BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1853 (PAB1853) DE:Hypothetical protein
         (455 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75121 hypothetical protein PAB1853 - Pyrococcus abyssi (st...   874  0.0
pir||F71010 hypothetical protein PH1380 - Pyrococcus horikoshii ...   471  e-132

>pir||A75121 hypothetical protein PAB1853 - Pyrococcus abyssi (strain Orsay)
           >gi|5458193|emb|CAB49682.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 455
           
 Score =  874 bits (2234), Expect = 0.0
 Identities = 455/455 (100%), Positives = 455/455 (100%)

Query: 1   MAKRTVYFVFIFIAYTLGIWTFTLIPRILVGGGLTALALLTVASLIIGALVTMEVNEVKN 60
           MAKRTVYFVFIFIAYTLGIWTFTLIPRILVGGGLTALALLTVASLIIGALVTMEVNEVKN
Sbjct: 1   MAKRTVYFVFIFIAYTLGIWTFTLIPRILVGGGLTALALLTVASLIIGALVTMEVNEVKN 60

Query: 61  RPYKIHEFMTKFVKMPAISLVLLSFVIVVTAIDAHYTGLALSRIIGAKIPFVGIVAIILA 120
           RPYKIHEFMTKFVKMPAISLVLLSFVIVVTAIDAHYTGLALSRIIGAKIPFVGIVAIILA
Sbjct: 61  RPYKIHEFMTKFVKMPAISLVLLSFVIVVTAIDAHYTGLALSRIIGAKIPFVGIVAIILA 120

Query: 121 LALLIGMRTRSLDFIVGSSILTMILIMAGALFLKRQADMYIIDEIPRLTVQGIIDSIKGF 180
           LALLIGMRTRSLDFIVGSSILTMILIMAGALFLKRQADMYIIDEIPRLTVQGIIDSIKGF
Sbjct: 121 LALLIGMRTRSLDFIVGSSILTMILIMAGALFLKRQADMYIIDEIPRLTVQGIIDSIKGF 180

Query: 181 TTGINFLQTEIIFMVALLVFGLGVGFYYVIGGPLARLGVDVRKVVIGTIGLQLILSIVAL 240
           TTGINFLQTEIIFMVALLVFGLGVGFYYVIGGPLARLGVDVRKVVIGTIGLQLILSIVAL
Sbjct: 181 TTGINFLQTEIIFMVALLVFGLGVGFYYVIGGPLARLGVDVRKVVIGTIGLQLILSIVAL 240

Query: 241 LTVAYSIGIAYQGYWNAYSMGSDVQFLMIQKEYWGPLYDEYIQRGEIMRPKYTIESLYSI 300
           LTVAYSIGIAYQGYWNAYSMGSDVQFLMIQKEYWGPLYDEYIQRGEIMRPKYTIESLYSI
Sbjct: 241 LTVAYSIGIAYQGYWNAYSMGSDVQFLMIQKEYWGPLYDEYIQRGEIMRPKYTIESLYSI 300

Query: 301 PNMLRDLNIEGSTKTILALMGSFFLAGFTTLLVLLETGGQLVMDVFQVTRRQGILWASIL 360
           PNMLRDLNIEGSTKTILALMGSFFLAGFTTLLVLLETGGQLVMDVFQVTRRQGILWASIL
Sbjct: 301 PNMLRDLNIEGSTKTILALMGSFFLAGFTTLLVLLETGGQLVMDVFQVTRRQGILWASIL 360

Query: 361 SSVMAILVYFEQLRMILLGTLLGTTALIGLVEFLPVIKLRKSATSYILAGLILLLGIGTI 420
           SSVMAILVYFEQLRMILLGTLLGTTALIGLVEFLPVIKLRKSATSYILAGLILLLGIGTI
Sbjct: 361 SSVMAILVYFEQLRMILLGTLLGTTALIGLVEFLPVIKLRKSATSYILAGLILLLGIGTI 420

Query: 421 AATFQFGGYYRLGILVGLMLLLPLGFNNMLLKTKS 455
           AATFQFGGYYRLGILVGLMLLLPLGFNNMLLKTKS
Sbjct: 421 AATFQFGGYYRLGILVGLMLLLPLGFNNMLLKTKS 455


>pir||F71010 hypothetical protein PH1380 - Pyrococcus horikoshii
           >gi|3257803|dbj|BAA30486.1| (AP000006) 442aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 442
           
 Score =  471 bits (1199), Expect = e-132
 Identities = 234/442 (52%), Positives = 324/442 (72%), Gaps = 4/442 (0%)

Query: 17  LGIWTFTLIPRILVGGGLTALALLTVASLIIGALVTMEVNEVKNRPYKIHEFMTKFVKMP 76
           +GIWTFTL+P+IL+ GGLT L L+   S II  +V +E+ E+KNRPY+IHEFMTKFVK P
Sbjct: 2   IGIWTFTLVPKILIMGGLTGLLLILTFSGIISGIVALEIYEIKNRPYRIHEFMTKFVKTP 61

Query: 77  AISLVLLSFVIVVTAIDAHYTGLALSRIIGAKIPFVGIVAIILALALLIGMRTRSLDFIV 136
           +IS++LLSF+ +VT+I AHYTG+++  ++   IP VGI+ I L + LL+  R+RSLD IV
Sbjct: 62  SISIILLSFLFIVTSITAHYTGMSIESMVNTPIPGVGILVIFLGMLLLVLTRSRSLDIIV 121

Query: 137 GSSILTMILIMAGALFLKRQADMYIIDEIPRLTVQGIIDSIKGFTTGINFLQTEIIFMVA 196
            SS+LT++LI+ G LFL+ QA+  +  ++ R  +  +  ++K F   I+ L+ E  F+++
Sbjct: 122 VSSVLTVVLIITGMLFLRNQAESIVNTQLSRSFISNVFTAVKSFNINISLLEVEYAFIIS 181

Query: 197 LLVFGLGVGFYYVIGGPLARLGVDVRKVVIGTIGLQLILSIVALLTVAYSIGIAYQGYWN 256
           +L+FGLG+GFYY+IGGPLA L VDVRKV+I TI +Q+I+S VA+ T+AYS+GIA+Q + +
Sbjct: 182 VLIFGLGMGFYYIIGGPLATLKVDVRKVIIVTILIQVIISFVAVATLAYSVGIAHQAFRD 241

Query: 257 AYSMGSDVQFLMIQKEYWGPLYDEYIQRGEIMRPKYTIESLYSIPNMLRDLNIEGSTKTI 316
           A+  G   + L + +EY+ PL++EY +R E   PK  IESLY+IPNMLRDL ++GS   I
Sbjct: 242 AFMKGKAKEALEVYREYFNPLWEEY-RRSEGFNPKVAIESLYNIPNMLRDLKMKGSLGII 300

Query: 317 LALMGSFFLAGFTTLLVLLETGGQLVMDVFQVTRRQGILWASILSSVMAILVYFEQLRMI 376
           ++LMGS FLAGFTT+LVLLE GGQL+MD+FQV RR GI   ++LSS+ A   Y   LR+I
Sbjct: 301 VSLMGSIFLAGFTTVLVLLEIGGQLIMDIFQVNRRTGITIVALLSSLFAGFAYLNPLRVI 360

Query: 377 LLGTLLGTTALIGLVEFLPVIKLRKSATSYILAGLILLLGIGTIAATFQFGG-YYRLGIL 435
           LL T++    LIG +EF PV+KLR S  SY+L  ++L+ GI  I A  QF   YY LG++
Sbjct: 361 LLSTVISIMPLIGFIEFYPVMKLRSSLISYVLGSILLIFGIADIVAILQFKNYYYELGVI 420

Query: 436 VGLMLLLPLGFNNMLLK--TKS 455
           VGLMLL+PL FN +L+K  TKS
Sbjct: 421 VGLMLLIPLAFNKLLIKPTTKS 442


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.147    0.420 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144378108
Number of Sequences: 2977
Number of extensions: 5767507
Number of successful extensions: 26520
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26516
Number of HSP's gapped (non-prelim): 2
length of query: 455
length of database: 189,106,746
effective HSP length: 54
effective length of query: 401
effective length of database: 156,788,448
effective search space: 62872167648
effective search space used: 62872167648
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 167 (69.5 bits)