BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1865 (PAB1865) DE:Hypothetical protein
         (298 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75119 hypothetical protein PAB1865 - Pyrococcus abyssi (st...   594  e-169
pir||B71013 hypothetical protein PH1400 - Pyrococcus horikoshii ...   461  e-129

>pir||A75119 hypothetical protein PAB1865 - Pyrococcus abyssi (strain Orsay)
           >gi|5458177|emb|CAB49666.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 298
           
 Score =  594 bits (1516), Expect = e-169
 Identities = 298/298 (100%), Positives = 298/298 (100%)

Query: 1   MTRMERLLEDLKIRLPEREIPKVRDVILAFRELSSLPVSPLYPRGFHPLVRIKKKLGGIE 60
           MTRMERLLEDLKIRLPEREIPKVRDVILAFRELSSLPVSPLYPRGFHPLVRIKKKLGGIE
Sbjct: 1   MTRMERLLEDLKIRLPEREIPKVRDVILAFRELSSLPVSPLYPRGFHPLVRIKKKLGGIE 60

Query: 61  KDIIISPIDFTIINNANMPPWKRIFDFSLDEDFVERGSVMGVPIVLVGKFEEVTSIKRLI 120
           KDIIISPIDFTIINNANMPPWKRIFDFSLDEDFVERGSVMGVPIVLVGKFEEVTSIKRLI
Sbjct: 61  KDIIISPIDFTIINNANMPPWKRIFDFSLDEDFVERGSVMGVPIVLVGKFEEVTSIKRLI 120

Query: 121 SEIIPHMTVKPEKVYSFRNEAFMKFEGDMFLKFKIVGSALEFTSFNVPLSYLPRILGRAT 180
           SEIIPHMTVKPEKVYSFRNEAFMKFEGDMFLKFKIVGSALEFTSFNVPLSYLPRILGRAT
Sbjct: 121 SEIIPHMTVKPEKVYSFRNEAFMKFEGDMFLKFKIVGSALEFTSFNVPLSYLPRILGRAT 180

Query: 181 FVLDSMFRSKNAEFYRLLFVSSLGTFSTFYTFFMRHIYGKLPLEHKEFLEEMHDYKNFLQ 240
           FVLDSMFRSKNAEFYRLLFVSSLGTFSTFYTFFMRHIYGKLPLEHKEFLEEMHDYKNFLQ
Sbjct: 181 FVLDSMFRSKNAEFYRLLFVSSLGTFSTFYTFFMRHIYGKLPLEHKEFLEEMHDYKNFLQ 240

Query: 241 LIYFHISRMNIDRIQDRVSILIRRRSRPDRPLELEIIFRENGVEVRDKIRRAQIEVLV 298
           LIYFHISRMNIDRIQDRVSILIRRRSRPDRPLELEIIFRENGVEVRDKIRRAQIEVLV
Sbjct: 241 LIYFHISRMNIDRIQDRVSILIRRRSRPDRPLELEIIFRENGVEVRDKIRRAQIEVLV 298


>pir||B71013 hypothetical protein PH1400 - Pyrococcus horikoshii
           >gi|3257823|dbj|BAA30506.1| (AP000006) 298aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 298
           
 Score =  461 bits (1174), Expect = e-129
 Identities = 212/298 (71%), Positives = 261/298 (87%)

Query: 1   MTRMERLLEDLKIRLPEREIPKVRDVILAFRELSSLPVSPLYPRGFHPLVRIKKKLGGIE 60
           M ++ERLLEDLK+RLPEREI K ++ ILAFRELS++PVSPLYPRGFHP++R+KK+LGGI 
Sbjct: 1   MNKLERLLEDLKLRLPEREINKAKEAILAFRELSAIPVSPLYPRGFHPILRLKKRLGGIY 60

Query: 61  KDIIISPIDFTIINNANMPPWKRIFDFSLDEDFVERGSVMGVPIVLVGKFEEVTSIKRLI 120
           K+++ISP+D TII  ANMPPWKRIF+F++DED VERG + G+ I+LVGK +E+  ++ L+
Sbjct: 61  KEVLISPLDLTIITGANMPPWKRIFEFTIDEDVVERGEIQGIRILLVGKPQELRMVRTLL 120

Query: 121 SEIIPHMTVKPEKVYSFRNEAFMKFEGDMFLKFKIVGSALEFTSFNVPLSYLPRILGRAT 180
           SEIIP M V+P  +YS +NE F+KFEG+ FL+ +I+GS LEFTSFN  LS+LPR+LGRA 
Sbjct: 121 SEIIPQMNVRPIAIYSLKNEIFLKFEGERFLRLRIIGSTLEFTSFNFQLSHLPRVLGRAV 180

Query: 181 FVLDSMFRSKNAEFYRLLFVSSLGTFSTFYTFFMRHIYGKLPLEHKEFLEEMHDYKNFLQ 240
           F LDS+FRSKNAEFYRL FV+SLGTF+ FYTFFMRH+Y KLPLEHKEFLEEMHDYKNFLQ
Sbjct: 181 FTLDSLFRSKNAEFYRLFFVASLGTFNAFYTFFMRHVYPKLPLEHKEFLEEMHDYKNFLQ 240

Query: 241 LIYFHISRMNIDRIQDRVSILIRRRSRPDRPLELEIIFRENGVEVRDKIRRAQIEVLV 298
           L+YFH SRMN+DRI++ V I+IRRRSRPDRPLEL IIFR+NGVEVRD++ RAQ+EVLV
Sbjct: 241 LLYFHFSRMNLDRIRNEVGIIIRRRSRPDRPLELRIIFRDNGVEVRDRVGRAQVEVLV 298


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.328    0.146    0.420 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106150100
Number of Sequences: 2977
Number of extensions: 4562590
Number of successful extensions: 12979
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12977
Number of HSP's gapped (non-prelim): 2
length of query: 298
length of database: 189,106,746
effective HSP length: 53
effective length of query: 245
effective length of database: 157,386,935
effective search space: 38559799075
effective search space used: 38559799075
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 165 (68.7 bits)