BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1861 (PAB1861) DE:Hypothetical protein
(604 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75119 hypothetical protein PAB1861 - Pyrococcus abyssi (st... 1211 0.0
pir||D71012 hypothetical protein PH1394 - Pyrococcus horikoshii ... 423 e-117
pir||E71012 hypothetical protein PH1395 - Pyrococcus horikoshii ... 386 e-106
pir||F64402 vanadate-senstive ATPase homolog - Methanococcus jan... 121 3e-26
>pir||E75119 hypothetical protein PAB1861 - Pyrococcus abyssi (strain Orsay)
>gi|5458181|emb|CAB49670.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 604
Score = 1211 bits (3098), Expect = 0.0
Identities = 604/604 (100%), Positives = 604/604 (100%)
Query: 1 MEVFDMKVKKIAALAVGAAVAGATLGLASAQPQVPEIPKDFFVKDGEPNVKIVVGSEGAA 60
MEVFDMKVKKIAALAVGAAVAGATLGLASAQPQVPEIPKDFFVKDGEPNVKIVVGSEGAA
Sbjct: 1 MEVFDMKVKKIAALAVGAAVAGATLGLASAQPQVPEIPKDFFVKDGEPNVKIVVGSEGAA 60
Query: 61 MDVVSAADIAAAIGSLLYTEKEVKVSDVSVVVRKDITYDPDDIPVFNNFYPNKNQVFIVG 120
MDVVSAADIAAAIGSLLYTEKEVKVSDVSVVVRKDITYDPDDIPVFNNFYPNKNQVFIVG
Sbjct: 61 MDVVSAADIAAAIGSLLYTEKEVKVSDVSVVVRKDITYDPDDIPVFNNFYPNKNQVFIVG 120
Query: 121 QDSLKDVEAWWNGSAFSANYTASVWNGGTYSGTYSLELENVANYGKYDLTGELTLKGITL 180
QDSLKDVEAWWNGSAFSANYTASVWNGGTYSGTYSLELENVANYGKYDLTGELTLKGITL
Sbjct: 121 QDSLKDVEAWWNGSAFSANYTASVWNGGTYSGTYSLELENVANYGKYDLTGELTLKGITL 180
Query: 181 EEIANNEVNFKDIEDFKDMTVKINSAVLNITLAVYNWTKTVKAKDPITGVTTTKVKWTLS 240
EEIANNEVNFKDIEDFKDMTVKINSAVLNITLAVYNWTKTVKAKDPITGVTTTKVKWTLS
Sbjct: 181 EEIANNEVNFKDIEDFKDMTVKINSAVLNITLAVYNWTKTVKAKDPITGVTTTKVKWTLS 240
Query: 241 NVQPGAGYSISDTISKGVGEGVTLKVFDKEFPIIFVGKAISKNAIVDAADSFVYGTYHGT 300
NVQPGAGYSISDTISKGVGEGVTLKVFDKEFPIIFVGKAISKNAIVDAADSFVYGTYHGT
Sbjct: 241 NVQPGAGYSISDTISKGVGEGVTLKVFDKEFPIIFVGKAISKNAIVDAADSFVYGTYHGT 300
Query: 301 DFYDQGQEVEFDGYKVEILDIDIQRNKALLKITSPSGDETTDTISKDGKVHVYFGGGIAI 360
DFYDQGQEVEFDGYKVEILDIDIQRNKALLKITSPSGDETTDTISKDGKVHVYFGGGIAI
Sbjct: 301 DFYDQGQEVEFDGYKVEILDIDIQRNKALLKITSPSGDETTDTISKDGKVHVYFGGGIAI 360
Query: 361 QLLDTFVGVAGTNTVQLKVYTNLKTMKSGKEFMPGWKAEFAIDANNKVIKWFALVNEDPL 420
QLLDTFVGVAGTNTVQLKVYTNLKTMKSGKEFMPGWKAEFAIDANNKVIKWFALVNEDPL
Sbjct: 361 QLLDTFVGVAGTNTVQLKVYTNLKTMKSGKEFMPGWKAEFAIDANNKVIKWFALVNEDPL 420
Query: 421 EGKEIKLFDTYTIDYSGTVKTKEVGKIEYAVLKAYIYIDPIEREYKDITLTKGDEIEDTE 480
EGKEIKLFDTYTIDYSGTVKTKEVGKIEYAVLKAYIYIDPIEREYKDITLTKGDEIEDTE
Sbjct: 421 EGKEIKLFDTYTIDYSGTVKTKEVGKIEYAVLKAYIYIDPIEREYKDITLTKGDEIEDTE 480
Query: 481 YYIGDINVEFKPKETYIPKKLTEPITVLDTEIMEQGLENVDSNLILVGGPVVNKVAAALA 540
YYIGDINVEFKPKETYIPKKLTEPITVLDTEIMEQGLENVDSNLILVGGPVVNKVAAALA
Sbjct: 481 YYIGDINVEFKPKETYIPKKLTEPITVLDTEIMEQGLENVDSNLILVGGPVVNKVAAALA 540
Query: 541 DDLGVPKTYDEWKEKFGTGAESAQIIYKEKCGKIGGYGVLLVAGTDREGTRAAAEALLEY 600
DDLGVPKTYDEWKEKFGTGAESAQIIYKEKCGKIGGYGVLLVAGTDREGTRAAAEALLEY
Sbjct: 541 DDLGVPKTYDEWKEKFGTGAESAQIIYKEKCGKIGGYGVLLVAGTDREGTRAAAEALLEY 600
Query: 601 ISKL 604
ISKL
Sbjct: 601 ISKL 604
>pir||D71012 hypothetical protein PH1394 - Pyrococcus horikoshii
>gi|3257817|dbj|BAA30500.1| (AP000006) 315aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 315
Score = 423 bits (1075), Expect = e-117
Identities = 213/298 (71%), Positives = 240/298 (80%), Gaps = 7/298 (2%)
Query: 1 MEVFDMKVKKIAALAVGAAVAGATLGLASAQPQVPEIPKDFFVKDGEPNVKIVVGSEGAA 60
MEVFDMKVKKIAALAVGAAVAGATLGLASAQP+VP +PKDFFVKDGEPNVKIVVGSEGAA
Sbjct: 1 MEVFDMKVKKIAALAVGAAVAGATLGLASAQPEVPSVPKDFFVKDGEPNVKIVVGSEGAA 60
Query: 61 MDVVSAADIAAAIGSLLYTEKEVKVSDVSVVVRKDITYDPDDIPVFNNFYPNKNQVFIVG 120
MDVVSAADIAAAIGSLLYTEK+V+VSDVSVVV+KDIT DP+DIPVFNNFYP+ +QVF G
Sbjct: 61 MDVVSAADIAAAIGSLLYTEKDVEVSDVSVVVKKDITDDPEDIPVFNNFYPDSDQVFKEG 120
Query: 121 QDSLKDVEAWWNGS-------AFSANYTASVWNGGTYSGTYSLELENVANYGKYDLTGEL 173
D L + AWWNG F+ + + S W GTYSG Y LEL+NVA+Y Y+LTG L
Sbjct: 121 TDELDKIPAWWNGGYDEDGNPVFNEDLSHSAWADGTYSGPYELELDNVASYDDYELTGIL 180
Query: 174 TLKGITLEEIANNEVNFKDIEDFKDMTVKINSAVLNITLAVYNWTKTVKAKDPITGVTTT 233
TLK ITL+EIA EV++KDI DFKD+TV I+S VLN TL VYNWTKT KDP+TG TT
Sbjct: 181 TLKNITLKEIAEKEVDWKDINDFKDLTVVIDSVVLNTTLEVYNWTKTETEKDPVTGEETT 240
Query: 234 KVKWTLSNVQPGAGYSISDTISKGVGEGVTLKVFDKEFPIIFVGKAISKNAIVDAADS 291
KW +SNVQPG+GYSI +T+S+G G TLKV DKEFPI+FVGKAI IVD DS
Sbjct: 241 VTKWEISNVQPGSGYSIKETVSEGATAGETLKVLDKEFPIVFVGKAIKSGQIVDQEDS 298
>pir||E71012 hypothetical protein PH1395 - Pyrococcus horikoshii
>gi|3257818|dbj|BAA30501.1| (AP000006) 236aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 236
Score = 386 bits (981), Expect = e-106
Identities = 189/238 (79%), Positives = 210/238 (87%), Gaps = 2/238 (0%)
Query: 367 VGVAGTNTVQLKVYTNLKTMKSGKEFMPGWKAEFAIDANNKVIKWFALVNEDPLEGKEIK 426
+G+AGTNTV+L+VYTNLKT KSG E GW A+F D + IKWFA+ NED LEGKEIK
Sbjct: 1 MGIAGTNTVRLQVYTNLKTFKSGDEISDGWVAKFHTDGD--YIKWFAIENEDSLEGKEIK 58
Query: 427 LFDTYTIDYSGTVKTKEVGKIEYAVLKAYIYIDPIEREYKDITLTKGDEIEDTEYYIGDI 486
LFDTY +DY+GT+K KE GK+ YAVLKAY+ IDP+ER+YK++TL GDEIEDT Y I D+
Sbjct: 59 LFDTYKVDYTGTIKEKEKGKVTYAVLKAYVAIDPLERQYKELTLGIGDEIEDTAYSIKDV 118
Query: 487 NVEFKPKETYIPKKLTEPITVLDTEIMEQGLENVDSNLILVGGPVVNKVAAALADDLGVP 546
+VEF+PKETYIPKKLTEPITVLDTEIMEQGLENVDSNLILVGGPVVNKV AALA+DLGVP
Sbjct: 119 DVEFEPKETYIPKKLTEPITVLDTEIMEQGLENVDSNLILVGGPVVNKVTAALAEDLGVP 178
Query: 547 KTYDEWKEKFGTGAESAQIIYKEKCGKIGGYGVLLVAGTDREGTRAAAEALLEYISKL 604
TYDEWKEKFGTGA+S QIIYKEKC KIGGYGVLLVAGTDREGTRAAAEALLEYISKL
Sbjct: 179 TTYDEWKEKFGTGADSGQIIYKEKCSKIGGYGVLLVAGTDREGTRAAAEALLEYISKL 236
>pir||F64402 vanadate-senstive ATPase homolog - Methanococcus jannaschii
>gi|1591510|gb|AAB98821.1| (U67526) S-layer structural
protein [Methanococcus jannaschii]
Length = 558
Score = 121 bits (300), Expect = 3e-26
Identities = 174/642 (27%), Positives = 266/642 (41%), Gaps = 136/642 (21%)
Query: 6 MKVKKIAALAVGAAVAGATL--GLA-----SAQPQVPEIPKDFFVKDGEPNVKIVVGSEG 58
M +KKI A+AVG A+ L G+A S E+ KD VKDG+PN +VVG++
Sbjct: 3 MSLKKIGAIAVGGAMVATALASGVAAEVTTSGFSDYKEL-KDILVKDGQPNCYVVVGADA 61
Query: 59 -AAMDVVSAADIAAAIGSLLYTEKEVKVSDVSVVVRKDITYDPDDIPVFNNFYPNKNQVF 117
+ MDVVSAADIAA IGSL Y E V+ + V + D D+
Sbjct: 62 PSTMDVVSAADIAAKIGSLCYKEGTVEDGSADITVHAEANSDDFDLK------------- 108
Query: 118 IVGQDSLKDVEAWWNGSAFSAN-YTASVWNGGTYSGTYSLELENVANYGKYDLTGEL--- 173
KD WN SA AN Y V G YS + EN + G L
Sbjct: 109 -------KD----WNNSAMPANAYALFV---AASDGDYSEKFENDTGKPSFMDNGVLGDA 154
Query: 174 --TLKGITLEEIANN-EVNFKDIEDFKDMTVKINSAVLNITLAVYNWTKTVKAKDPITGV 230
K + L +IA +V+ D D+ D V+ V+ K+ +
Sbjct: 155 DKINKTVDLGDIATMMKVDDVDPSDWYDSDDDAGEIVM------------VELKNDTSDG 202
Query: 231 TTTKVKWTLSNVQPGAGYSISDTISKGVGEGVTLKVFDKEFPIIFVGKAISKNAIVDAAD 290
T K L + + + EG+ + KE ++ + K +AI
Sbjct: 203 FTVYKKNMLYETLVYKDDEENFANTTKMEEGMRIPFLGKEMVVVDIDK--DDDAI----- 255
Query: 291 SFVYGTYHGTDFYD----QGQEVEF-DGYKVEILDIDIQRNKALLKITSPSGD--ETTDT 343
Y GT YD +G+ + +GY+V+I KA+LK T + D +
Sbjct: 256 ------YLGTPVYDGIIKEGETYDLGNGYQVKI--------KAILKTTVNNTDVYKVDVQ 301
Query: 344 ISKDGKV----------HVYFGGGIAIQLLDTFVGVAGT-NTVQLKVYTNLKTMKSGKEF 392
I KDGKV + + + + + + V G +L + +LK ++ +E+
Sbjct: 302 ILKDGKVVAEKYDKAPLELEYKDDVGVTVHKAWENVGGDYGYAELVISKDLKKLELDEEY 361
Query: 393 MPGWKAEFAIDANNKVIKWFALVNEDPLE----------GKEIKLFDTYT-IDYSGTVKT 441
+ WKA +A+ +N +K +N++ ++ G ++ D+ +D VK
Sbjct: 362 VTDWKA-YAVLNDNGTMKLEDDLNDNNVDKVVGIALRYDGDKLDDLDSGDEVDILDYVKF 420
Query: 442 KEVGKIEYAVLKAYIYIDPIEREYKDITLTKGDEIEDTEYYIGDINVEFKPKETYI---- 497
K + LK Y +D + D TL G++++ +N E K K+
Sbjct: 421 KLDDEDSNDKLKVYFSMD----KDVDATLNIGEKVKA-------LNAEVKLKDIKANAVE 469
Query: 498 PKKLTEPITVLDTEIMEQGLENVDSNLILVGGPVVNKVAAALADDLGVPKTYDEWKEKFG 557
P LT PI LDTE+ L+ D NL+LVGGPV NK+ L D K
Sbjct: 470 PVSLTAPIAKLDTEV---SLDTADKNLVLVGGPVANKLTKELVD---------AGKLALD 517
Query: 558 TGAESAQIIYKEKCGKIGGYGVLLVAGTDREGTRAAAEALLE 599
+ + + + G+ V++VAG DRE TR AA L++
Sbjct: 518 NNSPATIALIPDAAN---GHDVIVVAGGDREKTREAALELIK 556
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.135 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229435557
Number of Sequences: 2977
Number of extensions: 10589520
Number of successful extensions: 20054
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20044
Number of HSP's gapped (non-prelim): 6
length of query: 604
length of database: 189,106,746
effective HSP length: 60
effective length of query: 544
effective length of database: 153,197,526
effective search space: 83339454144
effective search space used: 83339454144
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 168 (69.9 bits)