BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1848 (PAB1848) DE:Hypothetical protein
(329 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75122 hypothetical protein PAB1848 - Pyrococcus abyssi (st... 643 0.0
pir||C71009 hypothetical protein PH1369 - Pyrococcus horikoshii ... 473 e-132
pir||F75122 hypothetical protein PAB1844 - Pyrococcus abyssi (st... 148 1e-34
pir||E71137 hypothetical protein PH0865 - Pyrococcus horikoshii ... 146 2e-34
pir||G71008 hypothetical protein PH1365 - Pyrococcus horikoshii ... 145 7e-34
gi|11498737 A. fulgidus predicted coding region AF1137 [Archaeog... 116 3e-25
dbj|BAB06932.1| (AP001518) unknown conserved protein in others [... 99 9e-20
gb|AAB69117.1| (U94899) NosY [Sinorhizobium meliloti] 80 4e-14
pir||T44663 nosY protein [imported] - Bradyrhizobium japonicum >... 71 1e-11
sp|P19845|NOSY_PSEST MEMBRANE PROTEIN NOSY PRECURSOR >gi|95002|p... 69 5e-11
gb|AAG20472.1| (AE005119) nitrite/nitrate reduction protein; Nos... 69 9e-11
>pir||C75122 hypothetical protein PAB1848 - Pyrococcus abyssi (strain Orsay)
>gi|5458203|emb|CAB49692.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 329
Score = 643 bits (1641), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MSAIRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASG 60
MSAIRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASG
Sbjct: 1 MSAIRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASG 60
Query: 61 PVYMTPISSIFINNAMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGK 120
PVYMTPISSIFINNAMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGK
Sbjct: 61 PVYMTPISSIFINNAMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGK 120
Query: 121 FLGNALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMIS 180
FLGNALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMIS
Sbjct: 121 FLGNALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMIS 180
Query: 181 SLIRSPETAMLIGVGLVIFFIFIYPLIASLIADRMVGPEPECYTIMTERVEIVGTSTFTY 240
SLIRSPETAMLIGVGLVIFFIFIYPLIASLIADRMVGPEPECYTIMTERVEIVGTSTFTY
Sbjct: 181 SLIRSPETAMLIGVGLVIFFIFIYPLIASLIADRMVGPEPECYTIMTERVEIVGTSTFTY 240
Query: 241 RESSNSCEDMYREWQEEKQAWEKRINMLNPVTHFAQLMIYTFAGDEEANDFLPLSESLGY 300
RESSNSCEDMYREWQEEKQAWEKRINMLNPVTHFAQLMIYTFAGDEEANDFLPLSESLGY
Sbjct: 241 RESSNSCEDMYREWQEEKQAWEKRINMLNPVTHFAQLMIYTFAGDEEANDFLPLSESLGY 300
Query: 301 GINNLAILIVELLFPFSIAYMRFMTRDLR 329
GINNLAILIVELLFPFSIAYMRFMTRDLR
Sbjct: 301 GINNLAILIVELLFPFSIAYMRFMTRDLR 329
>pir||C71009 hypothetical protein PH1369 - Pyrococcus horikoshii
>gi|3257792|dbj|BAA30475.1| (AP000006) 330aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 330
Score = 473 bits (1205), Expect = e-132
Identities = 231/329 (70%), Positives = 277/329 (83%), Gaps = 1/329 (0%)
Query: 1 MSAIRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASG 60
M A +IASKELY AVKTKRFII+L+TYL+F+FL +YF RE+ SQ + S+ GASG
Sbjct: 1 MGAELNIASKELYTAVKTKRFIILLSTYLVFLFLTVYFSREFSSQDVGYISSMSIFGASG 60
Query: 61 PVYMTPISSIFINNAMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGK 120
VY TPISSIFINNAML+ FFG+ LG+LLGADAINRE+++GTIKVLLGHPVYRD+V+NGK
Sbjct: 61 TVYRTPISSIFINNAMLWAFFGSLLGVLLGADAINRELSKGTIKVLLGHPVYRDQVINGK 120
Query: 121 FLGNALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMIS 180
FLGNALAL +VIF+GF+FTI+LALIFGIPM+G S+ RLL+LS+++LLYTLVFLSLG+MIS
Sbjct: 121 FLGNALALGIVIFVGFIFTIALALIFGIPMKGFSMVRLLVLSLVVLLYTLVFLSLGVMIS 180
Query: 181 SLIRSPETAMLIGVGLVIFFIFIYPLIASLIADRMVGPEPECYTIMTERVEIVGTSTFTY 240
S+IRSPETAM++G+G+ +FFI +YP+IAS +A MVGP PEC + +R VGT T
Sbjct: 181 SIIRSPETAMIVGIGISLFFIMVYPMIASYLAGHMVGPMPECRATVVQRTITVGTETVIA 240
Query: 241 RESSNS-CEDMYREWQEEKQAWEKRINMLNPVTHFAQLMIYTFAGDEEANDFLPLSESLG 299
RE++ CE++Y EW EEKQ WEKRIN+LNP HFAQLMIYTFAGDEE D+LPL ESL
Sbjct: 241 RETTTEHCEEIYMEWYEEKQKWEKRINLLNPTMHFAQLMIYTFAGDEETRDYLPLGESLS 300
Query: 300 YGINNLAILIVELLFPFSIAYMRFMTRDL 328
YGINNLAILIVELLFPFSIAY RFMT+DL
Sbjct: 301 YGINNLAILIVELLFPFSIAYARFMTKDL 329
>pir||F75122 hypothetical protein PAB1844 - Pyrococcus abyssi (strain Orsay)
>gi|5458206|emb|CAB49695.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 323
Score = 148 bits (369), Expect = 1e-34
Identities = 105/349 (30%), Positives = 168/349 (48%), Gaps = 51/349 (14%)
Query: 4 IRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASGPVY 63
+ +IA KE V ++TKRF T F+ L + F R + S S + Y
Sbjct: 3 LMTIAVKEFEVNIRTKRFY---GTIAFFLILAVIFIRLFNSVLPSHI------------Y 47
Query: 64 MTPISSIFINNAMLFMFFGAFL-GILLGADAINREITRGTIKVLLGHPVYRDEVVNGKFL 122
+TP I + + + L ILLGA AIN EI +GTIKVL P+YRD ++ GK L
Sbjct: 48 ITPFQGILFGSFQTPLVYAITLVSILLGATAINSEINKGTIKVLYSKPIYRDTIIFGKLL 107
Query: 123 GNALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMISSL 182
G + + ++ I ++ I +ALI G+P+ G ++RLL+L + +LY +LG+++S+L
Sbjct: 108 GGTITIAFILGILWVVMIGIALISGVPVSGYDVSRLLVLYMFSVLYGAALYALGMLLSTL 167
Query: 183 IRSPETAMLIGVGLVIFFIFIYP-LIASLIADRMVGPEPECYTIMTERVEIVGTSTFTYR 241
IRS +ML GV + + F FI P ++A ++A G P +T TS F R
Sbjct: 168 IRSQTNSMLAGVFIFLLFAFIIPGILAPILALAFAGTPP----TITYTPNASETSMFQSR 223
Query: 242 ESSNSCEDMYREWQEEKQAWEKRINMLNPVTHFAQLMIYTFAGDEEANDFL--------- 292
E EW + A +I + + H+ LM F G ++ D +
Sbjct: 224 E--------MMEWMDRYVAVYMKITSTSILYHYENLMRMVF-GIKQTEDIVGQLSALLVS 274
Query: 293 ------------PLSESLGYGINNLAILIVELLFPFSIAYMRFMTRDLR 329
P+ E + +NN+ ++ V L+ +++Y +F+ DLR
Sbjct: 275 NDTSTWKISEERPIIEGIAMSLNNIVVITVFLVVSLALSYYKFVRMDLR 323
>pir||E71137 hypothetical protein PH0865 - Pyrococcus horikoshii
>gi|3257276|dbj|BAA29959.1| (AP000003) 322aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 322
Score = 146 bits (366), Expect = 2e-34
Identities = 95/338 (28%), Positives = 168/338 (49%), Gaps = 37/338 (10%)
Query: 6 SIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASGPVYMT 65
++ K+ V ++T+RF +++ + + M Y + LG S +Y T
Sbjct: 5 NVGMKDFEVGIRTRRFQVMIILFTIISLGMTY--------------NLKRLGVSASLYKT 50
Query: 66 PISSIFINN-AMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGKFLGN 124
P +F+++ + F + A LGILLGA IN E RGT++++ P+YRD+++ GKFLG
Sbjct: 51 PFQMLFLSSFSNAFNYSVALLGILLGATTINGEKERGTLRIMASKPIYRDQILLGKFLGG 110
Query: 125 ALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMISSLIR 184
AL L + + ++ TI+ AL+ G+ + L LLY L F SLG++IS++I+
Sbjct: 111 ALILGASLGLFYILTIAFALLLGVTPNKDDVVMFLTTLPFSLLYALCFFSLGMLISTIIK 170
Query: 185 SPETAMLIGVGLVIFFIFIYPLIASLIADRMVGPEPECYTIMTERVEIVGTSTFTYRESS 244
P+ A+++G+ + F F+ P+IAS+IA +VG P +I + S T E
Sbjct: 171 KPKNAIVMGIFIFAFLSFVLPIIASVIALAVVG-LPPIPSIPAD------ASNLTEEELQ 223
Query: 245 NSC--EDMYREWQEEKQAWEKRINMLNPVTHFAQLMIYTFAGDEEANDFL---------- 292
+ Y+EW E + I ++P H+ +++ F G + ++ +
Sbjct: 224 ELIIQDPSYQEWLNELVKTTEGILYISPNYHYQEIIRMIFGGKPQISEVISALAYEESIV 283
Query: 293 ---PLSESLGYGINNLAILIVELLFPFSIAYMRFMTRD 327
+ ESL N+ +L + + ++YMRF+ D
Sbjct: 284 EDRSILESLQLAWENILVLTIASMLFIGLSYMRFVKMD 321
>pir||G71008 hypothetical protein PH1365 - Pyrococcus horikoshii
>gi|3257788|dbj|BAA30471.1| (AP000006) 310aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 310
Score = 145 bits (362), Expect = 7e-34
Identities = 106/346 (30%), Positives = 165/346 (47%), Gaps = 58/346 (16%)
Query: 4 IRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASGPVY 63
I +IA KEL +KTKRF IL +LF L + R V++ L + +
Sbjct: 3 ILNIAIKELESGIKTKRFYGIL---VLFGALTALYTR---------VMYNFALLSLSKAF 50
Query: 64 MTPISSIFINNA-MLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGKFL 122
+TP +F + F++ + +LLG +IN EI +GTIK+L P+YRD ++ GKF+
Sbjct: 51 VTPFQHLFFSAVEQPFVYSLTLIALLLGVTSINSEIEKGTIKILYSKPIYRDTILLGKFV 110
Query: 123 GNALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMISSL 182
G L L + + I ++ I LALI G+P+ G TRLL + IL +LY L SLG++ S+L
Sbjct: 111 GGFLILAISVGIFYLIAIGLALIVGVPITGYDATRLLTIYILSILYGLAIYSLGMLFSTL 170
Query: 183 IRSPETAMLIGVGLVIFFIFIYP-LIASLIADRMVGPEPECYTIMTERVEIVGTSTFTYR 241
I+S ++ G+ L + F+ + P +IA ++A + GP
Sbjct: 171 IKSQRNGIIAGIVLFLVFVIVIPMIIAPIVAFVIAGP----------------------- 207
Query: 242 ESSNSCEDMYREWQEEKQAWEKRINMLNPVTHFAQL--MIYTFAGDEEANDFLPL----- 294
N D EW E+ + I+ L PV H+ ++ M+Y EE + LPL
Sbjct: 208 --PNFASDS-TEWLEKYSSTILMIDSLTPVYHYQEIMNMVYGQKPQEEIMEQLPLLMENE 264
Query: 295 -----------SESLGYGINNLAILIVELLFPFSIAYMRFMTRDLR 329
E +NN+ ++V L ++Y +F DLR
Sbjct: 265 TEFKVVEERPIIEGFKMCLNNIVAVLVTLFVSLGLSYYKFANMDLR 310
>gi|11498737 A. fulgidus predicted coding region AF1137 [Archaeoglobus fulgidus]
>gi|7483557|pir||H69391 hypothetical protein AF1137 -
Archaeoglobus fulgidus >gi|2649454|gb|AAB90110.1|
(AE001025) A. fulgidus predicted coding region AF1137
[Archaeoglobus fulgidus]
Length = 297
Score = 116 bits (289), Expect = 3e-25
Identities = 86/326 (26%), Positives = 155/326 (47%), Gaps = 38/326 (11%)
Query: 7 IASKELYVAVKTKRFIIILA----TYLLFIFLMLYFEREWISQSKSSVVHQSMLGASGPV 62
IA KE V +KRF+ +LA TYLLF+ M F S++ +++ G G
Sbjct: 6 IAKKEFADIVTSKRFLALLAAMLLTYLLFVSQMSQF---------STISIKAVFGFLG-- 54
Query: 63 YMTPISSIFINNAMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGKFL 122
+ F G LG+ +G D I+RE GT++ LL HPV+RDE+V GK +
Sbjct: 55 ------------SQTIAFVGGILGLAIGFDMISREKESGTLRTLLSHPVFRDEIVLGKAI 102
Query: 123 GNALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMISSL 182
A+ +++ + MF I ++ +G + + ++ + Y S+G+ S++
Sbjct: 103 AALAAICIIVLVTVMFIIGVSAFYGYIPAADDLGLIAKFALATIAYLFTMFSIGLFFSAV 162
Query: 183 IRSPETAMLIGVGLVIFFIFIYPLIASLIADRMVGPEPECYTIMTERVEIVGTSTFTYRE 242
+S T++ + + L + P++A IA + GP P+ + E+V+ + +++
Sbjct: 163 FKSSTTSLTVSLTLFVMLAIFVPIMAYFIAGILAGPAPQ-PPVDFEKVDESVIESPEWQK 221
Query: 243 SSNSCEDMYREWQEEKQAWEKRINMLNPVTHFAQLMIYTFAGDEEANDFLPLSESLGYGI 302
E+ +R QE Q I +++P + L + +FA E F P +
Sbjct: 222 YEEEREEHFRRIQEITQT----ILLISPQNSYTTL-VSSFAATSEFMPFQPTDTTK---- 272
Query: 303 NNLAILIVELLFPFSIAYMRFMTRDL 328
N L+ +I+ LL F+++Y+RF +L
Sbjct: 273 NALSFVILPLLL-FTLSYVRFTREEL 297
>dbj|BAB06932.1| (AP001518) unknown conserved protein in others [Bacillus
halodurans]
Length = 345
Score = 98.7 bits (242), Expect = 9e-20
Identities = 94/328 (28%), Positives = 148/328 (44%), Gaps = 21/328 (6%)
Query: 6 SIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASGPVY-- 63
+I KE + + R II+L LL LY I + + +G + ++
Sbjct: 33 AIVRKEFTDFLSSWRIIILLGIILLTCVGSLYTAVTTIQDAINFYQDGGRIGRNSYLFLQ 92
Query: 64 MTPISSIFINNAMLFM-FFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGKFL 122
M IS + + + F+ F G LGI LG DAIN E ++GT+ L+ P+ RD V+N KF+
Sbjct: 93 MFTISDGNLPSFLSFVSFLGPLLGIALGFDAINSERSKGTLSRLMAQPIPRDYVINAKFV 152
Query: 123 GNA-LALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMISS 181
+ +VL I +G + LI GIP R++ L+L+Y +++L I+ S
Sbjct: 153 AALFINIVLFIALGMLVMAFGILILGIPPSIDEFLRVISFLFLILIYIAFWINLAILFSV 212
Query: 182 LIRSPETAMLIGVGLVIFFIFIYPLIASLIADRMVGPEPECYTIMTERVEIVGTSTFTYR 241
+ R T+ L + L +FF+ Y +I L+ + +E G ST Y
Sbjct: 213 IFRQQATSALSSMALWLFFLVFYSMIVKLLTN--------------SYLEEAG-STNEYV 257
Query: 242 ESSNSCEDMYREWQEEKQAWEKRINMLNPVTHFAQLMIYTFAGDEEANDFLPLSESLGYG 301
N+ ++YR + E +L+P LM A+ L L ESL
Sbjct: 258 SRYNAVLNIYR-FSPNYLFQESTTVLLSPTVRSTGLMTMEQVTGSIASP-LVLKESLLLI 315
Query: 302 INNLAILIVELLFPFSIAYMRFMTRDLR 329
L LI L F+IAY+ FM +++R
Sbjct: 316 WPQLTGLIAATLVCFAIAYVLFMRQEIR 343
>gb|AAB69117.1| (U94899) NosY [Sinorhizobium meliloti]
Length = 275
Score = 80.0 bits (194), Expect = 4e-14
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 28/219 (12%)
Query: 1 MSAIRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGA-- 58
MS I +IA KE+ ++ + +LAT LL L L S LG+
Sbjct: 1 MSNILTIAGKEIQEGMRNRW---VLATTLLLTALALTL---------------SFLGSVP 42
Query: 59 SGPVYMTPISSIFINNAMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVN 118
+G V + + + ++ + L +F + +LL DAI E+ RGT+ +LL +P+ R EVV
Sbjct: 43 TGSVGVDKLDVVIVSLSSLTIFLVPLIALLLSHDAIVGEMERGTMLLLLSYPIGRREVVC 102
Query: 119 GKFLGNALALVLVIFIGFMFTISLALIFGI---PMEGLSITRLLLLSILLLLYTLVFLSL 175
GKFLG+ L G+ + + G P + ++ SILL VF ++
Sbjct: 103 GKFLGHLAILAFATLFGYGAAAAALVATGSAVGPDSWQAFGSMIASSILL---GAVFAAI 159
Query: 176 GIMISSLIRSPETAMLIGVGLVIFFIFIY--PLIASLIA 212
G +ISS+ R TA I +G+ +FF+ IY L+ L+A
Sbjct: 160 GYLISSVARERATAGGIAIGIWLFFVLIYDMALLGGLVA 198
>pir||T44663 nosY protein [imported] - Bradyrhizobium japonicum
>gi|3850617|emb|CAA05522.1| (AJ002531) nosY
[Bradyrhizobium japonicum]
Length = 275
Score = 71.4 bits (172), Expect = 1e-11
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 22/218 (10%)
Query: 1 MSAIRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGAS- 59
M I IA+KE+ ++ + +LAT LL L L + LG++
Sbjct: 1 MRTIVIIAAKEIQEGLRNRW---VLATTLLLAALALSL---------------TFLGSAP 42
Query: 60 -GPVYMTPISSIFINNAMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVN 118
G V + + ++ + L +F + +L+ DA+ E+ RGT+ +LL +PV R +V+
Sbjct: 43 TGNVGAGALDVVVVSLSSLTIFLLPLIALLISHDAVVGEMERGTMTLLLSYPVGRGQVIL 102
Query: 119 GKFLGNALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIM 178
GKF G+ L L IG+ + G + S + ++ VF+++G +
Sbjct: 103 GKFCGHVLILAFATVIGYGAAAAALATTGASVLAASWYAFASMLGTSVMLGAVFVAVGYL 162
Query: 179 ISSLIRSPETA--MLIGVGLVIFFIFIYPLIASLIADR 214
ISSL+R TA + +GV L++ +F L+ L+ D+
Sbjct: 163 ISSLVRDRGTAAGISVGVWLLMVLVFDMALLGVLVVDQ 200
>sp|P19845|NOSY_PSEST MEMBRANE PROTEIN NOSY PRECURSOR >gi|95002|pir||S13585 nosY protein
precursor - Pseudomonas stutzeri
>gi|45850|emb|CAA37717.1| (X53676) nosY [Pseudomonas
stutzeri]
Length = 276
Score = 69.5 bits (167), Expect = 5e-11
Identities = 59/213 (27%), Positives = 103/213 (47%), Gaps = 27/213 (12%)
Query: 1 MSAIRSIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASG 60
M+ + +IA KEL ++ + +LA LLF L + W+ + ASG
Sbjct: 1 MNQVWNIARKELSDGLRNRW---LLAISLLFAVLAVGIA--WLGAA-----------ASG 44
Query: 61 PVYMTPISSIFINNAMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGK 120
+ T I + + A L F + +LL DAI E GT+ +LL +P+ R +++ GK
Sbjct: 45 QLGFTSIPATIASLASLATFLMPLIALLLAYDAIVGEDEGGTLMLLLTYPLGRGQILLGK 104
Query: 121 FLGNALALVLVIFIGFMFTISLALIFGIPMEGLSITRL------LLLSILLLLYTLVFLS 174
F+G+ L L L + IGF AL + +EG+ + L ++S LL + VFL+
Sbjct: 105 FVGHGLILALAVLIGFG---CAALAIALLVEGVELGMLFWAFGRFMISSTLLGW--VFLA 159
Query: 175 LGIMISSLIRSPETAMLIGVGLVIFFIFIYPLI 207
++S + +A + +G+ F+ ++ L+
Sbjct: 160 FAYVLSGKVNEKSSAAGLALGVWFLFVLVFDLV 192
>gb|AAG20472.1| (AE005119) nitrite/nitrate reduction protein; NosY [Halobacterium
sp. NRC-1]
Length = 265
Score = 68.7 bits (165), Expect = 9e-11
Identities = 57/208 (27%), Positives = 104/208 (49%), Gaps = 24/208 (11%)
Query: 6 SIASKELYVAVKTKRFIIILATYLLFIFLMLYFEREWISQSKSSVVHQSMLGASGPV-YM 64
+IA K+ AV++K + A +++F+ L + + ++V +L SGPV ++
Sbjct: 5 AIARKDFSDAVRSKALWALTALFVVFM-LGAAAGYGYFFDTTTAVDLLDLL--SGPVNFL 61
Query: 65 TPISSIFINNAMLFMFFGAFLGILLGADAINREITRGTIKVLLGHPVYRDEVVNGKFLGN 124
PI+++ L +I+ E+ GT K+LL P R +VV GK +G
Sbjct: 62 IPITAL-----------------LATIHSISGELESGTSKLLLSLPHTRRDVVIGKIVGR 104
Query: 125 ALALVLVIFIGFMFTISLALIFGIPMEGLSITRLLLLSILLLLYTLVFLSLGIMISSLIR 184
+ +++ +FIG M + A +F + + L ++ LL LV+ S+G+ +S+L R
Sbjct: 105 SAVMLIAVFIGVMS--AGAYVFAV-YTTVDAINYLGFAVFALLLALVYTSIGVGLSALAR 161
Query: 185 SPETAMLIGVGLVIFFIFIYPLIASLIA 212
S + +I G F++PLI S++A
Sbjct: 162 STSRSTIIAAGFYTLLSFVWPLILSVVA 189
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.144 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107803285
Number of Sequences: 2977
Number of extensions: 4299444
Number of successful extensions: 17888
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 17864
Number of HSP's gapped (non-prelim): 15
length of query: 329
length of database: 189,106,746
effective HSP length: 54
effective length of query: 275
effective length of database: 156,788,448
effective search space: 43116823200
effective search space used: 43116823200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)