BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1837 747558 747226 -111 !not a gene!
         (111 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71007 hypothetical protein PH1356 - Pyrococcus horikoshii ...   133  6e-31

>pir||F71007 hypothetical protein PH1356 - Pyrococcus horikoshii
           >gi|3257779|dbj|BAA30462.1| (AP000006) 111aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 111
           
 Score =  133 bits (332), Expect = 6e-31
 Identities = 64/111 (57%), Positives = 78/111 (69%)

Query: 1   MPNSALSHYWDCHGIHYLLNLLDGSHSRNSARFPYVSWNLVEGHHSYRSSFLGNPSLLCI 60
           M +S L HY + HGIHYLL+LL+  HSRN+   PYV  NLV+GH+   +S     SL  +
Sbjct: 1   MSDSTLGHYRNRHGIHYLLDLLNRGHSRNATGLPYVCRNLVKGHYCNCTSLFSYSSLFRV 60

Query: 61  GNVHYHSAFDHLCESPLEPLGPLLHDYFQLVHIKHLPSMSYQVKSLYKAFP 111
           G +HY+SAF HLCE+PL+PL  L H+YFQLVHIK  P   YQVKSLYK FP
Sbjct: 61  GYIHYNSAFYHLCETPLQPLSSLFHNYFQLVHIKPPPYDLYQVKSLYKVFP 111


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.139    0.468 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47284666
Number of Sequences: 2977
Number of extensions: 1918793
Number of successful extensions: 3154
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3153
Number of HSP's gapped (non-prelim): 1
length of query: 111
length of database: 189,106,746
effective HSP length: 45
effective length of query: 66
effective length of database: 162,174,831
effective search space: 10703538846
effective search space used: 10703538846
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 160 (66.7 bits)