BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1867 (psmB-like) DE:proteasome, subunit beta
(207 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75118 proteasome, chain beta PAB1867 - Pyrococcus abyssi (... 404 e-112
pir||D71013 probable proteasome beta subunit precursor - Pyrococ... 359 1e-98
sp|Q58634|PRCB_METJA PROTEASOME BETA SUBUNIT PRECURSOR (MULTICAT... 192 2e-48
sp|O27270|PRCB_METTH PROTEASOME BETA SUBUNIT PRECURSOR (MULTICAT... 187 6e-47
pir||B72749 probable proteasome, beta subunit APE0521 - Aeropyru... 175 4e-43
gi|11498092 proteasome, subunit beta (psmB) [Archaeoglobus fulgi... 175 4e-43
sp|Q50534|PRCB_METTE PROTEASOME BETA SUBUNIT PRECURSOR (MULTICAT... 174 6e-43
pir||F71248 probable proteasome beta subunit - Pyrococcus horiko... 167 1e-40
sp|P28061|PRCB_THEAC PROTEASOME BETA SUBUNIT PRECURSOR (MULTICAT... 164 9e-40
pir||H75212 proteasome, chain beta (psmb) PAB2199 - Pyrococcus a... 160 1e-38
emb|CAB57537.1| (Y18930) proteasome, beta subunit [Sulfolobus so... 156 2e-37
sp|Q9UXF3|PRCB_SULSO PROTEASOME BETA SUBUNIT PRECURSOR (MULTICAT... 156 2e-37
gb|AAK41063.1| Proteasome subunit [Sulfolobus solfataricus] 156 2e-37
pir||T48677 proteasome beta-1 chain [validated] - Haloferax volc... 148 3e-35
gb|AAG19322.1| (AE005027) proteasome, subunit alpha; PsmA [Halob... 145 5e-34
gb|AAK40616.1| Proteasome subunit [Sulfolobus solfataricus] 143 2e-33
pir||D72747 probable proteasome, beta subunit APE0507 - Aeropyru... 136 2e-31
gb|AAD22390.1|AF059493_1 (AF059493) proteasome subunit LMP7 [Sus... 112 4e-24
gi|4758970 proteasome (prosome, macropain) subunit, beta type, 8... 111 8e-24
pir||C44324 proteasome chain LMP7 precursor, splice form E1 - hu... 111 8e-24
pir||G01564 proteasome chain LMP7 precursor, splice form E2 - hu... 111 8e-24
gb|AAA56778.1| (U17497) proteasome subunit LMP7 [Homo sapiens] 111 8e-24
sp|P28062|PRCY_HUMAN PROTEASOME COMPONENT C13 PRECURSOR (MACROPA... 111 8e-24
sp|Q60177|PRCA_METJA PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC EN... 111 8e-24
sp|P28064|PRCY_RAT PROTEASOME COMPONENT C13 PRECURSOR (MACROPAIN... 111 8e-24
pir||S21126 multicatalytic endopeptidase complex (EC 3.4.99.46) ... 110 1e-23
sp|P28063|PRCY_MOUSE PROTEASOME COMPONENT C13 PRECURSOR (MACROPA... 110 1e-23
gb|AAA75035.1| (U22033) 20S proteasome subunit Lmp7 [Mus musculu... 110 1e-23
gb|AAA75037.1| (U22035) 20S proteasome subunit Lmp7 [Mus musculus] 110 1e-23
emb|CAA45780.1| (X64449) proteasome subunit MC13 [Mus musculus] 109 2e-23
dbj|BAB02194.1| (AP001298) proteasome epsilon chain precursor [A... 109 2e-23
dbj|BAA95591.1| (AB035496) 20S proteasome beta 6 subunit [Carass... 109 2e-23
dbj|BAA95592.1| (AB035497) 20S proteasome beta 6 subunit [Carass... 109 2e-23
sp|O24361|PRCE_SPIOL PROTEASOME EPSILON CHAIN PRECURSOR (MACROPA... 109 3e-23
gi|6755208 proteosome (prosome, macropain) subunit, beta type 8 ... 109 3e-23
sp|O23717|PRCE_ARATH PROTEASOME EPSILON CHAIN PRECURSOR (MACROPA... 109 3e-23
gb|AAF22654.1| (AF214525) interferon-gamma inducible proteasome ... 108 5e-23
dbj|BAA19767.1| (D89725) LMP7 [Oryzias latipes] 108 7e-23
gb|AAB87679.1| (AF032390) LMP7 [Danio rerio] 108 7e-23
pir||B75181 multicatalytic endopeptidase complex (EC 3.4.99.46) ... 108 7e-23
sp|O59219|PRCA_PYRHO PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC EN... 108 7e-23
dbj|BAA10935.1| (D64058) nurse shark LMPX [Ginglymostoma cirratum] 107 1e-22
gb|AAF26416.1|AF217726_1 (AF217726) 20S proteasome beta5 subunit... 107 1e-22
gb|AAF58748.1| (AE003828) Prosbeta5 gene product [Drosophila mel... 107 1e-22
pir||I52906 proteasome subunit MB1 - human (fragment) >gi|786582... 106 2e-22
gi|6755204 proteasome beta type subunit 5 [Mus musculus] >gi|289... 106 2e-22
dbj|BAA10933.1| (D64056) LMP7 of nurse shark [Ginglymostoma cirr... 106 2e-22
dbj|BAA10932.1| (D64055) LMPX of lamprey [Petromyzon marinus] 105 4e-22
sp|O55234|PRCE_MOUSE PROTEASOME EPSILON CHAIN PRECURSOR (MACROPA... 105 4e-22
gi|4506193 proteasome (prosome, macropain) subunit, beta type, 1... 105 5e-22
emb|CAC13117.1| (AJ271723) low molecular mass polypeptide subuni... 105 5e-22
gi|11419067 proteasome (prosome, macropain) subunit, beta type, ... 105 5e-22
gb|AAC97957.1| (AF104214) proteasome beta 5 subunit [Trypanosoma... 104 6e-22
gi|7242197 proteasome (prosome, macropain) subunit, beta type 1 ... 104 8e-22
emb|CAA56702.1| (X80686) component C5 of proteasome [Mus musculus] 104 8e-22
gi|4506201 proteasome (prosome, macropain) subunit, beta type, 5... 104 8e-22
sp|P28074|PRCE_HUMAN PROTEASOME EPSILON CHAIN PRECURSOR (MACROPA... 103 2e-21
sp|P28075|PRCE_RAT PROTEASOME EPSILON CHAIN PRECURSOR (MACROPAIN... 103 2e-21
gb|AAF46978.1| (AE003460) CG9868 gene product [Drosophila melano... 103 2e-21
pir||S30539 multicatalytic endopeptidase complex (EC 3.4.99.46) ... 102 2e-21
sp|P34065|PRCE_CHICK PROTEASOME CHAIN 1 PRECURSOR (MACROPAIN CHA... 102 2e-21
dbj|BAA96838.1| (AB026567) beta 5 subunit of 20S proteasome [Ory... 102 3e-21
emb|CAA66313.1| (X97729) LMP7-like protein [Botryllus schlosseri] 102 4e-21
dbj|BAA10934.1| (D64057) LMP7 [Ginglymostoma cirratum] 101 5e-21
pir||JC5074 proteasome epsilon chain precursor - Botryllus schlo... 101 5e-21
gb|AAF37285.1|AF226674_1 (AF226674) 20S proteasome beta 5 subuni... 101 5e-21
emb|CAC08538.1| (AJ132959) proteasome PRCE (beta-5) subunit prec... 101 5e-21
sp|P18421|PRC5_RAT PROTEASOME COMPONENT C5 (MACROPAIN SUBUNIT C5... 101 7e-21
pir||T43887 proteasome alpha chain [imported] - Thermococcus sp ... 101 9e-21
gb|AAF49685.1| (AE003532) Prosbeta2 gene product [Drosophila mel... 101 9e-21
emb|CAB96046.1| (AJ404677) proteasome beta 2 subunit [Giardia in... 101 9e-21
pir||I51536 XeLMPa.aa - African clawed frog >gi|971307|dbj|BAA07... 100 1e-20
pir||I51537 XeLMPb.aa - African clawed frog >gi|971309|dbj|BAA07... 100 1e-20
sp|Q09841|PRCF_SCHPO PUTATIVE PROTEASOME COMPONENT PUP1 PRECURSO... 100 1e-20
dbj|BAA19146.1| (AB000540) proteasome component PUP1 precursor [... 100 1e-20
gb|AAD53518.1|AF155578_1 (AF155578) proteasome subunit beta 5 [D... 100 1e-20
gb|AAF14267.1|AF142435_3 (AF142435) 20S proteasome beta-subunit ... 100 2e-20
dbj|BAA10931.1| (D64054) LMPX of hagfish [Myxine glutinosa] 100 2e-20
pir||T48678 proteasome alpha-1 chain [validated] - Haloferax vol... 100 2e-20
pir||JC5073 proteasome epsilon chain precursor - Geodia cydonium... 99 3e-20
gb|AAF46088.1| (AE003435) CG18341 gene product [Drosophila melan... 99 5e-20
dbj|BAA28276.1| (AB014058) beta 6 subunit of 20S proteasome [Ory... 98 6e-20
pir||T47893 proteasome component C5 - Arabidopsis thaliana >gi|5... 98 1e-19
sp|P42742|PRC5_ARATH PROTEASOME COMPONENT C5 (MULTICATALYTIC END... 98 1e-19
gb|AAB82570.1| (AF025791) 20S proteasome beta2 subunit [Drosophi... 97 1e-19
gb|AAB82571.1| (AF025792) 20S proteasome beta2 subunit [Drosophi... 97 1e-19
gb|AAC64284.1|AAC64284 (AF086832) 20S proteasome beta-subunit pr... 97 1e-19
dbj|BAA96835.1| (AB026564) beta 2 subunit of 20S proteasome [Ory... 97 2e-19
gb|AAC32067.1| (AF043531) 20S proteasome beta subunit PBB2 [Arab... 96 2e-19
gi|6325360 proteasome subunit; Pre2p [Saccharomyces cerevisiae] ... 96 4e-19
gb|AAA34906.1| (M96667) proteosome-related protein [Saccharomyce... 96 4e-19
gi|11498101 proteasome, subunit alpha (psmA) [Archaeoglobus fulg... 96 4e-19
emb|CAA73621.1| (Y13178) multicatalytic endopeptidase [Arabidops... 95 7e-19
gb|AAC32066.1| (AF043530) 20S proteasome beta subunit PBB1 [Arab... 95 7e-19
sp|Q59565|PRCA_METTE PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC EN... 94 9e-19
gb|AAD53521.1|AF155581_1 (AF155581) proteasome subunit beta 7 [D... 94 9e-19
gb|AAC45736.1| (U26422) proteasome beta-type subunit 2 [Rhodococ... 94 1e-18
gi|6755206 proteasome (prosome, macropain) subunit, beta type 7 ... 94 2e-18
gb|AAF97811.1|AF285103_1 (AF285103) proteasome z subunit [Rattus... 94 2e-18
pir||T48679 proteasome alpha-2 chain [validated] - Haloferax vol... 93 2e-18
pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Par... 93 2e-18
gi|4506203 proteasome (prosome, macropain) subunit, beta type, 7... 92 4e-18
pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From... 92 4e-18
gb|AAC45740.1| (U26421) proteasome beta-type subunit 1 [Rhodococ... 91 8e-18
pir||T38196 probable proteasome component c5 - fission yeast (S... 91 8e-18
pdb|1G65|K Chain K, Crystal Structure Of Epoxomicin:20s Proteaso... 91 8e-18
gb|AAG18783.1| (AE004983) proteasome, subunit beta; PsmB [Haloba... 90 1e-17
pir||JS0753 multicatalytic endopeptidase complex (EC 3.4.99.46) ... 88 9e-17
gb|AAB87680.1| (AF032391) proteasome subunit X [Danio rerio] 88 9e-17
sp|P30655|PRCE_SCHPO PROTEASOME COMPONENT PTS1 PRECURSOR (MACROP... 88 9e-17
gb|AAF72737.1|AF097521_1 (AF097521) proteasome B type subunit [C... 87 1e-16
gb|AAC35983.1| (AF088915) proteasome beta subunit [Petunia x hyb... 87 1e-16
gi|4506191 proteasome (prosome, macropain) subunit, beta type, 1... 87 2e-16
gb|AAD53037.1|AF115540_1 (AF115540) low molecular mass protein 2... 86 3e-16
gb|AAG16286.1|AC016024_9 (AC016024) leishmania proteasome subuni... 86 3e-16
gi|6320849 22.6 kDa proteasome subunit; Pre1p [Saccharomyces cer... 85 4e-16
sp|O26782|PRCA_METTH PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC EN... 85 6e-16
gb|AAD53516.1|AF155576_1 (AF155576) proteasome subunit beta 11 [... 85 8e-16
gb|AAC45614.1| (AF009645) proteasome beta subunit [Mycobacterium... 84 1e-15
pir||T23336 hypothetical protein K05C4.1 - Caenorhabditis elegan... 83 2e-15
pir||A70512 probable prcB protein - Mycobacterium tuberculosis (... 82 4e-15
pir||S72848 proteasome beta chain - Mycobacterium leprae >gi|467... 82 5e-15
emb|CAB97490.1| (AJ297366) 20S proteasome subunit [Giardia intes... 80 1e-14
emb|CAC13120.1| (AJ271723) low molecular mass polypeptide subuni... 80 2e-14
pir||T26649 hypothetical protein Y38A8.2 - Caenorhabditis elegan... 80 3e-14
sp|P25156|PRCA_THEAC PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC EN... 79 4e-14
gb|AAD53038.1|AF115541_1 (AF115541) low molecular mass protein 2... 78 6e-14
gi|6322459 Subunit of 20S proteasome; Pre3p [Saccharomyces cerev... 78 7e-14
gb|AAD28715.1|AF112117_1 (AF112117) low molecular mass polypepti... 78 7e-14
sp|Q9YC01|PRCA_AERPE PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC EN... 78 7e-14
pir||T21350 hypothetical protein F25H2.9 - Caenorhabditis elegan... 76 2e-13
emb|CAA09603.1| (AJ011383) 20S proteasome beta subunit [Cicer ar... 76 3e-13
pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From... 76 3e-13
gb|AAC32069.1| (AF043533) 20S proteasome beta subunit PBC2 [Arab... 76 3e-13
dbj|BAA19766.1| (D89724) LMP2 [Oryzias latipes] 76 4e-13
emb|CAB86711.1| (AL163505) 20S proteasome alpha 5 subunit [Leish... 76 4e-13
pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteaso... 76 4e-13
sp|P34119|PRC9_DICDI PROTEASOME SUBUNIT DD4 (MULTICATALYTIC ENDO... 75 5e-13
gb|AAD41426.1|AC007727_15 (AC007727) Identical to gb|Y13173 Arab... 75 5e-13
emb|CAA67761.1| (X99382) alpha proteasome [Entamoeba histolytica] 75 8e-13
emb|CAC13119.1| (AJ271723) low molecular mass polypeptide subuni... 74 1e-12
emb|CAA55591.1| (X78991) proteasomal subunit Pre3 [Saccharomyces... 74 1e-12
gb|AAC32146.1| (AF051246) probable proteasome subunit [Picea mar... 73 2e-12
sp|O73817|PRCT_ONCMY PROTEASOME THETA CHAIN (MACROPAIN THETA CHA... 73 2e-12
pir||S27332 proteasome chain LMP2 - human >gi|36059|emb|CAA44603... 73 3e-12
gi|7106387 proteasome (prosome, macropain) subunit, alpha type 5... 73 3e-12
pir||S17521 multicatalytic endopeptidase complex (EC 3.4.99.46) ... 72 4e-12
gi|4506187 proteasome (prosome, macropain) subunit, alpha type, ... 72 4e-12
pir||A55632 proteasome LMP2.s - human >gi|392959|gb|AAC50154.1| ... 72 4e-12
pir||T29206 hypothetical protein T20F5.2 - Caenorhabditis elegan... 72 4e-12
gb|AAG13340.1|AF266220_1 (AF266220) proteasome subunit beta type... 72 4e-12
gb|AAD53519.1|AF155579_1 (AF155579) proteasome subunit beta 9A [... 72 6e-12
gi|8394072 proteasome (prosome, macropain) subunit, alpha type 5... 71 7e-12
gi|6755202 proteasome (prosome, macropain) subunit, beta type, 3... 71 1e-11
dbj|BAA96836.1| (AB026565) beta 3 subunit of 20S proteasome [Ory... 71 1e-11
gi|8394082 proteasome (prosome, macropain) subunit, beta type, 3... 71 1e-11
gi|8567394 proteosome (prosome, macropain) subunit, beta type 9 ... 70 2e-11
gi|4506197 proteasome (prosome, macropain) subunit, beta type, 3... 70 2e-11
gi|11424309 similar to proteasome (prosome, macropain) subunit, ... 70 2e-11
gi|4506205 proteasome (prosome, macropain) subunit, beta type, 9... 69 3e-11
dbj|BAA96830.1| (AB026559) alpha 2 subunit of 20S proteasome [Or... 69 3e-11
pir||JC2019 multicatalytic endopeptidase complex (EC 3.4.99.46) ... 69 4e-11
gb|AAC35982.1| (AF088914) proteasome alpha subunit [Petunia x hy... 69 4e-11
dbj|BAA22577.1| (D44456) low molecular mass polypeptide complex ... 69 5e-11
sp|O23708|PRC3_ARATH PROTEASOME COMPONENT C3 (MACROPAIN SUBUNIT ... 69 5e-11
sp|P28076|PRC7_MOUSE PROTEASOME CHAIN 7 PRECURSOR (MACROPAIN CHA... 68 6e-11
gi|6981426 low molecular mass polypeptide 2 [Rattus norvegicus] ... 68 6e-11
dbj|BAA22584.1| (D44463) low molecular mass polypeptide complex ... 68 6e-11
sp|O73672|PRC3_CARAU PROTEASOME COMPONENT C3 (MACROPAIN SUBUNIT ... 68 6e-11
dbj|BAA19761.1| (D87690) proteasome subunit Y [Lampetra japonica] 68 8e-11
dbj|BAA22580.1| (D44459) low molecular mass polypeptide complex ... 68 8e-11
gb|AAF37284.1|AF226673_1 (AF226673) 20S proteasome beta 4 subuni... 68 8e-11
>pir||G75118 proteasome, chain beta PAB1867 - Pyrococcus abyssi (strain Orsay)
>gi|5458175|emb|CAB49664.1| (AJ248285) proteasome,
subunit beta [Pyrococcus abyssi]
Length = 207
Score = 404 bits (1027), Expect = e-112
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MLQLTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVG 60
MLQLTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVG
Sbjct: 1 MLQLTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVG 60
Query: 61 DILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRL 120
DILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRL
Sbjct: 61 DILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRL 120
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG
Sbjct: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
Query: 181 DGIMVVTITEEGYRELSNSRLKAILRQ 207
DGIMVVTITEEGYRELSNSRLKAILRQ
Sbjct: 181 DGIMVVTITEEGYRELSNSRLKAILRQ 207
>pir||D71013 probable proteasome beta subunit precursor - Pyrococcus horikoshii
>gi|3257825|dbj|BAA30508.1| (AP000006) 207aa long
hypothetical proteasome beta subunit precursor
[Pyrococcus horikoshii]
Length = 207
Score = 359 bits (912), Expect = 1e-98
Identities = 175/207 (84%), Positives = 198/207 (95%)
Query: 1 MLQLTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVG 60
MLQLTEKFKGTTTVGIVC DGVVLAADRRASLGNI+YA+NVTKIHKIDEHLAIAGAGDVG
Sbjct: 1 MLQLTEKFKGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVG 60
Query: 61 DILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRL 120
DILNLVRLLRAEAKLYY+QSGKRMSVKALATLLAN++NGA+ PYLAWFLVGG+DEKP+L
Sbjct: 61 DILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPKL 120
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
YSVDM+GGITEDKY AGSGMEFAYS+LDSEY+++L + EGIK+AV+AIN+AIKRDVFSG
Sbjct: 121 YSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSG 180
Query: 181 DGIMVVTITEEGYRELSNSRLKAILRQ 207
DGI+VVTIT+EGY+ELS+S L+A L+Q
Sbjct: 181 DGILVVTITKEGYKELSDSELEATLKQ 207
>sp|Q58634|PRCB_METJA PROTEASOME BETA SUBUNIT PRECURSOR (MULTICATALYTIC ENDOPEPTIDASE
COMPLEX BETA SUBUNIT) >gi|2129223|pir||D64454 proteasome
beta subunit homolog - Methanococcus jannaschii
>gi|1591869|gb|AAB99241.1| (U67564) proteasome, subunit
beta (psmB) [Methanococcus jannaschii]
Length = 224
Score = 192 bits (484), Expect = 2e-48
Identities = 95/200 (47%), Positives = 142/200 (70%), Gaps = 3/200 (1%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
KGTTTVG++C D V+LA D+RASLGN+V K K++KID+++A+ AG VGD +VRL
Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRL 64
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFD--EKPRLYSVDMM 126
L AEAKLY ++G+ + A ATLL+N+L+ +RM P+L ++GG+D E +L+S+D +
Sbjct: 65 LIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPL 124
Query: 127 GGITEDK-YVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMV 185
GG+ E+K + A GSG AY VL++ Y D+ V EGIK+A+ A+ SA++RD FSG+GI +
Sbjct: 125 GGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISL 184
Query: 186 VTITEEGYRELSNSRLKAIL 205
IT++G + + ++ IL
Sbjct: 185 AVITKDGVKIFEDEEIEKIL 204
>sp|O27270|PRCB_METTH PROTEASOME BETA SUBUNIT PRECURSOR (MULTICATALYTIC ENDOPEPTIDASE
COMPLEX BETA SUBUNIT) >gi|7435876|pir||E69027
proteasome, beta subunit - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622311|gb|AAB85691.1| (AE000888) proteasome, beta
subunit [Methanobacterium thermoautotrophicum]
Length = 210
Score = 187 bits (471), Expect = 6e-47
Identities = 93/196 (47%), Positives = 136/196 (68%), Gaps = 2/196 (1%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
KGTTTVGI C DGVV A +RRAS+GN++ K KI KIDEH+A AG V D +L++
Sbjct: 8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKY 67
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMG 127
L+AEA LY ++ +++S++A A L AN+L+ +R P++ L+GG DE ++YS+D G
Sbjct: 68 LKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSG 127
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
G+ DK+V+ GSG AY VL+ Y ++L V E + +A+ AI SA++RD +SG+GI+V T
Sbjct: 128 GMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVAT 187
Query: 188 IT-EEGYRELSNSRLK 202
+T EEG+R LS ++
Sbjct: 188 VTEEEGFRMLSEEEIQ 203
>pir||B72749 probable proteasome, beta subunit APE0521 - Aeropyrum pernix
(strain K1) >gi|5104170|dbj|BAA79486.1| (AP000059) 225aa
long hypothetical proteasome, beta subunit [Aeropyrum
pernix]
Length = 225
Score = 175 bits (439), Expect = 4e-43
Identities = 88/186 (47%), Positives = 124/186 (66%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTTVG++ SD V+LAAD+RA+ G ++ ++ V KI + ++A+ +G V D L +L
Sbjct: 31 GTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDVL 90
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGI 129
R E +LY + + SV+ +A+LL+N+L ++ PY+ +VGG+D +PRLY++D+ G I
Sbjct: 91 REEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYIVQLIVGGYDTQPRLYTLDLFGSI 150
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTIT 189
TEDKY A GSG AY VL+ YREDL V E IK+A AI SA+ RD SGDG VV I
Sbjct: 151 TEDKYTATGSGSPIAYGVLEERYREDLSVEEAIKVATTAIRSAVLRDAASGDGADVVVIG 210
Query: 190 EEGYRE 195
+GY E
Sbjct: 211 PQGYEE 216
>gi|11498092 proteasome, subunit beta (psmB) [Archaeoglobus fulgidus]
>gi|6093784|sp|O29769|PRCB_ARCFU PROTEASOME BETA SUBUNIT
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX BETA SUBUNIT)
>gi|7435875|pir||A69310 proteasome, subunit beta (psmB)
homolog - Archaeoglobus fulgidus
>gi|2650155|gb|AAB90757.1| (AE001071) proteasome,
subunit beta (psmB) [Archaeoglobus fulgidus]
Length = 213
Score = 175 bits (439), Expect = 4e-43
Identities = 94/208 (45%), Positives = 138/208 (66%), Gaps = 3/208 (1%)
Query: 1 MLQLTEK-FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDV 59
M + EK +KGTTTVG+VC DGVV+A ++RA++GN + +K KI++I + +A+ AG V
Sbjct: 1 MSMIEEKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSV 60
Query: 60 GDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFD-EKP 118
GD L R+++ EA LY + ++ +V+A+ATL +N+LN R PYL L+GG D E
Sbjct: 61 GDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGK 120
Query: 119 RLYSVDMMGGITEDK-YVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
+YS+D +GG E+K VA GSG AY VL+ + ++ V E +++AV AI SA+KRD
Sbjct: 121 SIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDS 180
Query: 178 FSGDGIMVVTITEEGYRELSNSRLKAIL 205
SGDGI VV ITE+ + + S ++ IL
Sbjct: 181 ASGDGIDVVKITEDEFYQYSPEEVEQIL 208
>sp|Q50534|PRCB_METTE PROTEASOME BETA SUBUNIT PRECURSOR (MULTICATALYTIC ENDOPEPTIDASE
COMPLEX BETA SUBUNIT) >gi|11265945|pir||T48879
proteasome psmB, beta chain - Methanosarcina thermophila
>gi|790625|gb|AAA91642.1| (U22157) beta-type proteasome
subunit [Methanosarcina thermophila]
Length = 210
Score = 174 bits (437), Expect = 6e-43
Identities = 85/197 (43%), Positives = 135/197 (68%), Gaps = 2/197 (1%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
KGTTTVG+VC+DG+VLA+++RA++G+ + +K K+++ID+ + + AG VGD LVRL
Sbjct: 8 KGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRL 67
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMG 127
+ E++LY + + M++K + TL++N L+ R P + L+GG D+ P +YS+D MG
Sbjct: 68 VSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMG 127
Query: 128 G-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVV 186
G I E + A GSG AY VL+ +YRE++ V+EG+ +A+ AI++A KRD SG+ I VV
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVV 187
Query: 187 TITEEGYRELSNSRLKA 203
IT+E ++ L +K+
Sbjct: 188 VITKEAFKRLDPEEVKS 204
>pir||F71248 probable proteasome beta subunit - Pyrococcus horikoshii
>gi|3256634|dbj|BAA29317.1| (AP000001) 197aa long
hypothetical proteasome beta subunit [Pyrococcus
horikoshii]
Length = 197
Score = 167 bits (418), Expect = 1e-40
Identities = 84/187 (44%), Positives = 126/187 (66%), Gaps = 1/187 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTTVGI DGV+LAAD +ASL ++V N+ KI I + +AI AG VGD+ + R+L
Sbjct: 6 GTTTVGIKVKDGVILAADTQASLDHMVETLNIRKIIPITDRIAITTAGSVGDVQMIARIL 65
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGI 129
AEA+ YY G+ M+ KA+A LL+N+LN + PYL ++GG+ ++P + ++D GG+
Sbjct: 66 EAEARYYYFAWGRPMTTKAMANLLSNILNENKWFPYLVQIIIGGYVDEPTIANLDPYGGL 125
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGD-GIMVVTI 188
D Y A GSG FA ++L+ Y+E+L + E ++A++AI +A RDV++G + VVTI
Sbjct: 126 IFDNYTATGSGTPFAIAILEEGYKENLGIEEAKELAIKAIKAAGSRDVYTGSKKVQVVTI 185
Query: 189 TEEGYRE 195
T+EG +E
Sbjct: 186 TKEGMQE 192
>sp|P28061|PRCB_THEAC PROTEASOME BETA SUBUNIT PRECURSOR (MULTICATALYTIC ENDOPEPTIDASE
COMPLEX BETA SUBUNIT) >gi|282687|pir||A42068 proteasome
beta chain - Thermoplasma acidophilum
>gi|1633385|pdb|1PMA|1 Chain 1, Proteasome From
Thermoplasma Acidophilum >gi|1633386|pdb|1PMA|2 Chain 2,
Proteasome From Thermoplasma Acidophilum
>gi|1633360|pdb|1PMA|B Chain B, Proteasome From
Thermoplasma Acidophilum >gi|1633374|pdb|1PMA|P Chain P,
Proteasome From Thermoplasma Acidophilum
>gi|1633375|pdb|1PMA|Q Chain Q, Proteasome From
Thermoplasma Acidophilum >gi|1633376|pdb|1PMA|R Chain R,
Proteasome From Thermoplasma Acidophilum
>gi|1633377|pdb|1PMA|S Chain S, Proteasome From
Thermoplasma Acidophilum >gi|1633378|pdb|1PMA|T Chain T,
Proteasome From Thermoplasma Acidophilum
>gi|1633379|pdb|1PMA|U Chain U, Proteasome From
Thermoplasma Acidophilum >gi|1633380|pdb|1PMA|V Chain V,
Proteasome From Thermoplasma Acidophilum
>gi|1633381|pdb|1PMA|W Chain W, Proteasome From
Thermoplasma Acidophilum >gi|1633382|pdb|1PMA|X Chain X,
Proteasome From Thermoplasma Acidophilum
>gi|1633383|pdb|1PMA|Y Chain Y, Proteasome From
Thermoplasma Acidophilum >gi|1633384|pdb|1PMA|Z Chain Z,
Proteasome From Thermoplasma Acidophilum
>gi|154680|gb|AAA72102.1| (M83674) proteasome
beta-subunit [Thermoplasma acidophilum]
>gi|10639779|emb|CAC11751.1| (AL445064) proteasome, beta
chain [Thermoplasma acidophilum]
Length = 211
Score = 164 bits (410), Expect = 9e-40
Identities = 84/199 (42%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTTVGI D V++A +RR ++ N + KN K+ +ID + + AG VGD LVR +
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYM 67
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGI 129
+AE +LY Q M ++A+ATLL+NMLN + +PY+ LVGG D P ++S+D GG
Sbjct: 68 KAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGS 127
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTIT 189
ED Y + GSG F Y VL+S+Y E + V EG+ + + AI++A +RD SG I V IT
Sbjct: 128 VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVIT 187
Query: 190 -EEGYRELSNSRLKAILRQ 207
++GY +L ++++ +R+
Sbjct: 188 RKDGYVQLPTDQIESRIRK 206
>pir||H75212 proteasome, chain beta (psmb) PAB2199 - Pyrococcus abyssi (strain
Orsay) >gi|5457660|emb|CAB49151.1| (AJ248283)
proteasome, subunit beta (psmB) [Pyrococcus abyssi]
Length = 197
Score = 160 bits (400), Expect = 1e-38
Identities = 80/187 (42%), Positives = 126/187 (66%), Gaps = 1/187 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTTVGI DGV+LAAD +ASL ++V N+ KI I + +AI AG VGD+ + R+L
Sbjct: 6 GTTTVGIRVKDGVILAADTQASLDHMVETLNIRKIIPITDRIAITTAGSVGDVQMIARIL 65
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGI 129
AEA+ Y G+ M+ +A+A LL+N+LN + PYL ++GG+ ++P + ++D +GG+
Sbjct: 66 EAEARYYQFTWGRPMTTRAMANLLSNILNENKWFPYLVQIIIGGYVDEPTIANLDPLGGL 125
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGD-GIMVVTI 188
D Y A GSG FA ++L+ YR++L + + ++A++A+ +A RDV++G I VVTI
Sbjct: 126 IFDDYTATGSGTPFAIAILEEGYRKNLGIEKAKELAIKAVKAAGARDVYTGSKKIQVVTI 185
Query: 189 TEEGYRE 195
T++G +E
Sbjct: 186 TKDGMKE 192
>emb|CAB57537.1| (Y18930) proteasome, beta subunit [Sulfolobus solfataricus]
Length = 225
Score = 156 bits (391), Expect = 2e-37
Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 7/199 (3%)
Query: 2 LQLTEKF-KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVG 60
LQL K KGTTTVGI +DGV+LAADRRAS G V K V K+ I + + I AG V
Sbjct: 22 LQLENKILKGTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVA 81
Query: 61 DILNLVRLLRAEAKLYYAQSGKR---MSVKALATLLANMLNGARMLPYLAWFLVGGFDEK 117
D+ + +L+ +Y+ S + +S+K +AT LAN+L+ + PY+ L+GG+D++
Sbjct: 82 DLQFIYDVLK---NIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQ 138
Query: 118 PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
PRL+++D +G ITE+ YVA GSG A VL+ EY + + E +A A+ SAIKRD
Sbjct: 139 PRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDS 198
Query: 178 FSGDGIMVVTITEEGYREL 196
F+G G++V I +G+ EL
Sbjct: 199 FTGTGVIVAKIHSKGHEEL 217
>sp|Q9UXF3|PRCB_SULSO PROTEASOME BETA SUBUNIT PRECURSOR (MULTICATALYTIC ENDOPEPTIDASE
COMPLEX BETA SUBUNIT)
Length = 208
Score = 156 bits (391), Expect = 2e-37
Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 7/199 (3%)
Query: 2 LQLTEKF-KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVG 60
LQL K KGTTTVGI +DGV+LAADRRAS G V K V K+ I + + I AG V
Sbjct: 5 LQLENKILKGTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVA 64
Query: 61 DILNLVRLLRAEAKLYYAQSGKR---MSVKALATLLANMLNGARMLPYLAWFLVGGFDEK 117
D+ + +L+ +Y+ S + +S+K +AT LAN+L+ + PY+ L+GG+D++
Sbjct: 65 DLQFIYDVLK---NIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQ 121
Query: 118 PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
PRL+++D +G ITE+ YVA GSG A VL+ EY + + E +A A+ SAIKRD
Sbjct: 122 PRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDS 181
Query: 178 FSGDGIMVVTITEEGYREL 196
F+G G++V I +G+ EL
Sbjct: 182 FTGTGVIVAKIHSKGHEEL 200
>gb|AAK41063.1| Proteasome subunit [Sulfolobus solfataricus]
Length = 225
Score = 156 bits (391), Expect = 2e-37
Identities = 87/199 (43%), Positives = 125/199 (62%), Gaps = 7/199 (3%)
Query: 2 LQLTEKF-KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVG 60
LQL K KGTTTVGI +DGV+LAADRRAS G V K V K+ I + + I AG V
Sbjct: 22 LQLENKILKGTTTVGIRVNDGVILAADRRASAGFFVANKMVRKVLYITDKIGITTAGSVA 81
Query: 61 DILNLVRLLRAEAKLYYAQSGKR---MSVKALATLLANMLNGARMLPYLAWFLVGGFDEK 117
D+ + +L+ +Y+ S + +S+K +AT LAN+L+ + PY+ L+GG+D++
Sbjct: 82 DLQFIYDVLK---NIYHYNSITKYGPISIKGIATRLANVLSATKYFPYIVQILIGGYDDQ 138
Query: 118 PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
PRL+++D +G ITE+ YVA GSG A VL+ EY + + E +A A+ SAIKRD
Sbjct: 139 PRLFNLDYLGDITEENYVATGSGSPVAMGVLEDEYNPKMTLDEAADLAKRAVFSAIKRDS 198
Query: 178 FSGDGIMVVTITEEGYREL 196
F+G G++V I +G+ EL
Sbjct: 199 FTGTGVIVAKIHSKGHEEL 217
>pir||T48677 proteasome beta-1 chain [validated] - Haloferax volcanii
>gi|5833210|gb|AAD53406.1|AF126262_1 (AF126262) beta-1
subunit of 20S proteasome [Haloferax volcanii]
Length = 243
Score = 148 bits (371), Expect = 3e-35
Identities = 79/184 (42%), Positives = 118/184 (63%), Gaps = 3/184 (1%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTTVGI +GVVLA D RAS+G +V +K+V K+ +I A+ AG V +L+ L
Sbjct: 49 GTTTVGIKTEEGVVLATDMRASMGYMVSSKDVQKVEEIHPTGALTIAGSVSAAQSLISSL 108
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
RAE +LY A+ G+ MS++AL+TL+ N L Y+ ++GG DE P +YS+D G
Sbjct: 109 RAEVRLYEARRGEDMSMQALSTLVGNFLRSGGF--YVVQPILGGVDETGPHIYSIDPAGS 166
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
I E++Y GSG ++A VL+ E+ + L + E +A +AI SA++RD+ SG+GI + +
Sbjct: 167 ILEEEYTVTGSGSQYALGVLEQEFEDGLSIEEAKGVATKAIRSAVERDLASGNGINIAVV 226
Query: 189 TEEG 192
TE+G
Sbjct: 227 TEDG 230
>gb|AAG19322.1| (AE005027) proteasome, subunit alpha; PsmA [Halobacterium sp.
NRC-1]
Length = 255
Score = 145 bits (361), Expect = 5e-34
Identities = 80/200 (40%), Positives = 121/200 (60%), Gaps = 8/200 (4%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGN-IVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
GTT VG+ DGV++A+D RASLG ++ KNV K+ +I + A++ +G VG + +R
Sbjct: 60 GTTIVGLTTQDGVLMASDMRASLGGRVISNKNVQKVEEIQPNAALSISGSVGGAQSFIRS 119
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGA---RMLPYLAWFLVGGFDEKPRLYSVDM 125
LRAEA LY A+ G+ MS+ AL+T+ +N+L G R++P L G D+ ++S+D
Sbjct: 120 LRAEANLYEARRGEYMSIDALSTMASNLLRGGPFFRVVPILG----GVDDDGGHVFSLDP 175
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMV 185
G D Y A GSGM +A VL+ EY EDL + + ++A A+ SA +RD SG+GI +
Sbjct: 176 AGSSMSDTYTAQGSGMPYALGVLEQEYSEDLTMADAEQVAAHAVKSASERDTASGNGIHI 235
Query: 186 VTITEEGYRELSNSRLKAIL 205
IT +G + + A+L
Sbjct: 236 TKITHDGLTTVGHKEFDALL 255
>gb|AAK40616.1| Proteasome subunit [Sulfolobus solfataricus]
Length = 196
Score = 143 bits (356), Expect = 2e-33
Identities = 76/185 (41%), Positives = 118/185 (63%), Gaps = 2/185 (1%)
Query: 12 TTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRA 71
T VG+ +DG+VLA++RR S G V +K K++KI++ L +AGAG GD+ L R++
Sbjct: 7 TAVGLKVNDGIVLASERRLSYGGYVLSKQAKKVYKINKFL-MAGAGIYGDLQTLTRIMNV 65
Query: 72 EAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGGIT 130
E K Y +GK +SV A A LL+ +L +++P+++ L GG DEK P+LY +D +G +
Sbjct: 66 EIKYYEVSTGKPISVHAAAKLLSVILYQYKVMPFISEILFGGVDEKGPQLYVLDPIGSLI 125
Query: 131 EDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITE 190
ED Y A GSG A VL+SEY ++ + ++ +AI ++I+RD+ SGDGI + I +
Sbjct: 126 EDNYAAVGSGARIAIGVLESEYDPNMSLDVATQLITKAIKASIERDITSGDGIDLAIIDK 185
Query: 191 EGYRE 195
+G E
Sbjct: 186 KGNYE 190
>pir||D72747 probable proteasome, beta subunit APE0507 - Aeropyrum pernix
(strain K1) >gi|5104156|dbj|BAA79472.1| (AP000059) 239aa
long hypothetical proteasome, beta subunit [Aeropyrum
pernix]
Length = 239
Score = 136 bits (339), Expect = 2e-31
Identities = 72/199 (36%), Positives = 118/199 (59%), Gaps = 2/199 (1%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
F G T +GI DGVVLAAD+R S G + ++N KI I++ + IA AG GD+ LVR
Sbjct: 39 FAGATALGIRVEDGVVLAADKRMSYGGFILSRNFKKIFVINDRIGIAFAGLYGDMGGLVR 98
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE--KPRLYSVDM 125
++ + +L ++GK +V+ +A L+++L + P+ +VGG D +P+LY +D
Sbjct: 99 IVEGQMRLASLETGKPATVRNVAKFLSSLLYSYKFFPFNVEAIVGGIDPGGEPKLYVLDP 158
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMV 185
+G I E+ YVAAG+G A+ +L+ Y+ + + E K AVEA+ +++ RD +GDGI V
Sbjct: 159 LGSIIEEDYVAAGTGATTAFGLLEHVYKRGMSLEEAKKAAVEALRASMARDAGTGDGIDV 218
Query: 186 VTITEEGYRELSNSRLKAI 204
+ + G L + + +
Sbjct: 219 LVLPVSGKPSLETIKFRLV 237
>gb|AAD22390.1|AF059493_1 (AF059493) proteasome subunit LMP7 [Sus scrofa]
Length = 260
Score = 112 bits (277), Expect = 4e-24
Identities = 68/203 (33%), Positives = 109/203 (53%), Gaps = 1/203 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++A D RAS G+ + V K+ +I+ +L +G D
Sbjct: 52 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGTMSGCAADCQYW 111
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 112 ERLLAKECRLYYLRNGERISVSAASKLLSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVD 171
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+DS +R DL + E + AI A RD +SG +
Sbjct: 172 ENGTRLSGNMFSTGSGNTYAYGVMDSGHRYDLSIEEAYDLGRRAIVHATHRDSYSGGVVN 231
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
+ + E+G+ ++ ++ + +L Q
Sbjct: 232 MYHMKEDGWVKVESTDVSDLLHQ 254
>gi|4758970 proteasome (prosome, macropain) subunit, beta type, 8 (large
multifunctional protease 7); Proteasome subunit, beta
type, 8 (large multifunctional protease-7) [Homo
sapiens] >gi|11417920|ref|XP_004223.1| proteasome
(prosome, macropain) subunit, beta type, 8 (large
multifunctional protease 7) [Homo sapiens]
>gi|1082738|pir||A44324 proteasome chain LMP7 precursor,
splice form E1 - human >gi|34637|emb|CAA47026.1|
(X66401) proteasome-related [Homo sapiens]
>gi|36057|emb|CAA44482.1| (X62598) RING10 [Homo sapiens]
>gi|38481|emb|CAA78705.1| (Z14982) proteasome subunit
LMP7 [Homo sapiens] >gi|1054746|emb|CAA60786.1| (X87344)
alternative first exon (1a) [Homo sapiens]
>gi|228159|prf||1717394A RING10 gene [Homo sapiens]
Length = 272
Score = 111 bits (274), Expect = 8e-24
Identities = 69/203 (33%), Positives = 108/203 (52%), Gaps = 1/203 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV+ A D RAS G+ + A V K+ +I+ +L +G D
Sbjct: 64 EMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYW 123
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 124 ERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVD 183
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+DS YR +L E + AI A RD +SG +
Sbjct: 184 EHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVN 243
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
+ + E+G+ ++ ++ + +L Q
Sbjct: 244 MYHMKEDGWVKVESTDVSDLLHQ 266
>pir||C44324 proteasome chain LMP7 precursor, splice form E1 - human
>gi|38482|emb|CAA78706.1| (Z14982) proteasome subunit
LMP7 [Homo sapiens] >gi|1054747|emb|CAA60787.1| (X87344)
alternative first exon (1b) [Homo sapiens]
Length = 276
Score = 111 bits (274), Expect = 8e-24
Identities = 69/203 (33%), Positives = 108/203 (52%), Gaps = 1/203 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV+ A D RAS G+ + A V K+ +I+ +L +G D
Sbjct: 68 EMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYW 127
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+DS YR +L E + AI A RD +SG +
Sbjct: 188 EHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVN 247
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
+ + E+G+ ++ ++ + +L Q
Sbjct: 248 MYHMKEDGWVKVESTDVSDLLHQ 270
>pir||G01564 proteasome chain LMP7 precursor, splice form E2 - human
>gi|596140|gb|AAA56777.1| (U17496) proteasome subunit
LMP7 [Homo sapiens]
Length = 276
Score = 111 bits (274), Expect = 8e-24
Identities = 69/203 (33%), Positives = 108/203 (52%), Gaps = 1/203 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV+ A D RAS G+ + A V K+ +I+ +L +G D
Sbjct: 68 EMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYW 127
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+DS YR +L E + AI A RD +SG +
Sbjct: 188 EHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVN 247
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
+ + E+G+ ++ ++ + +L Q
Sbjct: 248 MYHMKEDGWVKVESTDVSDLLHQ 270
>gb|AAA56778.1| (U17497) proteasome subunit LMP7 [Homo sapiens]
Length = 276
Score = 111 bits (274), Expect = 8e-24
Identities = 69/203 (33%), Positives = 108/203 (52%), Gaps = 1/203 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV+ A D RAS G+ + A V K+ +I+ +L +G D
Sbjct: 68 EMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYW 127
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+DS YR +L E + AI A RD +SG +
Sbjct: 188 EHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVN 247
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
+ + E+G+ ++ ++ + +L Q
Sbjct: 248 MYHMKEDGWVKVESTDVSDLLHQ 270
>sp|P28062|PRCY_HUMAN PROTEASOME COMPONENT C13 PRECURSOR (MACROPAIN SUBUNIT C13)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT C13)
Length = 276
Score = 111 bits (274), Expect = 8e-24
Identities = 69/203 (33%), Positives = 108/203 (52%), Gaps = 1/203 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV+ A D RAS G+ + A V K+ +I+ +L +G D
Sbjct: 68 EMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYW 127
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+DS YR +L E + AI A RD +SG +
Sbjct: 188 EHGTRLSGNMFSTGSGNTYAYGVMDSGYRPNLSPEEAYDLGRRAIAYATHRDSYSGGVVN 247
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
+ + E+G+ ++ ++ + +L Q
Sbjct: 248 MYHMKEDGWVKVESTDVSDLLHQ 270
>sp|Q60177|PRCA_METJA PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
ALPHA SUBUNIT) (20S PROTEASOME ALPHA SUBUNIT)
>gi|2118152|pir||G64373 proteasome alpha subunit homolog
- Methanococcus jannaschii >gi|1591299|gb|AAB98581.1|
(U67507) proteasome, subunit alpha (psmA) [Methanococcus
jannaschii]
Length = 261
Score = 111 bits (274), Expect = 8e-24
Identities = 61/204 (29%), Positives = 113/204 (54%), Gaps = 6/204 (2%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+GTT +GI C DGVVLA DRR + +V +++ KI +ID+H+A A +G V D L+
Sbjct: 34 RGTTAIGIACKDGVVLAVDRRIT-SKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDR 92
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNG----ARMLPYLAWFLVGGFDE-KPRLYSV 123
R EA++Y G+ +S++ LA + ++ + P+ L+ G D+ + RL+
Sbjct: 93 ARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFET 152
Query: 124 DMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGI 183
D G + E K A GSG +L+ EYR+D+ + EG+++A+ A+ A + +
Sbjct: 153 DPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDV 212
Query: 184 MVVTITEEGYRELSNSRLKAILRQ 207
++T+ + ++++ +K ++ +
Sbjct: 213 CIITVKDAQFKKIPVEEIKKLIEK 236
>sp|P28064|PRCY_RAT PROTEASOME COMPONENT C13 PRECURSOR (MACROPAIN SUBUNIT C13)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT C13) (C1)
Length = 271
Score = 111 bits (274), Expect = 8e-24
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 1/203 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++A D RAS G+ + V K+ +I+ +L +G D
Sbjct: 63 EMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYW 122
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 123 ERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVD 182
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + + GSG +AY V+DS YR+DL E +A AI A RD +SG +
Sbjct: 183 DNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDSYSGGVVN 242
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
+ + ++G+ ++ ++ + +L +
Sbjct: 243 MYHMKKDGWVKVESTDVSDLLHK 265
>pir||S21126 multicatalytic endopeptidase complex (EC 3.4.99.46) chain RC1 - rat
>gi|220881|dbj|BAA01572.1| (D10729) proteasome subunit
RC1 [Rattus sp.]
Length = 208
Score = 110 bits (273), Expect = 1e-23
Identities = 67/199 (33%), Positives = 110/199 (54%), Gaps = 1/199 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++A D RAS G+ + V K+ +I+ +L +G D RLL
Sbjct: 4 GTTTLAFKFQHGVIVAVDSRASAGSYIATIRVNKVIEINPYLLGTMSGCAADCQYWERLL 63
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD G
Sbjct: 64 AKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGT 123
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ + GSG +AY V+DS YR+DL E +A AI A RD +SG + + +
Sbjct: 124 RLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLARRAIVYATHRDSYSGGVVNMYHM 183
Query: 189 TEEGYRELSNSRLKAILRQ 207
++G+ ++ ++ + +L +
Sbjct: 184 KKDGWVKVESTDVSDLLHK 202
>sp|P28063|PRCY_MOUSE PROTEASOME COMPONENT C13 PRECURSOR (MACROPAIN SUBUNIT C13)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT C13)
>gi|2137569|pir||I54513 multicatalytic endopeptidase
complex (EC 3.4.99.46) type beta chain MC13 - mouse
>gi|494969|gb|AAB46392.1| (L11145) lmp7 [Mus musculus]
>gi|582390|emb|CAA45779.1| (X64449) proteasome subunit
MC13 [Mus musculus] >gi|972982|gb|AAA75033.1| (U22031)
20S proteasome subunit Lmp7 [Mus musculus]
>gi|972984|gb|AAA75034.1| (U22032) 20S proteasome
subunit Lmp7 [Mus musculus] >gi|2555193|gb|AAB81532.1|
(AF027865) 20S proteosome subunit lmp7 [Mus musculus]
Length = 276
Score = 110 bits (272), Expect = 1e-23
Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 1/201 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++A D RA+ G+ + + + K+ +I+ +L +G D
Sbjct: 68 EMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYW 127
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + + GSG +AY V+DS YR+DL E + AI A RD +SG +
Sbjct: 188 DNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVN 247
Query: 185 VVTITEEGYRELSNSRLKAIL 205
+ + E+G+ ++ +S + +L
Sbjct: 248 MYHMKEDGWVKVESSDVSDLL 268
>gb|AAA75035.1| (U22033) 20S proteasome subunit Lmp7 [Mus musculus]
>gi|972988|gb|AAA75036.1| (U22034) 20S proteasome
subunit Lmp7 [Mus musculus]
Length = 276
Score = 110 bits (272), Expect = 1e-23
Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 1/201 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++A D RA+ G+ + + + K+ +I+ +L +G D
Sbjct: 68 EMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYW 127
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + + GSG +AY V+DS YR+DL E + AI A RD +SG +
Sbjct: 188 DNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVN 247
Query: 185 VVTITEEGYRELSNSRLKAIL 205
+ + E+G+ ++ +S + +L
Sbjct: 248 MYHMKEDGWVKVESSDVSDLL 268
>gb|AAA75037.1| (U22035) 20S proteasome subunit Lmp7 [Mus musculus]
Length = 276
Score = 110 bits (272), Expect = 1e-23
Identities = 67/201 (33%), Positives = 110/201 (54%), Gaps = 1/201 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++A D RA+ G+ + + + K+ +I+ +L +G D
Sbjct: 68 EMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYW 127
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + + GSG +AY V+DS YR+DL E + AI A RD +SG +
Sbjct: 188 DNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVN 247
Query: 185 VVTITEEGYRELSNSRLKAIL 205
+ + E+G+ ++ +S + +L
Sbjct: 248 MYHMKEDGWVKVESSDVSDLL 268
>emb|CAA45780.1| (X64449) proteasome subunit MC13 [Mus musculus]
Length = 208
Score = 109 bits (271), Expect = 2e-23
Identities = 66/197 (33%), Positives = 109/197 (54%), Gaps = 1/197 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++A D RA+ G+ + + + K+ +I+ +L +G D RLL
Sbjct: 4 GTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLL 63
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD G
Sbjct: 64 AKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVDDNGT 123
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ + GSG +AY V+DS YR+DL E + AI A RD +SG + + +
Sbjct: 124 RLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSGGVVNMYHM 183
Query: 189 TEEGYRELSNSRLKAIL 205
E+G+ ++ +S + +L
Sbjct: 184 KEDGWVKVESSDVSDLL 200
>dbj|BAB02194.1| (AP001298) proteasome epsilon chain precursor [Arabidopsis
thaliana]
Length = 273
Score = 109 bits (271), Expect = 2e-23
Identities = 68/197 (34%), Positives = 109/197 (54%), Gaps = 1/197 (0%)
Query: 2 LQLTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGD 61
+++ + KGTTT+ + +GV++AAD RAS+G + +++V KI +I+ ++ AG D
Sbjct: 49 VEMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 108
Query: 62 ILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRL 120
R L + +L+ + +R+SV + LLANML R + ++ G+DE P L
Sbjct: 109 CQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGL 168
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
Y VD GG + + GSG +AY VLDS Y+ D+ V E ++A +I A RD SG
Sbjct: 169 YYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASG 228
Query: 181 DGIMVVTITEEGYRELS 197
V + +G+ +LS
Sbjct: 229 GVASVYHVGPQGWTKLS 245
>dbj|BAA95591.1| (AB035496) 20S proteasome beta 6 subunit [Carassius auratus]
Length = 238
Score = 109 bits (270), Expect = 2e-23
Identities = 60/199 (30%), Positives = 105/199 (52%), Gaps = 11/199 (5%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
F G T + + D ++A+D R S G +++++ K +K+ + I +G GD L L +
Sbjct: 32 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTK 91
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDM 125
++ A K+Y + K M+ A+A +L+ +L G R PY + ++GG DE+ R +YS D
Sbjct: 92 IIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDP 151
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEY---------REDLKVREGIKIAVEAINSAIKRD 176
+G D Y A GS +LD++ + L + +++ + SA +RD
Sbjct: 152 VGSYQRDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERD 211
Query: 177 VFSGDGIMVVTITEEGYRE 195
V++GD + + IT+EG RE
Sbjct: 212 VYTGDALKICIITKEGIRE 230
>dbj|BAA95592.1| (AB035497) 20S proteasome beta 6 subunit [Carassius auratus]
Length = 237
Score = 109 bits (270), Expect = 2e-23
Identities = 60/199 (30%), Positives = 105/199 (52%), Gaps = 11/199 (5%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
F G T + + D ++A+D R S G +++++ K +K+ + I +G GD L L +
Sbjct: 31 FNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTK 90
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDM 125
++ A K+Y + K M+ A+A +L+ +L G R PY + ++GG DE+ R +YS D
Sbjct: 91 IIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDP 150
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEY---------REDLKVREGIKIAVEAINSAIKRD 176
+G D Y A GS +LD++ + L + +++ + SA +RD
Sbjct: 151 VGSYQRDTYKAGGSASAMLQPLLDNQIGFKNMENVEQVPLSQEKAVQLVKDVFISAAERD 210
Query: 177 VFSGDGIMVVTITEEGYRE 195
V++GD + + IT+EG RE
Sbjct: 211 VYTGDALKICIITKEGIRE 229
>sp|O24361|PRCE_SPIOL PROTEASOME EPSILON CHAIN PRECURSOR (MACROPAIN EPSILON CHAIN)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX EPSILON CHAIN)
>gi|7435872|pir||T09132 26S proteasome beta chain -
spinach >gi|2285800|dbj|BAA21650.1| (D78172) 26S
proteasome beta subunit [Spinacia oleracea]
Length = 272
Score = 109 bits (269), Expect = 3e-23
Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 1/197 (0%)
Query: 2 LQLTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGD 61
+Q+ + KGTTT+ + GV++AAD RAS+G + +++V KI +I+ ++ AG D
Sbjct: 47 VQMVKPAKGTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAAD 106
Query: 62 ILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRL 120
R L + +L+ + +R+SV + LLAN+L R + ++ G+DE P L
Sbjct: 107 CQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGL 166
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
Y VD GG + + GSG +AY VLD+ Y+ D+ V E ++A AI A RD SG
Sbjct: 167 YYVDSEGGRLKGMRFSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASG 226
Query: 181 DGIMVVTITEEGYRELS 197
+ V + +G+++++
Sbjct: 227 GVVSVYHVGPDGWKKVT 243
>gi|6755208 proteosome (prosome, macropain) subunit, beta type 8 (large
multifunctional protease 7); large multifunctional
protease 7 [Mus musculus] >gi|6249512|emb|CAB60065.1|
(Z21847) lmp7 [Mus musculus]
Length = 275
Score = 109 bits (269), Expect = 3e-23
Identities = 68/201 (33%), Positives = 111/201 (54%), Gaps = 2/201 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++A D RA+ G+ + + + K+ +I+ +L +G D
Sbjct: 68 EMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMSGCAADCQYW 127
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LYY ++G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD
Sbjct: 128 ERLLAKECRLYYLRNGERISVSAASKLLSNMMLQYRGMGLSMGSMICGWDKKGPGLYYVD 187
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + + GSG +AY V+DS YR+DL E + AI A RD +SG G++
Sbjct: 188 DNGTRLSGQMFSTGSGNTYAYGVMDSGYRQDLSPEEAYDLGRRAIAYATHRDNYSG-GVV 246
Query: 185 VVTITEEGYRELSNSRLKAIL 205
+ E+G+ ++ +S + +L
Sbjct: 247 NYHMKEDGWVKVESSDVSDLL 267
>sp|O23717|PRCE_ARATH PROTEASOME EPSILON CHAIN PRECURSOR (MACROPAIN EPSILON CHAIN)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX EPSILON CHAIN)
>gi|2511596|emb|CAA74029.1| (Y13695) multicatalytic
endopeptidase complex, proteasome precursor, beta
subunit [Arabidopsis thaliana]
>gi|3421117|gb|AAC32072.1| (AF043536) 20S proteasome
beta subunit PBE1 [Arabidopsis thaliana]
>gi|4850389|gb|AAD31059.1|AC007357_8 (AC007357)
Identical to gb|Y13695 multicatalytic endopeptidase
complex, proteasome precursor, beta subunit (prce) from
Arabidopsis thaliana. ESTs gb|Y09360, gb|F13852,
gb|T20555, gb|T44620, gb|AI099779 and gb|AA586183 come
from this gene
Length = 274
Score = 109 bits (269), Expect = 3e-23
Identities = 69/190 (36%), Positives = 104/190 (54%), Gaps = 1/190 (0%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
KGTTT+ + GV++AAD RAS+G + +++V KI +I+ ++ AG D R
Sbjct: 56 KGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 115
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMG 127
L + +L+ + +R+SV + LLANML R + ++ G+DE P LY VD G
Sbjct: 116 LGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEG 175
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
G + + GSG +AY VLDS Y+ D+ V E ++A +I A RD SG V
Sbjct: 176 GRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYH 235
Query: 188 ITEEGYRELS 197
+ EG+ +LS
Sbjct: 236 VGPEGWTKLS 245
>gb|AAF22654.1| (AF214525) interferon-gamma inducible proteasome subunit LMP7 [Bos
taurus]
Length = 193
Score = 108 bits (267), Expect = 5e-23
Identities = 65/186 (34%), Positives = 102/186 (53%), Gaps = 1/186 (0%)
Query: 21 GVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQS 80
GV++A D RAS GN + V K+ +I+ +L +G D L RLL E +LYY ++
Sbjct: 8 GVIVAVDSRASAGNYIATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRN 67
Query: 81 GKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGGITEDKYVAAGS 139
G+R+SV A + LL+NM+ R + ++ G+D+K P LY VD G + GS
Sbjct: 68 GERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGS 127
Query: 140 GMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEGYRELSNS 199
G AY V+DS YR DL + E + AI A RD +SG + + + E+G+ ++ ++
Sbjct: 128 GNSHAYGVMDSGYRPDLSIEEAYDLGRRAIVHATHRDSYSGGVVNMYHMKEDGWVKVEST 187
Query: 200 RLKAIL 205
+ +L
Sbjct: 188 DVSDLL 193
>dbj|BAA19767.1| (D89725) LMP7 [Oryzias latipes]
Length = 225
Score = 108 bits (266), Expect = 7e-23
Identities = 66/201 (32%), Positives = 103/201 (50%), Gaps = 1/201 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++A D RAS G+ + K+ +I+ +L +G D
Sbjct: 17 ELHHGTTTLSFKFKHGVIVAVDSRASTGSYIATCEYNKVIEINPYLLGTMSGSAADCKYW 76
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFD-EKPRLYSVD 124
RLL E +LY ++ R+SV A + LL NM+ G R + ++ G+D E P +Y VD
Sbjct: 77 ERLLAKECRLYRLRNNHRISVAAASKLLCNMMLGYRGMGLSVGSMICGWDKEGPGIYYVD 136
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + + GSG +AY VLDS Y+ED+ V E ++ I A RD +SG +
Sbjct: 137 DNGNRLSGRMFSTGSGSNYAYGVLDSGYKEDMTVEEAYELGRRGIVHATHRDSYSGGVVN 196
Query: 185 VVTITEEGYRELSNSRLKAIL 205
+ I E+G+ ++ + +L
Sbjct: 197 MYHIQEDGWIKVCKDDVSELL 217
>gb|AAB87679.1| (AF032390) LMP7 [Danio rerio]
Length = 271
Score = 108 bits (266), Expect = 7e-23
Identities = 63/199 (31%), Positives = 106/199 (52%), Gaps = 1/199 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++A D RAS G + +K K+ +I+ +L +G D RLL
Sbjct: 67 GTTTLAFKFRHGVIVAVDSRASAGKYIASKEANKVIEINPYLLGTMSGSAADCQYWERLL 126
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
E +LY ++ +R+SV A + LL+NM+ G R + ++ G+D++ P LY VD G
Sbjct: 127 AKECRLYKLRNKQRISVSAASKLLSNMMLGYRGMGLSMGSMICGWDKQGPGLYYVDDNGT 186
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ + G G +AY V+DS YRED+ V E ++ I A RD +SG + + +
Sbjct: 187 RLSGRMFSTGCGNSYAYGVVDSGYREDMTVEEAYELGRRGIAHATHRDAYSGGVVNLYHM 246
Query: 189 TEEGYRELSNSRLKAILRQ 207
E+G+ ++ + ++ +
Sbjct: 247 QEDGWIKVCKEDVSELIHR 265
>pir||B75181 multicatalytic endopeptidase complex (EC 3.4.99.46) alpha chain
PAB0417 - Pyrococcus abyssi (strain Orsay)
>gi|5458039|emb|CAB49529.1| (AJ248284) proteasome,
subunit alpha (EC 3.4.99.46) (psmA) [Pyrococcus abyssi]
Length = 260
Score = 108 bits (266), Expect = 7e-23
Identities = 61/201 (30%), Positives = 108/201 (53%), Gaps = 5/201 (2%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+G T VG+ C DGVVLA ++R + ++ ++ KI +ID+H+A A +G + D LV
Sbjct: 35 RGATAVGVKCKDGVVLAVEKRIT-SRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNR 93
Query: 69 LRAEAKLYYAQSGK----RMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVD 124
R EA+++ G+ + VK + L + P+ A L+ G ++KP LY D
Sbjct: 94 ARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNDKPELYETD 153
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G K VA GSG A ++ + +YR+D+ + E IK+A+ A+ +++ +
Sbjct: 154 PSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTMEKPSAENIEVA 213
Query: 185 VVTITEEGYRELSNSRLKAIL 205
V+T+ ++ +R+LS ++ L
Sbjct: 214 VITVKDKKFRKLSKEEIEKFL 234
>sp|O59219|PRCA_PYRHO PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
ALPHA SUBUNIT) >gi|7435878|pir||A71033 probable
proteasome, alpha subunit - Pyrococcus horikoshii
>gi|3257982|dbj|BAA30665.1| (AP000006) 260aa long
hypothetical proteasome, alpha subunit [Pyrococcus
horikoshii]
Length = 260
Score = 108 bits (266), Expect = 7e-23
Identities = 59/203 (29%), Positives = 110/203 (54%), Gaps = 5/203 (2%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+G T VG+ C++GVVLA ++R + ++ ++ KI +ID+H+A A +G + D LV
Sbjct: 35 RGATAVGVKCNEGVVLAVEKRIT-SRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNR 93
Query: 69 LRAEAKLYYAQSGK----RMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVD 124
R EA+++ G+ + VK + L + P+ A L+ G +EKP LY D
Sbjct: 94 ARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNEKPELYETD 153
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G K VA GSG A ++ + +Y++D+ + E IK+A+ A+ +++ +
Sbjct: 154 PSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTMEKPSAENIEVA 213
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
++T+ ++ +R+LS ++ L +
Sbjct: 214 IITVKDKKFRKLSREEIEKYLNE 236
>dbj|BAA10935.1| (D64058) nurse shark LMPX [Ginglymostoma cirratum]
Length = 259
Score = 107 bits (264), Expect = 1e-22
Identities = 64/189 (33%), Positives = 104/189 (54%), Gaps = 1/189 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+G + GV++A D RA+ G+ V ++ V K+ +I+ +L AG D
Sbjct: 51 EILHGTTTLGFRFAHGVIVAVDSRATAGSYVASQTVKKVIEINPYLLGTMAGGAADCSFW 110
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL + ++Y ++ +R+SV A + LLANM+ + + ++ G+D++ P LY VD
Sbjct: 111 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVD 170
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + + GSG +AY VLD YR D+ E ++A +AI A RD +SG +
Sbjct: 171 SEGNRVSGQIFSVGSGSVYAYGVLDRAYRHDMSPTEAYELAKQAIYHATYRDAYSGGIVS 230
Query: 185 VVTITEEGY 193
+ + E G+
Sbjct: 231 LYHVKETGW 239
>gb|AAF26416.1|AF217726_1 (AF217726) 20S proteasome beta5 subunit [Drosophila melanogaster]
Length = 282
Score = 107 bits (264), Expect = 1e-22
Identities = 65/191 (34%), Positives = 109/191 (57%), Gaps = 1/191 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+G GV+LA D RA+ G+ + ++++ KI +I++ + AG D + R+L
Sbjct: 73 GTTTLGFKFKGGVLLAVDSRATGGSYIGSQSMKKIVEINQFMLGTLAGGAADCVYWDRVL 132
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
E +L+ ++ +R+SV A + ++AN+ + + + ++ G+D++ P LY VD G
Sbjct: 133 SKECRLHELRNKERISVAAASKIMANIAHEYKGMGLSMGMMLAGYDKRGPGLYYVDSEGS 192
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
T + GSG +AY VLDS Y DL+ +E ++ AI A RD +SG I V I
Sbjct: 193 RTPGNLFSVGSGSLYAYGVLDSGYHWDLEDKEAQELGRRAIYHATFRDAYSGGIIRVYHI 252
Query: 189 TEEGYRELSNS 199
E+G+ +SN+
Sbjct: 253 KEDGWVNISNT 263
>gb|AAF58748.1| (AE003828) Prosbeta5 gene product [Drosophila melanogaster]
Length = 282
Score = 107 bits (264), Expect = 1e-22
Identities = 65/191 (34%), Positives = 109/191 (57%), Gaps = 1/191 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+G GV+LA D RA+ G+ + ++++ KI +I++ + AG D + R+L
Sbjct: 73 GTTTLGFKFKGGVLLAVDSRATGGSYIGSQSMKKIVEINQFMLGTLAGGAADCVYWDRVL 132
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
E +L+ ++ +R+SV A + ++AN+ + + + ++ G+D++ P LY VD G
Sbjct: 133 SKECRLHELRNKERISVAAASKIMANIAHEYKGMGLSMGMMLAGYDKRGPGLYYVDSEGS 192
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
T + GSG +AY VLDS Y DL+ +E ++ AI A RD +SG I V I
Sbjct: 193 RTPGNLFSVGSGSLYAYGVLDSGYHWDLEDKEAQELGRRAIYHATFRDAYSGGIIRVYHI 252
Query: 189 TEEGYRELSNS 199
E+G+ +SN+
Sbjct: 253 KEDGWVNISNT 263
>pir||I52906 proteasome subunit MB1 - human (fragment) >gi|786582|gb|AAB33092.1|
(S74378) proteasome subunit MB1=LMP7 homolog [human, JY
T-cells, Peptide Partial, 215 aa] [Homo sapiens]
Length = 215
Score = 106 bits (263), Expect = 2e-22
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 1/197 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++AAD RA+ G + ++ V K+ +I+ +L AG GD
Sbjct: 7 EMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAGDCSFW 66
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL + ++Y ++ +R+SV A + LLANM+ + + ++ G+D++ P LY VD
Sbjct: 67 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGSMICGWDKRGPGLYYVD 126
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+D Y DL+V + +A AI A RD +SG +
Sbjct: 127 SEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVN 186
Query: 185 VVTITEEGYRELSNSRL 201
+ + E+G+ +S+ +
Sbjct: 187 LYHVREDGWIRVSSDNV 203
>gi|6755204 proteasome beta type subunit 5 [Mus musculus]
>gi|2897806|dbj|BAA24916.1| (AB003304) PSMB5 [Mus
musculus] >gi|2897809|dbj|BAA24917.1| (AB003306) PSMB5
[Mus musculus] >gi|5757659|gb|AAD50536.1|AF060091_1
(AF060091) proteasome subunit X [Mus musculus]
Length = 264
Score = 106 bits (263), Expect = 2e-22
Identities = 65/197 (32%), Positives = 105/197 (52%), Gaps = 1/197 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++AAD RA+ G + ++ V K+ +I+ +L AG D
Sbjct: 55 EMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 114
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL + ++Y ++ +R+SV A + LLANM+ + + ++ G+D++ P LY VD
Sbjct: 115 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVD 174
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+D Y DLKV E +A AI A RD +SG +
Sbjct: 175 SEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVN 234
Query: 185 VVTITEEGYRELSNSRL 201
+ + E+G+ +S+ +
Sbjct: 235 LYHVREDGWIRVSSDNV 251
>dbj|BAA10933.1| (D64056) LMP7 of nurse shark [Ginglymostoma cirratum]
Length = 274
Score = 106 bits (262), Expect = 2e-22
Identities = 64/189 (33%), Positives = 104/189 (54%), Gaps = 1/189 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++A D RAS G+ + + K+ +I+ +L +G D + R+L
Sbjct: 70 GTTTLAFKFQHGVMVAVDSRASAGSYISTQMFKKVIEINPYLLGTMSGSAADCVFWERML 129
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ ++Y ++ KR+SV A + LLANM++ + + ++ G+DEK P LY V+ G
Sbjct: 130 AKQCRIYKLRNKKRISVSAASKLLANMVSEYKGMGLSMGTMICGWDEKGPGLYYVNDGGM 189
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ GSG +AY V+DS YR DL V+E +A AI A RD +SG + + +
Sbjct: 190 RLSGSMFSTGSGCSYAYGVMDSGYRYDLTVKEAYDLAQRAIYHATHRDAYSGGTVNMYHM 249
Query: 189 TEEGYRELS 197
E G+ ++S
Sbjct: 250 RENGWIKVS 258
>dbj|BAA10932.1| (D64055) LMPX of lamprey [Petromyzon marinus]
Length = 273
Score = 105 bits (260), Expect = 4e-22
Identities = 64/189 (33%), Positives = 104/189 (54%), Gaps = 1/189 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++A D RA+ G+ + ++ V K+ +I+ +L AG D + R+L
Sbjct: 70 GTTTLAFKFQHGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCMYWERVL 129
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ ++Y ++ +R+SV A + LLANM+ + + ++ G+D+K P LY VD G
Sbjct: 130 AKQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKKGPGLYYVDDEGM 189
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
A GSG +A+ VLDS YREDL E + AI SA RD +SG + + +
Sbjct: 190 RLPGSMFAVGSGSPYAFGVLDSGYREDLSKEEAYDLGRRAIASATHRDAYSGGVVNLYHM 249
Query: 189 TEEGYRELS 197
+ G+ ++S
Sbjct: 250 CQTGWIKVS 258
>sp|O55234|PRCE_MOUSE PROTEASOME EPSILON CHAIN PRECURSOR (MACROPAIN EPSILON CHAIN)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX EPSILON CHAIN)
(PROTEASOME SUBUNIT X) (PROTEASOME CHAIN 6)
Length = 209
Score = 105 bits (260), Expect = 4e-22
Identities = 64/193 (33%), Positives = 104/193 (53%), Gaps = 1/193 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++AAD RA+ G + ++ V K+ +I+ +L AG D RLL
Sbjct: 4 GTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 63
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ ++Y ++ +R+SV A + LLANM+ + + ++ G+D++ P LY VD G
Sbjct: 64 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGN 123
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ GSG +AY V+D Y DLKV E +A AI A RD +SG + + +
Sbjct: 124 RISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHV 183
Query: 189 TEEGYRELSNSRL 201
E+G+ +S+ +
Sbjct: 184 REDGWIRVSSDNV 196
>gi|4506193 proteasome (prosome, macropain) subunit, beta type, 1 [Homo
sapiens] >gi|130853|sp|P20618|PRC5_HUMAN PROTEASOME
COMPONENT C5 (MACROPAIN SUBUNIT C5) (PROTEASOME GAMMA
CHAIN) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT C5)
>gi|67732|pir||SNHUC5 multicatalytic endopeptidase
complex (EC 3.4.99.46) beta chain C5 - human
>gi|220026|dbj|BAA00658.1| (D00761) proteasome subunit
C5 [Homo sapiens] >gi|3790135|emb|CAA20287.1| (AL031259)
dJ191N21.3 (proteasome subunit HC5) [Homo sapiens]
Length = 241
Score = 105 bits (259), Expect = 5e-22
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 11/199 (5%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
F G T + I D ++A+D R S G ++ ++ K +K+ + I +G GD L L +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE--KPRLYSVDM 125
++ A K+Y + K M+ A+A +L+ +L R PY + ++GG DE K +YS D
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 154
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEY---------REDLKVREGIKIAVEAINSAIKRD 176
+G D + A GS +LD++ L + +++ + SA +RD
Sbjct: 155 VGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERD 214
Query: 177 VFSGDGIMVVTITEEGYRE 195
V++GD + + +T+EG RE
Sbjct: 215 VYTGDALRICIVTKEGIRE 233
>emb|CAC13117.1| (AJ271723) low molecular mass polypeptide subunit PSMB8 [Takifugu
rubripes]
Length = 272
Score = 105 bits (259), Expect = 5e-22
Identities = 62/184 (33%), Positives = 100/184 (53%), Gaps = 2/184 (1%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++A D RAS G + +++ K+ +I+ +L +G D + RLL
Sbjct: 71 GTTTLAFKFKHGVIVAVDSRASAGKYISSQDAKKVIEINSYLLGTMSGSAADCMYWERLL 130
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGI 129
E +LY ++ R+SV A + LLANM+ G R + ++ G+D+ +LY VD G
Sbjct: 131 AKECRLYRLRNNHRISVAAASKLLANMMLGYRGMGLSVGSMICGWDK--QLYYVDENGNR 188
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTIT 189
+ + GSG +AY+V+DS RED+ V E + I A RD +SG + + +
Sbjct: 189 FSGQMFSTGSGNSYAYAVVDSGLREDMTVEEAYDLGRRGIVYATHRDAYSGGVVNMYHMM 248
Query: 190 EEGY 193
E+G+
Sbjct: 249 EDGW 252
>gi|11419067 proteasome (prosome, macropain) subunit, beta type, 1 [Homo
sapiens]
Length = 241
Score = 105 bits (259), Expect = 5e-22
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 11/199 (5%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
F G T + I D ++A+D R S G ++ ++ K +K+ + I +G GD L L +
Sbjct: 35 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 94
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE--KPRLYSVDM 125
++ A K+Y + K M+ A+A +L+ +L R PY + ++GG DE K +YS D
Sbjct: 95 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 154
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEY---------REDLKVREGIKIAVEAINSAIKRD 176
+G D + A GS +LD++ L + +++ + SA +RD
Sbjct: 155 VGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAERD 214
Query: 177 VFSGDGIMVVTITEEGYRE 195
V++GD + + +T+EG RE
Sbjct: 215 VYTGDALRICIVTKEGIRE 233
>gb|AAC97957.1| (AF104214) proteasome beta 5 subunit [Trypanosoma cruzi]
Length = 241
Score = 104 bits (258), Expect = 6e-22
Identities = 66/190 (34%), Positives = 103/190 (53%), Gaps = 1/190 (0%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
KGTTT+G G++LA D RAS G + ++ V K+ +I+E+L AG D R+
Sbjct: 39 KGTTTLGFHFDGGIILAVDSRASSGQYISSQTVMKVLEINEYLLGTMAGGAADCQYWERV 98
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE-KPRLYSVDMMG 127
L E +L+ ++ R+SV A + +LAN+ R +V G+D+ P LY VD G
Sbjct: 99 LGMECRLWELRNNCRISVAAASKILANITYSYRNYGLSMGTMVAGWDQFGPSLYYVDDKG 158
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ + + GSG +AY VLD YR++L V E ++A +I A RD SG + V
Sbjct: 159 TRVKHELFSVGSGSIYAYGVLDQGYRKNLTVEEACELARRSIFHATYRDGASGGIVTVYH 218
Query: 188 ITEEGYRELS 197
+ + G+ ++S
Sbjct: 219 VHQGGWTQIS 228
>gi|7242197 proteasome (prosome, macropain) subunit, beta type 1 [Mus musculus]
>gi|2499837|sp|O09061|PRC5_MOUSE PROTEASOME COMPONENT C5
(MACROPAIN SUBUNIT C5) (PROTEASOME GAMMA CHAIN)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT C5)
>gi|1165122|emb|CAA56701.1| (X80686) component C5 of
proteasome [Mus musculus] >gi|1698584|gb|AAB37251.1|
(U60824) proteasome beta-subunit C5 [Mus musculus]
Length = 240
Score = 104 bits (257), Expect = 8e-22
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 11/199 (5%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
F G T + I D ++A+D R S G ++ ++ K +K+ + I +G GD L L +
Sbjct: 34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE--KPRLYSVDM 125
++ A K+Y + K M+ A+A +L+ +L R PY + ++GG DE K +YS D
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 153
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEY---------REDLKVREGIKIAVEAINSAIKRD 176
+G D + A GS +LD++ L + +++ + SA +RD
Sbjct: 154 VGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERD 213
Query: 177 VFSGDGIMVVTITEEGYRE 195
V++GD + + +T+EG RE
Sbjct: 214 VYTGDALRICIVTKEGIRE 232
>emb|CAA56702.1| (X80686) component C5 of proteasome [Mus musculus]
Length = 225
Score = 104 bits (257), Expect = 8e-22
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 11/199 (5%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
F G T + I D ++A+D R S G ++ ++ K +K+ + I +G GD L L +
Sbjct: 19 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 78
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE--KPRLYSVDM 125
++ A K+Y + K M+ A+A +L+ +L R PY + ++GG DE K +YS D
Sbjct: 79 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDP 138
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEY---------REDLKVREGIKIAVEAINSAIKRD 176
+G D + A GS +LD++ L + +++ + SA +RD
Sbjct: 139 VGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERD 198
Query: 177 VFSGDGIMVVTITEEGYRE 195
V++GD + + +T+EG RE
Sbjct: 199 VYTGDALRICIVTKEGIRE 217
>gi|4506201 proteasome (prosome, macropain) subunit, beta type, 5; Proteasome
subunit, beta type, 5; X [Homo sapiens]
>gi|11437533|ref|XP_007514.1| proteasome (prosome,
macropain) subunit, beta type, 5 [Homo sapiens]
>gi|1262338|emb|CAA64838.1| (X95586) proteasome [Homo
sapiens]
Length = 263
Score = 104 bits (257), Expect = 8e-22
Identities = 63/197 (31%), Positives = 105/197 (52%), Gaps = 1/197 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++AAD RA+ G + ++ V K+ +I+ +L AG D
Sbjct: 55 EMLHGTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 114
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL + ++Y ++ +R+SV A + LLANM+ + + ++ G+D++ P LY VD
Sbjct: 115 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVD 174
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+D Y DL+V + +A AI A RD +SG +
Sbjct: 175 SEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVN 234
Query: 185 VVTITEEGYRELSNSRL 201
+ + E+G+ +S+ +
Sbjct: 235 LYHVREDGWIRVSSDNV 251
>sp|P28074|PRCE_HUMAN PROTEASOME EPSILON CHAIN PRECURSOR (MACROPAIN EPSILON CHAIN)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX EPSILON CHAIN)
(PROTEASOME SUBUNIT X) (PROTEASOME CHAIN 6) (PROTEASOME
SUBUNIT MB1) >gi|1362908|pir||A54589 multicatalytic
endopeptidase complex (EC 3.4.99.46) chain X - human
>gi|558526|dbj|BAA06097.1| (D29011) proteasome subunit X
[Homo sapiens]
Length = 208
Score = 103 bits (254), Expect = 2e-21
Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 1/193 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++AAD RA+ G + ++ V K+ +I+ +L AG D RLL
Sbjct: 4 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 63
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ ++Y ++ +R+SV A + LLANM+ + + ++ G+D++ P LY VD G
Sbjct: 64 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGN 123
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ GSG +AY V+D Y DL+V + +A AI A RD +SG + + +
Sbjct: 124 RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHV 183
Query: 189 TEEGYRELSNSRL 201
E+G+ +S+ +
Sbjct: 184 REDGWIRVSSDNV 196
>sp|P28075|PRCE_RAT PROTEASOME EPSILON CHAIN PRECURSOR (MACROPAIN EPSILON CHAIN)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX EPSILON CHAIN)
(PROTEASOME SUBUNIT X) (PROTEASOME CHAIN 6)
>gi|639871|dbj|BAA08204.1| (D45247) proteasome subunit
RCX [Rattus rattus]
Length = 208
Score = 103 bits (254), Expect = 2e-21
Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 1/193 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++AAD RA+ G + ++ V K+ +I+ +L AG D RLL
Sbjct: 4 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 63
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ ++Y ++ +R+SV A + LLANM+ + + ++ G+D++ P LY VD G
Sbjct: 64 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGN 123
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ GSG +A+ V+D Y DL+V E +A AI A RD +SG + + +
Sbjct: 124 RISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHV 183
Query: 189 TEEGYRELSNSRL 201
E+G+ +S+ +
Sbjct: 184 REDGWIRVSSDNV 196
>gb|AAF46978.1| (AE003460) CG9868 gene product [Drosophila melanogaster]
Length = 315
Score = 103 bits (254), Expect = 2e-21
Identities = 61/191 (31%), Positives = 103/191 (52%), Gaps = 1/191 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+G GV+L AD RA+ G + ++ + KI ++++++ AG D + R+L
Sbjct: 71 GTTTLGFKYRGGVILCADSRATSGQYIGSQTMRKIVELNDYMLGTLAGGAADCVYWDRVL 130
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGF-DEKPRLYSVDMMGG 128
E +L+ + KRM+V A ++ N+ + + + ++ GF DE P+L VD G
Sbjct: 131 AKECRLHQLRYRKRMTVDTAARIICNISTEYKGMGLVMGMMLAGFDDEGPKLIYVDSEGM 190
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ + + GSG +A VLD+ YR DL +E +A AI A +D +SG + + I
Sbjct: 191 RSHGQVFSVGSGSPYALGVLDTGYRYDLSDQEAYDLARRAIYHATSKDAYSGGIVRLYHI 250
Query: 189 TEEGYRELSNS 199
EG+R + N+
Sbjct: 251 HSEGWRNICNT 261
>pir||S30539 multicatalytic endopeptidase complex (EC 3.4.99.46) chain C1 -
chicken (fragment) >gi|62972|emb|CAA40494.1| (X57210)
proteasome C1 subunit [Gallus gallus]
Length = 204
Score = 102 bits (253), Expect = 2e-21
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 1/190 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ + GVV+A D RA+ G+ + ++ V K+ +I+ L AG D RLL
Sbjct: 3 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLL 62
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ ++Y ++ + +SV A + LLANM+ + + ++ G+D++ P LY VD G
Sbjct: 63 ARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGT 122
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ A GSG +AY VLD R D+ E +++A AI A +RD +SG + V +
Sbjct: 123 RIPGEAFAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHV 182
Query: 189 TEEGYRELSN 198
G+R +S+
Sbjct: 183 GPRGWRRVSS 192
>sp|P34065|PRCE_CHICK PROTEASOME CHAIN 1 PRECURSOR (MACROPAIN CHAIN 1) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX CHAIN 1)
>gi|1906303|dbj|BAA19471.1| (AB001935) proteasome C1
subunit [Gallus gallus]
Length = 256
Score = 102 bits (253), Expect = 2e-21
Identities = 63/190 (33%), Positives = 103/190 (54%), Gaps = 1/190 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ + GVV+A D RA+ G+ + ++ V K+ +I+ L AG D RLL
Sbjct: 55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLL 114
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ ++Y ++ + +SV A + LLANM+ + + ++ G+D++ P LY VD G
Sbjct: 115 ARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGT 174
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ A GSG +AY VLD R D+ E +++A AI A +RD +SG + V +
Sbjct: 175 RIPGEAFAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHV 234
Query: 189 TEEGYRELSN 198
G+R +S+
Sbjct: 235 GPRGWRRVSS 244
>dbj|BAA96838.1| (AB026567) beta 5 subunit of 20S proteasome [Oryza sativa]
Length = 277
Score = 102 bits (252), Expect = 3e-21
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 1/190 (0%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
KGTTT+ + GV++AAD RAS+G + ++ V KI +I+ ++ AG D R
Sbjct: 59 KGTTTLAFIFDKGVIVAADSRASMGGYISSQTVRKIIEINPYMLGTMAGGAADCQFWHRN 118
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMG 127
L + +L+ + +R+S+ + LLAN+L R + ++ G+DEK P LY VD G
Sbjct: 119 LGIKCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLYYVDSEG 178
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ GSG +AY +LD YR + V E ++A AI A RD SG + V
Sbjct: 179 ARLMGSRFSVGSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATFRDGASGGCVSVYH 238
Query: 188 ITEEGYRELS 197
+ G+ +LS
Sbjct: 239 VGPNGWTKLS 248
>emb|CAA66313.1| (X97729) LMP7-like protein [Botryllus schlosseri]
Length = 257
Score = 102 bits (251), Expect = 4e-21
Identities = 60/191 (31%), Positives = 104/191 (54%), Gaps = 1/191 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GVV+A D RA+ G+ + ++ V K+ +I+ +L AG D + R+L
Sbjct: 56 GTTTLAFKFQHGVVVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCMFWERVL 115
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ ++Y ++ +R+SV A + +LANM+ + + ++ G+D+ P L+ VD G
Sbjct: 116 AKQCRIYELRNKERISVAAASKILANMVYNYKGMGLSMGTMICGWDKHGPGLFYVDSDGQ 175
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ + GSG +AY V+DS YR DL V E + + +I A RD +SG + + +
Sbjct: 176 RLKGNMFSVGSGSTYAYGVMDSGYRYDLSVAEALDLGKRSIYHATHRDAYSGGVVNLYHM 235
Query: 189 TEEGYRELSNS 199
E G+ +S +
Sbjct: 236 KETGWEFISQT 246
>dbj|BAA10934.1| (D64057) LMP7 [Ginglymostoma cirratum]
Length = 278
Score = 101 bits (250), Expect = 5e-21
Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 1/189 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++A D RAS GN + + + K+ +I+ +L +G D RLL
Sbjct: 70 GTTTLAFKFQHGVIVAVDSRASAGNYLASVDANKVIEINPYLLGTMSGSAADCQYWERLL 129
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ +LY ++ +R+SV A + LL+NM+ R + ++ G+D+K P LY VD G
Sbjct: 130 AKQCRLYKLRNKQRISVSAASKLLSNMMCEYRGMGLSMGSMICGWDKKGPGLYYVDDNGT 189
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ G G +AY V+DS YR DL V E + AI A RD ++G + + +
Sbjct: 190 RLSGNMFSTGCGNVYAYGVVDSGYRYDLTVEEAYDLGRRAIYHATHRDAYTGGFVNMYHM 249
Query: 189 TEEGYRELS 197
E+G+ ++S
Sbjct: 250 REDGWIKVS 258
>pir||JC5074 proteasome epsilon chain precursor - Botryllus schlosseri
Length = 258
Score = 101 bits (250), Expect = 5e-21
Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 1/187 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GVV+A D RA+ G+ + ++ V K+ +I+ +L AG D + R+L
Sbjct: 56 GTTTLAFKFQHGVVVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCMFWERVL 115
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
+ ++Y ++ +R+SV A + +LANM+ + + ++ G+D+ P L+ VD G
Sbjct: 116 AKQCRIYELRNKERISVAAASKILANMVYNYKGMGLSMGTMICGWDKHGPGLFYVDSDGQ 175
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ + GSG +AY V+DS YR DL V E + + +I A RD +SG + + +
Sbjct: 176 RLKGNMFSVGSGSTYAYGVMDSGYRYDLSVAEALDLGKRSIYHATHRDAYSGGVVNLYHM 235
Query: 189 TEEGYRE 195
E G+ E
Sbjct: 236 KETGWPE 242
>gb|AAF37285.1|AF226674_1 (AF226674) 20S proteasome beta 5 subunit [Trypanosoma brucei]
Length = 250
Score = 101 bits (250), Expect = 5e-21
Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 1/190 (0%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
KGTTT+G G+++A D RAS G + ++ V K+ +I+E+L AG D R+
Sbjct: 45 KGTTTLGFHFDGGIIIAVDSRASSGQYISSQTVMKVLEINEYLLGTMAGGAADCQYWERV 104
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE-KPRLYSVDMMG 127
L E +L+ ++ R+SV A + +LAN+ R +V G+D+ P LY VD G
Sbjct: 105 LGMECRLWELRNNCRISVAAASKILANITYQYRNHGLSMGTMVAGWDQFGPSLYYVDDKG 164
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ + + GSG +AY VLD YR++L V E +A +I A RD SG + V
Sbjct: 165 TRVKHEIFSVGSGSIYAYGVLDQGYRKNLTVEEACDLARRSIFHATYRDGASGGIVTVYH 224
Query: 188 ITEEGYRELS 197
+ +G+ ++S
Sbjct: 225 VHPKGWTQIS 234
>emb|CAC08538.1| (AJ132959) proteasome PRCE (beta-5) subunit precursor [Trypanosoma
brucei]
Length = 310
Score = 101 bits (250), Expect = 5e-21
Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 1/190 (0%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
KGTTT+G G+++A D RAS G + ++ V K+ +I+E+L AG D R+
Sbjct: 105 KGTTTLGFHFDGGIIIAVDSRASSGQYISSQTVMKVLEINEYLLGTMAGGAADCQYWERV 164
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE-KPRLYSVDMMG 127
L E +L+ ++ R+SV A + +LAN+ R +V G+D+ P LY VD G
Sbjct: 165 LGMECRLWELRNNCRISVAAASKILANITYQYRNHGLSMGTMVAGWDQFGPSLYYVDDKG 224
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ + + GSG +AY VLD YR++L V E +A +I A RD SG + V
Sbjct: 225 TRVKHEIFSVGSGSIYAYGVLDQGYRKNLTVEEACDLARRSIFHATYRDGASGGIVTVYH 284
Query: 188 ITEEGYRELS 197
+ +G+ ++S
Sbjct: 285 VHPKGWTQIS 294
>sp|P18421|PRC5_RAT PROTEASOME COMPONENT C5 (MACROPAIN SUBUNIT C5) (PROTEASOME GAMMA
CHAIN) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT C5)
>gi|112213|pir||S09696 multicatalytic endopeptidase
complex (EC 3.4.99.46) chain C5 - rat
>gi|56998|emb|CAA36987.1| (X52783) proteasome subunit
RC5 [Rattus norvegicus]
Length = 240
Score = 101 bits (249), Expect = 7e-21
Identities = 57/199 (28%), Positives = 100/199 (49%), Gaps = 11/199 (5%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
F G T + I D ++A+D R S G ++ ++ K +K+ + I +G GD L L +
Sbjct: 34 FNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTK 93
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE--KPRLYSVDM 125
++ A K+Y + K M+ A+A +L+ +L R PY + ++ G DE K +YS D
Sbjct: 94 IIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDP 153
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEY---------REDLKVREGIKIAVEAINSAIKRD 176
+G D + A GS +LD++ L + +++ + SA +RD
Sbjct: 154 VGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAAERD 213
Query: 177 VFSGDGIMVVTITEEGYRE 195
V++GD + + +T+EG RE
Sbjct: 214 VYTGDALRICIVTKEGIRE 232
>pir||T43887 proteasome alpha chain [imported] - Thermococcus sp
>gi|2398843|dbj|BAA22211.1| (AB001084) proteasome alpha
subunit [Thermococcus sp. KS-1]
Length = 260
Score = 101 bits (248), Expect = 9e-21
Identities = 59/203 (29%), Positives = 104/203 (51%), Gaps = 5/203 (2%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+G T VG+ DGVVLA ++R + ++ + KI ID+H+A A +G + D LV
Sbjct: 35 RGATAVGVKWKDGVVLAVEKRIT-SKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDR 93
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNG----ARMLPYLAWFLVGGFDEKPRLYSVD 124
R EA++Y G+ + + L + ++ + P+ A L+ G +EKP L+ D
Sbjct: 94 ARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEKPELFETD 153
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G E K VA GSG A ++ + YR+D+ + IK+A+ A+ ++ G +
Sbjct: 154 PSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEPTAEGIEVA 213
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
+T+ E+ +++L L+ L +
Sbjct: 214 YITMDEKRWKKLPREELEKYLNE 236
>gb|AAF49685.1| (AE003532) Prosbeta2 gene product [Drosophila melanogaster]
Length = 272
Score = 101 bits (248), Expect = 9e-21
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 4/194 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VGI+ DGV+L AD RA+ G IV KN KIH + +++ GAG D L+
Sbjct: 39 GTTIVGIIYKDGVILGADTRATEGPIVSDKNCAKIHYLAKNIYCCGAGTAADTEMTTDLI 98
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLV-GGFDEK-PRLYSVDMMG 127
++ +L+ Q+ + + V A T+L ML R +++ LV GG D+ P +YS+ G
Sbjct: 99 SSQLELHRLQTDREVRVVAANTMLKQML--FRYQGHISAALVLGGVDKTGPHIYSIHPHG 156
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ Y GSG A +V +S ++ DL EG K+ +AI S + D+ SG I +
Sbjct: 157 SSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEGKKLVRDAIASGVFNDLGSGSNIDLCV 216
Query: 188 ITEEGYRELSNSRL 201
I + L N L
Sbjct: 217 IRKGSVEYLRNYEL 230
>emb|CAB96046.1| (AJ404677) proteasome beta 2 subunit [Giardia intestinalis]
Length = 238
Score = 101 bits (248), Expect = 9e-21
Identities = 61/202 (30%), Positives = 115/202 (56%), Gaps = 6/202 (2%)
Query: 1 MLQLTEKFK--GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGD 58
+ + ++ FK GTT +G+ GV+LAAD R++ G +V KN K+ I+E + +AGAG
Sbjct: 21 LAECSKSFKKTGTTIMGLTFKGGVILAADTRSTGGPVVMNKNKKKLVCINEQMYMAGAGT 80
Query: 59 VGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFDEK 117
D + R+ + +L+ ++G++ V++ L+++ L R + Y+ A+ ++ G D K
Sbjct: 81 AADTAAVGRMAASSLRLHAYKTGRKPLVQSAVKLISDHL--FRYMGYVSAYVIIAGVDYK 138
Query: 118 -PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRD 176
L S+D G IT +V GSG A S+L+ ++ D++ + ++ A +A+ + + D
Sbjct: 139 GAHLCSIDAHGSITAQPFVTDGSGRLAAQSMLEKHWKPDMEENDAVECACKAVEAGVFND 198
Query: 177 VFSGDGIMVVTITEEGYRELSN 198
+ SG G+ +V + +G EL +
Sbjct: 199 LGSGSGVDLVILRLDGTSELKH 220
>pir||I51536 XeLMPa.aa - African clawed frog >gi|971307|dbj|BAA07945.1| (D44540)
low molecular mass protein-7 (LMP-7) homolog [Xenopus
laevis]
Length = 271
Score = 100 bits (247), Expect = 1e-20
Identities = 64/203 (31%), Positives = 102/203 (49%), Gaps = 1/203 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E + GTTT+ GV++A D RAS G+ + K+ +I+ +L +G D
Sbjct: 62 EPWHGTTTLAFKFQHGVIVAVDSRASAGSYISTIKFNKVIEINPYLLGTMSGSAADCQYW 121
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LY ++ R+SV A + L+ NM+ R ++ G+D+K P LY VD
Sbjct: 122 ERLLAKECRLYQLRNNSRISVSAASKLMCNMMLQYRGTGLSVGSMICGWDKKGPGLYYVD 181
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+DS YR DL E + AI+ A RD +SG +
Sbjct: 182 DNGTRLCGDIFSTGSGNSYAYGVMDSGYRFDLTPEEAYDLGRRAISYATHRDAYSGGCVN 241
Query: 185 VVTITEEGYRELSNSRLKAILRQ 207
+ + E+G+ ++ + +L +
Sbjct: 242 LYHMKEDGWVKIGQFDVSDLLHK 264
>pir||I51537 XeLMPb.aa - African clawed frog >gi|971309|dbj|BAA07954.1| (D44549)
low molecular mass protein-7 (LMP-7) homolog [Xenopus
laevis]
Length = 271
Score = 100 bits (247), Expect = 1e-20
Identities = 64/201 (31%), Positives = 103/201 (50%), Gaps = 1/201 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E + GTTT+ GV++A D RAS G+ + + K+ +I+ +L +G D +
Sbjct: 62 EPWHGTTTLAFKFKHGVIVAVDSRASAGSYIASLKANKVIEINPYLLGTMSGSAADCQHW 121
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL E +LY ++ R+SV + + LL NM+ R ++ G+D+K P LY VD
Sbjct: 122 ERLLAKECRLYQLRNNSRISVSSASKLLCNMMLQYRGSGLSVGSMICGWDKKGPGLYYVD 181
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + GSG +AY V+DS YR DL E + AI+ A RD +SG +
Sbjct: 182 DNGTRLCGDIFSTGSGNSYAYGVMDSGYRFDLTPEEAYDLGRHAISYATHRDNYSGGVVN 241
Query: 185 VVTITEEGYRELSNSRLKAIL 205
+ + E+G+ ++ + +L
Sbjct: 242 MYHMKEDGWVKVGEFDVSELL 262
>sp|Q09841|PRCF_SCHPO PUTATIVE PROTEASOME COMPONENT PUP1 PRECURSOR (MACROPAIN SUBUNIT)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT)
>gi|2130339|pir||S62498 probable proteasome component
precursor - fission yeast (Schizosaccharomyces pombe)
>gi|1039345|emb|CAA91242.1| (Z64354) putative proteasome
component precursor [Schizosaccharomyces pombe]
Length = 267
Score = 100 bits (247), Expect = 1e-20
Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 4/184 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VG++ D +VL AD RA+ G I+ KN K+H I ++ AGAG D + ++
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMI 94
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFDEK-PRLYSVDMMG 127
+ +L+ + ++ V T+L L R ++ A+ ++GG+D K P L+++ G
Sbjct: 95 SSNIELHSLYTNRKPRVVTALTMLKQHL--FRYQGHIGAYLVLGGYDCKGPHLFTIAAHG 152
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ YVA GSG A SVL+++Y+ DL+ E +++ EAI + I D+ SG +V
Sbjct: 153 SSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVV 212
Query: 188 ITEE 191
I EE
Sbjct: 213 IDEE 216
>dbj|BAA19146.1| (AB000540) proteasome component PUP1 precursor [Schizosaccharomyces
pombe]
Length = 258
Score = 100 bits (247), Expect = 1e-20
Identities = 63/184 (34%), Positives = 102/184 (55%), Gaps = 4/184 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VG++ D +VL AD RA+ G I+ KN K+H I ++ AGAG D + ++
Sbjct: 26 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMI 85
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFDEK-PRLYSVDMMG 127
+ +L+ + ++ V T+L L R ++ A+ ++GG+D K P L+++ G
Sbjct: 86 SSNIELHSLYTNRKPRVVTALTMLKQHL--FRYQGHIGAYLVLGGYDCKGPHLFTIAAHG 143
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ YVA GSG A SVL+++Y+ DL+ E +++ EAI + I D+ SG +V
Sbjct: 144 SSDKLPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVV 203
Query: 188 ITEE 191
I EE
Sbjct: 204 IDEE 207
>gb|AAD53518.1|AF155578_1 (AF155578) proteasome subunit beta 5 [Danio rerio]
Length = 255
Score = 100 bits (247), Expect = 1e-20
Identities = 64/193 (33%), Positives = 100/193 (51%), Gaps = 1/193 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++A D RA+ G + ++ V K+ +I+ +L AG D
Sbjct: 47 EFLHGTTTLAFKFQHGVIVAVDSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 106
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL + ++Y ++ +R+SV A + LLANM+ + + +V G+D++ P LY VD
Sbjct: 107 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMVCGWDKRGPGLYYVD 166
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G A GSG +AY V+DS R DL + E + AI A RD +SG +
Sbjct: 167 SEGNRVCGDLFAVGSGSMYAYGVVDSGLRYDLTIDEACDLGRRAIYQATYRDAYSGGQVN 226
Query: 185 VVTITEEGYRELS 197
+ + EG+ +S
Sbjct: 227 LYRVHSEGWERVS 239
>gb|AAF14267.1|AF142435_3 (AF142435) 20S proteasome beta-subunit precursor [Frankia sp.
ACN14a/ts-r]
Length = 274
Score = 100 bits (246), Expect = 2e-20
Identities = 70/216 (32%), Positives = 113/216 (51%), Gaps = 14/216 (6%)
Query: 4 LTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDIL 63
+TE GTT V + GV++A DRRA+ G+++ ++V K+H D+ + AG G
Sbjct: 46 VTEVAHGTTIVAVTFPGGVIMAGDRRATQGHMIAQRDVEKVHHADDFSCVGYAGTAGVGA 105
Query: 64 NLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNG--ARMLPYLAWF-LVGGFD---EK 117
L+RL + E + Y G +S+ A A LA M+ G L LA L G+D +K
Sbjct: 106 ELIRLFQVELEHYEKIEGATLSLDAKANRLAAMVKGNLPMALQGLAVVPLFAGYDPDLDK 165
Query: 118 PRLYSVDMMGGITEDK-YVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRD 176
R++S D+ +E++ Y + GSG FA L +R DL + ++IAVEA+ A D
Sbjct: 166 GRIFSYDIAAAKSEERTYESIGSGSVFAKGSLKKRFRVDLTQDDAVRIAVEALYDAADDD 225
Query: 177 VFSG--DGI-----MVVTITEEGYRELSNSRLKAIL 205
+G D I +V ++T +GYR + ++ ++
Sbjct: 226 SATGGPDTIRKLYPIVASVTSDGYRRYGDDEVEPVV 261
>dbj|BAA10931.1| (D64054) LMPX of hagfish [Myxine glutinosa]
Length = 273
Score = 99.8 bits (245), Expect = 2e-20
Identities = 61/191 (31%), Positives = 102/191 (52%), Gaps = 1/191 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++A D RA+ G+ V ++ V K+ +I+ +L AG D + R+L
Sbjct: 70 GTTTLAFKFDHGVIVAVDSRATAGSYVASQTVKKVIEINPYLLGTMAGGAADCMYWERVL 129
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
++Y ++ +R+SV A + LLANM+ + + ++ G+D++ P LY VD G
Sbjct: 130 SKHCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDEEGT 189
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
A GSG +AY VLDS +R D+ E + AI A RD +SG + + +
Sbjct: 190 RLSGGMFAVGSGSTYAYGVLDSNHRPDMTPEEAYDLGRRAICHATHRDAYSGGVVNLYHM 249
Query: 189 TEEGYRELSNS 199
+ G+ ++S +
Sbjct: 250 QQSGWIKVSQN 260
>pir||T48678 proteasome alpha-1 chain [validated] - Haloferax volcanii
>gi|5833206|gb|AAD53404.1|AF126260_1 (AF126260) alpha-1
subunit of 20S proteasome [Haloferax volcanii]
Length = 252
Score = 99.8 bits (245), Expect = 2e-20
Identities = 69/206 (33%), Positives = 112/206 (53%), Gaps = 13/206 (6%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+GT ++G+ +GVVLAAD+R S ++ +V KIHK D+H+ IA AG V D L+
Sbjct: 35 RGTASIGVRTPEGVVLAADKR-SRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDF 93
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLAN------MLNGARMLPYLAWFLVGGFDE-KPRLY 121
R ++++ + G+ + ++ L + + + GAR P+ L+GG + PRLY
Sbjct: 94 ARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGAR--PFGVALLIGGVENGTPRLY 151
Query: 122 SVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGD 181
D G E K V+ G+ L+ +R+DL + EGI++A+EAI S + D
Sbjct: 152 ETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDEGT-APD 210
Query: 182 GIMVVTITEEGYR--ELSNSRLKAIL 205
G+ V T++ E R ELSN +++ L
Sbjct: 211 GVDVATVSAETERFVELSNDEIESYL 236
>pir||JC5073 proteasome epsilon chain precursor - Geodia cydonium
>gi|1708783|emb|CAA66312.1| (X97728) LMP7-like protein
[Geodia cydonium]
Length = 280
Score = 99.1 bits (243), Expect = 3e-20
Identities = 62/196 (31%), Positives = 103/196 (51%), Gaps = 1/196 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ GV++A D RA+ G+ + ++ V K+ +I+ +L AG D R L
Sbjct: 74 GTTTLAFKFQHGVIVAVDSRATAGSWIASQTVKKVIEINPYLLGTMAGGAADCAYWERQL 133
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128
++Y ++ +R+SV A + +L+NM+ + + ++ G+D+K P LY VD G
Sbjct: 134 AFSCRVYELRNKERISVAAASKILSNMVYRYKGMGLSMGTMICGWDKKGPGLYYVDSDGS 193
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ GSG +AY VLDS Y DL V E + AI A RD +SG + + +
Sbjct: 194 RLTHHMFSVGSGSTYAYGVLDSGYSYDLSVEEARDLGKRAIYHATHRDAYSGGVVNLYHM 253
Query: 189 TEEGYRELSNSRLKAI 204
E G+ ++S + +K +
Sbjct: 254 METGWVKVSQTDVKEL 269
>gb|AAF46088.1| (AE003435) CG18341 gene product [Drosophila melanogaster]
Length = 307
Score = 98.7 bits (242), Expect = 5e-20
Identities = 64/185 (34%), Positives = 99/185 (52%), Gaps = 4/185 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GT+ VGI+ DGV+L AD RA+ G IV KN +KIH + +H+ GAG D +
Sbjct: 48 GTSIVGIIYKDGVILGADTRATEGPIVSDKNCSKIHHLQDHIYCCGAGTAADTEMITLTT 107
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFDEK-PRLYSVDMMG 127
AE L+ + +R+ V + +L L R ++ A ++GG D P+LY + G
Sbjct: 108 SAELDLHRLNTERRVPVVCASMMLRRTL--FRYQGHIGAALVMGGVDTTGPQLYCIYPCG 165
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ Y A GSG A SVL+ ++ DL + +G ++ EAI++ + D+ SG I +
Sbjct: 166 SNDKIPYAAMGSGTLAAMSVLEHGWKPDLDLEQGKQLVREAISAGVFNDLGSGSNIDLCV 225
Query: 188 ITEEG 192
IT +G
Sbjct: 226 ITAKG 230
>dbj|BAA28276.1| (AB014058) beta 6 subunit of 20S proteasome [Oryza sativa]
Length = 221
Score = 98.3 bits (241), Expect = 6e-20
Identities = 63/198 (31%), Positives = 101/198 (50%), Gaps = 15/198 (7%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G T V I +D V+AAD R S+G + ++ +KI ++ + A+A +G GDI L + L
Sbjct: 13 GGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNL 72
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMG 127
A LY Q KRMS A+A LL+N L R PY A+ ++GG D + + +++ D +G
Sbjct: 73 AARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVG 132
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYRE-------------DLKVREGIKIAVEAINSAIK 174
Y A G+G VLD++ + L E + + + SA +
Sbjct: 133 SYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASATE 192
Query: 175 RDVFSGDGIMVVTITEEG 192
RD+++GD + +V I + G
Sbjct: 193 RDIYTGDKLEIVVINKAG 210
>pir||T47893 proteasome component C5 - Arabidopsis thaliana
>gi|577531|emb|CAA56201.1| (X79806) proteasome subunit
[Arabidopsis thaliana] >gi|3421120|gb|AAC32073.1|
(AF043537) 20S proteasome beta subunit PBF1 [Arabidopsis
thaliana] >gi|7329692|emb|CAB82686.1| (AL162295)
proteasome component C5 [Arabidopsis thaliana]
Length = 223
Score = 97.5 bits (239), Expect = 1e-19
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 15/200 (7%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G T V I SD V+AAD R S G + +++ +KIHK+ + ++ +G D+ L ++L
Sbjct: 15 GGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVL 74
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMG 127
++ +Y Q K+MS A+A LL+N L R PY A+ ++GG DE+ + +++ D +G
Sbjct: 75 KSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVG 134
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYRE-------------DLKVREGIKIAVEAINSAIK 174
Y A GSG LD++ + L E + + SA +
Sbjct: 135 SYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATE 194
Query: 175 RDVFSGDGIMVVTITEEGYR 194
RD+++GD + ++ + +G +
Sbjct: 195 RDIYTGDKLEIMILKADGIK 214
>sp|P42742|PRC5_ARATH PROTEASOME COMPONENT C5 (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
SUBUNIT C5) (TAS-F22/FAFP98) >gi|600387|emb|CAA47753.1|
(X67338) proteosome subunit [Arabidopsis thaliana]
Length = 230
Score = 97.5 bits (239), Expect = 1e-19
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 15/200 (7%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G T V I SD V+AAD R S G + +++ +KIHK+ + ++ +G D+ L ++L
Sbjct: 22 GGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVL 81
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMG 127
++ +Y Q K+MS A+A LL+N L R PY A+ ++GG DE+ + +++ D +G
Sbjct: 82 KSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVG 141
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYRE-------------DLKVREGIKIAVEAINSAIK 174
Y A GSG LD++ + L E + + SA +
Sbjct: 142 SYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASATE 201
Query: 175 RDVFSGDGIMVVTITEEGYR 194
RD+++GD + ++ + +G +
Sbjct: 202 RDIYTGDKLEIMILKADGIK 221
>gb|AAB82570.1| (AF025791) 20S proteasome beta2 subunit [Drosophila melanogaster]
Length = 272
Score = 97.1 bits (238), Expect = 1e-19
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 4/194 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VGI+ DGV+L AD RA+ G IV KN KIH + +++ GAG D L+
Sbjct: 39 GTTIVGIIYKDGVILGADTRATEGPIVSDKNCAKIHYLAKNIYCCGAGTAADTEMTTDLI 98
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLV-GGFDEK-PRLYSVDMMG 127
++ +L+ Q+ + + V A T+L ML R +++ LV GG D+ P +YS+ G
Sbjct: 99 SSQLELHRLQTDREVRVVAANTMLKQML--FRYQGHISAALVLGGVDKTGPHIYSIHPHG 156
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ Y GSG A +V +S ++ DL EG K+ +A + + D+ SG I +
Sbjct: 157 SSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEGKKLVRDADPTGVFNDLGSGSNIDLCV 216
Query: 188 ITEEGYRELSNSRL 201
I + L N L
Sbjct: 217 IRKGSVEYLRNYEL 230
>gb|AAB82571.1| (AF025792) 20S proteasome beta2 subunit [Drosophila melanogaster]
Length = 272
Score = 97.1 bits (238), Expect = 1e-19
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 4/194 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VGI+ DGV+L AD RA+ G IV KN KIH + +++ GAG D L+
Sbjct: 39 GTTIVGIIYKDGVILGADTRATEGPIVSDKNCAKIHYLAKNIYCCGAGTAADTEMTTDLI 98
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLV-GGFDEK-PRLYSVDMMG 127
++ +L+ Q+ + + V A T+L ML R +++ LV GG D+ P +YS+ G
Sbjct: 99 SSQLELHRLQTDREVRVVAANTMLKQML--FRYQGHISAALVLGGVDKTGPHIYSIHPHG 156
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ Y GSG A +V +S ++ DL EG K+ +A + + D+ SG I +
Sbjct: 157 SSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEGKKLVRDADPTGVFNDLGSGSNIDLCV 216
Query: 188 ITEEGYRELSNSRL 201
I + L N L
Sbjct: 217 IRKGSVEYLRNYEL 230
>gb|AAC64284.1|AAC64284 (AF086832) 20S proteasome beta-subunit precursor [Streptomyces
coelicolor A3(2)] >gi|6119686|emb|CAB59497.1| (AL132648)
20S proteasome beta-subunit precursor [Streptomyces
coelicolor A3(2)]
Length = 281
Score = 97.1 bits (238), Expect = 1e-19
Identities = 67/220 (30%), Positives = 113/220 (50%), Gaps = 22/220 (10%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT V + GVVLA DRRA++GN++ +++ K+ DE+ A+ AG G + +V+L
Sbjct: 53 GTTIVAVTFPGGVVLAGDRRATMGNMIAQRDIEKVFPADEYSAVGIAGTAGLAVEMVKLF 112
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLN---GARMLPYLAWFLVGGFD---EKPRLYSV 123
+ E + + G ++S++ A L+ M+ G M L G+D + R++S
Sbjct: 113 QLELEHFEKVEGAQLSLEGKANRLSTMIRSNLGMAMQGLAVVPLFAGYDVDRGRGRIFSY 172
Query: 124 DMMGGITEDKYVA-AGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG 182
D+ GG +E+++ A GSG FA + +R+DL + + V+A+ A D +G
Sbjct: 173 DVTGGRSEERHFATTGSGSVFARGAMKKLFRDDLTEEQATTLVVQALYDAADDDSATGGP 232
Query: 183 -------IMVVTITEEGYR--------ELSNSRLKAILRQ 207
++ ITE+G+R EL+ S L+A L Q
Sbjct: 233 DVARRIYPIITVITEDGFRRLGEDEAAELAGSVLQARLEQ 272
>dbj|BAA96835.1| (AB026564) beta 2 subunit of 20S proteasome [Oryza sativa]
Length = 272
Score = 96.7 bits (237), Expect = 2e-19
Identities = 67/192 (34%), Positives = 95/192 (48%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VG+V DGVVL AD RA+ G IV KN KIH + ++ GAG D + ++
Sbjct: 38 GTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 97
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGI 129
++ +L+ +G+ V TLL + L + A L G P L++V G
Sbjct: 98 SSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGST 157
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTIT 189
+ GSG A SV +S+Y+E L EGI++ EAI I D+ SG + V IT
Sbjct: 158 DTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVCVIT 217
Query: 190 EEGYRELSNSRL 201
+ L N +L
Sbjct: 218 KGKTEYLRNHQL 229
>gb|AAC32067.1| (AF043531) 20S proteasome beta subunit PBB2 [Arabidopsis thaliana]
>gi|9758084|dbj|BAB08528.1| (AB009052) 20S proteasome
beta subunit PBB2 [Arabidopsis thaliana]
Length = 274
Score = 96.3 bits (236), Expect = 2e-19
Identities = 64/186 (34%), Positives = 96/186 (51%), Gaps = 1/186 (0%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VG++ DGV+L AD RA+ G IV KN KIH + ++ GAG D + ++
Sbjct: 39 GTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 98
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGI 129
++ +L+ Q+G+ V TLL L + A L G P L+++ G
Sbjct: 99 SSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGST 158
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTIT 189
+ GSG A SV +++Y+E L EGIK+ EAI S I D+ SG + + IT
Sbjct: 159 DTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICVIT 218
Query: 190 EEGYRE 195
+G++E
Sbjct: 219 -KGHKE 223
>gi|6325360 proteasome subunit; Pre2p [Saccharomyces cerevisiae]
>gi|730375|sp|P30656|PRCE_YEAST PROTEASOME COMPONENT
PRE2 PRECURSOR (MACROPAIN SUBUNIT PRE2) (PROTEINASE YSCE
SUBUNIT PRE2) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
SUBUNIT PRE2) >gi|422174|pir||A45411 multicatalytic
endopeptidase complex (EC 3.4.99.46) chain PRE2
precursor - yeast (Saccharomyces cerevisiae)
>gi|4221|emb|CAA48628.1| (X68662) proteasome Pre2
subunit [Saccharomyces cerevisiae]
>gi|914974|gb|AAB68073.1| (U32445) Proteasome component
Pre2 (Swiss Prot. accession number P30656)
[Saccharomyces cerevisiae] >gi|1041975|gb|AAB34630.1|
Doa3, PRG1, PRE2=beta-type proteasome subunit LMP7
homolog/Hs-X homolog [Saccharomyces cerevisiae, Peptide,
287 aa] >gi|742352|prf||2009376C proteasome:SUBUNIT=Pre2
[Saccharomyces cerevisiae]
Length = 287
Score = 95.6 bits (234), Expect = 4e-19
Identities = 57/186 (30%), Positives = 97/186 (51%), Gaps = 2/186 (1%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ G+++A D RA+ GN V ++ V K+ +I+ L AG D L
Sbjct: 75 GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWL 134
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK--PRLYSVDMMG 127
++ +L+ + +R+SV A + +L+N++ + ++ G+ K P +Y VD G
Sbjct: 135 GSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDG 194
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ GSG FAY VLDS Y+ DL V + + + +I +A RD +SG + +
Sbjct: 195 TRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 254
Query: 188 ITEEGY 193
+TE+G+
Sbjct: 255 VTEDGW 260
>gb|AAA34906.1| (M96667) proteosome-related protein [Saccharomyces cerevisiae]
Length = 288
Score = 95.6 bits (234), Expect = 4e-19
Identities = 57/186 (30%), Positives = 97/186 (51%), Gaps = 2/186 (1%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ G+++A D RA+ GN V ++ V K+ +I+ L AG D L
Sbjct: 75 GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWL 134
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK--PRLYSVDMMG 127
++ +L+ + +R+SV A + +L+N++ + ++ G+ K P +Y VD G
Sbjct: 135 GSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDG 194
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ GSG FAY VLDS Y+ DL V + + + +I +A RD +SG + +
Sbjct: 195 TRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYH 254
Query: 188 ITEEGY 193
+TE+G+
Sbjct: 255 VTEDGW 260
>gi|11498101 proteasome, subunit alpha (psmA) [Archaeoglobus fulgidus]
>gi|6093781|sp|O29760|PRCA_ARCFU PROTEASOME ALPHA
SUBUNIT (MULTICATALYTIC ENDOPEPTIDASE COMPLEX ALPHA
SUBUNIT) >gi|7435882|pir||B69311 proteasome, subunit
alpha (psmA) homolog - Archaeoglobus fulgidus
>gi|2650136|gb|AAB90747.1| (AE001070) proteasome,
subunit alpha (psmA) [Archaeoglobus fulgidus]
Length = 246
Score = 95.6 bits (234), Expect = 4e-19
Identities = 60/201 (29%), Positives = 101/201 (49%), Gaps = 10/201 (4%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+G T +GI C +GV+L AD+R ++ A + KI+KIDEH+ A +G V D L+
Sbjct: 33 RGATAIGIKCKEGVILIADKRVG-SKLLEADTIEKIYKIDEHICAATSGLVADARVLIDR 91
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANM------LNGARMLPYLAWFLVGGFDEKPRLYS 122
R EA++ + ++VK LA + + G R P+ L+ G DE P+LY
Sbjct: 92 ARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVR--PFGVSLLIAGVDEVPKLYE 149
Query: 123 VDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGD- 181
D G + E K A G G + EYR+DL + + + + A+ +I+ ++ +
Sbjct: 150 TDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENI 209
Query: 182 GIMVVTITEEGYRELSNSRLK 202
+ V + + ++E+S LK
Sbjct: 210 EVGYVKVDDRTFKEVSPEELK 230
>emb|CAA73621.1| (Y13178) multicatalytic endopeptidase [Arabidopsis thaliana]
Length = 273
Score = 94.8 bits (232), Expect = 7e-19
Identities = 63/189 (33%), Positives = 94/189 (49%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VG++ DGV+L AD RA+ G IV KN KIH + ++ GAG D + ++
Sbjct: 39 GTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 98
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGI 129
++ +L+ Q+G+ V TLL L + A L G P L+++ G
Sbjct: 99 SSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGST 158
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTIT 189
+ GSG A SV +++Y+E L EGIK+ E+I S I D+ SG + + IT
Sbjct: 159 DTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVIT 218
Query: 190 EEGYRELSN 198
+ L N
Sbjct: 219 KGNKEYLRN 227
>gb|AAC32066.1| (AF043530) 20S proteasome beta subunit PBB1 [Arabidopsis thaliana]
>gi|7939516|dbj|BAA95719.1| (AB024028) 20S proteasome
beta subunit / multicatalytic endopeptidase [Arabidopsis
thaliana]
Length = 273
Score = 94.8 bits (232), Expect = 7e-19
Identities = 63/189 (33%), Positives = 94/189 (49%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VG++ DGV+L AD RA+ G IV KN KIH + ++ GAG D + ++
Sbjct: 39 GTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMV 98
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDMMGGI 129
++ +L+ Q+G+ V TLL L + A L G P L+++ G
Sbjct: 99 SSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGHVSAALVLGGVDITGPHLHTIYPHGST 158
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTIT 189
+ GSG A SV +++Y+E L EGIK+ E+I S I D+ SG + + IT
Sbjct: 159 DTLPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVIT 218
Query: 190 EEGYRELSN 198
+ L N
Sbjct: 219 KGNKEYLRN 227
>sp|Q59565|PRCA_METTE PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
ALPHA SUBUNIT) >gi|11265947|pir||T48878 proteasome psmA,
alpha chain [validated] - Methanosarcina thermophila
>gi|1002689|gb|AAA93166.1| (U30483) PsmA [Methanosarcina
thermophila]
Length = 247
Score = 94.4 bits (231), Expect = 9e-19
Identities = 61/207 (29%), Positives = 109/207 (52%), Gaps = 11/207 (5%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+GTT VGI +DGVVL D+R + +V A+++ KI +ID+H+ A +G V D LV
Sbjct: 32 RGTTAVGIKAADGVVLLVDKRIT-SRLVEAESIEKIFQIDDHIGAATSGLVADARALVDR 90
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLAN------MLNGARMLPYLAWFLVGGFDEK-PRLY 121
R EA++ + + V+ ++ + + G R PY L+ G D+K PRL+
Sbjct: 91 ARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVR--PYGTALLIAGVDDKRPRLF 148
Query: 122 SVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGD 181
D G + E K A G+G V +++Y+ED+ + I + ++A+ A + +G
Sbjct: 149 ETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEGKFDAGT 208
Query: 182 -GIMVVTITEEGYRELSNSRLKAILRQ 207
+ VV++ ++ +R+L + ++Q
Sbjct: 209 LEVGVVSLQDKKFRKLEPEEVGNYVQQ 235
>gb|AAD53521.1|AF155581_1 (AF155581) proteasome subunit beta 7 [Danio rerio]
Length = 275
Score = 94.4 bits (231), Expect = 9e-19
Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 4/183 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT GIV DGVVL AD RA+ G IV KN +KIH I ++ GAG D +++
Sbjct: 41 GTTICGIVYKDGVVLGADTRATEGMIVADKNCSKIHYISPNIYCCGAGTAADTEMTTQII 100
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFD-EKPRLYSVDMMG 127
+ +L+ +G+ V +L ML R Y+ A ++GG D P LYS+ G
Sbjct: 101 SSNLELHSLSTGRLPRVATANRMLKQML--FRYQGYIGAALVLGGVDCTGPHLYSIYPHG 158
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ YV GSG A +V + YR D++ + + +AI + I D+ SG I V
Sbjct: 159 STDKLPYVTMGSGSLAAMAVFEDRYRPDMEEEDAKSLVRDAIAAGIFNDLGSGSNIDVCV 218
Query: 188 ITE 190
IT+
Sbjct: 219 ITK 221
>gb|AAC45736.1| (U26422) proteasome beta-type subunit 2 [Rhodococcus erythropolis]
Length = 292
Score = 94.0 bits (230), Expect = 1e-18
Identities = 71/217 (32%), Positives = 108/217 (49%), Gaps = 19/217 (8%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT V I + GV+LA DRRA++GN++ +++V K++ D++ A AG G + LVRL
Sbjct: 59 GTTIVAISYAGGVLLAGDRRATMGNLIASRDVQKVYVTDDYSAAGIAGTAGIAIELVRLF 118
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANM--------LNGARMLPYLAWFLVGGFD--EKPR 119
E + Y G ++ A L++M + G ++P L + + D R
Sbjct: 119 AVELEHYEKIEGVPLTFDGKANRLSSMVRGNLGAAMQGLAVVPLLVGYDLDAVDPSRAGR 178
Query: 120 LYSVDMMGGITEDK--YVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
+ S D++GG E++ Y A GSG FA S L Y + ++ AVEA+ A D
Sbjct: 179 IVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKLYSPGIDEDTALRFAVEALYDAADDDS 238
Query: 178 FSGD-----GI--MVVTITEEGYRELSNSRLKAILRQ 207
+G GI VTIT G ELS ++ I R+
Sbjct: 239 ATGGPDLTRGIYPTAVTITSAGAVELSTAKAAEIARE 275
>gi|6755206 proteasome (prosome, macropain) subunit, beta type 7 [Mus musculus]
>gi|7435873|pir||JC6122 proteasome beta-type Z chain (EC
3.4.-.-) - mouse >gi|1632755|dbj|BAA12017.1| (D83585)
proteasome Z subunit precursor [Mus musculus]
>gi|2062107|emb|CAA71824.1| (Y10874) proteasome subunti
MC14 [Mus musculus] >gi|2547068|dbj|BAA22857.1| (D85570)
PSMB7 [Mus musculus]
Length = 277
Score = 93.6 bits (229), Expect = 2e-18
Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 4/183 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT G+V DG+VL AD RA+ G +V KN +KIH I ++ GAG D +L+
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFD-EKPRLYSVDMMG 127
+ +L+ +G+ V +L ML R Y+ A ++GG D P LYS+ G
Sbjct: 103 SSNLELHSLTTGRLPRVVTANRMLKQML--FRYQGYIGAALVLGGVDVTGPHLYSIYPHG 160
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ YV GSG A +V + ++R D++ E K+ EAI + I D+ SG I +
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 188 ITE 190
I++
Sbjct: 221 ISK 223
>gb|AAF97811.1|AF285103_1 (AF285103) proteasome z subunit [Rattus norvegicus]
Length = 277
Score = 93.6 bits (229), Expect = 2e-18
Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 4/183 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT G+V DG+VL AD RA+ G +V KN +KIH I ++ GAG D +L+
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFD-EKPRLYSVDMMG 127
+ +L+ +G+ V +L ML R Y+ A ++GG D P LYS+ G
Sbjct: 103 SSNLELHSLTTGRLPRVVTANRMLKQML--FRYQGYIGAALVLGGVDVTGPHLYSIYPHG 160
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ YV GSG A +V + ++R D++ E K+ EAI + I D+ SG I +
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 188 ITE 190
I++
Sbjct: 221 ISK 223
>pir||T48679 proteasome alpha-2 chain [validated] - Haloferax volcanii
>gi|5833208|gb|AAD53405.1|AF126261_1 (AF126261) alpha-2
subunit of 20S proteasome [Haloferax volcanii]
Length = 249
Score = 93.2 bits (228), Expect = 2e-18
Identities = 61/190 (32%), Positives = 102/190 (53%), Gaps = 8/190 (4%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+G +G+ +DGVVLAA R++ ++ A+++ K+HK+D+ L A AG V D LV
Sbjct: 34 RGAPVLGVRTADGVVLAA-LRSTPSELMEAESIEKLHKLDDALGAATAGHVADARKLVDF 92
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARM----LPYLAWFLVGGFDE-KPRLYSV 123
R A+ + + G+ + V+ L + + + + PY A L+GG + RL++
Sbjct: 93 ARTTAQREHLRYGEPIGVETLTKTITDNIQESTQSGGTRPYGASLLIGGVENGSGRLFAT 152
Query: 124 DMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGI 183
D G E K VA G E + L+ Y EDL + +G+ +AVEA+ +A + D +
Sbjct: 153 DPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEALVAA--DEEIESDEL 210
Query: 184 MVVTITEEGY 193
+VT++E GY
Sbjct: 211 NLVTVSEAGY 220
>pdb|1G0U|K Chain K, A Gated Channel Into The Proteasome Core Particle
>gi|11514016|pdb|1G0U|Y Chain Y, A Gated Channel Into
The Proteasome Core Particle
Length = 212
Score = 93.2 bits (228), Expect = 2e-18
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 2/185 (1%)
Query: 11 TTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLR 70
TTT+ G+++A D RA+ GN V ++ V K+ +I+ L AG D L
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 71 AEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK--PRLYSVDMMGG 128
++ +L+ + +R+SV A + +L+N++ + ++ G+ K P +Y VD G
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGT 120
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ GSG FAY VLDS Y+ DL V + + + +I +A RD +SG + + +
Sbjct: 121 RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHV 180
Query: 189 TEEGY 193
TE+G+
Sbjct: 181 TEDGW 185
>gi|4506203 proteasome (prosome, macropain) subunit, beta type, 7; Z [Homo
sapiens] >gi|11428779|ref|XP_005463.1| proteasome
(prosome, macropain) subunit, beta type, 7 [Homo
sapiens] >gi|1531533|dbj|BAA07238.1| (D38048) proteasome
subunit z [Homo sapiens]
Length = 277
Score = 92.1 bits (225), Expect = 4e-18
Identities = 62/183 (33%), Positives = 94/183 (50%), Gaps = 4/183 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT G+V DG+VL AD RA+ G +V KN +KIH I ++ GAG D +L+
Sbjct: 43 GTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLI 102
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFD-EKPRLYSVDMMG 127
+ +L+ +G+ V +L ML R Y+ A ++GG D P LYS+ G
Sbjct: 103 SSNLELHSLSTGRLPRVVTANRMLKQML--FRYQGYIGAALVLGGVDVTGPHLYSIYPHG 160
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ YV GSG A +V + ++R D++ E + EAI + I D+ SG I +
Sbjct: 161 STDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCV 220
Query: 188 ITE 190
I++
Sbjct: 221 ISK 223
>pdb|1RYP|L Chain L, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution >gi|3114294|pdb|1RYP|Z Chain Z,
Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
Length = 212
Score = 92.1 bits (225), Expect = 4e-18
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 2/185 (1%)
Query: 11 TTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLR 70
TTT+ G+++A D RA+ GN V ++ V ++ +I+ L AG D L
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 71 AEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK--PRLYSVDMMGG 128
++ +L+ + +R+SV A + +L+N++ + ++ G+ K P +Y VD G
Sbjct: 61 SQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGT 120
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ GSG FAY VLDS Y+ DL V + + + +I +A RD +SG + + +
Sbjct: 121 RLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHV 180
Query: 189 TEEGY 193
TE+G+
Sbjct: 181 TEDGW 185
>gb|AAC45740.1| (U26421) proteasome beta-type subunit 1 [Rhodococcus erythropolis]
Length = 294
Score = 91.3 bits (223), Expect = 8e-18
Identities = 69/217 (31%), Positives = 105/217 (47%), Gaps = 19/217 (8%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT V + GV+LA DRRA+ GN++ +++V K++ DE+ A AG G + LVRL
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLF 124
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANM--------LNGARMLPYLAWFLVGGFDEK--PR 119
E + Y G ++ A LA+M + G ++P L + + DE R
Sbjct: 125 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 184
Query: 120 LYSVDMMGGITEDK--YVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
+ S D++GG E++ Y A GSG FA S L Y D ++ A+E++ A D
Sbjct: 185 IVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDS 244
Query: 178 FSGD-----GI--MVVTITEEGYRELSNSRLKAILRQ 207
+G GI VTIT+ G +S + R+
Sbjct: 245 ATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARR 281
>pir||T38196 probable proteasome component c5 - fission yeast
(Schizosaccharomyces pombe) >gi|5734483|emb|CAB52716.1|
(AL109831) putative proteasome component c5
[Schizosaccharomyces pombe] >gi|6681370|dbj|BAA88692.1|
(AB012135) catalytic subunit (C5) of proteasome
[Schizosaccharomyces pombe]
Length = 225
Score = 91.3 bits (223), Expect = 8e-18
Identities = 59/202 (29%), Positives = 95/202 (46%), Gaps = 19/202 (9%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G TTV I +LA D R+ G + + ++H++ + L I +G D L LV+ +
Sbjct: 13 GGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRI 72
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE--KPRLYSVDMMG 127
+ LY+ ++MS ++ A ++ +L G R PY + V G D+ K +YS D +G
Sbjct: 73 QQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFDPVG 132
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEY-----------------REDLKVREGIKIAVEAIN 170
+ A GS F LD++ R LK+ E +KI +A
Sbjct: 133 SYEREWCRAGGSAANFITPFLDNQVNLHNQYVPGSHGKERKPRRLLKLEEAMKITTDAFT 192
Query: 171 SAIKRDVFSGDGIMVVTITEEG 192
SA +R + GD ++V IT+EG
Sbjct: 193 SAGERHIEVGDSVLVKIITKEG 214
>pdb|1G65|K Chain K, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
>gi|11513437|pdb|1G65|Y Chain Y, Crystal Structure Of
Epoxomicin:20s Proteasome Reveals A Molecular Basis For
Selectivity Of Alpha,Beta-Epoxyketone Proteasome
Inhibitors
Length = 211
Score = 91.3 bits (223), Expect = 8e-18
Identities = 55/184 (29%), Positives = 95/184 (50%), Gaps = 2/184 (1%)
Query: 12 TTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRA 71
TT+ G+++A D RA+ GN V ++ V K+ +I+ L AG D L +
Sbjct: 1 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGS 60
Query: 72 EAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK--PRLYSVDMMGGI 129
+ +L+ + +R+SV A + +L+N++ + ++ G+ K P +Y VD G
Sbjct: 61 QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR 120
Query: 130 TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTIT 189
+ GSG FAY VLDS Y+ DL V + + + +I +A RD +SG + + +T
Sbjct: 121 LKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVT 180
Query: 190 EEGY 193
E+G+
Sbjct: 181 EDGW 184
>gb|AAG18783.1| (AE004983) proteasome, subunit beta; PsmB [Halobacterium sp. NRC-1]
Length = 253
Score = 90.5 bits (221), Expect = 1e-17
Identities = 62/198 (31%), Positives = 101/198 (50%), Gaps = 13/198 (6%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+GT ++G+ +GVVL D++ ++ +V K+HKID+H+ A AG V D LV
Sbjct: 35 RGTASIGVRTPEGVVLVVDKQTR-SPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDF 93
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLAN------MLNGARMLPYLAWFLVGGFDE-KPRLY 121
R ++++ + + + V+ L + + + GAR P+ L+ G + +PRL+
Sbjct: 94 ARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGAR--PFGVALLIAGVEGGEPRLF 151
Query: 122 SVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGD 181
D G E K VA GS L+ EY L V +GI +A+ A+N + D SGD
Sbjct: 152 ETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNEG-REDALSGD 210
Query: 182 GIMVVTITEE--GYRELS 197
G+ V + + YREL+
Sbjct: 211 GVGVGIVDADTGTYRELA 228
>pir||JS0753 multicatalytic endopeptidase complex (EC 3.4.99.46) chain pts1 -
fission yeast (Schizosaccharomyces pombe)
>gi|218552|dbj|BAA02403.1| (D13094) proteasome subunit
pts1+ [Schizosaccharomyces pombe]
>gi|742350|prf||2009376A proteasome:SUBUNIT=pts1
[Schizosaccharomyces pombe]
Length = 215
Score = 87.8 bits (214), Expect = 9e-17
Identities = 61/189 (32%), Positives = 95/189 (49%), Gaps = 9/189 (4%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ G+V+ D RAS G ++ ++ V K+ +I+ +L AG D +L
Sbjct: 4 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 63
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLN-----GARMLPYLAWFLVGGFDEKPRLYSVD 124
E +L+ ++ + +SV A + +L+N+ G M LA GG LY +D
Sbjct: 64 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGG----TALYYID 119
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + + GSG FAY VLDS YR DL +E + +A +I +A RD +SG +
Sbjct: 120 SDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVN 179
Query: 185 VVTITEEGY 193
+ I E G+
Sbjct: 180 LYHIDENGW 188
>gb|AAB87680.1| (AF032391) proteasome subunit X [Danio rerio]
Length = 218
Score = 87.8 bits (214), Expect = 9e-17
Identities = 58/172 (33%), Positives = 88/172 (50%), Gaps = 1/172 (0%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTTT+ GV++A D RA+ G + ++ V K+ +I+ +L AG D
Sbjct: 47 EFLHGTTTLAFKFQHGVIVAVDSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFW 106
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVD 124
RLL + ++Y ++ +R+SV A + LLANM+ + + +V G+D++ P LY VD
Sbjct: 107 ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMVCGWDKRGPGLYYVD 166
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRD 176
G A GSG +AY V+DS R DL + E + I A RD
Sbjct: 167 SEGNRVCGDLFAVGSGSMYAYGVVDSGLRYDLTIDEACDLGRRGIYQATYRD 218
>sp|P30655|PRCE_SCHPO PROTEASOME COMPONENT PTS1 PRECURSOR (MACROPAIN SUBUNIT PTS1)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT PTS1)
>gi|7493190|pir||T38783 proteasome component pts1
precursor - fission yeast (Schizosaccharomyces pombe)
>gi|4490651|emb|CAB11483.1| (Z98762) proteasome
component pts1 precursor [Schizosaccharomyces pombe]
Length = 272
Score = 87.8 bits (214), Expect = 9e-17
Identities = 61/189 (32%), Positives = 95/189 (49%), Gaps = 9/189 (4%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTTT+ G+V+ D RAS G ++ ++ V K+ +I+ +L AG D +L
Sbjct: 61 GTTTLAFRYQHGIVVCVDSRASAGPLIASQTVKKVIEINPYLLGTLAGGAADCQFWETVL 120
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLN-----GARMLPYLAWFLVGGFDEKPRLYSVD 124
E +L+ ++ + +SV A + +L+N+ G M LA GG LY +D
Sbjct: 121 GMECRLHQLRNKELISVSAASKILSNITYSYKGYGLSMGTMLAGTGKGG----TALYYID 176
Query: 125 MMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G + + GSG FAY VLDS YR DL +E + +A +I +A RD +SG +
Sbjct: 177 SDGTRLKGDLFSVGSGSTFAYGVLDSGYRWDLSKQEALYLAQRSIVAATHRDAYSGGSVN 236
Query: 185 VVTITEEGY 193
+ I E G+
Sbjct: 237 LYHIDENGW 245
>gb|AAF72737.1|AF097521_1 (AF097521) proteasome B type subunit [Cryptosporidium parvum]
Length = 210
Score = 87.4 bits (213), Expect = 1e-16
Identities = 54/188 (28%), Positives = 99/188 (51%), Gaps = 3/188 (1%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT V + DG+VLAAD R S G I+ + KI +I + + + +G D + R +
Sbjct: 13 GTTIVALKYKDGLVLAADGRTSTGPIIAFRAARKITQITDKVFMCRSGSAADTQIISRYV 72
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKP--RLYSVDMMG 127
R + + ++G+ VK++A++ A +++ LA ++ G D +++ + + G
Sbjct: 73 RRIVQDHELETGEDTKVKSVASV-ARLISYQNKEHLLADMIIAGMDPNGEFKVFRIPLGG 131
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ E Y +GSG + YS+LDS+Y ++ + E A + ++ A+ RD SG I ++
Sbjct: 132 TLIEGSYAISGSGSGYIYSMLDSKYHSEMDLDECKSFARDLVSHAMFRDSSSGGIIRIIV 191
Query: 188 ITEEGYRE 195
I + G E
Sbjct: 192 INKSGVEE 199
>gb|AAC35983.1| (AF088915) proteasome beta subunit [Petunia x hybrida]
Length = 223
Score = 87.0 bits (212), Expect = 1e-16
Identities = 55/200 (27%), Positives = 96/200 (47%), Gaps = 15/200 (7%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G T V + +D V+AAD R S G + ++ +KI K+ + +A +G D+ L ++L
Sbjct: 15 GGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVL 74
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMG 127
+ +Y Q K+MS A+ LL+N L R PY ++ ++GG D + + +++ D +G
Sbjct: 75 ASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVG 134
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYRE-------------DLKVREGIKIAVEAINSAIK 174
Y + GSG LD++ + L E I + SA +
Sbjct: 135 SYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASATE 194
Query: 175 RDVFSGDGIMVVTITEEGYR 194
RD+++GD + +V + G R
Sbjct: 195 RDIYTGDRLEIVILNASGIR 214
>gi|4506191 proteasome (prosome, macropain) subunit, beta type, 10; Proteosome
subunit MECL1 [Homo sapiens]
>gi|730376|sp|P40306|PRCF_HUMAN PROTEASOME COMPONENT
MECL-1 PRECURSOR (MACROPAIN SUBUNIT MECL-1)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT MECL-1)
>gi|2136008|pir||I38135 multicatalytic endopeptidase
complex (EC 3.4.99.46) beta chain MECL-1 - human
>gi|406227|emb|CAA50709.1| (X71874) proteasome-like
subunit MECL-1 [Homo sapiens]
>gi|2765348|emb|CAA73982.1| (Y13640) proteasome subunit
MECl-1 [Homo sapiens]
Length = 273
Score = 86.6 bits (211), Expect = 2e-16
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 4/189 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT G+V DGV+L AD RA+ ++V K+ KIH I + GAG D R++
Sbjct: 39 GTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMV 98
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYL-AWFLVGGFD-EKPRLYSVDMMG 127
++ +L+ +G+ V + +L L R ++ A +VGG D P+LY V G
Sbjct: 99 ASKMELHALSTGREPRVATVTRILRQTL--FRYQGHVGASLIVGGVDLTGPQLYGVHPHG 156
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ + A GSG + A +VL+ ++ ++ + + VEA+ + I D+ SG +
Sbjct: 157 SYSRLPFTALGSGQDAALAVLEDRFQPNMTLEAAQGLLVEAVTAGILGDLGSGGNVDACV 216
Query: 188 ITEEGYREL 196
IT+ G + L
Sbjct: 217 ITKTGAKLL 225
>gb|AAD53037.1|AF115540_1 (AF115540) low molecular mass protein 2 [Oncorhynchus mykiss]
Length = 217
Score = 85.8 bits (209), Expect = 3e-16
Identities = 54/191 (28%), Positives = 96/191 (49%), Gaps = 6/191 (3%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNI-VYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
GTT + + + GV++ +D RAS+G V +K + K+ ++ + + AG + D + +
Sbjct: 16 GTTILAVTFNGGVIIGSDSRASIGGYYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKA 75
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANML-NGARMLPYLAWFLVGGFDEK--PRLYSVDM 125
+ + + Q VKA A++L + N L A F+ G+D K P++Y+V +
Sbjct: 76 AKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQ--AGFITAGWDRKKGPQVYTVAL 133
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMV 185
G + + GSG + Y D++Y+ D+ E ++ A A+ A+ RD SG +
Sbjct: 134 GGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHL 193
Query: 186 VTITEEGYREL 196
V ITEEG +
Sbjct: 194 VVITEEGVEHI 204
>gb|AAG16286.1|AC016024_9 (AC016024) leishmania proteasome subunit beta-2 [Leishmania major]
Length = 259
Score = 85.8 bits (209), Expect = 3e-16
Identities = 64/190 (33%), Positives = 98/190 (50%), Gaps = 5/190 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT VG+V DGVVL AD RA+ G+IV K KIH + ++ GAG D + ++
Sbjct: 34 GTTIVGVVYKDGVVLGADTRATEGSIVADKCCRKIHYMAPNIMCCGAGTSADTEAVTNMV 93
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLV-GGFD-EKPRLYSVDMMG 127
+ L+ ++GK+ V TLL L R +++ LV GG D E P L ++ G
Sbjct: 94 SSHLALHRLETGKQSRVLEALTLLKRHL--YRYQGHVSAALVLGGVDVEGPFLATIAPHG 151
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+V GSG A + L++ Y++++ E ++ AI+ I D +SG + V
Sbjct: 152 STDRLPFVTMGSGSIAAMAQLEAAYKDNMTCEEAKELVTSAIHKGIFNDPYSGTQVDVCV 211
Query: 188 ITEEGYRELS 197
IT +G EL+
Sbjct: 212 IT-KGKTELT 220
>gi|6320849 22.6 kDa proteasome subunit; Pre1p [Saccharomyces cerevisiae]
>gi|730378|sp|P22141|PRCG_YEAST PROTEASOME COMPONENT C11
(MACROPAIN SUBUNIT C11) (PROTEINASE YSCE SUBUNIT 11)
(MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT C11)
>gi|1078136|pir||S50470 multicatalytic endopeptidase
complex (EC 3.4.99.46) chain PRE1 - yeast (Saccharomyces
cerevisiae) >gi|11513422|pdb|1G65|J Chain J, Crystal
Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
>gi|11513436|pdb|1G65|X Chain X, Crystal Structure Of
Epoxomicin:20s Proteasome Reveals A Molecular Basis For
Selectivity Of Alpha,Beta-Epoxyketone Proteasome
Inhibitors >gi|11514001|pdb|1G0U|J Chain J, A Gated
Channel Into The Proteasome Core Particle
>gi|11514015|pdb|1G0U|X Chain X, A Gated Channel Into
The Proteasome Core Particle >gi|3114279|pdb|1RYP|K
Chain K, Crystal Structure Of The 20s Proteasome From
Yeast At 2.4 Angstroms Resolution >gi|3114293|pdb|1RYP|Y
Chain Y, Crystal Structure Of The 20s Proteasome From
Yeast At 2.4 Angstroms Resolution
>gi|311329|emb|CAA40149.1| (X56812) proteinase yscE
subunit 11 [Saccharomyces cerevisiae]
>gi|603604|gb|AAB64545.1| (U18778) Pre1p: 22.6 kDa
subunit of proteinase yscE [Saccharomyces cerevisiae]
Length = 198
Score = 85.4 bits (208), Expect = 4e-16
Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 9/192 (4%)
Query: 14 VGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEA 73
+GI D V+LA+ + + G V + K ++ H ++ AG+ GD + ++A
Sbjct: 5 LGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANI 64
Query: 74 KLYYAQSGKRMSVKALATL----LANMLNGARMLPYLAWFLVGGFDEK---PRLYSVDMM 126
+LY + +S +A+++ LA + R PY L+GG+D+K P LY +D +
Sbjct: 65 QLYSIREDYELSPQAVSSFVRQELAKSIRSRR--PYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 127 GGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVV 186
G E Y A G + +S+LD YR D+ EG+ + + KR G++V
Sbjct: 123 GTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVK 182
Query: 187 TITEEGYRELSN 198
+ ++G R++ +
Sbjct: 183 IVDKDGIRQVDD 194
>sp|O26782|PRCA_METTH PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
ALPHA SUBUNIT) >gi|7435881|pir||D69191 proteasome, alpha
subunit - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2621771|gb|AAB85191.1| (AE000848)
proteasome, alpha subunit [Methanobacterium
thermoautotrophicum]
Length = 248
Score = 85.0 bits (207), Expect = 6e-16
Identities = 54/202 (26%), Positives = 105/202 (51%), Gaps = 11/202 (5%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
+GTT++G+ +G+VL D+R + +V K++ KI +IDEH+ A +G V D ++
Sbjct: 34 RGTTSLGVKSKEGIVLVVDKRPT-SKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEK 92
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLN------GARMLPYLAWFLVGGFDEKP-RLY 121
R EA++ + + V++LA + +M G R P+ ++GG + + RL+
Sbjct: 93 ARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVR--PFGTALIIGGVNGRGCRLF 150
Query: 122 SVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIK-RDVFSG 180
D G + E K A G+G A + +Y +D+ + + I++A++A+ A + +
Sbjct: 151 ETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEATEGKTTPES 210
Query: 181 DGIMVVTITEEGYRELSNSRLK 202
I V+ ++ YR L + ++
Sbjct: 211 VEIAVIEAADKKYRRLPDDEIR 232
>gb|AAD53516.1|AF155576_1 (AF155576) proteasome subunit beta 11 [Danio rerio]
Length = 217
Score = 84.7 bits (206), Expect = 8e-16
Identities = 48/190 (25%), Positives = 98/190 (51%), Gaps = 4/190 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLG-NIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
GTT + + + GV++ +D RAS+G + V +K + K+ ++ + + AG + D + ++
Sbjct: 16 GTTILAVKFNGGVIIGSDSRASMGESYVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKM 75
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK--PRLYSVDMM 126
+ + + Q VKA A+++ + + A F+ G+D K P++Y V +
Sbjct: 76 AKFQLSFHSIQMESPPLVKAAASIMRELCYSNKE-ELRAGFITAGWDRKKGPQIYVVSLG 134
Query: 127 GGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVV 186
G + + GSG + Y +D++++ D+ + E + + A+ A+ RD SG + +V
Sbjct: 135 GMLLSQPFTIGGSGSTYIYGYVDAKFKPDMTLEEATQFSTNALALAMGRDNVSGGVVHLV 194
Query: 187 TITEEGYREL 196
ITE G + +
Sbjct: 195 VITEAGVKHI 204
>gb|AAC45614.1| (AF009645) proteasome beta subunit [Mycobacterium smegmatis]
Length = 303
Score = 84.3 bits (205), Expect = 1e-15
Identities = 65/217 (29%), Positives = 105/217 (47%), Gaps = 19/217 (8%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT V + GV++A DRR++ GN++ ++V K++ D++ A AG + RL
Sbjct: 62 GTTIVALKYPGGVLIAGDRRSTQGNMIAGRDVQKVYITDDYTATGIAGTAAIAVEFARLY 121
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLN---GARMLPYLAWFLVGGFD-EKP------R 119
E + Y G ++ + LA M+ GA + ++A L+ G+D + P R
Sbjct: 122 AVELEHYEKLEGVPLTFRGKVNRLAIMVRGNLGAALQGFVALPLLVGYDLDDPHPEGAGR 181
Query: 120 LYSVDMMGG--ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
+ S D GG I E+ Y + GSG FA S + Y + +K+AVEA+ A D
Sbjct: 182 IVSFDAAGGWNIEEEGYQSVGSGSIFAKSSMKKLYSQVSDADSALKVAVEALYDAADDDS 241
Query: 178 FSGDGIMV-------VTITEEGYRELSNSRLKAILRQ 207
+G +V VTI EG E+ +R+ + R+
Sbjct: 242 ATGGPDLVRGIYPTAVTIGAEGAEEVPETRIAELARE 278
>pir||T23336 hypothetical protein K05C4.1 - Caenorhabditis elegans
>gi|3924797|emb|CAB04567.1| (Z81564) contains similarity
to Pfam domain: PF00227 (Proteasome A-type and B-type),
Score=135.9, E-value=2.4e-37, N=1~cDNA EST EMBL:T00391
comes from this gene~cDNA EST EMBL:T00392 comes from
this gene~cDNA EST yk633d10.3 comes from this gene~cDNA
EST>
Length = 284
Score = 83.5 bits (203), Expect = 2e-15
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 8/180 (4%)
Query: 9 KGTTTVGIVCSD-------GVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGD 61
KGTTT+ V G+++A D RAS G + +K+V KI I + + AG D
Sbjct: 63 KGTTTLAFVYEPATPADKGGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAAD 122
Query: 62 ILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRL 120
R++ LY + ++V A + AN L G R +V G+D+K P++
Sbjct: 123 CQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQI 182
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
+ VD G + K + GSG AY +LD+ Y+ + E K+ + AI A RD SG
Sbjct: 183 FKVDSEGDRCQLKVCSVGSGSLNAYGILDNHYKPKMTDDEARKLGLRAIMHATYRDSGSG 242
>pir||A70512 probable prcB protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2253050|emb|CAB10714.1| (Z97559) prcB [Mycobacterium
tuberculosis]
Length = 291
Score = 82.3 bits (200), Expect = 4e-15
Identities = 66/216 (30%), Positives = 100/216 (45%), Gaps = 19/216 (8%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT V + GVV+A DRR++ GN++ ++V K++ D++ A AG + RL
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLY 116
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNG---ARMLPYLAWFLVGGFD-------EKPR 119
E + Y G ++ LA M+ G A M LA L+ G+D R
Sbjct: 117 AVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGR 176
Query: 120 LYSVDMMGG--ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
+ S D GG I E+ Y A GSG FA S + Y + G+++AVEA+ A D
Sbjct: 177 IVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDS 236
Query: 178 FSGDGIMV-------VTITEEGYRELSNSRLKAILR 206
+G +V V I +G ++ SR+ + R
Sbjct: 237 ATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELAR 272
>pir||S72848 proteasome beta chain - Mycobacterium leprae
>gi|467003|gb|AAA17188.1| (U00017) prcB; B2126_C1_173
[Mycobacterium leprae] >gi|4200274|emb|CAA22933.1|
(AL035310) putative proteasome beta-type subunit 2
[Mycobacterium leprae]
Length = 291
Score = 81.9 bits (199), Expect = 5e-15
Identities = 65/217 (29%), Positives = 101/217 (45%), Gaps = 19/217 (8%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT V + GVV+A DRR++ GN++ ++V K++ D++ A AG + RL
Sbjct: 56 GTTIVVLKYPGGVVIAGDRRSTQGNMIAGRDVRKVYITDDYTATGIAGIAAVAVEFARLY 115
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNG---ARMLPYLAWFLVGGFD-------EKPR 119
E + Y G ++ LA M+ A M LA L+ G+D R
Sbjct: 116 AVELEHYEKLEGVPLTFAGKVNRLAIMVRSNLTAAMQGLLALPLLAGYDIHAPDPQSAGR 175
Query: 120 LYSVDMMGG--ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
+ S D GG I E+ Y + GSG FA S + Y + +++A+EA+ A D
Sbjct: 176 IVSFDAAGGWNIEEEGYQSVGSGSIFAKSSIKKLYSQVSDADSALRVAIEALYDAADDDS 235
Query: 178 FSGDGIMV-------VTITEEGYRELSNSRLKAILRQ 207
+G +V VTI EG E++ SR+ + R+
Sbjct: 236 ATGGPDLVRGIYPTAVTIGAEGAAEVTESRIAELARE 272
>emb|CAB97490.1| (AJ297366) 20S proteasome subunit [Giardia intestinalis]
Length = 207
Score = 80.4 bits (195), Expect = 1e-14
Identities = 51/190 (26%), Positives = 95/190 (49%), Gaps = 4/190 (2%)
Query: 7 KFKGTTTVGIVCSDGVVLAADRRASLG-NIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
++ G+ +GI D V LAAD+R + N +I ++ + + AG D+L
Sbjct: 6 EYNGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQTDVLTT 65
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGF--DEKPRLYSV 123
R +R ++ LY+ Q + + +A A ++++ L R PY ++ GF D KP L ++
Sbjct: 66 YRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAM 125
Query: 124 DMMGGITE-DKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG 182
D +G + + + AG+ +F + ++ + D+ E + + + I SA RD +SG G
Sbjct: 126 DTIGCLDDCTNFQIAGTASDFLLGLCETHVKPDMSEDEILPLMEQIIRSATNRDAYSGWG 185
Query: 183 IMVVTITEEG 192
VV + +G
Sbjct: 186 AHVVVLRRDG 195
>emb|CAC13120.1| (AJ271723) low molecular mass polypeptide subunit PSMB9 [Takifugu
rubripes]
Length = 216
Score = 80.0 bits (194), Expect = 2e-14
Identities = 49/187 (26%), Positives = 89/187 (47%), Gaps = 2/187 (1%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GTT + + DGVVL +D R S G V + + K+ + + + A +G D + ++
Sbjct: 17 GTTIIAVEFDDGVVLGSDSRVSAGKAVVNRVMNKLSPLHDKIYCALSGSAADAQTIAEIV 76
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE-KPRLYSVDMMGG 128
+ ++ + G+ V++ A L+ N+ + +A +V G+D+ K + G
Sbjct: 77 NYQLDVHSVEIGEDPLVRSAANLVKNISYKYKE-ELMAHLIVAGWDKRKGGQVFATLNGL 135
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+T + GSG + Y +D+EYR+ + E + V ++ A+ RD SG +VTI
Sbjct: 136 LTRQPFAVGGSGSSYVYGFVDAEYRKGMSKEEAQQFVVNTLSLAMNRDGSSGGVAYIVTI 195
Query: 189 TEEGYRE 195
E E
Sbjct: 196 DEHNAEE 202
>pir||T26649 hypothetical protein Y38A8.2 - Caenorhabditis elegans
>gi|1280152|gb|AAA98018.1| (U55855) similar to the
proteasome B-type family [Caenorhabditis elegans]
Length = 204
Score = 79.6 bits (193), Expect = 3e-14
Identities = 49/187 (26%), Positives = 95/187 (50%), Gaps = 3/187 (1%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
+ G T V + + V +A+D R A + K+HK+ + + + AG D ++
Sbjct: 6 YTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLE 65
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE--KPRLYSVDM 125
+ LY + + + + L+ +++N+ R Y LV G D+ KP + +D
Sbjct: 66 KIMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDT 125
Query: 126 MGGITEDK-YVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
+G ++ + +VA G+G E+ V ++ +RE++K E + ++I S ++RD SG G +
Sbjct: 126 IGCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDELFEATAQSILSCLERDAASGWGAV 185
Query: 185 VVTITEE 191
V TIT++
Sbjct: 186 VYTITKD 192
>sp|P25156|PRCA_THEAC PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
ALPHA SUBUNIT) >gi|1076173|pir||S55350 multicatalytic
endopeptidase complex (EC 3.4.99.46) alpha chain -
Thermoplasma acidophilum >gi|1633359|pdb|1PMA|A Chain A,
Proteasome From Thermoplasma Acidophilum
>gi|1633361|pdb|1PMA|C Chain C, Proteasome From
Thermoplasma Acidophilum >gi|1633362|pdb|1PMA|D Chain D,
Proteasome From Thermoplasma Acidophilum
>gi|1633363|pdb|1PMA|E Chain E, Proteasome From
Thermoplasma Acidophilum >gi|1633364|pdb|1PMA|F Chain F,
Proteasome From Thermoplasma Acidophilum
>gi|1633365|pdb|1PMA|G Chain G, Proteasome From
Thermoplasma Acidophilum >gi|1633366|pdb|1PMA|H Chain H,
Proteasome From Thermoplasma Acidophilum
>gi|1633367|pdb|1PMA|I Chain I, Proteasome From
Thermoplasma Acidophilum >gi|1633368|pdb|1PMA|J Chain J,
Proteasome From Thermoplasma Acidophilum
>gi|1633369|pdb|1PMA|K Chain K, Proteasome From
Thermoplasma Acidophilum >gi|1633370|pdb|1PMA|L Chain L,
Proteasome From Thermoplasma Acidophilum
>gi|1633371|pdb|1PMA|M Chain M, Proteasome From
Thermoplasma Acidophilum >gi|1633372|pdb|1PMA|N Chain N,
Proteasome From Thermoplasma Acidophilum
>gi|1633373|pdb|1PMA|O Chain O, Proteasome From
Thermoplasma Acidophilum >gi|395159|emb|CAA42094.1|
(X59507) alpha-subunit of the proteasome [Thermoplasma
acidophilum] >gi|10640633|emb|CAC12411.1| (AL445067)
proteasome alpha subunit [Thermoplasma acidophilum]
Length = 233
Score = 78.8 bits (191), Expect = 4e-14
Identities = 56/205 (27%), Positives = 102/205 (49%), Gaps = 12/205 (5%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
KG+T +G+ ++GV+L +D++ ++ ++ KI ID+++A +G V D LV
Sbjct: 33 KGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 91
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLN------GARMLPYLAWFLVGGFDE-KPRLY 121
R A+ G ++++ L +A+ + G R PY + G D+ PRL+
Sbjct: 92 ARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVR--PYGVSLIFAGIDQIGPRLF 149
Query: 122 SVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKR-DVFSG 180
D G I E K A GSG + S L+ EY+E+L +E + + ++A+ S+++ +
Sbjct: 150 DCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKA 209
Query: 181 DGIMVVTITEEGYRELSNSRLKAIL 205
I +T+ + YR +K L
Sbjct: 210 PEIASITVGNK-YRIYDQEEVKKFL 233
>gb|AAD53038.1|AF115541_1 (AF115541) low molecular mass protein 2 [Oncorhynchus mykiss]
Length = 217
Score = 78.4 bits (190), Expect = 6e-14
Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 5/195 (2%)
Query: 4 LTEKFK-GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDI 62
L+E+ K GTT + I GVVL +D R S G V + + K+ + + + A +G D
Sbjct: 11 LSEEVKTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADA 70
Query: 63 LNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKP--RL 120
+ ++ + ++ + G+ V++ ATL+ N+ + A +V G+D++ ++
Sbjct: 71 QTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKE-DLSAHLIVAGWDKRGGGQV 129
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
Y V + G ++ + GSG + Y +D+EYR+ + + + V ++ A+ RD SG
Sbjct: 130 Y-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188
Query: 181 DGIMVVTITEEGYRE 195
+VTI E+G E
Sbjct: 189 GVAYLVTIDEKGAEE 203
>gi|6322459 Subunit of 20S proteasome; Pre3p [Saccharomyces cerevisiae]
>gi|1172606|sp|P38624|PRCD_YEAST PROTEASOME COMPONENT
PRE3 PRECURSOR (MACROPAIN SUBUNIT PRE3) (PROTEINASE YSCE
SUBUNIT PRE3) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
SUBUNIT PRE3) >gi|2118153|pir||S61337 multicatalytic
endopeptidase complex (EC 3.4.99.46) chain PRE3 - yeast
(Saccharomyces cerevisiae) >gi|2131077|emb|CAA89290.1|
(Z49276) ORF YJL001w [Saccharomyces cerevisiae]
Length = 215
Score = 78.0 bits (189), Expect = 7e-14
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 4/189 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
GT+ + + DGV+L AD R + G + + K+ ++ + + +G D + ++
Sbjct: 19 GTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 78
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMG 127
+ +LY +Q G + A + L A +V G+D+K + +Y++ + G
Sbjct: 79 QYHLELYTSQYGTPSTETAASVFKELCYENKDNLT--AGIIVAGYDDKNKGEVYTIPLGG 136
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ + Y AGSG F Y D +RE++ E + +++ AIK D SG I +V
Sbjct: 137 SVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVV 196
Query: 188 ITEEGYREL 196
+T G L
Sbjct: 197 LTAAGVERL 205
>gb|AAD28715.1|AF112117_1 (AF112117) low molecular mass polypeptide complex subunit 2
[Oncorhynchus mykiss]
Length = 217
Score = 78.0 bits (189), Expect = 7e-14
Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 5/195 (2%)
Query: 4 LTEKFK-GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDI 62
L+E+ K GTT + I GVVL +D R S G V + + K+ + + + A +G D
Sbjct: 11 LSEEVKTGTTIIAIEFDGGVVLGSDSRVSAGETVVNRVMNKLSLLHDKIYCALSGSAADS 70
Query: 63 LNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKP--RL 120
+ ++ + ++ + G+ V++ ATL+ N+ + A +V G+D++ ++
Sbjct: 71 QTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKE-ELSAHLIVAGWDKRGGGQV 129
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
Y V + G ++ + GSG + Y +D+EYR+ + + + V ++ A+ RD SG
Sbjct: 130 Y-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTLSLAMSRDGSSG 188
Query: 181 DGIMVVTITEEGYRE 195
+VTI E+G E
Sbjct: 189 GVAYLVTIDEKGAEE 203
>sp|Q9YC01|PRCA_AERPE PROTEASOME ALPHA SUBUNIT (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
ALPHA SUBUNIT) >gi|7435889|pir||A72624 probable
proteasome, alpha subunit APE1449 - Aeropyrum pernix
(strain K1) >gi|5105133|dbj|BAA80447.1| (AP000061) 258aa
long hypothetical proteasome , alpha subunit [Aeropyrum
pernix]
Length = 258
Score = 78.0 bits (189), Expect = 7e-14
Identities = 56/216 (25%), Positives = 109/216 (49%), Gaps = 23/216 (10%)
Query: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGD---ILNL 65
KG T++GI ++GVV+AA++R +G +V ++ KI+KID+H+ +A AG GD +++
Sbjct: 37 KGWTSLGIKTNEGVVIAAEKRF-IGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDY 95
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLN------GARMLPYLAWFLVGGFDEKPR 119
R+ +L Y G+ V+ +A ++A++ G R F D +
Sbjct: 96 ARVFTVRHRLLY---GEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTK 152
Query: 120 LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFS 179
+Y D G K +A GSG + A + + YR D+ + E K+A++ + + I++ V
Sbjct: 153 VYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALKILYAIIRKTVED 212
Query: 180 GD----------GIMVVTITEEGYRELSNSRLKAIL 205
+ + +T+ E + +++ ++K I+
Sbjct: 213 KEKAIATLPDQVELAYITVKERMFTKMTKEQVKEIV 248
>pir||T21350 hypothetical protein F25H2.9 - Caenorhabditis elegans
>gi|3876333|emb|CAB02097.1| (Z79754) contains similarity
to Pfam domain: PF00227 (Proteasome A-type and B-type),
Score=168.0, E-value=5.3e-47, N=1~cDNA EST EMBL:T00300
comes from this gene~cDNA EST EMBL:T00299 comes from
this gene~cDNA EST yk92h1.3 comes from this gene~cDNA
EST y>
Length = 248
Score = 76.5 bits (185), Expect = 2e-13
Identities = 53/213 (24%), Positives = 108/213 (49%), Gaps = 18/213 (8%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G+T++GI S+GV+LAA++R S ++ + KI K+D+H+ + AG + D LV
Sbjct: 34 GSTSIGIKTSEGVLLAAEKR-STSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERA 92
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANM--------LNGARMLPYLAWFLVGGFD-EKPRL 120
+ EA+ ++ +++ V+ + +AN+ + + P+ L G D E +L
Sbjct: 93 QIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQEGAKL 152
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
+ +D G + K + G+ + A L +Y + L ++EG+K+A+ + ++ + S
Sbjct: 153 FHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMALAILKQVMEEKLNSA 212
Query: 181 DGIMVV---TITEEG-----YRELSNSRLKAIL 205
+ +VV T+ +G + +SN L ++
Sbjct: 213 NVEVVVIKPTVDAKGRPIGEFTRVSNEELDQVI 245
>emb|CAA09603.1| (AJ011383) 20S proteasome beta subunit [Cicer arietinum]
Length = 238
Score = 76.1 bits (184), Expect = 3e-13
Identities = 57/197 (28%), Positives = 90/197 (44%), Gaps = 35/197 (17%)
Query: 2 LQLTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGD 61
+Q+ + KGTTT+ + +GV++AAD + N
Sbjct: 47 IQMVKPAKGTTTLAFIFKEGVMVAADCQFWHRN--------------------------- 79
Query: 62 ILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRL 120
L + +L+ + +R+SV + LLAN+L R + ++ G+DE P L
Sbjct: 80 -------LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGL 132
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
Y VD GG + + GSG +AY VLDS Y+ D+ + E ++A AI A RD SG
Sbjct: 133 YYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKYDMSIEEASELARRAIYHATFRDGASG 192
Query: 181 DGIMVVTITEEGYRELS 197
V + G+++LS
Sbjct: 193 GVASVYYVGPTGWKKLS 209
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution >gi|3114290|pdb|1RYP|V Chain V,
Crystal Structure Of The 20s Proteasome From Yeast At
2.4 Angstroms Resolution
Length = 205
Score = 76.1 bits (184), Expect = 3e-13
Identities = 47/189 (24%), Positives = 87/189 (45%), Gaps = 4/189 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G + + + DGV+L AD R + G + + K+ ++ + + +G D + ++
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIV 68
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMG 127
+ +LY +Q G + A + L A +V G+D+K + +Y++ + G
Sbjct: 69 QYHLELYTSQYGTPSTETAASVFKELCYENKDNLT--AGIIVAGYDDKNKGEVYTIPLGG 126
Query: 128 GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVT 187
+ + Y AGSG F Y D +RE++ E + +++ AIK D SG I +V
Sbjct: 127 SVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVV 186
Query: 188 ITEEGYREL 196
+T G L
Sbjct: 187 LTAAGVERL 195
>gb|AAC32069.1| (AF043533) 20S proteasome beta subunit PBC2 [Arabidopsis thaliana]
Length = 204
Score = 76.1 bits (184), Expect = 3e-13
Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 5/193 (2%)
Query: 7 KFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLV 66
++ G+ V +V + +A+DRR + A + +I KI +HL I +G D+ L
Sbjct: 5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLY 64
Query: 67 RLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGF--DEKPRLYSVD 124
+ L KLY + + M + A+L++ +L R P+L ++ G D KP + ++D
Sbjct: 65 QRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMD 124
Query: 125 MMGG--ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG 182
+G + +D +V +G+ E Y ++ ++ D++ E + +A+ S++ RD SG G
Sbjct: 125 SIGAKELAKD-FVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWG 183
Query: 183 IMVVTITEEGYRE 195
V +T + +E
Sbjct: 184 GHVYVVTPKEVKE 196
>dbj|BAA19766.1| (D89724) LMP2 [Oryzias latipes]
Length = 213
Score = 75.7 bits (183), Expect = 4e-13
Identities = 52/194 (26%), Positives = 92/194 (46%), Gaps = 3/194 (1%)
Query: 4 LTEKFK-GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDI 62
++E+ K GTT + I + GVVL +D R S G+ V + + K+ + + + A +G D
Sbjct: 7 ISEEVKTGTTIIAIEFNGGVVLGSDSRVSAGDSVVNRVMNKLSPLHDRIYCALSGSAADA 66
Query: 63 LNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYS 122
+ ++ + ++ + + V++ ATL+ N+ + A +V G+D +
Sbjct: 67 QTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKE-ELSAHLIVAGWDRRDGGQV 125
Query: 123 VDMMGGI-TEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGD 181
+GG+ T + GSG + Y +D+EYR + E K V + A+ RD SG
Sbjct: 126 FATLGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTLALAMNRDGSSGG 185
Query: 182 GIMVVTITEEGYRE 195
+VTI E E
Sbjct: 186 VAYIVTIDEHSTDE 199
>emb|CAB86711.1| (AL163505) 20S proteasome alpha 5 subunit [Leishmania major]
Length = 244
Score = 75.7 bits (183), Expect = 4e-13
Identities = 62/208 (29%), Positives = 102/208 (48%), Gaps = 14/208 (6%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G+T++GI GVVLAA++R +V +++KI +ID H+A +G V D LV
Sbjct: 34 GSTSLGIRTPKGVVLAAEKRVP-STLVVPSSMSKIMEIDSHIAAVMSGMVADARILVEHA 92
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANML------NGARML---PYLAWFLVGGFDEK-PR 119
R E++ + + MSV++ ++ G R L P+ L+ G DEK P+
Sbjct: 93 RVESQNHRFTYNEPMSVESCTLATCDLSIQFGESGGKRKLMSRPFGVSLLIAGVDEKGPQ 152
Query: 120 LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFS 179
L+ D G T A G G E A SV Y ++ + EG +AV+ + + D S
Sbjct: 153 LWQTDPSGTHTRYDAQAIGGGAEAAQSVFTERYHRNMTLEEGETLAVDILKQ-VMEDQLS 211
Query: 180 GDGIMVVTI-TEEGYREL-SNSRLKAIL 205
+ I V + ++G + + + +KAI+
Sbjct: 212 PENIEVAVVRADDGKLHMYTPTEIKAIM 239
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
>gi|11513440|pdb|1G65|2 Chain 2, Crystal Structure Of
Epoxomicin:20s Proteasome Reveals A Molecular Basis For
Selectivity Of Alpha,Beta-Epoxyketone Proteasome
Inhibitors >gi|11514005|pdb|1G0U|N Chain N, A Gated
Channel Into The Proteasome Core Particle
>gi|11514019|pdb|1G0U|2 Chain 2, A Gated Channel Into
The Proteasome Core Particle
Length = 196
Score = 75.7 bits (183), Expect = 4e-13
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 4/188 (2%)
Query: 11 TTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLR 70
T+ + + DGV+L AD R + G + + K+ ++ + + +G D + +++
Sbjct: 1 TSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQ 60
Query: 71 AEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMGG 128
+LY +Q G + A + L A +V G+D+K + +Y++ + G
Sbjct: 61 YHLELYTSQYGTPSTETAASVFKELCYENKDNLT--AGIIVAGYDDKNKGEVYTIPLGGS 118
Query: 129 ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTI 188
+ + Y AGSG F Y D +RE++ E + +++ AIK D SG I +V +
Sbjct: 119 VHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVL 178
Query: 189 TEEGYREL 196
T G L
Sbjct: 179 TAAGVERL 186
>sp|P34119|PRC9_DICDI PROTEASOME SUBUNIT DD4 (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
SUBUNIT DD4) >gi|347509|gb|AAA33233.1| (L22212)
proteasome [Dictyostelium discoideum]
Length = 250
Score = 75.3 bits (182), Expect = 5e-13
Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 12/207 (5%)
Query: 13 TVGIVCSDGVVLAADRRASLGNIVYAKNVT-KIHKIDEHLAIAGAGDVGDILNLVRLLRA 71
TVGI+ DG+VLAA+++ + + + +++ K+ KIDEH+ A AG D L+ R
Sbjct: 34 TVGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARL 93
Query: 72 EAKLYYAQSGKRMSVKALATLLANMLNG----ARMLPYLAWFLVGGFDEKP--RLYSVDM 125
++ ++ Q + M V+ L + + + G + P+ FL G+D +LY D
Sbjct: 94 SSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGFQLYQSDP 153
Query: 126 MGGITEDKYVA-AGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
G K + G + A SVL S Y+ D+ ++E +++A++ + + R + + +
Sbjct: 154 SGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSEKLE 213
Query: 185 VVTITEEG----YRELSNSRLKAILRQ 207
T++G Y + + L A +++
Sbjct: 214 FSYFTKQGDNVVYHIFTAAELDAFIKE 240
>gb|AAD41426.1|AC007727_15 (AC007727) Identical to gb|Y13173 Arabidopsis thaliana mRNA for
proteasome subunit. EST gb|T76747 comes from this gene
Length = 204
Score = 75.3 bits (182), Expect = 5e-13
Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 7/190 (3%)
Query: 7 KFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLV 66
++ G+ V +V + +A+DRR + A + +I KI + + I +G D+ L
Sbjct: 5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLY 64
Query: 67 RLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGF--DEKPRLYSVD 124
+ L KLY + + M + A+L++ +L R PYL ++ G D+KP + ++D
Sbjct: 65 QRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMD 124
Query: 125 MMGG--ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG 182
+G + +D +V +G+ E Y ++ Y+ D++ E + +A+ S++ RD SG G
Sbjct: 125 SIGAKELAKD-FVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWG 183
Query: 183 --IMVVTITE 190
+ +VT TE
Sbjct: 184 GHVYIVTPTE 193
>emb|CAA67761.1| (X99382) alpha proteasome [Entamoeba histolytica]
Length = 247
Score = 74.5 bits (180), Expect = 8e-13
Identities = 55/213 (25%), Positives = 109/213 (50%), Gaps = 13/213 (6%)
Query: 5 TEKFK-GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDIL 63
TE K G+T +GI +GVVLA ++R S ++ ++ KI +ID+H+ A +G D
Sbjct: 28 TEAMKLGSTVIGIQTKEGVVLAVEKRIS-SPLMLGSSIEKIIEIDDHIGAAVSGLTADAR 86
Query: 64 NLVRLLRAEAKLYYAQSGKRMSVKALATLLANML----NGARML-----PYLAWFLVGGF 114
L+ R EA+ + + ++V+ +A ++++ G+R P+ L+ G
Sbjct: 87 TLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGV 146
Query: 115 DEK-PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAI 173
DE PRL+ D G E A G+G E A S+L +Y + + +RE +A+ + +
Sbjct: 147 DETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVM 206
Query: 174 KRDVFSGD-GIMVVTITEEGYRELSNSRLKAIL 205
+ + S + + +VT+ ++ + + + ++ ++
Sbjct: 207 EEKLNSKNVEVALVTVEKKKFEIMDTAFIENLI 239
>emb|CAC13119.1| (AJ271723) low molecular mass polypeptide subunit PSMB9-L [Takifugu
rubripes]
Length = 217
Score = 74.1 bits (179), Expect = 1e-12
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 4/190 (2%)
Query: 10 GTTTVGIVCSDGVVLAADRRASL-GNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
GTT + GVV+ +D RAS+ G V +K + K+ K+ + + AG + D + +
Sbjct: 16 GTTILAATFDGGVVIGSDSRASMGGEYVSSKTINKVIKVHDRIFCCMAGSLADAQAVTKA 75
Query: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK--PRLYSVDMM 126
+ + Q V + A++L + + A F+ G+D + P++Y V +
Sbjct: 76 AKFHLSFHSVQMETPPLVISAASVLKELCYQNKE-ELQAGFITAGWDSRKGPQVYVVALG 134
Query: 127 GGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVV 186
G + GSG + Y +D++Y+ ++ E ++ A A+ A+ RD SG +V
Sbjct: 135 GMLVRQPVTIGGSGSSYIYGYVDAKYKPNMSREECLQFATNALALAMGRDNVSGGVANLV 194
Query: 187 TITEEGYREL 196
ITE G L
Sbjct: 195 VITETGVEHL 204
>emb|CAA55591.1| (X78991) proteasomal subunit Pre3 [Saccharomyces cerevisiae]
>gi|854572|emb|CAA60921.1| (X87611) proteasome component
pre3 [Saccharomyces cerevisiae] >gi|741845|prf||2008180A
peptidyl-Glu protease [Saccharomyces cerevisiae]
Length = 193
Score = 73.7 bits (178), Expect = 1e-12
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 4/185 (2%)
Query: 14 VGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEA 73
+ + DGV+L AD R + G + + K+ ++ + + +G D + +++
Sbjct: 1 MAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHL 60
Query: 74 KLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMMGGITE 131
+LY +Q G + A + L A +V G+D+K + +Y++ + G + +
Sbjct: 61 ELYTSQYGTPSTETAASVFKELCYENKDNLT--AGIIVAGYDDKNKGEVYTIPLGGSVHK 118
Query: 132 DKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEE 191
Y AGSG F Y D +RE++ E + +++ AIK D SG I +V +T
Sbjct: 119 LPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAA 178
Query: 192 GYREL 196
G L
Sbjct: 179 GVERL 183
>gb|AAC32146.1| (AF051246) probable proteasome subunit [Picea mariana]
Length = 204
Score = 73.0 bits (176), Expect = 2e-12
Identities = 50/187 (26%), Positives = 93/187 (48%), Gaps = 5/187 (2%)
Query: 7 KFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLV 66
++ G+ V +V + +A+DRR + A + +I KI + L + +G D+ L
Sbjct: 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLY 64
Query: 67 RLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGF--DEKPRLYSVD 124
+ KLY + + M + A+L++ +L R PY ++ G D+KP + ++D
Sbjct: 65 QRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMD 124
Query: 125 MMGG--ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG 182
+G + +D +V AG+ E Y +S Y+ D++ E + +A+ S+I RD SG G
Sbjct: 125 SIGAKELAKD-FVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWG 183
Query: 183 IMVVTIT 189
V ++
Sbjct: 184 GHVYVVS 190
>sp|O73817|PRCT_ONCMY PROTEASOME THETA CHAIN (MACROPAIN THETA CHAIN) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX THETA CHAIN) (PROTEASOME CHAIN 13)
(PROTEASOME COMPONENT C10-II) >gi|3063687|gb|AAC14141.1|
(AF058707) proteasome subunit C10-11 [Oncorhynchus
mykiss]
Length = 205
Score = 73.0 bits (176), Expect = 2e-12
Identities = 52/201 (25%), Positives = 102/201 (49%), Gaps = 9/201 (4%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
+ G + + V +AADRR + + + KI + + L I AG D+ + +
Sbjct: 6 YNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQ 65
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK---PRLYSVD 124
L+ LY + G+++ K ++++N+L R PY ++ G D K P + S+D
Sbjct: 66 RLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLD 125
Query: 125 MMG--GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG 182
++G +TED +V +G+ E Y + +S + D++ + + +A+ +A+ RD SG G
Sbjct: 126 LIGCPMVTED-FVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMG 184
Query: 183 IMVVTITEEGYRELSNSRLKA 203
++V I ++ +++ LKA
Sbjct: 185 VVVQVIEKD---KITTRTLKA 202
>pir||S27332 proteasome chain LMP2 - human >gi|36059|emb|CAA44603.1| (X62741)
interferon-inducible. Proteasome-related gene.
Proteasome generates peptides, enabling antigen
presentation. [Homo sapiens] >gi|228223|prf||1718344A
RING12 gene [Homo sapiens]
Length = 219
Score = 72.6 bits (175), Expect = 3e-12
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 2/188 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + GVV+ +D R S G V + K+ + EH+ A +G D +
Sbjct: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHEHIYCALSGSAADAQAV 75
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDM 125
+ + +L+ + + V A A ++ N+ R A +V G+D++
Sbjct: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGT 134
Query: 126 MGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
+GG +T + GSG F Y +D+ Y+ + E + +AI A+ RD SG I
Sbjct: 135 LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIY 194
Query: 185 VVTITEEG 192
+VTIT G
Sbjct: 195 LVTITAAG 202
>gi|7106387 proteasome (prosome, macropain) subunit, alpha type 5 [Mus
musculus] >gi|3805976|gb|AAC69149.1| (AF019661) zeta
proteasome chain; PSMA5 [Mus musculus]
Length = 241
Score = 72.6 bits (175), Expect = 3e-12
Identities = 49/207 (23%), Positives = 100/207 (47%), Gaps = 11/207 (5%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G+T +GI S+GV LA ++R + ++ ++ KI +ID H+ A +G + D L+
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRIT-SPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANML---------NGARMLPYLAWFLVGGFDEK-PR 119
R E + ++ + M+V+++ ++N+ GA P+ L GG DEK P+
Sbjct: 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152
Query: 120 LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFS 179
L+ +D G + A GS E A S L Y + + ++E IK ++ + ++ + +
Sbjct: 153 LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNA 212
Query: 180 GDGIMVVTITEEGYRELSNSRLKAILR 206
+ + + + + L+ +++
Sbjct: 213 TNIELATVQPGQNFHMFTKEELEEVIK 239
>pir||S17521 multicatalytic endopeptidase complex (EC 3.4.99.46) zeta chain -
human
Length = 241
Score = 72.2 bits (174), Expect = 4e-12
Identities = 49/207 (23%), Positives = 100/207 (47%), Gaps = 11/207 (5%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G+T +GI S+GV LA ++R + ++ ++ KI +ID H+ A +G + D L+
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRIT-SPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANML---------NGARMLPYLAWFLVGGFDEK-PR 119
R E + ++ + M+V+++ ++N+ GA P+ L GG DEK P+
Sbjct: 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152
Query: 120 LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFS 179
L+ +D G + A GS E A S L Y + + ++E IK ++ + ++ + +
Sbjct: 153 LFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNA 212
Query: 180 GDGIMVVTITEEGYRELSNSRLKAILR 206
+ + + + + L+ +++
Sbjct: 213 TNIELATVQPGQNFHMFTKEELEEVIK 239
>gi|4506187 proteasome (prosome, macropain) subunit, alpha type, 5; Proteasome
component 5 [Homo sapiens]
>gi|464456|sp|P28066|PRCZ_HUMAN PROTEASOME ZETA CHAIN
(MACROPAIN ZETA CHAIN) (MULTICATALYTIC ENDOPEPTIDASE
COMPLEX ZETA CHAIN) >gi|296740|emb|CAA43962.1| (X61970)
macropain subunit zeta [Homo sapiens]
Length = 241
Score = 72.2 bits (174), Expect = 4e-12
Identities = 49/207 (23%), Positives = 100/207 (47%), Gaps = 11/207 (5%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G+T +GI S+GV LA ++R + ++ ++ KI +ID H+ A +G + D L+
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRIT-SPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANML---------NGARMLPYLAWFLVGGFDEK-PR 119
R E + ++ + M+V+++ ++N+ GA P+ L GG DEK P+
Sbjct: 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152
Query: 120 LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFS 179
L+ +D G + A GS E A S L Y + + ++E IK ++ + ++ + +
Sbjct: 153 LFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNA 212
Query: 180 GDGIMVVTITEEGYRELSNSRLKAILR 206
+ + + + + L+ +++
Sbjct: 213 TNIELATVQPGQNFHMFTKEELEEVIK 239
>pir||A55632 proteasome LMP2.s - human >gi|392959|gb|AAC50154.1| (U01025) LMP-2
[Homo sapiens] >gi|896224|gb|AAC60646.1| (S75169)
proteasome LMP2.s=class II MHC encoded {alternatively
spliced} [human, EBV-transformed B lymphoblastoid typing
cell lines, Peptide, 209 aa] [Homo sapiens]
Length = 209
Score = 72.2 bits (174), Expect = 4e-12
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 2/193 (1%)
Query: 1 MLQLTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVG 60
ML+ E GTT + + GVV+ +D R S G V + K+ + E + A +G
Sbjct: 1 MLRAGEVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAA 60
Query: 61 DILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRL 120
D + + + +L+ + + V A A ++ N+ R A +V G+D++
Sbjct: 61 DAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGG 119
Query: 121 YSVDMMGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFS 179
+GG +T + GSG F Y +D+ Y+ + E + +AI A+ RD S
Sbjct: 120 QVYGTLGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSS 179
Query: 180 GDGIMVVTITEEG 192
G I +VTIT G
Sbjct: 180 GGVIYLVTITAAG 192
>pir||T29206 hypothetical protein T20F5.2 - Caenorhabditis elegans
>gi|1703615|gb|AAB37663.1| (U80442) coded for by C.
elegans cDNA CEESC71F; similar to the S25B family of
peptidases [Caenorhabditis elegans]
Length = 202
Score = 72.2 bits (174), Expect = 4e-12
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 7/192 (3%)
Query: 14 VGIVCSDGVVLAADRRA-SLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAE 72
VGI + V+LAAD+ + G I+ K +++ + L + G+ GD+ +
Sbjct: 8 VGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKRN 67
Query: 73 AKLYYAQSGKRMSVKALATLLANML-NGARMLP-YLAWFLVGGFDEKPR---LYSVDMMG 127
+LY ++G +S + + G R Y L+GG+D+K L SVD +
Sbjct: 68 LQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYLA 127
Query: 128 -GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVV 186
G+ + Y+ G F Y+++D EY++D+ EG+ + + I A +R V + G VV
Sbjct: 128 NGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAEGLALMNKCIGEAKRRFVANIPGYKVV 187
Query: 187 TITEEGYRELSN 198
I ++GYR+L +
Sbjct: 188 IIDKKGYRKLDD 199
>gb|AAG13340.1|AF266220_1 (AF266220) proteasome subunit beta type 1 [Gillichthys mirabilis]
Length = 181
Score = 72.2 bits (174), Expect = 4e-12
Identities = 34/110 (30%), Positives = 62/110 (55%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
F G T + + D ++A+D R S G +++++ K +K+ + I +G GD L L +
Sbjct: 19 FNGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTK 78
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK 117
++ A K+Y + K M+ A+A +L+ +L G R PY + ++GG DE+
Sbjct: 79 IIDARLKMYKHSNNKMMTCGAIAAMLSTILYGRRFFPYYVYNIIGGLDEE 128
>gb|AAD53519.1|AF155579_1 (AF155579) proteasome subunit beta 9A [Danio rerio]
Length = 218
Score = 71.8 bits (173), Expect = 6e-12
Identities = 52/195 (26%), Positives = 98/195 (49%), Gaps = 5/195 (2%)
Query: 4 LTEKFK-GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDI 62
L+E+ K GTT + + GVV+ +D R S G V + + K+ + + + A +G D
Sbjct: 12 LSEEVKTGTTIIAVTFDGGVVIGSDSRVSAGESVVNRVMNKLSPLHDKIYCALSGSAADA 71
Query: 63 LNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKP--RL 120
+ ++ + ++ + V + ATL+ N+ + A +V G+D+K ++
Sbjct: 72 QTIAEIVNYQLDVHSIEVEDDPLVCSAATLVKNISYKYKE-ELSAHLIVAGWDKKGGGQV 130
Query: 121 YSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSG 180
Y+ + G +T+ + GSG + +D+EY++++ RE + V A+ A+ RD SG
Sbjct: 131 YAT-LSGLLTKQPFAIGGSGSFYINGFVDAEYKKNMTKRECQEFVVNALTLAMGRDGSSG 189
Query: 181 DGIMVVTITEEGYRE 195
VVTI ++G E
Sbjct: 190 GVAYVVTIDKDGTEE 204
>gi|8394072 proteasome (prosome, macropain) subunit, alpha type 5 [Rattus
norvegicus] >gi|464457|sp|P34064|PRCZ_RAT PROTEASOME
ZETA CHAIN (MACROPAIN ZETA CHAIN) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX ZETA CHAIN) >gi|285143|pir||JX0229
multicatalytic endopeptidase complex (EC 3.4.99.46) zeta
chain - rat >gi|286254|dbj|BAA01588.1| (D10756)
proteasome subunit R-ZETA [Rattus sp.]
Length = 241
Score = 71.4 bits (172), Expect = 7e-12
Identities = 49/207 (23%), Positives = 99/207 (47%), Gaps = 11/207 (5%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
G+T +GI S+GV LA ++R + ++ ++ KI +ID H+ A +G + D L+
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRIT-SPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 70 RAEAKLYYAQSGKRMSVKALATLLANML---------NGARMLPYLAWFLVGGFDEK-PR 119
R E + ++ + M+V+++ ++N+ GA P+ L GG DEK P+
Sbjct: 93 RVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQ 152
Query: 120 LYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFS 179
L+ +D G + A GS E A S L Y + ++E IK ++ + ++ + +
Sbjct: 153 LFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEAIKSSLIILKQVMEEKLNA 212
Query: 180 GDGIMVVTITEEGYRELSNSRLKAILR 206
+ + + + + L+ +++
Sbjct: 213 TNIELATVQPGQNFHMFTKEELEEVIK 239
>gi|6755202 proteasome (prosome, macropain) subunit, beta type, 3 [Mus
musculus] >gi|9910831|sp|Q9R1P1|PRCT_MOUSE PROTEASOME
THETA CHAIN (MACROPAIN THETA CHAIN) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX THETA CHAIN) (PROTEASOME CHAIN 13)
(PROTEASOME COMPONENT C10-II)
>gi|5757661|gb|AAD50537.1|AF060092_1 (AF060092)
proteasome subunit C10-II [Mus musculus]
Length = 205
Score = 71.0 bits (171), Expect = 1e-11
Identities = 50/200 (25%), Positives = 99/200 (49%), Gaps = 7/200 (3%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
+ G + + + V +AADRR + + + KI + + L I AG D+ + +
Sbjct: 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQ 65
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE---KPRLYSVD 124
L+ LY + G+++ L +++AN+L R PY ++ G D KP + S+D
Sbjct: 66 RLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD 125
Query: 125 MMG-GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGI 183
++G + D +V +G+ E Y + +S + ++ + +A+ +A+ RD SG G+
Sbjct: 126 LIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGV 185
Query: 184 MVVTITEEGYRELSNSRLKA 203
+V I ++ +++ LKA
Sbjct: 186 IVHVIEKD---KITTRTLKA 202
>dbj|BAA96836.1| (AB026565) beta 3 subunit of 20S proteasome [Oryza sativa]
Length = 204
Score = 71.0 bits (171), Expect = 1e-11
Identities = 49/193 (25%), Positives = 95/193 (48%), Gaps = 5/193 (2%)
Query: 7 KFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLV 66
++ G+ V +V + +A+DRR + A + ++ KI + L I +G D L
Sbjct: 5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLY 64
Query: 67 RLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGF--DEKPRLYSVD 124
+ L KLY + + M + A+L++ +L R PY ++ G D +P + ++D
Sbjct: 65 QRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMD 124
Query: 125 MMGG--ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDG 182
+G + +D +V +G+ E Y +S Y+ +++ E + +A+ S++ RD SG G
Sbjct: 125 CIGAKELAKD-FVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWG 183
Query: 183 IMVVTITEEGYRE 195
V+ +T +E
Sbjct: 184 GFVLLVTPTEVKE 196
>gi|8394082 proteasome (prosome, macropain) subunit, beta type, 3 [Rattus
norvegicus] >gi|730380|sp|P40112|PRCT_RAT PROTEASOME
THETA CHAIN (MACROPAIN THETA CHAIN) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX THETA CHAIN) (PROTEASOME CHAIN 13)
(PROTEASOME COMPONENT C10-II) >gi|631877|pir||S40468
proteasome subunit RC10-Ii - rat
>gi|458731|dbj|BAA04824.1| (D21800) proteasome subunit
RC10-II [Rattus sp.]
Length = 205
Score = 70.6 bits (170), Expect = 1e-11
Identities = 50/200 (25%), Positives = 99/200 (49%), Gaps = 7/200 (3%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
+ G + + + V +AADRR + + + KI + + L I AG D+ + +
Sbjct: 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQ 65
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE---KPRLYSVD 124
L+ LY + G+++ L +++AN+L R PY ++ G D KP + S+D
Sbjct: 66 RLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD 125
Query: 125 MMG-GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGI 183
++G + D +V +G+ E Y + +S + ++ + +A+ +A+ RD SG G+
Sbjct: 126 LIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGV 185
Query: 184 MVVTITEEGYRELSNSRLKA 203
+V I ++ +++ LKA
Sbjct: 186 IVHIIEKD---KITTRTLKA 202
>gi|8567394 proteosome (prosome, macropain) subunit, beta type 9 (large
multifunctional protease 2); large multifunctional
protease 2 [Mus musculus] >gi|984353|gb|AAA75306.1|
(U22919) 20S proteasome subunit Lmp2 [Mus musculus]
>gi|2073368|dbj|BAA19855.1| (D43620) Lmp2 [Mus musculus]
>gi|2467361|dbj|BAA22582.1| (D44461) low molecular mass
polypeptide complex subunit 2 [Mus musculus molossinus]
>gi|2555189|gb|AAB81528.1| (AF027865) 20S proteasome
subunit lmp2 [Mus musculus]
Length = 219
Score = 70.2 bits (169), Expect = 2e-11
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + GVV+ +D R S G V + K+ + +H+ A +G D +
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQHIFCALSGSAADAQAI 75
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDM 125
+ + +L+ + + V A A ++ N+ R LA +V G+D+
Sbjct: 76 ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYRE-DLLAHLIVAGWDQCEGGQVYGT 134
Query: 126 MGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
MGG + + GSG + Y +D+ Y+ + E + +AI A+ RD SG I
Sbjct: 135 MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIY 194
Query: 185 VVTITEEG 192
+VTIT G
Sbjct: 195 LVTITAAG 202
>gi|4506197 proteasome (prosome, macropain) subunit, beta type, 3; Proteasome
subunit, beta type, 3 [Homo sapiens]
>gi|1709763|sp|P49720|PRCT_HUMAN PROTEASOME THETA CHAIN
(MACROPAIN THETA CHAIN) (MULTICATALYTIC ENDOPEPTIDASE
COMPLEX THETA CHAIN) (PROTEASOME CHAIN 13) (PROTEASOME
COMPONENT C10-II) >gi|1082466|pir||S50149 HsC10-II
protein - human >gi|7513167|pir||S55041 multicatalytic
endopeptidase complex (EC 3.4.99.46) beta chain C10-II -
human >gi|565647|dbj|BAA05645.1| (D26598) proteasome
subunit HsC10-II [Homo sapiens]
>gi|1091575|prf||2021261C proteasome:SUBUNIT=HsC10-II
[Homo sapiens]
Length = 205
Score = 69.9 bits (168), Expect = 2e-11
Identities = 50/200 (25%), Positives = 99/200 (49%), Gaps = 7/200 (3%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
+ G + + + V +AADRR + + + KI + + L I AG D+ + +
Sbjct: 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQ 65
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE---KPRLYSVD 124
L+ LY + G+++ L +++AN+L R PY ++ G D KP + S+D
Sbjct: 66 RLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD 125
Query: 125 MMG-GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGI 183
++G + D +V +G+ E Y + +S + ++ + +A+ +A+ RD SG G+
Sbjct: 126 LIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGV 185
Query: 184 MVVTITEEGYRELSNSRLKA 203
+V I ++ +++ LKA
Sbjct: 186 IVHIIEKD---KITTRTLKA 202
>gi|11424309 similar to proteasome (prosome, macropain) subunit, beta type, 3
(H. sapiens) [Homo sapiens]
Length = 205
Score = 69.9 bits (168), Expect = 2e-11
Identities = 50/200 (25%), Positives = 99/200 (49%), Gaps = 7/200 (3%)
Query: 8 FKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVR 67
+ G + + + V +AADRR + + + KI + + L I AG D+ + +
Sbjct: 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQ 65
Query: 68 LLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDE---KPRLYSVD 124
L+ LY + G+++ L +++AN+L R PY ++ G D KP + S+D
Sbjct: 66 RLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD 125
Query: 125 MMG-GITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGI 183
++G + D +V +G+ E Y + +S + ++ + +A+ +A+ RD SG G+
Sbjct: 126 LIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGV 185
Query: 184 MVVTITEEGYRELSNSRLKA 203
+V I ++ +++ LKA
Sbjct: 186 IVHIIEKD---KITTRTLKA 202
>gi|4506205 proteasome (prosome, macropain) subunit, beta type, 9 (large
multifunctional protease 2); Proteasome subunit, beta
type, 9 [Homo sapiens] >gi|11417916|ref|XP_004222.1|
proteasome (prosome, macropain) subunit, beta type, 9
(large multifunctional protease 2) [Homo sapiens]
>gi|417529|sp|P28065|PRC7_HUMAN PROTEASOME CHAIN 7
PRECURSOR (MACROPAIN CHAIN 7) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX CHAIN 7) (RING12 PROTEIN)
>gi|34635|emb|CAA47024.1| (X66401) proteasome related
[Homo sapiens] >gi|34656|emb|CAA78700.1| (Z14977)
MHC-encoded proteasome subunit gene [Homo sapiens]
>gi|1054744|emb|CAA60784.1| (X87344) LMP2 [Homo sapiens]
Length = 219
Score = 69.5 bits (167), Expect = 3e-11
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 2/188 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + GVV+ +D R S G V + K+ + E + A +G D +
Sbjct: 16 EVHTGTTIMAVEFDGGVVMGSDSRVSAGEAVVNRVFDKLSPLHERIYCALSGSAADAQAV 75
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDM 125
+ + +L+ + + V A A ++ N+ R A +V G+D++
Sbjct: 76 ADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYRE-DLSAHLMVAGWDQREGGQVYGT 134
Query: 126 MGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
+GG +T + GSG F Y +D+ Y+ + E + +AI A+ RD SG I
Sbjct: 135 LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAIALAMSRDGSSGGVIY 194
Query: 185 VVTITEEG 192
+VTIT G
Sbjct: 195 LVTITAAG 202
>dbj|BAA96830.1| (AB026559) alpha 2 subunit of 20S proteasome [Oryza sativa]
Length = 235
Score = 69.5 bits (167), Expect = 3e-11
Identities = 50/209 (23%), Positives = 99/209 (46%), Gaps = 6/209 (2%)
Query: 4 LTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDIL 63
LT G T++GI ++GVV+A +++ +V +V KI + ++ + +G D
Sbjct: 26 LTAVGSGQTSLGIKAANGVVIATEKKLP-SILVDETSVQKIQSLTPNIGVVYSGMGPDFR 84
Query: 64 NLVRLLRAEAKLYYAQSGKRMSVKAL----ATLLANMLNGARMLPYLAWFLVGGFDEK-P 118
LVR R +A+ YY + + V L A ++ + P+ L+ G+D+ P
Sbjct: 85 VLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGP 144
Query: 119 RLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVF 178
+LY VD G K A G + A + L+ Y ED+++ + I A+ + + +
Sbjct: 145 QLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQIS 204
Query: 179 SGDGIMVVTITEEGYRELSNSRLKAILRQ 207
+ + + + ++ ++ LS + +K L +
Sbjct: 205 ANNIEIGIIRSDREFKVLSPAEIKDFLEE 233
>pir||JC2019 multicatalytic endopeptidase complex (EC 3.4.99.46) chain Lmp-2 -
mouse >gi|2118155|pir||A47294 gene Lmp-2 protein - mouse
>gi|509035|dbj|BAA40680.1| (D14566) LMP-2 polypeptide
[Mus musculus] >gi|984355|gb|AAA75307.1| (U22920) 20S
proteasome subunit Lmp2 [Mus musculus]
>gi|2467347|dbj|BAA22575.1| (D44454) low molecular mass
polypeptide complex subunit 2 [Mus musculus castaneus]
>gi|2467353|dbj|BAA22578.1| (D44457) low molecular mass
polypeptide complex subunit 2 [Mus musculus molossinus]
Length = 219
Score = 69.1 bits (166), Expect = 4e-11
Identities = 50/188 (26%), Positives = 85/188 (44%), Gaps = 2/188 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + GVV+ +D R S G V + K+ + + + A +G D +
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAI 75
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDM 125
+ + +L+ + + V A A ++ N+ R LA +V G+D++
Sbjct: 76 ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYRE-DLLAHLIVAGWDQREGGQVYGT 134
Query: 126 MGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
MGG + + GSG + Y +D+ Y+ + E + +AI A+ RD SG I
Sbjct: 135 MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIY 194
Query: 185 VVTITEEG 192
+VTIT G
Sbjct: 195 LVTITAAG 202
>gb|AAC35982.1| (AF088914) proteasome alpha subunit [Petunia x hybrida]
Length = 249
Score = 69.1 bits (166), Expect = 4e-11
Identities = 48/197 (24%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 12 TTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRA 71
+ +GI DGVVL +++ + + + + K++KID+H+A A AG + D L+ R
Sbjct: 33 SAIGISSKDGVVLVGEKKVTSKLLQTSTSSEKMYKIDDHVACAVAGIMSDANILINTARV 92
Query: 72 EAKLYYAQSGKRMSVKALATLLANMLNG----ARMLPYLAWFLVGGFDEK--PRLYSVDM 125
+A+ Y + M V+ L L + G + P+ FL G+D+ +L+ D
Sbjct: 93 QAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQYGGLPPFGVSFLFAGWDKNFGFQLFMSDP 152
Query: 126 MGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMV 185
G K A G+ + A S+L +Y++D+ E +++A++ ++ + + + + +
Sbjct: 153 SGNYAGWKAAAIGANNQAAQSMLKQDYKDDITREEAVQLALKVLSKTMDSTSLTSEKLEL 212
Query: 186 VTITEEGYRELSNSRLK 202
+ LSN ++K
Sbjct: 213 AEVF------LSNGKVK 223
>dbj|BAA22577.1| (D44456) low molecular mass polypeptide complex subunit 2 [Mus
musculus bactrianus]
Length = 219
Score = 68.7 bits (165), Expect = 5e-11
Identities = 50/188 (26%), Positives = 85/188 (44%), Gaps = 2/188 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + GVV+ +D R S G V + K+ + + + A +G D +
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAI 75
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDM 125
+ + +L+ + + V A A ++ N+ R LA +V G+D++
Sbjct: 76 ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYRE-DLLAHLIVAGWDQREGGQVYGT 134
Query: 126 MGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
MGG + + +GSG + Y +D+ Y+ + E + AI A+ RD SG I
Sbjct: 135 MGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIY 194
Query: 185 VVTITEEG 192
+VTIT G
Sbjct: 195 LVTITAAG 202
>sp|O23708|PRC3_ARATH PROTEASOME COMPONENT C3 (MACROPAIN SUBUNIT C3) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX SUBUNIT C3)
>gi|2511574|emb|CAA73619.1| (Y13176) multicatalytic
endopeptidase [Arabidopsis thaliana]
>gi|3421075|gb|AAC32056.1| (AF043520) 20S proteasome
subunit PAB1 [Arabidopsis thaliana]
>gi|4966368|gb|AAD34699.1|AC006341_27 (AC006341)
Identical to gb|Y13176 Arabidopsis thaliana mRNA for
proteasome subunit prc3. ESTs gb|H36972, gb|T22551 and
gb|T13800 come from this gene
Length = 235
Score = 68.7 bits (165), Expect = 5e-11
Identities = 50/181 (27%), Positives = 86/181 (46%), Gaps = 6/181 (3%)
Query: 4 LTEKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDIL 63
LT G T++GI S+GVV+A +++ +V +V KI + ++ + +G D
Sbjct: 26 LTAVGSGQTSLGIKASNGVVIATEKKLP-SILVDEASVQKIQHLTPNIGVVYSGMGPDFR 84
Query: 64 NLVRLLRAEA----KLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-P 118
LVR R +A +LY V+ AT++ + P+ LV G+D+K P
Sbjct: 85 VLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGP 144
Query: 119 RLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVF 178
+LY VD G K A G + A + L+ Y ED+++ + I A+ + + ++
Sbjct: 145 QLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEIS 204
Query: 179 S 179
S
Sbjct: 205 S 205
>sp|P28076|PRC7_MOUSE PROTEASOME CHAIN 7 PRECURSOR (MACROPAIN CHAIN 7) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX CHAIN 7) (RING12 PROTEIN)
>gi|237568|gb|AAB20105.1| (S59862) low molecular mass
polypeptide complex subunit 2, LMP-2=rat proteasome
homolog [mice, Peptide, 219 aa] [Mus sp.]
>gi|984349|gb|AAA75304.1| (U22447) 20S proteasome
subunit Lmp2 [Mus musculus] >gi|984351|gb|AAA75305.1|
(U22448) 20S proteasome subunit Lmp2 [Mus musculus]
>gi|1209537|gb|AAA98932.1| (U35323) low molecular weight
protein 2 Lmp2 [Mus musculus]
>gi|2467355|dbj|BAA22579.1| (D44458) low molecular mass
polypeptide complex subunit 2 [Mus musculus]
>gi|2467359|dbj|BAA22581.1| (D44460) low molecular mass
polypeptide complex subunit 2 [Mus spretus]
>gi|2467363|dbj|BAA22583.1| (D44462) low molecular mass
polypeptide complex subunit 2 [Mus spretus]
>gi|228222|prf||1718343A LMP-2 gene [Mus musculus]
Length = 219
Score = 68.3 bits (164), Expect = 6e-11
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 2/188 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + GVV+ +D R S G V + K+ + + + A +G D +
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAI 75
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDM 125
+ + +L+ + + V A A ++ N+ R LA +V G+D++
Sbjct: 76 ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYRE-DLLAHLIVAGWDQREGGQVYGT 134
Query: 126 MGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
MGG + + GSG + Y +D+ Y+ + E + AI A+ RD SG I
Sbjct: 135 MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIY 194
Query: 185 VVTITEEG 192
+VTIT G
Sbjct: 195 LVTITAAG 202
>gi|6981426 low molecular mass polypeptide 2 [Rattus norvegicus]
>gi|464445|sp|P28077|PRC7_RAT PROTEASOME CHAIN 7
PRECURSOR (MACROPAIN CHAIN 7) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX CHAIN 7) (RING12 PROTEIN)
>gi|285142|pir||JX0231 proteasome ring12 chain - rat
>gi|286252|dbj|BAA01589.1| (D10757) proteasome subunit
R-RING12 [Rattus sp.]
Length = 219
Score = 68.3 bits (164), Expect = 6e-11
Identities = 50/188 (26%), Positives = 85/188 (44%), Gaps = 2/188 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + GVV+ +D R S G V + K+ + + + A +G D +
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGAAVVNRVFDKLSPLHQRIYCALSGSAADAQAI 75
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDM 125
+ + +L+ + + V A A ++ N+ R LA +V G+D+
Sbjct: 76 ADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYRE-DLLAHLMVAGWDQHEGGQVYGT 134
Query: 126 MGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
MGG + + GSG + Y +D+ Y+ + E + +AI A+ RD SG I
Sbjct: 135 MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAITLAMNRDGSSGGVIY 194
Query: 185 VVTITEEG 192
+VTIT +G
Sbjct: 195 LVTITADG 202
>dbj|BAA22584.1| (D44463) low molecular mass polypeptide complex subunit 2 [Mus
spicilegus]
Length = 219
Score = 68.3 bits (164), Expect = 6e-11
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 2/188 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + GVV+ +D R S G V + K+ + + + A +G D +
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAI 75
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDM 125
+ + +L+ + + V A A ++ N+ R LA +V G+D++
Sbjct: 76 ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYRE-DLLAHLIVAGWDQREGGQVYGT 134
Query: 126 MGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
MGG + + GSG + Y +D+ Y+ + E + AI A+ RD SG I
Sbjct: 135 MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIY 194
Query: 185 VVTITEEG 192
+VTIT G
Sbjct: 195 LVTITAAG 202
>sp|O73672|PRC3_CARAU PROTEASOME COMPONENT C3 (MACROPAIN SUBUNIT C3) (MULTICATALYTIC
ENDOPEPTIDASE COMPLEX SUBUNIT C3) (PROTEASOME ALPHA-2
SUBUNIT) >gi|3107927|dbj|BAA25915.1| (AB013342)
proteasome alpha 2 subunit [Carassius auratus]
Length = 234
Score = 68.3 bits (164), Expect = 6e-11
Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
Query: 10 GTTTVGIVCSDGVVLAADRRASLGNIVY-AKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
G +VGI S+GVVLA +++ +I+Y ++V KI I +H+ + +G D LVR
Sbjct: 32 GAPSVGIKASNGVVLATEKKQK--SILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRR 89
Query: 69 LRAEAKLYYAQSGKRMS----VKALATLLANMLNGARMLPYLAWFLVGGFDE-KPRLYSV 123
R A+ Y+ + + V+ +A+++ + P+ L+ G+DE +P L+
Sbjct: 90 ARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEDRPYLFQS 149
Query: 124 DMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGI 183
D G K A G + L+ Y EDL++ + I A+ + + + + + + I
Sbjct: 150 DPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQM-TEENI 208
Query: 184 MVVTITEEGYRELSNSRLKAIL 205
V E G+R LS + +K L
Sbjct: 209 EVGICNEAGFRRLSPAEVKDYL 230
>dbj|BAA19761.1| (D87690) proteasome subunit Y [Lampetra japonica]
Length = 231
Score = 67.9 bits (163), Expect = 8e-11
Identities = 45/189 (23%), Positives = 86/189 (44%), Gaps = 3/189 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + +DGVV AD R + G+ V + K+ + + + +G D +
Sbjct: 27 EVLTGTTIMAVEFADGVVFGADSRTTSGSYVANRVTDKLTPVHDRIFCCRSGSAADTQAI 86
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKP--RLYSV 123
++ + + + + V A L + R +A +V G+D++ ++Y+V
Sbjct: 87 ADVVNYQLGFHSIEMEEMPLVHTAANLFKDYCYRYRE-ELMAGIIVAGWDKRKGGQVYTV 145
Query: 124 DMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGI 183
+ G + + GSG + Y +DS Y+ + E ++ +A++ A+ RD SG I
Sbjct: 146 PLGGMLVRQPFSVGGSGSTYIYGFVDSNYKTGMTKEECMEFTAKALSLAMSRDGSSGGVI 205
Query: 184 MVVTITEEG 192
+ IT G
Sbjct: 206 RMAAITAGG 214
>dbj|BAA22580.1| (D44459) low molecular mass polypeptide complex subunit 2 [Mus
platythrix]
Length = 219
Score = 67.9 bits (163), Expect = 8e-11
Identities = 50/188 (26%), Positives = 84/188 (44%), Gaps = 2/188 (1%)
Query: 6 EKFKGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNL 65
E GTT + + GVV+ +D R S G V + K+ + + + A +G D +
Sbjct: 16 EVHTGTTIMAVEFDGGVVVGSDSRVSAGEAVVNRVFDKLSPLHQRIFCALSGSAADAQAI 75
Query: 66 VRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPRLYSVDM 125
+ + +L+ + + V A A ++ N+ R LA +V G+D++
Sbjct: 76 ADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYRE-DLLAHLIVAGWDQREGGQVYGT 134
Query: 126 MGG-ITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIM 184
MGG + + GSG + Y +D+ Y+ + E + AI A+ RD SG I
Sbjct: 135 MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAITLAMNRDGSSGGVIY 194
Query: 185 VVTITEEG 192
+VTIT G
Sbjct: 195 LVTITVAG 202
>gb|AAF37284.1|AF226673_1 (AF226673) 20S proteasome beta 4 subunit [Trypanosoma brucei]
Length = 206
Score = 67.9 bits (163), Expect = 8e-11
Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 14/201 (6%)
Query: 12 TTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRA 71
TT+G C D V++AA + I KI ++D H +A AG+ G + V ++
Sbjct: 4 TTIGFRCQDFVLVAAAGLNAFYYIKITDTEDKITELDSHKVVACAGENGPRTHFVEYVKC 63
Query: 72 EAKLY-YAQSGKRMSVKALATLLANMLNGA---RMLPYLAWFLVGGFDEKP--------- 118
L + G+ +S A A+ + N L GA R Y L+ GFD
Sbjct: 64 NMALKKMREHGRMISTHATASFMRNTLAGALRSRDGLYPVNCLLAGFDVPASAEDDVATG 123
Query: 119 -RLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDV 177
LY +D +G + E Y G G F ++LD +R +L +EG+++ + + KR V
Sbjct: 124 AHLYYLDYLGTLQEVPYGCHGYGAPFVTAMLDRMWRPNLTAQEGVELMQKCCDEVNKRVV 183
Query: 178 FSGDGIMVVTITEEGYRELSN 198
S + + + ++G + +
Sbjct: 184 VSNNTFICKAVPKDGVERVQS 204
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.137 0.376
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66820539
Number of Sequences: 2977
Number of extensions: 2528611
Number of successful extensions: 6847
Number of sequences better than 1.0e-10: 226
Number of HSP's better than 0.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 194
Number of HSP's that attempted gapping in prelim test: 6562
Number of HSP's gapped (non-prelim): 229
length of query: 207
length of database: 189,106,746
effective HSP length: 58
effective length of query: 149
effective length of database: 154,394,500
effective search space: 23004780500
effective search space used: 23004780500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)