BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1862 (PAB1862) DE:Hypothetical protein
         (250 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75119 hypothetical protein PAB1862 - Pyrococcus abyssi (st...   496  e-139
pir||F71012 hypothetical protein PH1396 - Pyrococcus horikoshii ...   324  6e-88

>pir||D75119 hypothetical protein PAB1862 - Pyrococcus abyssi (strain Orsay)
           >gi|5458180|emb|CAB49669.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 250
           
 Score =  496 bits (1263), Expect = e-139
 Identities = 250/250 (100%), Positives = 250/250 (100%)

Query: 1   MGLNKRVLGIISLLVLTLGYVGYGYSQFQDIINPQKSGIVRQYVVIQYPNSSFLVLSSIE 60
           MGLNKRVLGIISLLVLTLGYVGYGYSQFQDIINPQKSGIVRQYVVIQYPNSSFLVLSSIE
Sbjct: 1   MGLNKRVLGIISLLVLTLGYVGYGYSQFQDIINPQKSGIVRQYVVIQYPNSSFLVLSSIE 60

Query: 61  YVNLTLGGWEPPAGSKAYLINMRSYVTGIPEIDLNMSLQLRYEKFTIIVGSSEVKKCSSN 120
           YVNLTLGGWEPPAGSKAYLINMRSYVTGIPEIDLNMSLQLRYEKFTIIVGSSEVKKCSSN
Sbjct: 61  YVNLTLGGWEPPAGSKAYLINMRSYVTGIPEIDLNMSLQLRYEKFTIIVGSSEVKKCSSN 120

Query: 121 PEEFYGSCEDRALAVSEVTVLVSSLFKRYYYWEAIKRGLNNESAKMYAYKETMNRKSIRY 180
           PEEFYGSCEDRALAVSEVTVLVSSLFKRYYYWEAIKRGLNNESAKMYAYKETMNRKSIRY
Sbjct: 121 PEEFYGSCEDRALAVSEVTVLVSSLFKRYYYWEAIKRGLNNESAKMYAYKETMNRKSIRY 180

Query: 181 LSFLAKAEIGLGKLGNKENLCIVILGPAEGSEKNEIIIPRRGLIILKGKSDAALRAEAIL 240
           LSFLAKAEIGLGKLGNKENLCIVILGPAEGSEKNEIIIPRRGLIILKGKSDAALRAEAIL
Sbjct: 181 LSFLAKAEIGLGKLGNKENLCIVILGPAEGSEKNEIIIPRRGLIILKGKSDAALRAEAIL 240

Query: 241 MEHITGFRLS 250
           MEHITGFRLS
Sbjct: 241 MEHITGFRLS 250


>pir||F71012 hypothetical protein PH1396 - Pyrococcus horikoshii
           >gi|3257819|dbj|BAA30502.1| (AP000006) 206aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 206
           
 Score =  324 bits (822), Expect = 6e-88
 Identities = 147/206 (71%), Positives = 185/206 (89%)

Query: 45  VIQYPNSSFLVLSSIEYVNLTLGGWEPPAGSKAYLINMRSYVTGIPEIDLNMSLQLRYEK 104
           +IQYPN+SFLVLS +EYVNLT+ GW+PP GSKAYLIN+RSYVTGIPE+DLN++ + +Y+K
Sbjct: 1   MIQYPNASFLVLSGVEYVNLTIRGWKPPEGSKAYLINLRSYVTGIPEVDLNITFKSKYDK 60

Query: 105 FTIIVGSSEVKKCSSNPEEFYGSCEDRALAVSEVTVLVSSLFKRYYYWEAIKRGLNNESA 164
           FTIIVGS EV+KCSS P+EFYG+CEDR LAV+E+TV+ S LFKRYYYW+AIK G++  SA
Sbjct: 61  FTIIVGSPEVRKCSSRPQEFYGNCEDRTLAVTEITVMTSYLFKRYYYWKAIKEGMSESSA 120

Query: 165 KMYAYKETMNRKSIRYLSFLAKAEIGLGKLGNKENLCIVILGPAEGSEKNEIIIPRRGLI 224
           + YAYKETM RK+++YLSFLAK ++GLGKLGN+++LC++ILGPAEG+EK+EIIIPR GL+
Sbjct: 121 REYAYKETMKRKTVKYLSFLAKVQLGLGKLGNRKHLCVLILGPAEGAEKSEIIIPRPGLV 180

Query: 225 ILKGKSDAALRAEAILMEHITGFRLS 250
           I+KGKSD ALRAEA+L+EHI G  LS
Sbjct: 181 IIKGKSDGALRAEAVLIEHILGLELS 206


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.138    0.390 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88120472
Number of Sequences: 2977
Number of extensions: 3482363
Number of successful extensions: 8542
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8540
Number of HSP's gapped (non-prelim): 2
length of query: 250
length of database: 189,106,746
effective HSP length: 56
effective length of query: 194
effective length of database: 155,591,474
effective search space: 30184745956
effective search space used: 30184745956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)