BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1866 (PAB1866) DE:Hypothetical protein
         (204 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75118 hypothetical protein PAB1866 - Pyrococcus abyssi (st...   408  e-113
pir||C71013 hypothetical protein PH1401 - Pyrococcus horikoshii ...   324  5e-88
pir||F64504 hypothetical protein MJ1640 - Methanococcus jannasch...   141  4e-33
gi|11498661 conserved hypothetical protein [Archaeoglobus fulgid...   134  6e-31
gb|AAG20154.1| (AE005093) Vng1980c [Halobacterium sp. NRC-1]           98  1e-19

>pir||H75118 hypothetical protein PAB1866 - Pyrococcus abyssi (strain Orsay)
           >gi|5458176|emb|CAB49665.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 204
           
 Score =  408 bits (1038), Expect = e-113
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
           MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP
Sbjct: 1   MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60

Query: 61  DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEEIKVLPGIYVSNMSF 120
           DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEEIKVLPGIYVSNMSF
Sbjct: 61  DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEEIKVLPGIYVSNMSF 120

Query: 121 EDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMKVSI 180
           EDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMKVSI
Sbjct: 121 EDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMKVSI 180

Query: 181 GPKAYLTSHVIAYVNIYLDRLGIP 204
           GPKAYLTSHVIAYVNIYLDRLGIP
Sbjct: 181 GPKAYLTSHVIAYVNIYLDRLGIP 204


>pir||C71013 hypothetical protein PH1401 - Pyrococcus horikoshii
           >gi|3257824|dbj|BAA30507.1| (AP000006) 203aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 203
           
 Score =  324 bits (822), Expect = 5e-88
 Identities = 157/204 (76%), Positives = 181/204 (87%), Gaps = 1/204 (0%)

Query: 1   MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
           MRVFI+KANEAHT  DFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP
Sbjct: 1   MRVFIVKANEAHTDYDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60

Query: 61  DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEEIKVLPGIYVSNMSF 120
            PPK++RFEGP+L+PKILNPDELS AK+I KAL  GK++K  ST+E++VLPG+YVSNM+F
Sbjct: 61  SPPKTIRFEGPKLRPKILNPDELSIAKVIIKALNAGKNLKGSSTKELEVLPGVYVSNMTF 120

Query: 121 EDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMKVSI 180
           EDVIR  I R  LY+LEE G DI +V+FP+NNVAF+LGDHIGLS EDL  LE +  K+SI
Sbjct: 121 EDVIRKNI-RMNLYVLEEGGADIMKVKFPRNNVAFILGDHIGLSEEDLKTLEGIAKKISI 179

Query: 181 GPKAYLTSHVIAYVNIYLDRLGIP 204
           GPKAYLTSHVI+YVNI+LDR+G+P
Sbjct: 180 GPKAYLTSHVISYVNIHLDRIGVP 203


>pir||F64504 hypothetical protein MJ1640 - Methanococcus jannaschii
           >gi|1500540|gb|AAB99660.1| (U67604) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 205
           
 Score =  141 bits (353), Expect = 4e-33
 Identities = 76/203 (37%), Positives = 124/203 (60%), Gaps = 7/203 (3%)

Query: 1   MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
           MR FI KAN+  T++D +LKDLPG+ GR+DL+CR ++ AF LSH  R++V  Y  L G P
Sbjct: 1   MREFIFKANKTITSSDINLKDLPGSCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQP 60

Query: 61  DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEE-IKVLPGIYVSNMS 119
           +PP  ++F G ELK   ++PDE + A  I KAL++ +++  +  ++  +  PGIYV  + 
Sbjct: 61  NPPVCIKFVGSELKK--VSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRRLG 118

Query: 120 FEDVIRVVIKRFP-LYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMK- 177
           F +++   ++    +Y L  +G+D+  V+    N  F++GDHIG+  ED  FL+ +  K 
Sbjct: 119 FRNLVLEKLEEGKNIYYLHMNGEDVENVDI--ENPVFIIGDHIGIGEEDERFLDEIKAKR 176

Query: 178 VSIGPKAYLTSHVIAYVNIYLDR 200
           +S+ P     +H I  ++  LD+
Sbjct: 177 ISLSPLELHANHCITIIHNVLDK 199


>gi|11498661 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483081|pir||H69381 conserved hypothetical protein
           AF1056 - Archaeoglobus fulgidus
           >gi|2649533|gb|AAB90184.1| (AE001030) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 288
           
 Score =  134 bits (335), Expect = 6e-31
 Identities = 81/204 (39%), Positives = 122/204 (59%), Gaps = 15/204 (7%)

Query: 1   MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
           +R F+I  N+A T   FSL DLPG +GR+D++CR  + A  +SH  R++V VY+ LLGPP
Sbjct: 95  VRGFLIVGNKAFT-QPFSLNDLPG-AGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPP 152

Query: 61  DPPKSLRFEGPELKPKILNPDELSTAKIIGKAL--ERGKDIKRKSTEEIKVLPGIYVSNM 118
            PPKS+  +G E++   ++PDE + A  I KAL  E GK  K       KV  G+YVS  
Sbjct: 153 SPPKSILIKGDEVRR--MSPDERNVAGHIKKALAVECGKSWK-------KVHSGVYVSRK 203

Query: 119 SFEDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLES-VGMK 177
             E++I  + +++ +  L+EDG DI+  + P N + FV+GDH GL+ E    +E    +K
Sbjct: 204 GLEELIEELSEKYSIIYLKEDGVDISNAQLPPNPL-FVIGDHEGLTEEQEKVVERYAALK 262

Query: 178 VSIGPKAYLTSHVIAYVNIYLDRL 201
           +S+ P + L    +   + +LDRL
Sbjct: 263 LSLSPLSLLAEQCVVIAHHHLDRL 286


>gb|AAG20154.1| (AE005093) Vng1980c [Halobacterium sp. NRC-1]
           Length = 196
           
 Score = 97.5 bits (239), Expect = 1e-19
 Identities = 65/205 (31%), Positives = 109/205 (52%), Gaps = 16/205 (7%)

Query: 1   MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
           MR F++  ++A T  DF L DLPG +GR+D++CR +++A  +SH  R +V V++ L    
Sbjct: 1   MRQFVVLGHDAPTTPDFPLDDLPGAAGRLDVLCRCVSAALFVSHGIRDDVEVFLVL---- 56

Query: 61  DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKST--EEIKVLPGIYVSNM 118
               ++R +   +  + ++PDE + A ++ +AL    D K ++   +E    PGI+VS  
Sbjct: 57  GDEVTVRIDAGAV--QYMHPDERNVAGLLKQAL----DAKTEAIGHQEASSSPGIHVSKR 110

Query: 119 SFEDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFL-ESVGMK 177
            FE V+  V    P+  L EDG  +  V+ P  +  FVL DH   ++ + S L ++   +
Sbjct: 111 GFEAVLDAV--SGPVVALHEDGDALAAVD-PLADPVFVLSDHRDFTAAEASLLADASDHR 167

Query: 178 VSIGPKAYLTSHVIAYVNIYLDRLG 202
           V +GP      H I   + +LD  G
Sbjct: 168 VRVGPTVLHADHAITVAHNHLDTAG 192


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.400 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77568156
Number of Sequences: 2977
Number of extensions: 3287553
Number of successful extensions: 8789
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8779
Number of HSP's gapped (non-prelim): 5
length of query: 204
length of database: 189,106,746
effective HSP length: 54
effective length of query: 150
effective length of database: 156,788,448
effective search space: 23518267200
effective search space used: 23518267200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)