BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1860 (PAB1860) DE:Hypothetical protein
(266 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75119 hypothetical protein PAB1860 - Pyrococcus abyssi (st... 513 e-145
pir||B71012 hypothetical protein PH1392 - Pyrococcus horikoshii ... 376 e-103
sp|Q57958|Y538_METJA HYPOTHETICAL PROTEIN MJ0538 >gi|2128364|pir... 82 7e-15
>pir||F75119 hypothetical protein PAB1860 - Pyrococcus abyssi (strain Orsay)
>gi|5458182|emb|CAB49671.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 266
Score = 513 bits (1307), Expect = e-145
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MVEITVNFYIEAAGNDKKAVETSISEIAEKLRGENVQILELNIEDPVETDDPKARYSAMM 60
MVEITVNFYIEAAGNDKKAVETSISEIAEKLRGENVQILELNIEDPVETDDPKARYSAMM
Sbjct: 1 MVEITVNFYIEAAGNDKKAVETSISEIAEKLRGENVQILELNIEDPVETDDPKARYSAMM 60
Query: 61 EAKIRGELGEIVNLILRYGPTIVELEDMKEREIRADELVKILALVSKVMGELMEKFGPLA 120
EAKIRGELGEIVNLILRYGPTIVELEDMKEREIRADELVKILALVSKVMGELMEKFGPLA
Sbjct: 61 EAKIRGELGEIVNLILRYGPTIVELEDMKEREIRADELVKILALVSKVMGELMEKFGPLA 120
Query: 121 IYPDLSNVPEPRIGYSEDEIAKMIIDEGMIRYQFVIEVFGKDKDSVESSIKKALAIEGCY 180
IYPDLSNVPEPRIGYSEDEIAKMIIDEGMIRYQFVIEVFGKDKDSVESSIKKALAIEGCY
Sbjct: 121 IYPDLSNVPEPRIGYSEDEIAKMIIDEGMIRYQFVIEVFGKDKDSVESSIKKALAIEGCY 180
Query: 181 INKIASKVLKEENINSEKRVKVLIALELLSNFEVLFNLTAKYSPVAIVMLEPEFVDINPT 240
INKIASKVLKEENINSEKRVKVLIALELLSNFEVLFNLTAKYSPVAIVMLEPEFVDINPT
Sbjct: 181 INKIASKVLKEENINSEKRVKVLIALELLSNFEVLFNLTAKYSPVAIVMLEPEFVDINPT 240
Query: 241 ELQNALSGLATLVNELIHRPLLIANQ 266
ELQNALSGLATLVNELIHRPLLIANQ
Sbjct: 241 ELQNALSGLATLVNELIHRPLLIANQ 266
>pir||B71012 hypothetical protein PH1392 - Pyrococcus horikoshii
>gi|3257815|dbj|BAA30498.1| (AP000006) 293aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 293
Score = 376 bits (956), Expect = e-103
Identities = 179/263 (68%), Positives = 227/263 (86%)
Query: 1 MVEITVNFYIEAAGNDKKAVETSISEIAEKLRGENVQILELNIEDPVETDDPKARYSAMM 60
MV +TVNFYIEAAGND+KAVETSI EI +KL+ EN+ I+E+N EDP+ET+DP A+YSA++
Sbjct: 29 MVSLTVNFYIEAAGNDRKAVETSILEIEKKLKEENISIVEINREDPIETEDPNAKYSAVL 88
Query: 61 EAKIRGELGEIVNLILRYGPTIVELEDMKEREIRADELVKILALVSKVMGELMEKFGPLA 120
E K+RGELGEIV LI+RYGP+IVE+ED+KEREI A+ELVKILAL+SK MG LMEKFG LA
Sbjct: 89 EVKLRGELGEIVTLIMRYGPSIVEVEDVKEREISAEELVKILALISKFMGGLMEKFGGLA 148
Query: 121 IYPDLSNVPEPRIGYSEDEIAKMIIDEGMIRYQFVIEVFGKDKDSVESSIKKALAIEGCY 180
YPDLS PEPR+GYSEDEI +MII+EG+IRYQFVIE +GKD++ +E ++KKAL +EGCY
Sbjct: 149 AYPDLSAFPEPRVGYSEDEIERMIINEGLIRYQFVIEAYGKDREEIEVNMKKALTLEGCY 208
Query: 181 INKIASKVLKEENINSEKRVKVLIALELLSNFEVLFNLTAKYSPVAIVMLEPEFVDINPT 240
INK AS++++E++ KR+K+LIA ELLS+ E LF LTAKY+P+ I+++EP+ +DI P
Sbjct: 209 INKFASQIIEEKDEGDLKRIKMLIASELLSSVETLFTLTAKYAPIGIIIIEPDIIDIKPN 268
Query: 241 ELQNALSGLATLVNELIHRPLLI 263
ELQNALS LA ++NELIHRPLLI
Sbjct: 269 ELQNALSELAAMINELIHRPLLI 291
>sp|Q57958|Y538_METJA HYPOTHETICAL PROTEIN MJ0538 >gi|2128364|pir||B64367 hypothetical
protein MJ0538 - Methanococcus jannaschii
>gi|1591242|gb|AAB98536.1| (U67503) M. jannaschii
predicted coding region MJ0538 [Methanococcus
jannaschii]
Length = 260
Score = 81.9 bits (199), Expect = 7e-15
Identities = 72/265 (27%), Positives = 134/265 (50%), Gaps = 14/265 (5%)
Query: 4 ITVNFYIEAAGNDKKAVETSISEIAEKLRGENVQILELNIEDPVETDDPKARYSAMMEAK 63
I ++ E GN K+ VE +A +L+ + L+ +++ +E D+ Y+ + E +
Sbjct: 2 IKIHALEEVKGNSKEIVEKEFENLANELKEKYNAKLKY-VDEDIEEDENLKFYTKIGEFE 60
Query: 64 IRGE-LGEIVNLILRYGPTIVELEDMKEREIRADELVKILALVSKVMGELMEKFG-PLAI 121
I + + +N L+YG I E+ ++ ++ A+E+ ++LALV M+ + +
Sbjct: 61 INFDNFKDYINFCLKYGADI-EVIKPEKLKLTANEINEVLALVISAFKSFMDTYKIGFDV 119
Query: 122 Y----PDLSNVPEPRIGYSEDEIAKMIIDEGMIRYQFVIEVFGKDKDSVESSIKKALAIE 177
Y D+ + Y EDEIA +EG IR + V E GK+++ V ++ +L +
Sbjct: 120 YVKEKKDIDVEGYKKGKYDEDEIADFE-EEGFIRVKAVFEAIGKNENEVVKNLLISLDRD 178
Query: 178 GCYINKIASKVLKEENINSEKRVKVLIALELLSNFEVLFNLTAKYSPVAIVMLEPEFVDI 237
INKI +K E N N L+A++LL N +F + KY PVAI + E +++
Sbjct: 179 EIIINKIITKNFNENNEN----FNGLMAVDLLCNPFEMFEIAYKYLPVAISIQRDE-IEL 233
Query: 238 NPTELQNALSGLATLVNELIHRPLL 262
+ ++Q+ + L+ + EL H ++
Sbjct: 234 SLADIQDIGNELSGAMFELSHAVIM 258
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.360
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85445697
Number of Sequences: 2977
Number of extensions: 3328766
Number of successful extensions: 8078
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8074
Number of HSP's gapped (non-prelim): 3
length of query: 266
length of database: 189,106,746
effective HSP length: 61
effective length of query: 205
effective length of database: 152,599,039
effective search space: 31282802995
effective search space used: 31282802995
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 164 (68.3 bits)