BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1863 708617 708168 -150 !not a gene!
         (150 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71012 hypothetical protein PH1398 - Pyrococcus horikoshii ...   158  3e-38

>pir||H71012 hypothetical protein PH1398 - Pyrococcus horikoshii
           >gi|3257821|dbj|BAA30504.1| (AP000006) 111aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 111
           
 Score =  158 bits (396), Expect = 3e-38
 Identities = 80/111 (72%), Positives = 85/111 (76%)

Query: 13  IYLPISYMNSLAVSGLFSFLSMSRILSKKGTMYFSNSMYLSLGTKMFPILFIPFXXXXXX 72
           +YLPISYMNSLAV GL SF S+   LSKKG MYFSNS+YLS GTKMFPILF PF      
Sbjct: 1   MYLPISYMNSLAVKGLLSFSSILSTLSKKGIMYFSNSIYLSFGTKMFPILFTPFFLSSAS 60

Query: 73  XXXXXPRMKGFNVFMKSSSMPPAVVTITSTFLSFTSQAIISLKPEDTMLDV 123
                PRMKGFN FMKSSS PPAVVTITSTF S TSQA+ISL+PED M DV
Sbjct: 61  STSQSPRMKGFNDFMKSSSTPPAVVTITSTFFSLTSQAMISLRPEDIMFDV 111


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.137    0.393 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37782559
Number of Sequences: 2977
Number of extensions: 1075077
Number of successful extensions: 2883
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2882
Number of HSP's gapped (non-prelim): 1
length of query: 150
length of database: 189,106,746
effective HSP length: 54
effective length of query: 96
effective length of database: 156,788,448
effective search space: 15051691008
effective search space used: 15051691008
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 161 (67.1 bits)