BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1842 (soxA-like) DE:sarcosine oxidase, subunit alpha related
(soxA), Nter fragment
(496 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75122 sarcosine oxidase alpha chain truncated homolog PAB1... 1001 0.0
pir||E71008 hypothetical protein PH1363 - Pyrococcus horikoshii ... 856 0.0
pir||C75144 sarcosine oxidase, chain alpha (soxa) PAB0212 - Pyro... 185 7e-46
pir||H71183 probable D-nopaline dehydrogenase - Pyrococcus horik... 178 9e-44
gi|11497889 sarcosine oxidase, subunit alpha (soxA) [Archaeoglob... 116 4e-25
gb|AAK40532.1| Sarcosine oxidase, subunit alpha related (soxA), ... 92 2e-17
sp|O87386|SOXA_RHIME SARCOSINE OXIDASE ALPHA SUBUNIT (SARCOSINE ... 85 2e-15
>pir||H75122 sarcosine oxidase alpha chain truncated homolog PAB1842
[similarity] - Pyrococcus abyssi (strain Orsay)
>gi|5458208|emb|CAB49697.1| (AJ248285) sarcosine
oxidase, subunit alpha related (soxA), Nter fragment
[Pyrococcus abyssi]
Length = 496
Score = 1001 bits (2559), Expect = 0.0
Identities = 496/496 (100%), Positives = 496/496 (100%)
Query: 1 MEVHLMRPLDLTEKSGRKVTIYFEGKELEAYEGEKISVALLANGIYWLTTSTEGRKRGAF 60
MEVHLMRPLDLTEKSGRKVTIYFEGKELEAYEGEKISVALLANGIYWLTTSTEGRKRGAF
Sbjct: 1 MEVHLMRPLDLTEKSGRKVTIYFEGKELEAYEGEKISVALLANGIYWLTTSTEGRKRGAF 60
Query: 61 TFGPVPMKVNGVKGVDGRKTKVKEGMRIERQGYQEFHEEPVIEGGEVKEVVVDVAVVGGG 120
TFGPVPMKVNGVKGVDGRKTKVKEGMRIERQGYQEFHEEPVIEGGEVKEVVVDVAVVGGG
Sbjct: 61 TFGPVPMKVNGVKGVDGRKTKVKEGMRIERQGYQEFHEEPVIEGGEVKEVVVDVAVVGGG 120
Query: 121 PAGIGATLELQDDLTVALIEEKGWLGGDMWLKSTKQEGFNKEARKAVEELTKKIKDEVKV 180
PAGIGATLELQDDLTVALIEEKGWLGGDMWLKSTKQEGFNKEARKAVEELTKKIKDEVKV
Sbjct: 121 PAGIGATLELQDDLTVALIEEKGWLGGDMWLKSTKQEGFNKEARKAVEELTKKIKDEVKV 180
Query: 181 FLGASALGVFDKGEYFLVPVVKENSLIEILAKRVVLATGAVDSIMLFENNDIPGIFRRDF 240
FLGASALGVFDKGEYFLVPVVKENSLIEILAKRVVLATGAVDSIMLFENNDIPGIFRRDF
Sbjct: 181 FLGASALGVFDKGEYFLVPVVKENSLIEILAKRVVLATGAVDSIMLFENNDIPGIFRRDF 240
Query: 241 ALEVMNVWEVAPGWNVAVTGSRAEEVIQELERWGIDYVHIPNVKRAEGDEKVEKVIDMNG 300
ALEVMNVWEVAPGWNVAVTGSRAEEVIQELERWGIDYVHIPNVKRAEGDEKVEKVIDMNG
Sbjct: 241 ALEVMNVWEVAPGWNVAVTGSRAEEVIQELERWGIDYVHIPNVKRAEGDEKVEKVIDMNG 300
Query: 301 NEYKVDALIFADGRRPDINPITQAGGRIAFGRGYYSPIIDEKHRIRNGIYVAGSAVSIKP 360
NEYKVDALIFADGRRPDINPITQAGGRIAFGRGYYSPIIDEKHRIRNGIYVAGSAVSIKP
Sbjct: 301 NEYKVDALIFADGRRPDINPITQAGGRIAFGRGYYSPIIDEKHRIRNGIYVAGSAVSIKP 360
Query: 361 HYANYLEGRLVGAYILKEFGFDSEPCIYEEKLKEYEPESLPIPRIPLEKFKLEDVQICGC 420
HYANYLEGRLVGAYILKEFGFDSEPCIYEEKLKEYEPESLPIPRIPLEKFKLEDVQICGC
Sbjct: 361 HYANYLEGRLVGAYILKEFGFDSEPCIYEEKLKEYEPESLPIPRIPLEKFKLEDVQICGC 420
Query: 421 DVSLKKVDDVIRRGITDLQIIKRLTHLAMGFCQGRYCLFNGALIVSQRTGRRLSEIDLPV 480
DVSLKKVDDVIRRGITDLQIIKRLTHLAMGFCQGRYCLFNGALIVSQRTGRRLSEIDLPV
Sbjct: 421 DVSLKKVDDVIRRGITDLQIIKRLTHLAMGFCQGRYCLFNGALIVSQRTGRRLSEIDLPV 480
Query: 481 ARSPIKNVRMGVLARR 496
ARSPIKNVRMGVLARR
Sbjct: 481 ARSPIKNVRMGVLARR 496
>pir||E71008 hypothetical protein PH1363 - Pyrococcus horikoshii
>gi|3257786|dbj|BAA30469.1| (AP000006) 493aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 493
Score = 856 bits (2188), Expect = 0.0
Identities = 407/492 (82%), Positives = 457/492 (92%)
Query: 5 LMRPLDLTEKSGRKVTIYFEGKELEAYEGEKISVALLANGIYWLTTSTEGRKRGAFTFGP 64
LMRPLDLTEK G+KVTIYFEGKELEAYEGEK+ VALLAN IYWLTTS EGRKRGAFTFGP
Sbjct: 2 LMRPLDLTEKRGKKVTIYFEGKELEAYEGEKLPVALLANEIYWLTTSNEGRKRGAFTFGP 61
Query: 65 VPMKVNGVKGVDGRKTKVKEGMRIERQGYQEFHEEPVIEGGEVKEVVVDVAVVGGGPAGI 124
VPM VNGVKG++ R+ KVK+GM+IERQGY +FHEEPV+E GE++ VVVDVA++GGGPAGI
Sbjct: 62 VPMTVNGVKGLEARRIKVKDGMKIERQGYYDFHEEPVVEPGEIERVVVDVAIIGGGPAGI 121
Query: 125 GATLELQDDLTVALIEEKGWLGGDMWLKSTKQEGFNKEARKAVEELTKKIKDEVKVFLGA 184
GA LELQ LTVALIEE+GWLGGDMWLK KQEGFNK++RK VEEL K+ + K++L
Sbjct: 122 GAALELQQYLTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKLNENTKIYLET 181
Query: 185 SALGVFDKGEYFLVPVVKENSLIEILAKRVVLATGAVDSIMLFENNDIPGIFRRDFALEV 244
SALGVFDKGEYFLVPVV+ + LIEILAKRVVLATGA+DS MLFENND+PG+FRRDFALEV
Sbjct: 182 SALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRRDFALEV 241
Query: 245 MNVWEVAPGWNVAVTGSRAEEVIQELERWGIDYVHIPNVKRAEGDEKVEKVIDMNGNEYK 304
MNVWEVAPG VAVTGS+A+EVIQELERWGIDYVHIPNVKR EG+EKVE+VIDMN +EYK
Sbjct: 242 MNVWEVAPGRKVAVTGSKADEVIQELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYK 301
Query: 305 VDALIFADGRRPDINPITQAGGRIAFGRGYYSPIIDEKHRIRNGIYVAGSAVSIKPHYAN 364
VDALIFADGRRPDINPITQAGG++ F RGYYSP++DE HRI++GIYVAGSAVSIKPHYAN
Sbjct: 302 VDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHRIKDGIYVAGSAVSIKPHYAN 361
Query: 365 YLEGRLVGAYILKEFGFDSEPCIYEEKLKEYEPESLPIPRIPLEKFKLEDVQICGCDVSL 424
YLEG+LVGAYILKEFG+D++PCIYEEKL+EYEPESL IPRIPL+KF LEDVQICGCDVSL
Sbjct: 362 YLEGKLVGAYILKEFGYDAQPCIYEEKLREYEPESLSIPRIPLDKFNLEDVQICGCDVSL 421
Query: 425 KKVDDVIRRGITDLQIIKRLTHLAMGFCQGRYCLFNGALIVSQRTGRRLSEIDLPVARSP 484
KKVD+VIR+GITDLQIIKRLTHLAMGFCQGRYCLFNGA++VSQRTG++LSEIDLPVARSP
Sbjct: 422 KKVDEVIRKGITDLQIIKRLTHLAMGFCQGRYCLFNGAVVVSQRTGKKLSEIDLPVARSP 481
Query: 485 IKNVRMGVLARR 496
IKNV+MG+LARR
Sbjct: 482 IKNVKMGILARR 493
>pir||C75144 sarcosine oxidase, chain alpha (soxa) PAB0212 - Pyrococcus abyssi
(strain Orsay) >gi|5457744|emb|CAB49234.1| (AJ248284)
sarcosine oxidase, subunit alpha (soxA) [Pyrococcus
abyssi]
Length = 481
Score = 185 bits (466), Expect = 7e-46
Identities = 150/446 (33%), Positives = 217/446 (48%), Gaps = 56/446 (12%)
Query: 9 LDLTEKSGRKVTIYFEGKELEAYEGEKISVALLANGIYWLTTST-EGRKRGAFTF----G 63
L+ K GRKVTIY++GK +EAYEGE I+ AL A GI L S + R RG F
Sbjct: 12 LNFESKRGRKVTIYYKGKPIEAYEGETIAAALHAAGIKVLNYSRIKKRPRGLFCAIGKCS 71
Query: 64 PVPMKVNGVKGVDGRKTKVKEGMRIERQGYQEFHEEPVIEGGEVKEVVVDVAVVGGGPAG 123
M VNG+ V T V++GMRIE + E ++ V+ V D+ V+GGGPAG
Sbjct: 72 SCLMTVNGIPNVRTCITLVEDGMRIEENAPRLPKELKELKKRNVRRVKSDIIVIGGGPAG 131
Query: 124 IGATLELQD-DLTVALIEEKGWLGGDMWLKSTKQEGFNKEAR-----KAVEELTKKIKDE 177
+ A + D V LI+E LGG + ++ K G + K E L ++K
Sbjct: 132 MMAAISAHDAGAKVVLIDENPMLGGQLVKQTHKFFGKRSQFAGVRGVKIAEILENEVKKR 191
Query: 178 -VKVFLGASALGVFDKG-EYFLVPVVKENSLIEILAKRVVLATGAVDSIMLFENNDIPGI 235
++VFL SA+G+F G E +V + KE+ LIE+ + +++ATGA++ + FENND+PGI
Sbjct: 192 NIEVFLQTSAVGIFQDGNEKIVVGIRKESELIELHGRAIIVATGAMEKSVPFENNDLPGI 251
Query: 236 FRRDFALEVMNVWEVAPGWNVAVTGS----------------RAEEVIQELERWGIDYVH 279
+ +MN + V PG + G+ + E +++ + + G +VH
Sbjct: 252 YGAGAIQTLMNTYGVKPGEKALIVGAGNVGLILAYQLIQAGVKVEAIVEAMPKIGGYFVH 311
Query: 280 IPNVK-------------RAEGDEKVEKV----IDMN-----GNE--YKVDALIFADGRR 315
V+ RAEG EKVE+ ID N G E + VD + A G R
Sbjct: 312 AAKVRRLGVPILTRHTILRAEGKEKVERAIVAQIDENWRPIPGTEKIFDVDLIAIAVGLR 371
Query: 316 PDINPITQAGGRIAFGR--GYYSPIIDE-KHRIRNGIYVAGSAVSIKPHYANYLEGRLVG 372
P I + QAG +I + R G + + DE GI+VAG I+ LEG++ G
Sbjct: 372 PSIELLQQAGCQIRYVRELGGHVAVRDEWLETTVRGIFVAGDTAGIEEATTAMLEGKIAG 431
Query: 373 AYILKEFGFDSEPCIYEEKLKEYEPE 398
G SE + E + E E E
Sbjct: 432 IAAALRLGIASESLVKEIEKTERELE 457
>pir||H71183 probable D-nopaline dehydrogenase - Pyrococcus horikoshii
>gi|3258180|dbj|BAA30863.1| (AP000007) 482aa long
hypothetical D-nopaline dehydrogenase [Pyrococcus
horikoshii]
Length = 482
Score = 178 bits (448), Expect = 9e-44
Identities = 154/471 (32%), Positives = 220/471 (46%), Gaps = 75/471 (15%)
Query: 9 LDLTEKSGRKVTIYFEGKELEAYEGEKISVALLANGIYWLTTS-TEGRKRGAFTF----G 63
LD +K RKVTIY++G+ +EAYEGE I+ AL A GI L S R RG F
Sbjct: 12 LDFEKKRKRKVTIYYKGQPIEAYEGETIAAALHAAGIRVLNYSRVRKRPRGLFCAIGKCS 71
Query: 64 PVPMKVNGVKGVDGRKTKVKEGMRIERQGYQEFHEEPVIEGG--------EVKEVVVDVA 115
M VNG+ V T V++GM+IE +P++ K V D+
Sbjct: 72 SCLMTVNGIPNVRTCITLVEDGMKIEEN-------KPILPANINKKDKKKRAKIVKGDII 124
Query: 116 VVGGGPAGIGATLELQDD-LTVALIEEKGWLGGDMWLKSTKQEGFNKEAR-----KAVEE 169
VVGGGPAG+ A + D V LI+E LGG + ++ K G + K E
Sbjct: 125 VVGGGPAGMMAAISASDTGAKVILIDESPMLGGQLVKQTHKFFGKRDQFAGIRGIKIAEI 184
Query: 170 LTKKI--KDEVKVFLGASALGVFDKGEYFLV-PVVKENSLIEILAKRVVLATGAVDSIML 226
L ++I ++ +K +L SA+G+F GE LV V KEN LIE K V++ATGA++ +
Sbjct: 185 LRREIEKRENIKAYLRTSAVGIFQDGEEKLVIGVRKENELIEFKGKAVIVATGAMEKTIP 244
Query: 227 FENNDIPGIFRRDFALEVMNVWEVAPGWNVAVTGS----------------RAEEVIQEL 270
FENND+PGI+ +MN + + PG + G+ + + +++ +
Sbjct: 245 FENNDLPGIYGAGAIQTLMNTYGIKPGEKALIVGAGNVGLILAYQLLQANVQVQAIVEAM 304
Query: 271 ERWGIDYVHIPNVKR-------------AEGDEKVEKV----IDMNGNE-------YKVD 306
+ G +VH V+R AEG+EKVE+ ID N N + VD
Sbjct: 305 PKIGGYFVHAAKVRRLGVPILTRHTILKAEGEEKVERAIVAEIDENWNPIPGTEKIFDVD 364
Query: 307 ALIFADGRRPDINPITQAGGRIAFGR--GYYSPIIDE-KHRIRNGIYVAGSAVSIKPHYA 363
+ A G RP I + QAG +I + R G + P+ D GI+VAG I+
Sbjct: 365 LIAIAVGLRPSIELLQQAGCQIKYVRELGGHVPVRDRWMETTVKGIFVAGDTAGIEEATT 424
Query: 364 NYLEGRLVGAYILKEFGFDSEPCIYEEKLKEYEPE---SLPIPRIPLEKFK 411
LEG++ G G E + E + E E E S P R +E K
Sbjct: 425 AMLEGKIAGLAAALRLGIAGEEWVKEIEKTEKELEEFRSGPFGRRVIEGIK 475
>gi|11497889 sarcosine oxidase, subunit alpha (soxA) [Archaeoglobus fulgidus]
>gi|7482953|pir||A69284 coenzyme F420--quinone
oxidoreductase (EC 1.6.5.-) 56K chain - Archaeoglobus
fulgidus >gi|2650363|gb|AAB90959.1| (AE001086) sarcosine
oxidase, subunit alpha (soxA) [Archaeoglobus fulgidus]
Length = 534
Score = 116 bits (289), Expect = 4e-25
Identities = 127/493 (25%), Positives = 201/493 (40%), Gaps = 112/493 (22%)
Query: 14 KSGRKVTIYFEGKELEAYEGEKISVALLANGIYWLTTSTEG-RKRGAFTF----GPVPMK 68
K G++VTIY GK ++AYEGE ++ AL A G+ + S R RG F M+
Sbjct: 18 KRGKEVTIYLNGKPVKAYEGETVAAALYAAGVRVFSRSFRWHRPRGFFCAIGKCSACMME 77
Query: 69 VNGVKGVDGRKTKVKEGMRIERQG------------------------------------ 92
V+G+ V K V++GM++ Q
Sbjct: 78 VDGIPNVRTCKVYVRDGMQVRTQSGMPDAEKDVFSILDDVIDKVFPHGSHYTKFTTSKKA 137
Query: 93 ----------YQEFHEEP--VIEG-GEVKEVVVDVAVVGGGPAGIGATLEL-QDDLTVAL 138
+ F P V +G E++E+ DV V+GGGP G+ A + + V L
Sbjct: 138 REFMVKRMRKFTGFGNPPKAVFQGRAELEEIETDVLVIGGGPGGMSAAINAGKYGAKVLL 197
Query: 139 IEEKGWLGGDMWLKSTKQEGFNKEARKA--------VEELTKKIKDEVKVFLGASALGVF 190
++E +LGG + ++ + G KE +EE I++ V+V G++
Sbjct: 198 VDENPFLGGQLVKQTHRFFGSAKERAGTRGIKIAGILEEELNSIEN-VEVRRETRVFGIY 256
Query: 191 --DKGEYFLVPVVKENSLIEILAKRVVLATGAVDSIMLFENNDIPGIFRRDFALEVMNVW 248
+ G Y + E L+ I AK++V+ATGA + ++FENND+PG++ +MNV+
Sbjct: 257 NGEAGAYQRLND-DEGKLLRIKAKKIVVATGAYERTLIFENNDLPGVYGAGGVQTLMNVY 315
Query: 249 EVAPG----------------WNVAVTGSRAEEVIQELERWGIDYVHIPNVKR------- 285
+ PG + + G +++ + R G +VH V+R
Sbjct: 316 GIKPGNMGLIVGSGNVGLILTYQLMQAGVNVAAIVEAMPRIGGYFVHAAKVRRLGVPIYV 375
Query: 286 ------AEGDEKVE-----------KVIDMNGNEYKVDALIFADGRRPDINPITQAGGRI 328
A G + VE + I E K D + A G P + QAG +
Sbjct: 376 RHTILKAIGRKSVEGAVIAQLDDRWQPIPGTEKEIKCDFICVAVGLSPTHELLYQAGCEM 435
Query: 329 AF--GRGYYSPIIDEKHRIR-NGIYVAGSAVSIKPHYANYLEGRLVGAYILKEFGFDSEP 385
F G P+ + G+YVAG I+ A +EGR+ G + G+ E
Sbjct: 436 KFVPELGGIVPLRTRFNETSVKGLYVAGDVAGIEEATAAIMEGRIAGIHAAVTLGYGGEE 495
Query: 386 CIYE--EKLKEYE 396
E E +KE E
Sbjct: 496 AKKELDEAVKEIE 508
>gb|AAK40532.1| Sarcosine oxidase, subunit alpha related (soxA), putative
(soxA-like) [Sulfolobus solfataricus]
Length = 483
Score = 91.7 bits (224), Expect = 2e-17
Identities = 97/391 (24%), Positives = 170/391 (42%), Gaps = 51/391 (13%)
Query: 101 VIEGGEVKEVV---VDVAVVGGGPAGIGATLELQDDLTVALIEEKGWLGGDMW--LKSTK 155
+ E E +E++ ++ ++GGG +G+G E+ + LI D+ L
Sbjct: 91 ITENTEKRELIFIELENLIIGGGTSGLGVLSEISKEEKTLLISSNIESNTDIPYPLPQIN 150
Query: 156 QEGFNKEARKAVEELTKKIKDEVKVFLGASALGVFDKGEYFLVPVVKENSLIEILAKRVV 215
++ F+K R + E +I + + LG FD+G FL ++ ++ + AKRV
Sbjct: 151 KDEFSKLLRDTINENKDRILEGI-------LLGKFDEGIGFLT----KDKILMVRAKRVF 199
Query: 216 LATGAVDSIMLFENNDIPGIFRRDFALEVMN--VWEVAPGWN------------------ 255
LATG +F+ NDIPGI ++ L N +A G +
Sbjct: 200 LATGGRYIPPIFDGNDIPGIISKNLYLRYGNRITKAIALGNSDDIIKVLFKVEKRVIINN 259
Query: 256 -VAVTGSRAEEVIQELERWGIDYVHIPNVKRAEGDEKVEKVIDMNGNEYKVDALIFADGR 314
V +E+I EL G++ ++ N+K + K+I N + + L++A +
Sbjct: 260 GVLFLSKYYKELIDEL---GVEIINTNNLKVKREKGGMLKIIT-NERSFDSNILVYAIVK 315
Query: 315 RPDINPITQAGGRIAFGRGY--YSPIIDEKHRIRNGIYVAGSAVSIKPHYANYLEGRL-V 371
+P I+ G F + Y PI + + + IY+ G I Y ++L G+ V
Sbjct: 316 QPKIDHSYNIGIPYNFSEYFHIYMPIHSIEGKTNDNIYIVGGMRGISDEYTSFLSGKTAV 375
Query: 372 GAYILKEFGFDSEPCIY-EEKLKEYEPESLPIPRIPLEKFKLEDVQICGC-DVSLKKVDD 429
L EF + + Y + + P+ P P I K +C C D++L +V+
Sbjct: 376 NEKYLDEFINNLKDYTYIYDYYYQKNPKENPSPYIYGNKG-----YVCECEDITLSEVNR 430
Query: 430 VIRRGITDLQIIKRLTHLAMGFCQGRYCLFN 460
+ RG + ++ IKR L G CQG+ C ++
Sbjct: 431 QVGRGFSKVEEIKRTIGLGTGECQGKLCTYS 461
>sp|O87386|SOXA_RHIME SARCOSINE OXIDASE ALPHA SUBUNIT (SARCOSINE OXIDASE SUBUNIT)
Length = 987
Score = 85.0 bits (207), Expect = 2e-15
Identities = 132/572 (23%), Positives = 211/572 (36%), Gaps = 111/572 (19%)
Query: 23 FEGKELEAYEGEKISVALLANGIYWLTTSTE-GRKRGAFTFGPVPMKVNGVKGVDGRKT- 80
F+G+ ++ EG+ ++ ALLANG + S + R RG T G G GR
Sbjct: 22 FDGRPMQGLEGDTLASALLANGRMLVGRSFKYHRPRGILTAGAAEPNALVTVGRGGRAEP 81
Query: 81 -------KVKEGMRIERQG-------------------------YQEFH---------EE 99
++ EG+ Q Y+ F E
Sbjct: 82 NTRATMQELYEGLEARSQNRWPSLAFDIGALNGLLSPFLGAGFYYKTFMWPAPLWEKLYE 141
Query: 100 PVI---------------EGGEVKEVVVDVAVVGGGPAGIGATLEL-QDDLTVALIEEKG 143
PVI + E D+ V+G GP G+ A L + V L++E
Sbjct: 142 PVIRRAAGLGKASYEADPDAYEKSWAHCDLLVIGAGPTGLAAALTAGRAGARVILVDEGS 201
Query: 144 WLGGDMWLKSTKQEGFNKEARKAVEELTKKIKDE------VKVFLGASALGVFDKGEYFL 197
GG + + +G KA + + DE V+V + +A G +D +
Sbjct: 202 LPGGSLLSDTATIDG------KAAADFARDTSDELRSMPNVQVLVRTTAFGWYDGNVFGA 255
Query: 198 VPVVKEN-----------SLIEILAKRVVLATGAVDSIMLFENNDIPGIFRRDFALEVMN 246
V V+++ L I+A + +LATGA + ++F ND PG+ +N
Sbjct: 256 VERVQKHVREPASHLPVERLWRIVAGKALLATGAEERPLVFGGNDRPGVMMAGAMRAYLN 315
Query: 247 VWEVAPGWNVAV--TGSRAEEVIQELERWGIDYVHIPNVKRAEGDE-------------- 290
+ VAPG A+ T + QELE G+D V I + + A G +
Sbjct: 316 RYGVAPGRTPAIFTTNDTGYTLAQELEAAGVDVVAIVDSRPAAGVDYRGKARLVREAVVC 375
Query: 291 -----KVEKVIDMN----GNEYKVDALIFADGRRPDINPITQAGGRIAFGRGYYSPIIDE 341
K I+++ VDAL A G P I+ GG+ + + +
Sbjct: 376 GTKGGKAISAIEVHHGGRTETIAVDALAMAGGFDPIIHLACHRGGKPVWSAEKAAFLAPG 435
Query: 342 KHRIRNGIYVAGSAVSIKPHYANYLEGRLVGAYILKEFGFDSEPCIYEEKLKEYEPESLP 401
+ G+ VAG A + A EG I++E G P + K++ E P
Sbjct: 436 SLK---GLEVAGGAAATTGLAACLGEGAARAEAIVRELGLPCPP-VAVVKVESEEGIRSP 491
Query: 402 IPRIPLEKFKLEDVQICGCDVSLKKVDDVIRRGITDLQIIKRLTHLAMGFCQGRYCLFNG 461
P + K + DV LK + +R G + +++ KR T M QG+ N
Sbjct: 492 APLWSIPGIKDKAFVDFQNDVHLKDIGLAVREGYSHVELAKRYTTSGMATDQGKLSNVNA 551
Query: 462 ALIVSQRTGRRLSEIDLPVARSPIKNVRMGVL 493
++++ G +E+ R V G L
Sbjct: 552 IGLIAKARGVSPAEVGTTTFRPFYTPVSFGAL 583
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.141 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189880949
Number of Sequences: 2977
Number of extensions: 8672146
Number of successful extensions: 21666
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 21640
Number of HSP's gapped (non-prelim): 12
length of query: 496
length of database: 189,106,746
effective HSP length: 56
effective length of query: 440
effective length of database: 155,591,474
effective search space: 68460248560
effective search space used: 68460248560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)