BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1858 715682 715341 -114 !not a gene!
         (114 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71011 hypothetical protein PH1388 - Pyrococcus horikoshii ...   143  5e-34

>pir||F71011 hypothetical protein PH1388 - Pyrococcus horikoshii
          >gi|3257811|dbj|BAA30494.1| (AP000006) 119aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 119
          
 Score =  143 bits (357), Expect = 5e-34
 Identities = 76/87 (87%), Positives = 80/87 (91%)

Query: 1  MPSSSIPIACFFAHTPSLIFLSAKAIFLATANIKATANSATLLELAAGAFTTSIPLSLAA 60
          +PSSSIPIA FFAHTPSLIFLSAKAIFLAT NI  TA+SATLLELAAGA TTSIP SLAA
Sbjct: 6  LPSSSIPIASFFAHTPSLIFLSAKAIFLATENINPTASSATLLELAAGALTTSIPFSLAA 65

Query: 61 STSILSRPTPALAITLSFGALSITFLV 87
          STS+LS+PTPALAITLSFGALSIT LV
Sbjct: 66 STSMLSKPTPALAITLSFGALSITLLV 92


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.130    0.350 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24562628
Number of Sequences: 2977
Number of extensions: 624187
Number of successful extensions: 3351
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3350
Number of HSP's gapped (non-prelim): 1
length of query: 114
length of database: 189,106,746
effective HSP length: 59
effective length of query: 55
effective length of database: 153,796,013
effective search space: 8458780715
effective search space used: 8458780715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 159 (66.3 bits)