BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1851 (PAB1851) DE:Hypothetical protein
         (247 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75121 hypothetical protein PAB1851 - Pyrococcus abyssi (st...   476  e-133
pir||G71009 hypothetical protein PH1373 - Pyrococcus horikoshii ...   392  e-108
emb|CAB38107.1| (AJ132781) alpha-glucosidase [Thermococcus hydro...   195  4e-49

>pir||H75121 hypothetical protein PAB1851 - Pyrococcus abyssi (strain Orsay)
           >gi|5458200|emb|CAB49689.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 247
           
 Score =  476 bits (1212), Expect = e-133
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MHYVKSPEILREVAENLEKAAEKLEKVKVLDEKKKEKLIKLLKDASRNFMELSANVEVDN 60
           MHYVKSPEILREVAENLEKAAEKLEKVKVLDEKKKEKLIKLLKDASRNFMELSANVEVDN
Sbjct: 1   MHYVKSPEILREVAENLEKAAEKLEKVKVLDEKKKEKLIKLLKDASRNFMELSANVEVDN 60

Query: 61  VEMAEFLRKRSVEIKNNCSDRDIERIGEKEFTNKIERMNLYSRTAFYDFQRSMLLKLKRF 120
           VEMAEFLRKRSVEIKNNCSDRDIERIGEKEFTNKIERMNLYSRTAFYDFQRSMLLKLKRF
Sbjct: 61  VEMAEFLRKRSVEIKNNCSDRDIERIGEKEFTNKIERMNLYSRTAFYDFQRSMLLKLKRF 120

Query: 121 YRAFIFGMALYFVLAGLSTRPELAITALILAIPTILAMLSLQRRGYTGLMLAYAVAPIPI 180
           YRAFIFGMALYFVLAGLSTRPELAITALILAIPTILAMLSLQRRGYTGLMLAYAVAPIPI
Sbjct: 121 YRAFIFGMALYFVLAGLSTRPELAITALILAIPTILAMLSLQRRGYTGLMLAYAVAPIPI 180

Query: 181 IQSAMLIRLFYSVVTNPEAIRKAAEALGKSEGFVVAYSYAVIVLSFVDFLLLSYGLYGLA 240
           IQSAMLIRLFYSVVTNPEAIRKAAEALGKSEGFVVAYSYAVIVLSFVDFLLLSYGLYGLA
Sbjct: 181 IQSAMLIRLFYSVVTNPEAIRKAAEALGKSEGFVVAYSYAVIVLSFVDFLLLSYGLYGLA 240

Query: 241 KHRDAFL 247
           KHRDAFL
Sbjct: 241 KHRDAFL 247


>pir||G71009 hypothetical protein PH1373 - Pyrococcus horikoshii
           >gi|3257796|dbj|BAA30479.1| (AP000006) 247aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 247
           
 Score =  392 bits (996), Expect = e-108
 Identities = 199/247 (80%), Positives = 225/247 (90%)

Query: 1   MHYVKSPEILREVAENLEKAAEKLEKVKVLDEKKKEKLIKLLKDASRNFMELSANVEVDN 60
           M+ VKSPEILREV+ENL+KA+EKLEKV VL+E KK K IKLL +AS+NF++LS+ VEVDN
Sbjct: 1   MYLVKSPEILREVSENLKKASEKLEKVGVLEENKKRKAIKLLTEASQNFLKLSSEVEVDN 60

Query: 61  VEMAEFLRKRSVEIKNNCSDRDIERIGEKEFTNKIERMNLYSRTAFYDFQRSMLLKLKRF 120
           V+MAEF RKRSVEIKNN +DR IERIGEKE+   +E+MNLYS+ AFYDF+RSMLL+LK+F
Sbjct: 61  VQMAEFFRKRSVEIKNNSTDRGIERIGEKEYMKSVEKMNLYSKAAFYDFKRSMLLELKKF 120

Query: 121 YRAFIFGMALYFVLAGLSTRPELAITALILAIPTILAMLSLQRRGYTGLMLAYAVAPIPI 180
           YR FIFGMALYFVL+GLSTRPELAITALILAIP IL+MLSLQRRGYTGLMLAYAV+PIPI
Sbjct: 121 YRLFIFGMALYFVLSGLSTRPELAITALILAIPAILSMLSLQRRGYTGLMLAYAVSPIPI 180

Query: 181 IQSAMLIRLFYSVVTNPEAIRKAAEALGKSEGFVVAYSYAVIVLSFVDFLLLSYGLYGLA 240
           IQSAMLIR+FYSVVTNPEAIRKAAEALGKS+ FVV YSY VI+LS +DF LLSYGLYGLA
Sbjct: 181 IQSAMLIRMFYSVVTNPEAIRKAAEALGKSQEFVVVYSYLVIILSLIDFGLLSYGLYGLA 240

Query: 241 KHRDAFL 247
           KHR AFL
Sbjct: 241 KHRYAFL 247


>emb|CAB38107.1| (AJ132781) alpha-glucosidase [Thermococcus hydrothermalis]
           Length = 242
           
 Score =  195 bits (491), Expect = 4e-49
 Identities = 104/244 (42%), Positives = 155/244 (62%), Gaps = 2/244 (0%)

Query: 4   VKSPEILREVAENLEKAAEKLEKVKVLDEKKKEKLIKLLKDASRNFMELSANVEVDNVEM 63
           +KS EILR+VA+ LE   +++  +K L +K K+K ++L+ ++  NF++LS  + VDN E+
Sbjct: 1   MKSAEILRDVAQTLEDVEKRINSLKNLSDKNKQKALRLIHESRENFLKLSETLAVDNEEL 60

Query: 64  AEFLRKRSVEIKNNCSDRDIERIGEKEFTNKIERMNLYSRTAFYDFQRSMLLKLKRFYRA 123
           A F  KR+V +KNN +D+ IE++GE+E+   +  MN YS+ A YDF   + + L+R Y A
Sbjct: 61  ANFFLKRAVRLKNNTTDKYIEKMGEREYMKDVTAMNKYSKVAPYDFAGEVKV-LRRAYFA 119

Query: 124 FIFGMALYFVLAGLSTRPELAITALILAIPTILAMLSLQRRGYTGLMLAYAVAPIPIIQS 183
           F+ GM  +++++G+   P  A TALIL IPT+LAMLSL++RG  GLML++AV PIP++  
Sbjct: 120 FLAGMVPFYIISGI-FGPMYAFTALILIIPTLLAMLSLRKRGNLGLMLSFAVMPIPMVMG 178

Query: 184 AMLIRLFYSVVTNPEAIRKAAEALGKSEGFVVAYSYAVIVLSFVDFLLLSYGLYGLAKHR 243
           A  IR       +P  + + AEA G+S  F       + VL     +LL Y  Y L KHR
Sbjct: 179 AFSIRYAIYAFNDPTELSRIAEAFGRSISFAQGVVAVIGVLGAAILILLGYASYMLYKHR 238

Query: 244 DAFL 247
            AFL
Sbjct: 239 HAFL 242


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.139    0.375 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75838826
Number of Sequences: 2977
Number of extensions: 2785918
Number of successful extensions: 22318
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22313
Number of HSP's gapped (non-prelim): 3
length of query: 247
length of database: 189,106,746
effective HSP length: 59
effective length of query: 188
effective length of database: 153,796,013
effective search space: 28913650444
effective search space used: 28913650444
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 164 (68.3 bits)