADV A EA +L P
Sbjct: 16 VAKAFEQETGIKVTLNS-GKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPI 74
Query: 111 KP--------KNADVIP--EWIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLT 160
K + P +WI S R+ +D+ L+ K+ KS+ D
Sbjct: 75 SEQTIQQTAQKGVPLAPKKDWIALS--GRSRVVVYDHTKLS-------EKDMEKSVLDYA 125
Query: 161 KPEWRGKIIIEDPRTSSPGLAFMLWTIAVYK---DKWLEYWAK-LRDNEIQIVKGWSAAW 216
P+W+GKI S+ G AF+ +A+ K DK W K L++N K S A
Sbjct: 126 TPKWKGKI----GYVSTSG-AFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKN-SVAL 179
Query: 217 GAFSEGEYPVVLS---YATSPAATVYYDN-KTNVRAIEFKE-GNFLQIEGAGIVKGTKNK 271
A GE P L Y + A +N K+ + + ++ G + GA ++K +KN+
Sbjct: 180 QAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQ 239
Query: 272 ELAEKFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEKPV 319
A+KF++FL S+K QE L + YP+ +V P + K+E PV
Sbjct: 240 AEAQKFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPV 287
>pir||C64048 major ferric iron-binding protein - Haemophilus influenzae (strain
Rd KW20) >gi|1573048|gb|AAC21773.1| (U32695) iron(III)
ABC transporter, periplasmic-binding protein (hitA)
[Haemophilus influenzae Rd]
Length = 294
Score = 71.0 bits (171), Expect = 2e-11
Identities = 84/284 (29%), Positives = 126/284 (43%), Gaps = 35/284 (12%)
Query: 55 FEKEYNAKVNLVLVGSTGELVNRLILEKDNPKADVVVGIDNTFLAKAIEADVLEPYKP-- 112
FE+E KV L G + +L +L E D ADV A EA +L P
Sbjct: 5 FEQETGIKVTLNS-GKSEQLAGQLKEEGDKTPADVFYTEQTATFADLSEAGLLAPISEQT 63
Query: 113 ------KNADVIP--EWIIKSFDPEFRLTPFDYGFLAFNYRTDLVKEPPKSLEDLTKPEW 164
K + P +WI S R+ +D+ L+ K+ KS+ D P+W
Sbjct: 64 IQQTAQKGVPLAPKKDWIALS--GRSRVVVYDHTKLS-------EKDMEKSVLDYATPKW 114
Query: 165 RGKIIIEDPRTSSPGLAFMLWTIAVYK---DKWLEYWAK-LRDNEIQIVKGWSAAWGAFS 220
+GKI S+ G AF+ +A+ K DK W K L++N K S A A
Sbjct: 115 KGKI----GYVSTSG-AFLEQVVALSKMKGDKVALNWLKGLKENGKLYAKN-SVALQAVE 168
Query: 221 EGEYPVVLS---YATSPAATVYYDN-KTNVRAIEFKE-GNFLQIEGAGIVKGTKNKELAE 275
GE P L Y + A +N K+ + + ++ G + GA ++K +KN+ A+
Sbjct: 169 NGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGALVSYSGAAVLKASKNQAEAQ 228
Query: 276 KFIEFLISEKAQEKLPTTQWMYPVNKNVKLPEVYKYALKVEKPV 319
KF++FL S+K QE L + YP+ +V P + K+E PV
Sbjct: 229 KFVDFLASKKGQEALVAARAEYPLRADVVSPFNLEPYEKLEAPV 272
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.136 0.403
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143337539
Number of Sequences: 2977
Number of extensions: 6351201
Number of successful extensions: 12274
Number of sequences better than 1.0e-10: 29
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 12203
Number of HSP's gapped (non-prelim): 29
length of query: 352
length of database: 189,106,746
effective HSP length: 55
effective length of query: 297
effective length of database: 156,189,961
effective search space: 46388418417
effective search space used: 46388418417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 165 (68.7 bits)