BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1866 (PAB1866) DE:Hypothetical protein
(204 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75118 hypothetical protein PAB1866 - Pyrococcus abyssi (st... 408 e-113
pir||C71013 hypothetical protein PH1401 - Pyrococcus horikoshii ... 324 5e-88
pir||F64504 hypothetical protein MJ1640 - Methanococcus jannasch... 141 4e-33
gi|11498661 conserved hypothetical protein [Archaeoglobus fulgid... 134 6e-31
gb|AAG20154.1| (AE005093) Vng1980c [Halobacterium sp. NRC-1] 98 1e-19
>pir||H75118 hypothetical protein PAB1866 - Pyrococcus abyssi (strain Orsay)
>gi|5458176|emb|CAB49665.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 204
Score = 408 bits (1038), Expect = e-113
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP
Sbjct: 1 MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
Query: 61 DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEEIKVLPGIYVSNMSF 120
DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEEIKVLPGIYVSNMSF
Sbjct: 61 DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEEIKVLPGIYVSNMSF 120
Query: 121 EDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMKVSI 180
EDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMKVSI
Sbjct: 121 EDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMKVSI 180
Query: 181 GPKAYLTSHVIAYVNIYLDRLGIP 204
GPKAYLTSHVIAYVNIYLDRLGIP
Sbjct: 181 GPKAYLTSHVIAYVNIYLDRLGIP 204
>pir||C71013 hypothetical protein PH1401 - Pyrococcus horikoshii
>gi|3257824|dbj|BAA30507.1| (AP000006) 203aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 203
Score = 324 bits (822), Expect = 5e-88
Identities = 157/204 (76%), Positives = 181/204 (87%), Gaps = 1/204 (0%)
Query: 1 MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
MRVFI+KANEAHT DFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP
Sbjct: 1 MRVFIVKANEAHTDYDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
Query: 61 DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEEIKVLPGIYVSNMSF 120
PPK++RFEGP+L+PKILNPDELS AK+I KAL GK++K ST+E++VLPG+YVSNM+F
Sbjct: 61 SPPKTIRFEGPKLRPKILNPDELSIAKVIIKALNAGKNLKGSSTKELEVLPGVYVSNMTF 120
Query: 121 EDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMKVSI 180
EDVIR I R LY+LEE G DI +V+FP+NNVAF+LGDHIGLS EDL LE + K+SI
Sbjct: 121 EDVIRKNI-RMNLYVLEEGGADIMKVKFPRNNVAFILGDHIGLSEEDLKTLEGIAKKISI 179
Query: 181 GPKAYLTSHVIAYVNIYLDRLGIP 204
GPKAYLTSHVI+YVNI+LDR+G+P
Sbjct: 180 GPKAYLTSHVISYVNIHLDRIGVP 203
>pir||F64504 hypothetical protein MJ1640 - Methanococcus jannaschii
>gi|1500540|gb|AAB99660.1| (U67604) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 205
Score = 141 bits (353), Expect = 4e-33
Identities = 76/203 (37%), Positives = 124/203 (60%), Gaps = 7/203 (3%)
Query: 1 MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
MR FI KAN+ T++D +LKDLPG+ GR+DL+CR ++ AF LSH R++V Y L G P
Sbjct: 1 MREFIFKANKTITSSDINLKDLPGSCGRLDLLCRCVSDAFFLSHDIRRDVVFYAVLYGQP 60
Query: 61 DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKSTEE-IKVLPGIYVSNMS 119
+PP ++F G ELK ++PDE + A I KAL++ +++ + ++ + PGIYV +
Sbjct: 61 NPPVCIKFVGSELKK--VSPDERNIAIFIKKALKKFEELDEEQRKDWNQSTPGIYVRRLG 118
Query: 120 FEDVIRVVIKRFP-LYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLESVGMK- 177
F +++ ++ +Y L +G+D+ V+ N F++GDHIG+ ED FL+ + K
Sbjct: 119 FRNLVLEKLEEGKNIYYLHMNGEDVENVDI--ENPVFIIGDHIGIGEEDERFLDEIKAKR 176
Query: 178 VSIGPKAYLTSHVIAYVNIYLDR 200
+S+ P +H I ++ LD+
Sbjct: 177 ISLSPLELHANHCITIIHNVLDK 199
>gi|11498661 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483081|pir||H69381 conserved hypothetical protein
AF1056 - Archaeoglobus fulgidus
>gi|2649533|gb|AAB90184.1| (AE001030) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 288
Score = 134 bits (335), Expect = 6e-31
Identities = 81/204 (39%), Positives = 122/204 (59%), Gaps = 15/204 (7%)
Query: 1 MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
+R F+I N+A T FSL DLPG +GR+D++CR + A +SH R++V VY+ LLGPP
Sbjct: 95 VRGFLIVGNKAFT-QPFSLNDLPG-AGRMDVLCRCTSQALFISHGIRRDVEVYLLLLGPP 152
Query: 61 DPPKSLRFEGPELKPKILNPDELSTAKIIGKAL--ERGKDIKRKSTEEIKVLPGIYVSNM 118
PPKS+ +G E++ ++PDE + A I KAL E GK K KV G+YVS
Sbjct: 153 SPPKSILIKGDEVRR--MSPDERNVAGHIKKALAVECGKSWK-------KVHSGVYVSRK 203
Query: 119 SFEDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFLES-VGMK 177
E++I + +++ + L+EDG DI+ + P N + FV+GDH GL+ E +E +K
Sbjct: 204 GLEELIEELSEKYSIIYLKEDGVDISNAQLPPNPL-FVIGDHEGLTEEQEKVVERYAALK 262
Query: 178 VSIGPKAYLTSHVIAYVNIYLDRL 201
+S+ P + L + + +LDRL
Sbjct: 263 LSLSPLSLLAEQCVVIAHHHLDRL 286
>gb|AAG20154.1| (AE005093) Vng1980c [Halobacterium sp. NRC-1]
Length = 196
Score = 97.5 bits (239), Expect = 1e-19
Identities = 65/205 (31%), Positives = 109/205 (52%), Gaps = 16/205 (7%)
Query: 1 MRVFIIKANEAHTANDFSLKDLPGTSGRIDLICRALNSAFHLSHSFRKNVRVYVTLLGPP 60
MR F++ ++A T DF L DLPG +GR+D++CR +++A +SH R +V V++ L
Sbjct: 1 MRQFVVLGHDAPTTPDFPLDDLPGAAGRLDVLCRCVSAALFVSHGIRDDVEVFLVL---- 56
Query: 61 DPPKSLRFEGPELKPKILNPDELSTAKIIGKALERGKDIKRKST--EEIKVLPGIYVSNM 118
++R + + + ++PDE + A ++ +AL D K ++ +E PGI+VS
Sbjct: 57 GDEVTVRIDAGAV--QYMHPDERNVAGLLKQAL----DAKTEAIGHQEASSSPGIHVSKR 110
Query: 119 SFEDVIRVVIKRFPLYILEEDGKDITEVEFPKNNVAFVLGDHIGLSSEDLSFL-ESVGMK 177
FE V+ V P+ L EDG + V+ P + FVL DH ++ + S L ++ +
Sbjct: 111 GFEAVLDAV--SGPVVALHEDGDALAAVD-PLADPVFVLSDHRDFTAAEASLLADASDHR 167
Query: 178 VSIGPKAYLTSHVIAYVNIYLDRLG 202
V +GP H I + +LD G
Sbjct: 168 VRVGPTVLHADHAITVAHNHLDTAG 192
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77568156
Number of Sequences: 2977
Number of extensions: 3287553
Number of successful extensions: 8789
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8779
Number of HSP's gapped (non-prelim): 5
length of query: 204
length of database: 189,106,746
effective HSP length: 54
effective length of query: 150
effective length of database: 156,788,448
effective search space: 23518267200
effective search space used: 23518267200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)