BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1844 (PAB1844) DE:Hypothetical protein
(323 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75122 hypothetical protein PAB1844 - Pyrococcus abyssi (st... 626 e-178
pir||G71008 hypothetical protein PH1365 - Pyrococcus horikoshii ... 315 4e-85
pir||E71137 hypothetical protein PH0865 - Pyrococcus horikoshii ... 212 4e-54
pir||C75122 hypothetical protein PAB1848 - Pyrococcus abyssi (st... 148 1e-34
pir||C71009 hypothetical protein PH1369 - Pyrococcus horikoshii ... 146 4e-34
gi|11498737 A. fulgidus predicted coding region AF1137 [Archaeog... 86 6e-16
>pir||F75122 hypothetical protein PAB1844 - Pyrococcus abyssi (strain Orsay)
>gi|5458206|emb|CAB49695.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 323
Score = 626 bits (1596), Expect = e-178
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MGLMTIAVKEFEVNIRTKRFYGTIAFFLILAVIFIRLFNSVLPSHIYITPFQGILFGSFQ 60
MGLMTIAVKEFEVNIRTKRFYGTIAFFLILAVIFIRLFNSVLPSHIYITPFQGILFGSFQ
Sbjct: 1 MGLMTIAVKEFEVNIRTKRFYGTIAFFLILAVIFIRLFNSVLPSHIYITPFQGILFGSFQ 60
Query: 61 TPLVYAITLVSILLGATAINSEINKGTIKVLYSKPIYRDTIIFGKLLGGTITIAFILGIL 120
TPLVYAITLVSILLGATAINSEINKGTIKVLYSKPIYRDTIIFGKLLGGTITIAFILGIL
Sbjct: 61 TPLVYAITLVSILLGATAINSEINKGTIKVLYSKPIYRDTIIFGKLLGGTITIAFILGIL 120
Query: 121 WVVMIGIALISGVPVSGYDVSRLLVLYMFSVLYGAALYALGMLLSTLIRSQTNSMLAGVF 180
WVVMIGIALISGVPVSGYDVSRLLVLYMFSVLYGAALYALGMLLSTLIRSQTNSMLAGVF
Sbjct: 121 WVVMIGIALISGVPVSGYDVSRLLVLYMFSVLYGAALYALGMLLSTLIRSQTNSMLAGVF 180
Query: 181 IFLLFAFIIPGILAPILALAFAGTPPTITYTPNASETSMFQSREMMEWMDRYVAVYMKIT 240
IFLLFAFIIPGILAPILALAFAGTPPTITYTPNASETSMFQSREMMEWMDRYVAVYMKIT
Sbjct: 181 IFLLFAFIIPGILAPILALAFAGTPPTITYTPNASETSMFQSREMMEWMDRYVAVYMKIT 240
Query: 241 STSILYHYENLMRMVFGIKQTEDIVGQLSALLVSNDTSTWKISEERPIIEGIAMSLNNIV 300
STSILYHYENLMRMVFGIKQTEDIVGQLSALLVSNDTSTWKISEERPIIEGIAMSLNNIV
Sbjct: 241 STSILYHYENLMRMVFGIKQTEDIVGQLSALLVSNDTSTWKISEERPIIEGIAMSLNNIV 300
Query: 301 VITVFLVVSLALSYYKFVRMDLR 323
VITVFLVVSLALSYYKFVRMDLR
Sbjct: 301 VITVFLVVSLALSYYKFVRMDLR 323
>pir||G71008 hypothetical protein PH1365 - Pyrococcus horikoshii
>gi|3257788|dbj|BAA30471.1| (AP000006) 310aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 315 bits (799), Expect = 4e-85
Identities = 161/326 (49%), Positives = 228/326 (69%), Gaps = 19/326 (5%)
Query: 1 MGLMTIAVKEFEVNIRTKRFYGTIAFFLILAVIFIRL---FNSVLPSHIYITPFQGILFG 57
M ++ IA+KE E I+TKRFYG + F L ++ R+ F + S ++TPFQ + F
Sbjct: 1 MTILNIAIKELESGIKTKRFYGILVLFGALTALYTRVMYNFALLSLSKAFVTPFQHLFFS 60
Query: 58 SFQTPLVYAITLVSILLGATAINSEINKGTIKVLYSKPIYRDTIIFGKLLGGTITIAFIL 117
+ + P VY++TL+++LLG T+INSEI KGTIK+LYSKPIYRDTI+ GK +GG + +A +
Sbjct: 61 AVEQPFVYSLTLIALLLGVTSINSEIEKGTIKILYSKPIYRDTILLGKFVGGFLILAISV 120
Query: 118 GILWVVMIGIALISGVPVSGYDVSRLLVLYMFSVLYGAALYALGMLLSTLIRSQTNSMLA 177
GI +++ IG+ALI GVP++GYD +RLL +Y+ S+LYG A+Y+LGML STLI+SQ N ++A
Sbjct: 121 GIFYLIAIGLALIVGVPITGYDATRLLTIYILSILYGLAIYSLGMLFSTLIKSQRNGIIA 180
Query: 178 GVFIFLLFAFIIPGILAPILALAFAGTPPTITYTPNASETSMFQSREMMEWMDRYVAVYM 237
G+ +FL+F +IP I+API+A AG PP AS+++ EW+++Y + +
Sbjct: 181 GIVLFLVFVIVIPMIIAPIVAFVIAG-PPNF-----ASDST--------EWLEKYSSTIL 226
Query: 238 KITSTSILYHYENLMRMVFGIKQTEDIVGQLSALLVSNDTSTWKISEERPIIEGIAMSLN 297
I S + +YHY+ +M MV+G K E+I+ QL LL+ N+T +K+ EERPIIEG M LN
Sbjct: 227 MIDSLTPVYHYQEIMNMVYGQKPQEEIMEQL-PLLMENETE-FKVVEERPIIEGFKMCLN 284
Query: 298 NIVVITVFLVVSLALSYYKFVRMDLR 323
NIV + V L VSL LSYYKF MDLR
Sbjct: 285 NIVAVLVTLFVSLGLSYYKFANMDLR 310
>pir||E71137 hypothetical protein PH0865 - Pyrococcus horikoshii
>gi|3257276|dbj|BAA29959.1| (AP000003) 322aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 322
Score = 212 bits (535), Expect = 4e-54
Identities = 119/329 (36%), Positives = 193/329 (58%), Gaps = 16/329 (4%)
Query: 1 MGLMTIAVKEFEVNIRTKRFYGTIAFFLILAV-IFIRLFNSVLPSHIYITPFQGILFGSF 59
M ++ + +K+FEV IRT+RF I F I+++ + L + + +Y TPFQ + SF
Sbjct: 1 MKVINVGMKDFEVGIRTRRFQVMIILFTIISLGMTYNLKRLGVSASLYKTPFQMLFLSSF 60
Query: 60 QTPLVYAITLVSILLGATAINSEINKGTIKVLYSKPIYRDTIIFGKLLGGTITIAFILGI 119
Y++ L+ ILLGAT IN E +GT++++ SKPIYRD I+ GK LGG + + LG+
Sbjct: 61 SNAFNYSVALLGILLGATTINGEKERGTLRIMASKPIYRDQILLGKFLGGALILGASLGL 120
Query: 120 LWVVMIGIALISGVPVSGYDVSRLLVLYMFSVLYGAALYALGMLLSTLIRSQTNSMLAGV 179
+++ I AL+ GV + DV L FS+LY ++LGML+ST+I+ N+++ G+
Sbjct: 121 FYILTIAFALLLGVTPNKDDVVMFLTTLPFSLLYALCFFSLGMLISTIIKKPKNAIVMGI 180
Query: 180 FIFLLFAFIIPGILAPILALAFAGTPPTITYTPNASETSMFQSREMM-------EWMDRY 232
FIF +F++P I+A ++ALA G PP + +AS + + +E++ EW++
Sbjct: 181 FIFAFLSFVLP-IIASVIALAVVGLPPIPSIPADASNLTEEELQELIIQDPSYQEWLNEL 239
Query: 233 VAVYMKITSTSILYHYENLMRMVFGIKQTEDIVGQLSALLVSNDTSTWKISEERPIIEGI 292
V I S YHY+ ++RM+FG K I +SAL I E+R I+E +
Sbjct: 240 VKTTEGILYISPNYHYQEIIRMIFGGK--PQISEVISALAYEE-----SIVEDRSILESL 292
Query: 293 AMSLNNIVVITVFLVVSLALSYYKFVRMD 321
++ NI+V+T+ ++ + LSY +FV+MD
Sbjct: 293 QLAWENILVLTIASMLFIGLSYMRFVKMD 321
>pir||C75122 hypothetical protein PAB1848 - Pyrococcus abyssi (strain Orsay)
>gi|5458203|emb|CAB49692.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 329
Score = 148 bits (369), Expect = 1e-34
Identities = 105/349 (30%), Positives = 168/349 (48%), Gaps = 51/349 (14%)
Query: 3 LMTIAVKEFEVNIRTKRFY---GTIAFFLILAVIFIRLFNSVLPSHI------------Y 47
+ +IA KE V ++TKRF T F+ L + F R + S S + Y
Sbjct: 4 IRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASGPVY 63
Query: 48 ITPFQGILFGSFQTPLVYAITLVSILLGATAINSEINKGTIKVLYSKPIYRDTIIFGKLL 107
+TP I + + + L ILLGA AIN EI +GTIKVL P+YRD ++ GK L
Sbjct: 64 MTPISSIFINNAMLFMFFGAFL-GILLGADAINREITRGTIKVLLGHPVYRDEVVNGKFL 122
Query: 108 GGTITIAFILGILWVVMIGIALISGVPVSGYDVSRLLVLYMFSVLYGAALYALGMLLSTL 167
G + + ++ I ++ I +ALI G+P+ G ++RLL+L + +LY +LG+++S+L
Sbjct: 123 GNALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMISSL 182
Query: 168 IRSQTNSMLAGVFIFLLFAFIIPGILAPILALAFAGTPP----TITYTPNASETSMFQSR 223
IRS +ML GV + + F FI P ++A ++A G P +T TS F R
Sbjct: 183 IRSPETAMLIGVGLVIFFIFIYP-LIASLIADRMVGPEPECYTIMTERVEIVGTSTFTYR 241
Query: 224 E--------MMEWMDRYVAVYMKITSTSILYHYENLMRMVF-GIKQTEDIVGQLSALLVS 274
E EW + A +I + + H+ LM F G ++ D +
Sbjct: 242 ESSNSCEDMYREWQEEKQAWEKRINMLNPVTHFAQLMIYTFAGDEEANDFL--------- 292
Query: 275 NDTSTWKISEERPIIEGIAMSLNNIVVITVFLVVSLALSYYKFVRMDLR 323
P+ E + +NN+ ++ V L+ +++Y +F+ DLR
Sbjct: 293 ------------PLSESLGYGINNLAILIVELLFPFSIAYMRFMTRDLR 329
>pir||C71009 hypothetical protein PH1369 - Pyrococcus horikoshii
>gi|3257792|dbj|BAA30475.1| (AP000006) 330aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 330
Score = 146 bits (364), Expect = 4e-34
Identities = 106/347 (30%), Positives = 170/347 (48%), Gaps = 50/347 (14%)
Query: 4 MTIAVKEFEVNIRTKRFY---GTIAFFLILAVIFIRLFNSVLPSHIYITPFQGILFGSFQ 60
+ IA KE ++TKRF T FL L V F R F+S +I G ++
Sbjct: 5 LNIASKELYTAVKTKRFIILLSTYLVFLFLTVYFSREFSSQDVGYISSMSIFGASGTVYR 64
Query: 61 TPL-----------VYAITLVSILLGATAINSEINKGTIKVLYSKPIYRDTIIFGKLLGG 109
TP+ + +L+ +LLGA AIN E++KGTIKVL P+YRD +I GK LG
Sbjct: 65 TPISSIFINNAMLWAFFGSLLGVLLGADAINRELSKGTIKVLLGHPVYRDQVINGKFLGN 124
Query: 110 TITIAFILGILWVVMIGIALISGVPVSGYDVSRLLVLYMFSVLYGAALYALGMLLSTLIR 169
+ + ++ + ++ I +ALI G+P+ G+ + RLLVL + +LY +LG+++S++IR
Sbjct: 125 ALALGIVIFVGFIFTIALALIFGIPMKGFSMVRLLVLSLVVLLYTLVFLSLGVMISSIIR 184
Query: 170 SQTNSMLAGVFIFLLFAFIIPGILAPILALAFAGTPP---------TITY---TPNASET 217
S +M+ G+ I L F + P ++A LA G P TIT T A ET
Sbjct: 185 SPETAMIVGIGISLFFIMVYP-MIASYLAGHMVGPMPECRATVVQRTITVGTETVIARET 243
Query: 218 SMFQSREM-MEWMDRYVAVYMKITSTSILYHYENLMRMVF-GIKQTEDIVGQLSALLVSN 275
+ E+ MEW + +I + H+ LM F G ++T D +
Sbjct: 244 TTEHCEEIYMEWYEEKQKWEKRINLLNPTMHFAQLMIYTFAGDEETRDYL---------- 293
Query: 276 DTSTWKISEERPIIEGIAMSLNNIVVITVFLVVSLALSYYKFVRMDL 322
P+ E ++ +NN+ ++ V L+ +++Y +F+ DL
Sbjct: 294 -----------PLGESLSYGINNLAILIVELLFPFSIAYARFMTKDL 329
>gi|11498737 A. fulgidus predicted coding region AF1137 [Archaeoglobus fulgidus]
>gi|7483557|pir||H69391 hypothetical protein AF1137 -
Archaeoglobus fulgidus >gi|2649454|gb|AAB90110.1|
(AE001025) A. fulgidus predicted coding region AF1137
[Archaeoglobus fulgidus]
Length = 297
Score = 85.8 bits (209), Expect = 6e-16
Identities = 75/325 (23%), Positives = 145/325 (44%), Gaps = 31/325 (9%)
Query: 1 MGLMTIAVKEFEVNIRTKRFYGTIAFFLILAVIFIRLFNSVLPSHIYITPFQGILFGSFQ 60
M + IA KEF + +KRF +A L+ ++F+ + S I I G L GS Q
Sbjct: 1 MKALIIAKKEFADIVTSKRFLALLAAMLLTYLLFVSQMSQF--STISIKAVFGFL-GS-Q 56
Query: 61 TPLVYAITLVSILLGATAINSEINKGTIKVLYSKPIYRDTIIFGKLLGGTITIAFILGIL 120
T + + ++ + +G I+ E GT++ L S P++RD I+ GK + I I+ +
Sbjct: 57 T-IAFVGGILGLAIGFDMISREKESGTLRTLLSHPVFRDEIVLGKAIAALAAICIIVLVT 115
Query: 121 WVVMIGIALISGVPVSGYDVSRLLVLYMFSVLYGAALYALGMLLSTLIRSQTNSMLAGVF 180
+ +IG++ G + D+ + + ++ Y ++++G+ S + +S T S+ +
Sbjct: 116 VMFIIGVSAFYGYIPAADDLGLIAKFALATIAYLFTMFSIGLFFSAVFKSSTTSLTVSLT 175
Query: 181 IFLLFAFIIPGILAPILALAFAGTPPTITYTPNASETSMFQSREMMEW---MDRYVAVYM 237
+F++ A +P I+A +A AG P + S+ +S E ++ + +
Sbjct: 176 LFVMLAIFVP-IMAYFIAGILAGPAPQPPVDFEKVDESVIESPEWQKYEEEREEHFRRIQ 234
Query: 238 KITSTSILYHYENLMRMVFGIKQTEDIVGQLSALLVSNDTSTWKISEERPIIEGIAMSLN 297
+IT T +L +N LVS+ +T + +P +
Sbjct: 235 EITQTILLISPQNSY-----------------TTLVSSFAATSEFMPFQP-----TDTTK 272
Query: 298 NIVVITVFLVVSLALSYYKFVRMDL 322
N + + ++ LSY +F R +L
Sbjct: 273 NALSFVILPLLLFTLSYVRFTREEL 297
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.144 0.409
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105205110
Number of Sequences: 2977
Number of extensions: 4218763
Number of successful extensions: 16422
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16406
Number of HSP's gapped (non-prelim): 6
length of query: 323
length of database: 189,106,746
effective HSP length: 55
effective length of query: 268
effective length of database: 156,189,961
effective search space: 41858909548
effective search space used: 41858909548
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)