BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1868 (PAB1868) DE:mRNA 3'-end processing factor, putative
(651 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75118 probable mRNA 3'-end processing factor PAB1868 - Pyr... 1303 0.0
pir||F71013 hypothetical protein PH1404 - Pyrococcus horikoshii ... 1272 0.0
sp|Q58633|YC36_METJA HYPOTHETICAL PROTEIN MJ1236 >gi|2128070|pir... 769 0.0
pir||F69027 cleavage and polyadenylation specificity factor - Me... 743 0.0
gi|11498093 mRNA 3'-end processing factor, putative [Archaeoglob... 707 0.0
gb|AAG18954.1| (AE004996) mRNA 3'-end processing factor homolog;... 631 e-180
emb|CAB57542.1| (Y18930) mRNA 3'-end polyadenylation factor [Sul... 619 e-176
gb|AAK41056.1| mRNA 3'-end processing factor, putative [Sulfolob... 619 e-176
pir||C72749 probable cleavage and polyadenylation factor subunit... 542 e-153
emb|CAC11752.1| (AL445064) conserved hypothetical protein [Therm... 481 e-134
sp|Q57626|Y162_METJA HYPOTHETICAL PROTEIN MJ0162 >gi|2129218|pir... 267 2e-70
gb|AAK40713.1| mRNA 3'-end processing factor, putative [Sulfolob... 218 2e-55
pir||G64305 hypothetical protein YLR277c homolog - Methanococcus... 214 2e-54
sp|Q60355|Y047_METJA HYPOTHETICAL PROTEIN MJ0047 >gi|2826239|gb|... 214 2e-54
gb|AAF56931.1| (AE003771) CG1972 gene product [Drosophila melano... 213 6e-54
pir||T20694 hypothetical protein F10B5.8 - Caenorhabditis elegan... 210 5e-53
gi|11498143 mRNA 3'-end processing factor, putative [Archaeoglob... 209 9e-53
pir||T37848 probable cleavage and polyadenylation specifity fact... 204 3e-51
pir||C72774 probable cleavage and polyadenylation specificity fa... 203 5e-51
emb|CAA65151.1| (X95906) Cleavage and Polyadenylation Specifity ... 202 9e-51
gi|7706427 cleavage and polyadenylation specific factor 3, 73kD ... 202 9e-51
gi|9055194 cleavage and polyadenylation specificity factor 3; 73... 201 2e-50
gb|AAD12712.1| (AC006069) putative cleavage and polyadenylation ... 201 2e-50
gb|AAF55578.1| (AE003723) CG7698 gene product [Drosophila melano... 195 1e-48
dbj|BAA33615.1| (AB012956) unknown [Vibrio cholerae] 192 1e-47
pir||F82345 conserved hypothetical protein VC0264 [imported] - V... 190 4e-47
gb|AAF27682.1|AC018908_21 (AC018908) putative cleavage and polya... 187 3e-46
gi|6323307 Ysh1p [Saccharomyces cerevisiae] >gi|1077401|pir||S51... 186 6e-46
pir||C83195 hypothetical protein PA3614 [imported] - Pseudomonas... 182 1e-44
gb|AAG20574.1| (AE005128) mRNA 3'-end processing factor homolog;... 181 2e-44
pir||G75600 cleavage and polyadenylation specificity factor-rela... 170 4e-41
emb|CAC11477.1| (AL445064) conserved hypothetical protein [Therm... 164 2e-39
pir||T18488 hypothetical protein C0825c - malaria parasite (Plas... 156 8e-37
gb|AAB70268.1| (AF017269) 73 kDA subunit of cleavage and polyade... 152 9e-36
dbj|BAB13943.1| (AK021939) unnamed protein product [Homo sapiens] 151 3e-35
gb|AAD54657.1|AF090685_1 (AF090685) hypothetical protein [Vibrio... 149 8e-35
dbj|BAB14541.1| (AK023356) unnamed protein product [Homo sapiens] 123 4e-27
emb|CAB61133.1| (AL132951) predicted using Genefinder; prelimina... 112 1e-23
gb|AAF82809.1|AF283277_1 (AF283277) polyadenylation cleavage/spe... 105 2e-21
dbj|BAB10061.1| (AB005244) cleavage and polyadenylation specific... 104 2e-21
sp|Q10568|CPSB_BOVIN CLEAVAGE AND POLYADENYLATION SPECIFICITY FA... 85 2e-15
gi|8393762 cleavage and polyadenylation specific factor 2, 100kD... 84 5e-15
gb|AAD33061.1|AF139986_1 (AF139986) cleavage and polyadenylation... 83 9e-15
gi|11423200 hypothetical protein FLJ20542 [Homo sapiens] 81 3e-14
gb|AAD46873.1|AF160933_1 (AF160933) BcDNA.LD14168 [Drosophila me... 81 5e-14
gi|8923512 hypothetical protein FLJ20542 [Homo sapiens] >gi|7020... 81 5e-14
pir||T32487 hypothetical protein F09G2.4 - Caenorhabditis elegan... 79 2e-13
dbj|BAB01576.1| (AB045994) unnamed protein product [Macaca fasci... 73 8e-12
>pir||F75118 probable mRNA 3'-end processing factor PAB1868 - Pyrococcus abyssi
(strain Orsay) >gi|5458174|emb|CAB49663.1| (AJ248285)
mRNA 3'-end processing factor, putative [Pyrococcus
abyssi]
Length = 651
Score = 1303 bits (3336), Expect = 0.0
Identities = 651/651 (100%), Positives = 651/651 (100%)
Query: 1 MSALIKRETQVDQILKDIRGIVNQMVPREAKITEIEFEGPELVIYVKNPEAIMKDGELIK 60
MSALIKRETQVDQILKDIRGIVNQMVPREAKITEIEFEGPELVIYVKNPEAIMKDGELIK
Sbjct: 1 MSALIKRETQVDQILKDIRGIVNQMVPREAKITEIEFEGPELVIYVKNPEAIMKDGELIK 60
Query: 61 DLAKVLKKRISIRPDPDVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGL 120
DLAKVLKKRISIRPDPDVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGL
Sbjct: 61 DLAKVLKKRISIRPDPDVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGL 120
Query: 121 VIGKNGETLRLITQKVKWAPKVVRTPPLQSQTIYSIRQILQSESKDRRKFLRQVGRNIYR 180
VIGKNGETLRLITQKVKWAPKVVRTPPLQSQTIYSIRQILQSESKDRRKFLRQVGRNIYR
Sbjct: 121 VIGKNGETLRLITQKVKWAPKVVRTPPLQSQTIYSIRQILQSESKDRRKFLRQVGRNIYR 180
Query: 181 KPEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEF 240
KPEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEF
Sbjct: 181 KPEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEF 240
Query: 241 QYVLKEGLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQ 300
QYVLKEGLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQ
Sbjct: 241 QYVLKEGLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQ 300
Query: 301 SNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLH 360
SNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLH
Sbjct: 301 SNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLH 360
Query: 361 NIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTL 420
NIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTL
Sbjct: 361 NIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTL 420
Query: 421 KRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRL 480
KRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRL
Sbjct: 421 KRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRL 480
Query: 481 REQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPD 540
REQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPD
Sbjct: 481 REQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPD 540
Query: 541 PRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRREL 600
PRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRREL
Sbjct: 541 PRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRREL 600
Query: 601 MNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTIRLR 651
MNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTIRLR
Sbjct: 601 MNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTIRLR 651
>pir||F71013 hypothetical protein PH1404 - Pyrococcus horikoshii
>gi|3257827|dbj|BAA30510.1| (AP000006) 651aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 651
Score = 1272 bits (3256), Expect = 0.0
Identities = 627/651 (96%), Positives = 644/651 (98%)
Query: 1 MSALIKRETQVDQILKDIRGIVNQMVPREAKITEIEFEGPELVIYVKNPEAIMKDGELIK 60
M+ LIKRETQVDQIL+DIR +VNQMVP+EAKITEIEFEGPELVIYVKNPEAIMKDGELIK
Sbjct: 1 MTFLIKRETQVDQILRDIRAVVNQMVPKEAKITEIEFEGPELVIYVKNPEAIMKDGELIK 60
Query: 61 DLAKVLKKRISIRPDPDVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGL 120
DLAKVLKKRIS+RPDP+VLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGL
Sbjct: 61 DLAKVLKKRISVRPDPEVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGL 120
Query: 121 VIGKNGETLRLITQKVKWAPKVVRTPPLQSQTIYSIRQILQSESKDRRKFLRQVGRNIYR 180
VIGKNGETLRLITQKVKWAPKVVRTPPLQSQTIYSIRQILQ+ESKDRRKFLRQVGRNIYR
Sbjct: 121 VIGKNGETLRLITQKVKWAPKVVRTPPLQSQTIYSIRQILQTESKDRRKFLRQVGRNIYR 180
Query: 181 KPEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEF 240
KPEYKSRWIRITGLGGFREVGRSALLVQTDES+VLVDFGVNVA LNDPYKAFPHFDAPEF
Sbjct: 181 KPEYKSRWIRITGLGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEF 240
Query: 241 QYVLKEGLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQ 300
QYVL+EGLLDAIIITHAHLDH GMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQ
Sbjct: 241 QYVLREGLLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQ 300
Query: 301 SNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLH 360
SNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLH
Sbjct: 301 SNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLH 360
Query: 361 NIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTL 420
NIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIH T+
Sbjct: 361 NIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTI 420
Query: 421 KRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRL 480
KRGGKVLIPAMAVGRAQEVMMVLE+YARIG I+ PIYLDGMIWEATAIHTAYPEYLSRRL
Sbjct: 421 KRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAIHTAYPEYLSRRL 480
Query: 481 REQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPD 540
REQIFKEGYNPFLSEIFHPVANS+ERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPD
Sbjct: 481 REQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPD 540
Query: 541 PRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRREL 600
P+NSIIFVSYQAEGTLGRQVQSG+REIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRREL
Sbjct: 541 PKNSIIFVSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRREL 600
Query: 601 MNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTIRLR 651
MNYVAKVRPRPER+ITVHGEPQKCLDLATSIHRKFG+STRAPNNLDTIRLR
Sbjct: 601 MNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAPNNLDTIRLR 651
>sp|Q58633|YC36_METJA HYPOTHETICAL PROTEIN MJ1236 >gi|2128070|pir||C64454 hypothetical
protein L9328.4 homolog - Methanococcus jannaschii
>gi|1591868|gb|AAB99240.1| (U67564) putative mRNA 3'-end
processing factor 2 [Methanococcus jannaschii]
Length = 634
Score = 769 bits (1964), Expect = 0.0
Identities = 374/641 (58%), Positives = 493/641 (76%), Gaps = 11/641 (1%)
Query: 12 DQILKDIRGIVNQMVPREAKITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKKRIS 71
+++L++IR + + P+EAKI +++FEGPE+V+YVKNPE E+IK LAK L+KRIS
Sbjct: 4 EEVLENIRKEIIKKSPKEAKIVDVQFEGPEVVVYVKNPEIFTN--EIIKSLAKDLRKRIS 61
Query: 72 IRPDPDVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGLVIGKNGETLRL 131
IRPDP VL+ PE A++ I EIVP+EAEITN FD + GEV+IE+KKPGLVIGK G+TL +
Sbjct: 62 IRPDPSVLVEPEIAKQKILEIVPEEAEITNFVFDANTGEVIIESKKPGLVIGKEGKTLEM 121
Query: 132 ITQKVKWAPKVVRTPPLQSQTIYSIRQILQSESKDRRKFLRQVGRNIYRKPEYKSR-WIR 190
I + ++WAPK VRTPP+QS+TI +IR L E + ++ LR++GR I+R + WIR
Sbjct: 122 IKKAIRWAPKPVRTPPIQSETIKAIRATLYRERHEVKEILRRIGRRIHRDIVVRGDYWIR 181
Query: 191 ITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLD 250
++ LGG REVGRS L VQT ++ VL+D G+NVA + KAFPHFDAPEF +++ LD
Sbjct: 182 VSFLGGAREVGRSCLYVQTPDTRVLIDCGINVACED---KAFPHFDAPEFS--IED--LD 234
Query: 251 AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRP 310
A+I+THAHLDH G +P LFRY +DGP+Y T PTRDLM LLQKD++EI + G++ Y
Sbjct: 235 AVIVTHAHLDHCGFIPGLFRYG-YDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTS 293
Query: 311 RDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
+DIK +KHTI +DYG DISP I+LTLHNAGH+LGSAI HLHIG GL+N+A TGD KF
Sbjct: 294 KDIKTCVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKF 353
Query: 371 IPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPA 430
+RLLEPA +FPRLETL++ESTYG +D+ REEAE+ L+ V+ +T RGGKVLIP
Sbjct: 354 ETSRLLEPAVCQFPRLETLIIESTYGAYDDVLPEREEAERELLRVVSETTDRGGKVLIPV 413
Query: 431 MAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYN 490
VGRAQE+M+VLE+ G +AP+YLDGMIWEATAIHTAYPEYLS+ +R++IF EG N
Sbjct: 414 FGVGRAQELMLVLEEGYNQGIFNAPVYLDGMIWEATAIHTAYPEYLSKEMRQKIFHEGDN 473
Query: 491 PFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSY 550
PFLSE+F V ++ ER+ +IDS+EP +I+A+SGML GGPSVEY K LAPD +N+IIFV Y
Sbjct: 474 PFLSEVFKRVGSTNERRKVIDSDEPCVILATSGMLTGGPSVEYLKHLAPDEKNAIIFVGY 533
Query: 551 QAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPR 610
QAEGTLGR+VQSG +EIP++ G+T+ I +N++V+TI+GFSGH+DR++L+ Y+ +++P
Sbjct: 534 QAEGTLGRKVQSGWKEIPIITRNGKTKSIPINLQVYTIEGFSGHSDRKQLIKYIRRLKPS 593
Query: 611 PERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTIRLR 651
PE++I VHGE KCLD A ++ R F T P NLD IR++
Sbjct: 594 PEKIIMVHGEESKCLDFADTVRRLFKKQTYVPMNLDAIRVK 634
>pir||F69027 cleavage and polyadenylation specificity factor - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622312|gb|AAB85692.1| (AE000888) cleavage and
polyadenylation specificity factor [Methanobacterium
thermoautotrophicum]
Length = 636
Score = 743 bits (1898), Expect = 0.0
Identities = 359/642 (55%), Positives = 481/642 (74%), Gaps = 8/642 (1%)
Query: 11 VDQILKDIRGIVNQMVPREAKITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKKRI 70
V ++L++I+ + Q +P ++ ++EFEGPE+VIY KNPE I ++G LI+D+AK ++KRI
Sbjct: 2 VSEMLEEIKRTIMQRLPERVQVAKVEFEGPEVVIYTKNPEIITENGNLIRDIAKDIRKRI 61
Query: 71 SIRPDPDVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGLVIGKNGETLR 130
IR D VL+ PE+A + I EIVP+EA+ITNI+FD EV+IEA+KPGLVIGK G T R
Sbjct: 62 IIRSDRSVLMDPEKAIRKIHEIVPEEAKITNISFDDVTCEVIIEARKPGLVIGKYGSTSR 121
Query: 131 LITQKVKWAPKVVRTPPLQSQTIYSIRQILQSESKDRRKFLRQVGRNIYRKPEYKSRWIR 190
I + WAPK++RTPP+ S+ I IR+ L+ SK+R+K L+Q+G I++KP+Y + W R
Sbjct: 122 EIVKNTGWAPKILRTPPISSEIIERIRRTLRKNSKERKKILQQLGNRIHQKPKYDNDWAR 181
Query: 191 ITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLD 250
+T +GGFREVGRS L +QT S VL+D GVNVA D ++P+ + PEF LD
Sbjct: 182 LTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAG-GDDKNSYPYLNVPEFTL----DSLD 236
Query: 251 AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRP 310
A+IITHAHLDHSG LPYL+ Y +DGP+Y T PTRDLM LLQ D I+I + +
Sbjct: 237 AVIITHAHLDHSGFLPYLYHYG-YDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNV 295
Query: 311 RDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
+ +K+ +KHTITLDYGEV DI+PDIRLTLHNAGHILGSA+ HLHIG+G HN+ TGDFK+
Sbjct: 296 KHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFKY 355
Query: 371 IPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPA 430
+RLLE A +FPR+ETLVMESTYGG D+Q R AEK L++ I+ TL+RGGK+LIP
Sbjct: 356 EQSRLLEAAANRFPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKILIPV 415
Query: 431 MAVGRAQEVMMVLEDYARIGAID-APIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGY 489
AVGRAQE+M+VLE+Y R G ID P+Y+DGMIWEA AIHTA PEYLS+ LR+QIF G+
Sbjct: 416 FAVGRAQELMIVLEEYIRTGIIDEVPVYIDGMIWEANAIHTARPEYLSKDLRDQIFHMGH 475
Query: 490 NPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVS 549
NPF+S+IFH V ER++I++ EP+II+++SGML GG S+EYFK L DP NS++FV
Sbjct: 476 NPFISDIFHKVNGMDERREIVE-GEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVG 534
Query: 550 YQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRP 609
YQAEG+LGR++Q G +EIP+ E+ + V V M + TI+GFSGH+DRR+LM YV ++ P
Sbjct: 535 YQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKTIEGFSGHSDRRQLMEYVKRISP 594
Query: 610 RPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTIRLR 651
+PE+++ HG+ K LDLA+SI+R + + T+ P NL+T+R++
Sbjct: 595 KPEKILLCHGDNYKTLDLASSIYRTYRIETKTPLNLETVRIQ 636
>gi|11498093 mRNA 3'-end processing factor, putative [Archaeoglobus fulgidus]
>gi|7483885|pir||B69310 mRNA 3'-end processing factor
homolog - Archaeoglobus fulgidus
>gi|2650146|gb|AAB90756.1| (AE001071) mRNA 3'-end
processing factor, putative [Archaeoglobus fulgidus]
Length = 632
Score = 707 bits (1806), Expect = 0.0
Identities = 356/636 (55%), Positives = 472/636 (73%), Gaps = 11/636 (1%)
Query: 15 LKDIRGIVNQMVPREAKITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKKRISIRP 74
L +IR V + +P + ++ IEFEGP+LVIYV+NP+ + + +++K LAK L+KRI IR
Sbjct: 5 LDEIREKVKEYLPPKVRVKSIEFEGPQLVIYVENPQELA-EVDIVKKLAKDLRKRIIIRA 63
Query: 75 DPDVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGLVIGKNGETLRLITQ 134
DP L PPE+A ++I +IVP++A I+NI FD GEV+IEA+KPG+VIGK G T R I +
Sbjct: 64 DPKSLKPPEKARQIIMQIVPEDARISNIFFDEENGEVIIEAEKPGVVIGKQGSTFREIMR 123
Query: 135 KVKWAPKVVRTPPLQSQTIYSIRQILQSESKDRRKFLRQVGRNIYRKPEYKSRWIRITGL 194
V W+P+VVRTPP++S+ I +IR L S ++R + L+++G I+R +W+R+T L
Sbjct: 124 AVGWSPRVVRTPPIKSKIIDNIRNYLLSVREERSEILKRIGERIHRTSLIDEKWVRVTFL 183
Query: 195 GGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAIII 254
GG REVGRS L+QT ES +L+D GVNV+ L+ P+ PE Q + LDA++I
Sbjct: 184 GGSREVGRSCYLLQTPESRILIDCGVNVSNLSST----PYLYVPEVQPL---DALDAVVI 236
Query: 255 THAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIK 314
THAHLDH G++P L+++ + GPIY TPPTRDLMVLLQ DF+E+ G +P Y I+
Sbjct: 237 THAHLDHCGLVPLLYKFG-YRGPIYLTPPTRDLMVLLQLDFLEVAGREGTNPPYSSNLIR 295
Query: 315 EVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTR 374
E +KHTITLDYG V DISPD+RLT +NAGHILGSAI H HIG G +NIA TGDFKF TR
Sbjct: 296 EALKHTITLDYGVVTDISPDVRLTFYNAGHILGSAIAHFHIGEGHYNIAFTGDFKFEKTR 355
Query: 375 LLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVG 434
L + A FPRLE LVME+TYGG ND Q R+EAE+RLIEVI++TL RGGKVLIP AVG
Sbjct: 356 LFDRAATNFPRLEALVMEATYGGPNDFQPSRKEAEERLIEVINRTLDRGGKVLIPTFAVG 415
Query: 435 RAQEVMMVLEDYARIGAI-DAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFL 493
R+QEVM+VLE+ R + + +YLDGMI+EATAIHTAYPEYL+ +LR+ IF G NPF+
Sbjct: 416 RSQEVMIVLEEAMREKRLRETYVYLDGMIYEATAIHTAYPEYLNAQLRDLIFYHGINPFI 475
Query: 494 SEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAE 553
SE F V +S +R+++I P+IIIA+SGML GGP +EYF+ LA D RN+I+FV YQAE
Sbjct: 476 SENFVRVDSSSKREEVISDPSPSIIIATSGMLNGGPVMEYFRHLAEDERNTIVFVGYQAE 535
Query: 554 GTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPER 613
GTLGR++Q G +E+P +GR EV++V MEV T+DGFSGH+DR++LMNY+ + +PE+
Sbjct: 536 GTLGRKIQKGWKEVPF-PVDGRREVVEVKMEVETVDGFSGHSDRKQLMNYIRYLNSKPEK 594
Query: 614 VITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTIR 649
V TVHG+ KC+DLA+SI++ + + TRAP NL+TIR
Sbjct: 595 VATVHGDESKCIDLASSIYKTYRIETRAPMNLETIR 630
>gb|AAG18954.1| (AE004996) mRNA 3'-end processing factor homolog; Epf2
[Halobacterium sp. NRC-1]
Length = 641
Score = 631 bits (1611), Expect = e-180
Identities = 307/645 (47%), Positives = 451/645 (69%), Gaps = 15/645 (2%)
Query: 11 VDQILKDIRGIVNQMVPREAKITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKKRI 70
VD+ L++++ + +P + +T++++EGPELV+Y ++P+ +DG+L++ LA L+KRI
Sbjct: 4 VDRQLEELQDEIVSEIPADISVTDVKYEGPELVVYTRDPKQFAQDGDLVRRLASKLRKRI 63
Query: 71 SIRPDPDVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGLVIGKNGETLR 130
++RPDP VL P+ A + +++P+EA +TN+ F GEV+IEA+KPG+VIG++G TLR
Sbjct: 64 TVRPDPAVLSSPKRARDRVLDVIPEEAGVTNLDFHEDTGEVVIEAEKPGMVIGRHGSTLR 123
Query: 131 LITQKVKWAPKVVRTPPLQSQTIYSIRQILQSESKDRRKFLRQVGRNIYRKPEYKSRWIR 190
ITQ+ W P+VVRTPP++S T+ ++R L+ E +RR L VGR I+R+ ++R
Sbjct: 124 EITQEAGWTPEVVRTPPIESSTVSNVRNFLKQERDERRDILETVGRQIHREEMQDDEYVR 183
Query: 191 ITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALND-PYKAFPHFDAPEFQYVLKEGL- 248
+T LG REVGR++ ++ T E+ +LVD G + ++ PY + Q L G
Sbjct: 184 VTTLGCCREVGRASFVLSTPETRILVDCGDKPGSEDEVPYL--------QVQEALAGGAN 235
Query: 249 -LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 307
+DA+I+THAHLDHS +P LF+Y +DGPIY T PTRDLM LL D++++ G+ P
Sbjct: 236 TIDAVILTHAHLDHSAFIPLLFKYG-YDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRAPP 294
Query: 308 YRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGD 367
Y ++E IKH I L+YG+V DI+PD++LT HNAGHILGSA+ H HIG+GL+N+A +GD
Sbjct: 295 YDSEMVREAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGD 354
Query: 368 FKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVL 427
+ TRL A FPR+ETLVMESTYGG ND Q +E++E++L VI++T + GGKVL
Sbjct: 355 IHYDDTRLFNGAVNDFPRVETLVMESTYGGRNDYQTDQEDSERKLKRVINETYEDGGKVL 414
Query: 428 IPAMAVGRAQEVMMVLEDYARIGAI-DAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFK 486
IPA AVGR+QE+M+VLE+ R G I + PI+LDGMIWEATAIHT YPEYL LR++IF
Sbjct: 415 IPAFAVGRSQEMMLVLEEAMREGEIPEMPIHLDGMIWEATAIHTTYPEYLRDDLRDRIFH 474
Query: 487 EGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSII 546
NPFL+ F+ + +E + + ++ II+++SGM+ GGP + + + +APDP +++
Sbjct: 475 SDSNPFLAPQFNHIDGGEEERQAVADDDQCIILSTSGMVSGGPIMSWLEHIAPDPDSTLT 534
Query: 547 FVSYQAEGTLGRQVQSGVREIPMVGEE--GRTEVIKVNMEVHTIDGFSGHADRRELMNYV 604
FV YQA+GTLGR++QSG +IPM GRTE +++NM V T+DGFSGHADR+ L ++V
Sbjct: 535 FVGYQAQGTLGRRIQSGRDKIPMPDSRSGGRTEHLQLNMGVETVDGFSGHADRQGLEDFV 594
Query: 605 AKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTIR 649
+ PRPE+V+ VHG+ DL+++++ +F + T AP NL+T R
Sbjct: 595 RTMNPRPEKVLCVHGDESSTQDLSSALYHEFNMRTFAPKNLETFR 639
>emb|CAB57542.1| (Y18930) mRNA 3'-end polyadenylation factor [Sulfolobus
solfataricus]
Length = 639
Score = 619 bits (1580), Expect = e-176
Identities = 309/627 (49%), Positives = 441/627 (70%), Gaps = 14/627 (2%)
Query: 28 REAKITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKKRISIRPDPDVLLPPEEAEK 87
+E IT IE+EGP + +YVK P I + GE+IK +AK +KKRI I+ DP V +EA +
Sbjct: 22 KELGITRIEYEGPTIAVYVKKPALITEKGEVIKKIAKDIKKRIVIKADPSVRKDKKEAVE 81
Query: 88 LIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVRTPP 147
+I +VP EAEI +I FD +GEVLI+AKKPGLVIGK G + I + W ++VR PP
Sbjct: 82 IIKNLVPAEAEIVDIKFDDDLGEVLIKAKKPGLVIGKGGSLQQRIFAETFWKAEIVREPP 141
Query: 148 LQSQTIYSIRQILQSESKDRRKFLRQVGRNIYRKPEYKSRWIRITGLGGFREVGRSALLV 207
++S+T SI + + +E++ R K L+ G I+R+ ++ +++RIT LGGF EVGRSA+LV
Sbjct: 142 IKSRTYDSILEHIYNETEYRAKILKVFGERIHRETIFQDKYVRITALGGFLEVGRSAVLV 201
Query: 208 QTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAIIITHAHLDHSGMLPY 267
+T ES VL+D G+N +A K FP D + LK LDA++ITHAHLDH GM+P+
Sbjct: 202 ETPESKVLLDVGLNPSANMFGEKLFPKLDIDQ----LKMEELDAVVITHAHLDHCGMVPF 257
Query: 268 LFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGE 327
LF+Y ++GP+YTT PTRD+M L+Q D +++ + G+ Y +++++ + HTITLDYGE
Sbjct: 258 LFKYG-YEGPVYTTVPTRDIMALMQLDSLDVAEKEGKPIPYSAKEVRKELLHTITLDYGE 316
Query: 328 VRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLE 387
V DI+PDIRLT +NAGHILGS + HLHIG+G HNI TGDFK+ T+LL+ AN +FPR++
Sbjct: 317 VTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGDFKYAKTKLLDKANTEFPRVD 376
Query: 388 TLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEVMMVLEDYA 447
TL+ME+TYG + Q REE+E L+E+I++TL +GGKVLIP +AVGR QE+M+++ D+
Sbjct: 377 TLIMETTYGAQD--QPNREESELELLEIINKTLNKGGKVLIPVLAVGRGQEIMLIINDFM 434
Query: 448 RIGAI-DAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSKER 506
+ I + P+Y+ G++ E TAIH AYPE+L R +RE+I + NPF SE F + KE
Sbjct: 435 KKKLIPEVPVYVTGLVDEVTAIHNAYPEWLGREVREEILYKDENPFTSEHFKRIEGYKED 494
Query: 507 QDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVRE 566
I EP+II+A+SGML GGP+VE+FK +APDP+N+IIFVSYQAEGTLGR+V+ G +E
Sbjct: 495 ---IAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQAEGTLGRKVRDGAKE 551
Query: 567 IPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERVITVHGEPQKCLD 626
+ ++ +GR E I++NMEV ++GFSGH+D+R+L+N++ + P+P+ VI HGE
Sbjct: 552 VQILDRDGRVESIQINMEVEAVEGFSGHSDKRQLLNFLRNIEPKPKNVILNHGEASSIRA 611
Query: 627 LATSIHRK---FGLSTRAPNNLDTIRL 650
A I + + P LD++R+
Sbjct: 612 FANYIREDRLGYKPNIYTPAILDSLRV 638
>gb|AAK41056.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus]
Length = 639
Score = 619 bits (1580), Expect = e-176
Identities = 309/627 (49%), Positives = 441/627 (70%), Gaps = 14/627 (2%)
Query: 28 REAKITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKKRISIRPDPDVLLPPEEAEK 87
+E IT IE+EGP + +YVK P I + GE+IK +AK +KKRI I+ DP V +EA +
Sbjct: 22 KELGITRIEYEGPTIAVYVKKPALITEKGEVIKKIAKDIKKRIVIKADPSVRKDKKEAVE 81
Query: 88 LIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVRTPP 147
+I +VP EAEI +I FD +GEVLI+AKKPGLVIGK G + I + W ++VR PP
Sbjct: 82 IIKNLVPAEAEIVDIKFDDDLGEVLIKAKKPGLVIGKGGSLQQRIFAETFWKAEIVREPP 141
Query: 148 LQSQTIYSIRQILQSESKDRRKFLRQVGRNIYRKPEYKSRWIRITGLGGFREVGRSALLV 207
++S+T SI + + +E++ R K L+ G I+R+ ++ +++RIT LGGF EVGRSA+LV
Sbjct: 142 IKSRTYDSILEHIYNETEYRAKILKVFGERIHRETIFQDKYVRITALGGFLEVGRSAVLV 201
Query: 208 QTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAIIITHAHLDHSGMLPY 267
+T ES VL+D G+N +A K FP D + LK LDA++ITHAHLDH GM+P+
Sbjct: 202 ETPESKVLLDVGLNPSANMFGEKLFPKLDIDQ----LKMEELDAVVITHAHLDHCGMVPF 257
Query: 268 LFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGE 327
LF+Y ++GP+YTT PTRD+M L+Q D +++ + G+ Y +++++ + HTITLDYGE
Sbjct: 258 LFKYG-YEGPVYTTVPTRDIMALMQLDSLDVAEKEGKPIPYSAKEVRKELLHTITLDYGE 316
Query: 328 VRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLE 387
V DI+PDIRLT +NAGHILGS + HLHIG+G HNI TGDFK+ T+LL+ AN +FPR++
Sbjct: 317 VTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGDFKYAKTKLLDKANTEFPRVD 376
Query: 388 TLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEVMMVLEDYA 447
TL+ME+TYG + Q REE+E L+E+I++TL +GGKVLIP +AVGR QE+M+++ D+
Sbjct: 377 TLIMETTYGAQD--QPNREESELELLEIINKTLNKGGKVLIPVLAVGRGQEIMLIINDFM 434
Query: 448 RIGAI-DAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSKER 506
+ I + P+Y+ G++ E TAIH AYPE+L R +RE+I + NPF SE F + KE
Sbjct: 435 KKKLIPEVPVYVTGLVDEVTAIHNAYPEWLGREVREEILYKDENPFTSEHFKRIEGYKED 494
Query: 507 QDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVRE 566
I EP+II+A+SGML GGP+VE+FK +APDP+N+IIFVSYQAEGTLGR+V+ G +E
Sbjct: 495 ---IAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQAEGTLGRKVRDGAKE 551
Query: 567 IPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERVITVHGEPQKCLD 626
+ ++ +GR E I++NMEV ++GFSGH+D+R+L+N++ + P+P+ VI HGE
Sbjct: 552 VQILDRDGRVESIQINMEVEAVEGFSGHSDKRQLLNFLRNIEPKPKNVILNHGEASSIRA 611
Query: 627 LATSIHRK---FGLSTRAPNNLDTIRL 650
A I + + P LD++R+
Sbjct: 612 FANYIREDRLGYKPNIYTPAILDSLRV 638
>pir||C72749 probable cleavage and polyadenylation factor subunit APE0522 -
Aeropyrum pernix (strain K1) >gi|5104171|dbj|BAA79487.1|
(AP000059) 676aa long hypothetical cleavage and
polyadenylation factor subunit [Aeropyrum pernix]
Length = 676
Score = 542 bits (1381), Expect = e-153
Identities = 284/637 (44%), Positives = 417/637 (64%), Gaps = 24/637 (3%)
Query: 28 REAKITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKKRISIRPDPDVLLPPEEAEK 87
R A I IEFEGPE+ +Y++NP+ I+++ ++KDLA+ L+KRI +R P E K
Sbjct: 36 RSADIASIEFEGPEIAVYIRNPKFIVENENVVKDLARKLRKRIVVRTHPKSRKSMEYTIK 95
Query: 88 LIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVRTPP 147
I E VP + I +I FD +GEV + A+KPG ++G+ L+ + W +V R P
Sbjct: 96 FIRENVPPDVGIVDIQFDDVLGEVRVIAEKPGKLMGRGKVFRNLVLAETGWRLEVYRKPL 155
Query: 148 LQSQTIYSIRQILQSESKDRRKFLRQVGRNIYRKPEYKSRWIRITGLGGFREVGRSALLV 207
LQS + S+ + LQ +++RR+ LR +G I+R +R +R+ GLG F EVGRSA+LV
Sbjct: 156 LQSGLLDSVLRHLQRHAEERRRALRDIGERIFRDTLIGTRHVRVVGLGSFGEVGRSAILV 215
Query: 208 QTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAIIITHAHLDHSGMLPY 267
T ES VL+D G++ + ++P++ +PEF + LDA++I+HAHLDH G LP
Sbjct: 216 DTGESKVLLDAGLSPSGYGP--DSYPYYWSPEF----RVDELDAVVISHAHLDHVGTLPL 269
Query: 268 LFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGE 327
LF+Y F GP+Y TPPTRD+M+++ +D I + + +P + PRD+++ + I ++Y
Sbjct: 270 LFKYG-FRGPVYATPPTRDIMIIVLRDLINLMRKAQGEPPFEPRDVEKALTRLIPVNYNT 328
Query: 328 VRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFI------PTRLLEPANA 381
V D++PDI++T NAGHILGS++VHLHIG GL+NI T DFKF TRLL PA
Sbjct: 329 VTDVAPDIKMTFINAGHILGSSMVHLHIGQGLYNILYTADFKFYRIKNDRSTRLLPPAEY 388
Query: 382 KFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEVMM 441
F R+E L+ME+TYG PR EAE+ LI ++++ KRGGK+LIP MAVGR QE+++
Sbjct: 389 SFQRVEALIMEATYGSKE--TQPRAEAEEELINLVNKVYKRGGKLLIPVMAVGRGQEILV 446
Query: 442 VLEDYARIGAI-DAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPV 500
VL + R G I + PIY+DGM++E TA++T YPE L + +R++I K+G NPF V
Sbjct: 447 VLNEALRSGKIPEIPIYVDGMVYEVTAVYTNYPELLVKPIRDRILKQGENPFEGPTTVYV 506
Query: 501 ANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAEGTLGRQV 560
+ +R + + S++PAII+++SGM+ GGP VEYFK LA DPRN++ FVSYQA GTLGR++
Sbjct: 507 TDHYKRDEAMYSDKPAIILSTSGMMNGGPIVEYFKYLADDPRNALAFVSYQAPGTLGRRL 566
Query: 561 QSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERVITVHGE 620
QSG REI + +G IKVNME+ +I+GF+GH+ R EL++++ ++ P+P ++ HGE
Sbjct: 567 QSGEREIEL-EMDGGIRRIKVNMEIVSIEGFTGHSTRGELLSFLRRLNPKPRNIVLNHGE 625
Query: 621 PQKCLDLATSIH---RKFGLST----RAPNNLDTIRL 650
P LA ++ K G + AP NL+ +RL
Sbjct: 626 PSAIAALAHTVKTGWSKLGFESPPIIEAPENLEGVRL 662
>emb|CAC11752.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 497
Score = 481 bits (1225), Expect = e-134
Identities = 240/488 (49%), Positives = 336/488 (68%), Gaps = 7/488 (1%)
Query: 15 LKDIRGIVNQMVPREAKITEIEFEGPELVIYVKNPEAIMKDGELIKDLAKVLKKRISIRP 74
+++ + I N++ P + KIT+I++EGP +V+Y K+PE K +L++ +A+ +++RI+IR
Sbjct: 7 IEETKNIFNRLYP-DNKITDIDYEGPTIVVYTKDPELFAKRDDLVRQIAQEIRRRIAIRS 65
Query: 75 DPDVLLPPEEAEKLIFEIVPKEAEITNIAFDPSVGEVLIEAKKPGLVIGKNGETLRLITQ 134
DP +LLP ++A + I +I+PKEA + +I F+P GEV+IE +P +V + + ++ I
Sbjct: 66 DPSILLPEDQARESIEKIIPKEAGLEDIYFEPDTGEVIIELDEPSIVTARGTDYVQEIKS 125
Query: 135 KVKWAPKVVRTPPLQSQTIYSIRQILQSESKDRRKFLRQVGRNIYRKPEYKSRWIRITGL 194
+ +W+P++VR PP+ S+T+ +R+ ++ ++RR+FL +G + P W+R+T L
Sbjct: 126 RTQWSPRIVRAPPMYSRTVKEVREFMREVKQERREFLHNLGVKLSGPPMVGETWVRLTAL 185
Query: 195 GGFREVGRSALLVQTDESYVLVDFGV-NVAALNDPYKAFPHFDAPEFQYVLKEGLLDAII 253
GG EVGRSA LV T S VL+D G+ NV DP+ A P+ PE Q + +DA+I
Sbjct: 186 GGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYLYVPEVQPL---STIDAVI 242
Query: 254 ITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDI 313
+THAHLDHSG+LP LF+Y +DGP+Y TPPTRDL LLQ D+I++ + G Y + I
Sbjct: 243 LTHAHLDHSGLLPLLFKYG-YDGPVYMTPPTRDLAALLQNDYIKVARMEGGKVPYESKYI 301
Query: 314 KEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPT 373
+E +KHTITL YGE DI+ D+RLT +NAGHILGSA HLHIG+GL+N+ ++GD KF T
Sbjct: 302 REELKHTITLRYGETTDITRDMRLTFYNAGHILGSASGHLHIGDGLYNVVLSGDVKFEKT 361
Query: 374 RLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAV 433
L PAN KFPR ET + ESTYGG +D REEA + LI+VI++T RGG VLIP AV
Sbjct: 362 WLFNPANNKFPRAETFMTESTYGGRDDYSFTREEATQTLIDVINRTHDRGGSVLIPVFAV 421
Query: 434 GRAQEVMMVLEDYARIGAI-DAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPF 492
GR+QEVM+VLED R G I +YLDGMI EA AIH AYPEYL++ LRE I + NPF
Sbjct: 422 GRSQEVMIVLEDAMRNGRIPQMDVYLDGMIMEAPAIHAAYPEYLNKELREAIMVKKENPF 481
Query: 493 LSEIFHPV 500
LS IF V
Sbjct: 482 LSPIFKKV 489
>sp|Q57626|Y162_METJA HYPOTHETICAL PROTEIN MJ0162 >gi|2129218|pir||C64320 probable
membrane protein YLR277c homolog - Methanococcus
jannaschii >gi|1590919|gb|AAB98146.1| (U67473) putative
mRNA 3'-end processing factor 3 [Methanococcus
jannaschii]
Length = 421
Score = 267 bits (676), Expect = 2e-70
Identities = 158/451 (35%), Positives = 259/451 (57%), Gaps = 48/451 (10%)
Query: 195 GGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAIII 254
GG +++G S + V+T + VL+D G++ D E V + +DA+I+
Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMSP-------------DTGEIPKV-DDKAVDAVIV 53
Query: 255 THAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIK 314
+HAHLDH G +P+ +++ IY T PT DLM + +D + + ++ Y+ DI+
Sbjct: 54 SHAHLDHCGAIPF-YKFK----KIYCTHPTADLMFITWRDTLNLTKA------YKEEDIQ 102
Query: 315 EVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTR 374
+++ L+Y E R I+ +I+ +NAGHILGSA ++L + I TGD +R
Sbjct: 103 HAMENIECLNYYEERQITENIKFKFYNAGHILGSASIYLEVDG--KKILYTGDINEGVSR 160
Query: 375 LLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVG 434
L PA+ ++ L++ESTYG DI+ R+ E++LIE I +T++ GGKV+IP A+G
Sbjct: 161 TLLPADTDIDEIDVLIIESTYGSPLDIKPARKTLERQLIEEISETIENGGKVIIPVFAIG 220
Query: 435 RAQEVMMVLEDYARIGAI-DAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFL 493
RAQE+++++ +Y R G + D PIY DG + ATA++ +Y +L+ +++ + + NPF
Sbjct: 221 RAQEILLIINNYIRSGKLRDVPIYTDGSLIHATAVYMSYINWLNPKIKNMV-ENRINPF- 278
Query: 494 SEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAE 553
EI K + ++ + EP II+++SGM+ GGP ++Y K L DP+N +I YQAE
Sbjct: 279 GEI------KKADESLVFNKEPCIIVSTSGMVQGGPVLKYLK-LLKDPKNKLILTGYQAE 331
Query: 554 GTLGRQVQSGVREIPMVGEE--GRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRP 611
GTLGR+++ G +EI + R +V+K+ FS H D L+ Y+ K+ P+P
Sbjct: 332 GTLGRELEEGAKEIQPFKNKIPIRGKVVKIE--------FSAHGDYNSLVRYIKKI-PKP 382
Query: 612 ERVITVHGEPQKCLDLATSIHRKFGLSTRAP 642
E+ I +HGE + L A +I + + T P
Sbjct: 383 EKAIVMHGERYQSLSFAMTIWKTLKIPTFVP 413
>gb|AAK40713.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus]
Length = 492
Score = 218 bits (549), Expect = 2e-55
Identities = 150/458 (32%), Positives = 243/458 (52%), Gaps = 44/458 (9%)
Query: 194 LGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAII 253
LGG REVGRSA+ V + +++D+GVN F D P F G + +
Sbjct: 78 LGGGREVGRSAIEVGNSDGSIILDYGVN----------FDEKDNPNFPLQEMPGKVKGFV 127
Query: 254 ITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDI 313
++HAHLDH G LP +++ + +Y T TR + + KDF+++ +G Y ++
Sbjct: 128 VSHAHLDHIGALP-IYQIGSLNTKVYGTVATRIITETMLKDFLKL---SGAKIPYEWVEV 183
Query: 314 KEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPT 373
++ + + + + YGE +I ++++L+NAGHI GS+I+ + G+ IA TGD T
Sbjct: 184 RKTMDNFMAIGYGEEVEID-SLKVSLYNAGHIPGSSIIKVSSEKGV--IAFTGDINLTET 240
Query: 374 RLLEPANAK-FPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMA 432
+L++PA + LVMESTYG N R++ E + + + ++ GG VL+PA +
Sbjct: 241 KLMKPAEIENIGDANVLVMESTYGKFNHPN--RKDVENDFYDKVMEVVESGGTVLVPAFS 298
Query: 433 VGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPF 492
+ R+QEV+ VL + P+Y DGM E T I + E+L+R + K+ Y+ F
Sbjct: 299 LARSQEVLSVLAERN----FPYPVYYDGMSREITEIMLGFKEFLNR---PDLLKKAYDNF 351
Query: 493 LSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQA 552
+ V ++R E +I+AS+GML GGP+V YFK+L+ + +N++ VSYQA
Sbjct: 352 -----NYVKGWEDRHRAW--KEKGVIVASAGMLKGGPAVYYFKKLSENSKNAVFLVSYQA 404
Query: 553 EGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPE 612
T GR++ + M + + ++K +E+ FS HA RR+L+ V V+ E
Sbjct: 405 INTPGRKL------LEMGKFDEYSGLLKARLEIF---DFSSHAGRRQLLEIVKSVKDL-E 454
Query: 613 RVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTIRL 650
+V+ VHG P LA I ++ G+ P N I L
Sbjct: 455 KVVLVHGSPDNESSLADLIKQEIGVEVITPENGQEISL 492
>pir||G64305 hypothetical protein YLR277c homolog - Methanococcus jannaschii
Length = 435
Score = 214 bits (540), Expect = 2e-54
Identities = 157/434 (36%), Positives = 229/434 (52%), Gaps = 49/434 (11%)
Query: 195 GGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLL---DA 251
G EVGRS + ++TD+S +L+D GV + E +Y + + + D
Sbjct: 14 GAALEVGRSCIEIKTDKSKILLDCGVKLGK--------------EIEYPILDNSIRDVDK 59
Query: 252 IIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPR 311
+ I+HAHLDHSG LP LF + D P+ TT ++ L+ +L KD ++I ++ + Y
Sbjct: 60 VFISHAHLDHSGALPVLFHRKM-DVPVITTELSKKLIKVLLKDMVKIAETENKKIPYNNH 118
Query: 312 DIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFI 371
D+KE I+HTI L+Y + + D L +AGHI GSA + L+ N I TGD K
Sbjct: 119 DVKEAIRHTIPLNYND-KKYYKDFSYELFSAGHIPGSASILLNYQNN-KTILYTGDVKLR 176
Query: 372 PTRLLEPANAKFPR--LETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIP 429
TRL + A+ + + ++ L++ESTYG N I R+ E IE I + L RGG LIP
Sbjct: 177 DTRLTKGADLSYTKDDIDILIIESTYG--NSIHPDRKAVELSFIEKIKEILFRGGVALIP 234
Query: 430 AMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGY 489
AV RAQE++++L DY IDAPIYLDGM E T + Y L+ Q+ K
Sbjct: 235 VFAVDRAQEILLILNDY----NIDAPIYLDGMAVEVTKLMLNYKHMLNE--SSQLEKALK 288
Query: 490 NPFLSEIFHPVANSKERQDIID--SNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIF 547
N + E S++R I+ S I++ ++GML GGP + Y K +P+N+++
Sbjct: 289 NVKIIE------KSEDRIKAIENLSKNGGIVVTTAGMLDGGPILYYLKLFMHNPKNALLL 342
Query: 548 VSYQAEGTLGRQ-VQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAK 606
YQ + GR +++G I G+ E IK N+EV + FS HA EL + K
Sbjct: 343 TGYQVRDSNGRHLIETGKIFI------GKDE-IKPNLEV-CMYNFSCHAGMDELHEIIKK 394
Query: 607 VRPRPERVITVHGE 620
V PE +I HGE
Sbjct: 395 V--NPELLIIQHGE 406
>sp|Q60355|Y047_METJA HYPOTHETICAL PROTEIN MJ0047 >gi|2826239|gb|AAB98027.1| (U67462)
putative mRNA 3'-end processing factor 1 [Methanococcus
jannaschii]
Length = 428
Score = 214 bits (540), Expect = 2e-54
Identities = 157/434 (36%), Positives = 229/434 (52%), Gaps = 49/434 (11%)
Query: 195 GGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLL---DA 251
G EVGRS + ++TD+S +L+D GV + E +Y + + + D
Sbjct: 7 GAALEVGRSCIEIKTDKSKILLDCGVKLGK--------------EIEYPILDNSIRDVDK 52
Query: 252 IIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPR 311
+ I+HAHLDHSG LP LF + D P+ TT ++ L+ +L KD ++I ++ + Y
Sbjct: 53 VFISHAHLDHSGALPVLFHRKM-DVPVITTELSKKLIKVLLKDMVKIAETENKKIPYNNH 111
Query: 312 DIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFI 371
D+KE I+HTI L+Y + + D L +AGHI GSA + L+ N I TGD K
Sbjct: 112 DVKEAIRHTIPLNYND-KKYYKDFSYELFSAGHIPGSASILLNYQNN-KTILYTGDVKLR 169
Query: 372 PTRLLEPANAKFPR--LETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIP 429
TRL + A+ + + ++ L++ESTYG N I R+ E IE I + L RGG LIP
Sbjct: 170 DTRLTKGADLSYTKDDIDILIIESTYG--NSIHPDRKAVELSFIEKIKEILFRGGVALIP 227
Query: 430 AMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGY 489
AV RAQE++++L DY IDAPIYLDGM E T + Y L+ Q+ K
Sbjct: 228 VFAVDRAQEILLILNDY----NIDAPIYLDGMAVEVTKLMLNYKHMLNE--SSQLEKALK 281
Query: 490 NPFLSEIFHPVANSKERQDIID--SNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIF 547
N + E S++R I+ S I++ ++GML GGP + Y K +P+N+++
Sbjct: 282 NVKIIE------KSEDRIKAIENLSKNGGIVVTTAGMLDGGPILYYLKLFMHNPKNALLL 335
Query: 548 VSYQAEGTLGRQ-VQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAK 606
YQ + GR +++G I G+ E IK N+EV + FS HA EL + K
Sbjct: 336 TGYQVRDSNGRHLIETGKIFI------GKDE-IKPNLEV-CMYNFSCHAGMDELHEIIKK 387
Query: 607 VRPRPERVITVHGE 620
V PE +I HGE
Sbjct: 388 V--NPELLIIQHGE 399
>gb|AAF56931.1| (AE003771) CG1972 gene product [Drosophila melanogaster]
Length = 597
Score = 213 bits (536), Expect = 6e-54
Identities = 141/465 (30%), Positives = 243/465 (51%), Gaps = 31/465 (6%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGL 248
I+IT LG ++VGRS LL+ +++D G+++ ND + P+F Y++ EG
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMG-YNDERRF------PDFSYIVPEGP 56
Query: 249 L----DAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNG 303
+ D +II+H HLDH G LPY+ + GPIY T PT+ + +L +D ++ + G
Sbjct: 57 ITSHIDCVIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKG 116
Query: 304 QDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIA 363
+ + + IK+ +K I + + + D+ + + AGH+LG+A+ + +G+ ++
Sbjct: 117 ESNFFTTQMIKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGS--QSVV 174
Query: 364 ITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRG 423
TGD+ P R L A R + L+ ESTY A I+ + E+ ++ +H+ + +G
Sbjct: 175 YTGDYNMTPDRHLGAAWIDKCRPDLLISESTY--ATTIRDSKRCRERDFLKKVHECVAKG 232
Query: 424 GKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLD-GMIWEATAIHTAYPEYLSRRLRE 482
GKVLIP A+GRAQE+ ++LE Y + PIY G+ +A + + + ++++R+
Sbjct: 233 GKVLIPVFALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRK 292
Query: 483 QIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPR 542
N F + P + ID+ ++ A+ GML G S++ FK+ AP+
Sbjct: 293 TFVHR--NMFDFKHIKPFDKA-----YIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNEN 345
Query: 543 NSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMN 602
N +I Y +GT+G ++ G +++ E +V++V M V + FS HAD + +M
Sbjct: 346 NMVIMPGYCVQGTVGNKILGGAKKV----EFENRQVVEVKMAVEYM-SFSAHADAKGIMQ 400
Query: 603 YVAKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDT 647
+ P+ V+ VHGE K L + I +F L T P N +T
Sbjct: 401 LIQNCEPK--NVMLVHGEAGKMKFLRSKIKDEFNLETYMPANGET 443
>pir||T20694 hypothetical protein F10B5.8 - Caenorhabditis elegans
>gi|5824432|emb|CAB54223.1| (Z48334) cDNA EST yk559f4.5
comes from this gene [Caenorhabditis elegans]
Length = 474
Score = 210 bits (528), Expect = 5e-53
Identities = 138/467 (29%), Positives = 241/467 (51%), Gaps = 33/467 (7%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEG- 247
I+I LG ++VGRS +L+ ++VD G+++ +D + FP +F Y+ G
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDD--RRFP-----DFSYIGGGGR 60
Query: 248 ---LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNG 303
LD +II+H HLDH G LP++ +DGPIY T PT+ + +L +D+ ++Q G
Sbjct: 61 LTDYLDCVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKG 120
Query: 304 QDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIA 363
+ + DIK +K + E+ + ++ + AGH+LG+A+ + +G+ H++
Sbjct: 121 ETNFFTSDDIKNCMKKVVGCALHEIIHVDNELSIRAFYAGHVLGAAMFEIRLGD--HSVL 178
Query: 364 ITGDFKFIPTRLLEPANA-KFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKR 422
TGD+ P R L A R L+ ESTY A I+ + E+ + +H+ + +
Sbjct: 179 YTGDYNMTPDRHLGAARVLPGVRPTVLISESTY--ATTIRDSKRARERDFLRKVHECVMK 236
Query: 423 GGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYL-DGMIWEATAIHTAYPEYLSRRLR 481
GGKV+IP A+GRAQE+ ++LE Y A++ PIY G+ A + + + + ++
Sbjct: 237 GGKVIIPVFALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRLFISWTNENIK 296
Query: 482 EQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDP 541
+ + N F + P+ E D P ++ ++ GML GG S++ FK+ DP
Sbjct: 297 KTFVER--NMFEFKHIKPMEKGCE-----DQPGPQVLFSTPGMLHGGQSLKVFKKWCSDP 349
Query: 542 RNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELM 601
N II Y GT+G +V +G ++I + + + I++ +E + FS HAD + +M
Sbjct: 350 LNMIIMPGYCVAGTVGARVINGEKKIEI---DQKMHEIRLGVEYMS---FSAHADAKGIM 403
Query: 602 NYVAKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTI 648
+ + P+ V+ VHGE K L + +++ + P N +T+
Sbjct: 404 QLIRQC--EPQHVMFVHGEASKMEFLKGKVEKEYKVPVHMPANGETV 448
>gi|11498143 mRNA 3'-end processing factor, putative [Archaeoglobus fulgidus]
>gi|7483886|pir||D69316 mRNA 3'-end processing factor
homolog - Archaeoglobus fulgidus
>gi|2650088|gb|AAB90702.1| (AE001067) mRNA 3'-end
processing factor, putative [Archaeoglobus fulgidus]
Length = 407
Score = 209 bits (526), Expect = 9e-53
Identities = 154/457 (33%), Positives = 237/457 (51%), Gaps = 62/457 (13%)
Query: 191 ITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLD 250
I LGG REVGRSA++V +++D+GV + D PEF GL
Sbjct: 4 INFLGGCREVGRSAVMVDG----IMIDYGVKPS------------DPPEFPL---NGLSP 44
Query: 251 -AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYR 309
A+I++H HLDH G+ P L Y D + TPP+ +L ++L +D ++I P +
Sbjct: 45 RAVILSHGHLDHIGVAPNLMYY---DPEVILTPPSHELSMILLRDSMKIMHP----PPFT 97
Query: 310 PRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFK 369
R++++ + ++Y E + D + NAGHI GSA +H+ G NI +GD +
Sbjct: 98 KRELRQFESNIREVEYEEPITVG-DYEVEFFNAGHIPGSASIHMR---GDVNILYSGDIR 153
Query: 370 FIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIP 429
TRLLE AN +P + L++ESTY G R+E E+ +E + TL GG +IP
Sbjct: 154 LEETRLLEGANTDYPETDILIVESTYFGTE--HPDRKELERAFVESVIDTLDMGGHAIIP 211
Query: 430 AMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGY 489
A AVGR QEV+M+LE Y Y+DGM E + +P+++ R +++ +
Sbjct: 212 AFAVGRTQEVLMILERYG------ITPYVDGMGKEVAQVIQRHPDFI--RSPKELKRAVR 263
Query: 490 NPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVS 549
N PV ++R+ +++ EP+ ++ ++GML GGP++ Y +L D ++ I+
Sbjct: 264 NAI------PV-EWRQRERVLE--EPSAVVTTAGMLNGGPAMFYISRLYNDEKSKILLTG 314
Query: 550 YQAEGTLG-RQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVR 608
YQ EGT G +++G+ + T V+K+ M V D FS HAD R+L YV +V
Sbjct: 315 YQVEGTNGDMALKTGMLNL-------GTRVVKLKMGVEQYD-FSAHADDRQLKEYVKRVV 366
Query: 609 PR-PERVITVHGEPQKCLDLATSIHRKFGLSTRAPNN 644
R E V T+HGE + A I G+ AP N
Sbjct: 367 DRGAEVVFTIHGEETEA--FAEWIKDNIGVEAYAPKN 401
>pir||T37848 probable cleavage and polyadenylation specifity factor - fission
yeast (Schizosaccharomyces pombe)
>gi|2408029|emb|CAB16227.1| (Z99162) putative cleavage
and polyadenylation specifity factor
[Schizosaccharomyces pombe]
Length = 775
Score = 204 bits (513), Expect = 3e-51
Identities = 140/450 (31%), Positives = 226/450 (50%), Gaps = 29/450 (6%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGL 248
+ LG EVGRS ++Q V++D GV+ A A P FD + V
Sbjct: 37 LEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTG--LSALPFFDEFDLSTV----- 89
Query: 249 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLY 308
D ++I+H HLDH LPY+ + F G ++ T PT+ + L D++++ +D LY
Sbjct: 90 -DVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQLY 148
Query: 309 RPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDF 368
+D+ +DY ++ I+ T ++AGH+LG+ + + + NI TGD+
Sbjct: 149 DEKDLLAAFDRIEAVDYHSTIEVE-GIKFTPYHAGHVLGACMYFVEMAGV--NILFTGDY 205
Query: 369 KFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLI 428
R L A R + L+ ESTYG A+ PR E E RL+ +IH T++ GG+VL+
Sbjct: 206 SREEDRHLHVAEVPPKRPDVLITESTYGTAS--HQPRLEKEARLLNIIHSTIRNGGRVLM 263
Query: 429 PAMAVGRAQEVMMVLEDY--ARIGAIDAPI-YLDGMIWEATAIHTAYPEYLSRRLREQIF 485
P A+GRAQE++++L++Y + PI Y + + AI Y ++ +R +IF
Sbjct: 264 PVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIR-KIF 322
Query: 486 KEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSI 545
E NPF+ + N ++ DI P++I+AS GML G S ++ APDPRN++
Sbjct: 323 AE-RNPFIFRFVKSLRNLEKFDDI----GPSVILASPGMLQNGVSRTLLERWAPDPRNTL 377
Query: 546 IFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVA 605
+ Y EGT+ +Q+ + I +V G + I M V + F+ H D + ++
Sbjct: 378 LLTGYSVEGTMAKQITN--EPIEIVSLSG--QKIPRRMAVEEL-SFAAHVDYLQNSEFID 432
Query: 606 KVRPRPERVITVHGEPQKCLDLATSIHRKF 635
V + +I VHGE L +++ KF
Sbjct: 433 LV--NADHIILVHGEQTNMGRLKSALASKF 460
>pir||C72774 probable cleavage and polyadenylation specificity factor subunit
APE0181 - Aeropyrum pernix (strain K1)
>gi|5103572|dbj|BAA79093.1| (AP000058) 420aa long
hypothetical cleavage and polyadenylation specificity
factor subunit [Aeropyrum pernix]
Length = 420
Score = 203 bits (511), Expect = 5e-51
Identities = 150/465 (32%), Positives = 235/465 (50%), Gaps = 51/465 (10%)
Query: 190 RITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLL 249
RI LG REVGR+A+LV++ +L+D+GVN F D P F ++ L
Sbjct: 3 RIRILGSGREVGRAAILVESGGRGLLLDYGVN----------FDENDRPVFPGDVRPRDL 52
Query: 250 DAIIITHAHLDHSGMLPYLFRYNLFDGP-IYTTPPTRDLMVLLQKDFIEIQQSNGQDPLY 308
D +++TH+HLDH G PYL+ + GP ++ T T + LL D I++ NG Y
Sbjct: 53 DGLVLTHSHLDHIGAAPYLY---VSQGPKVFGTRVTLHVSRLLLYDMIKL---NGAYLPY 106
Query: 309 RPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDF 368
R +++++ +DYG + T ++ GHI GS V + + I T D
Sbjct: 107 DERSVEDMLGTAEYIDYGREYEAGRFAFKTFYS-GHIPGSTAVLVEVDG--RRILYTSDV 163
Query: 369 KFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLI 428
I T+L+ PA + + + +++ESTYG ++ PR +E+R + + +GG VL+
Sbjct: 164 NVIETKLVGPARLEGAKADVVIVESTYGDSD--HPPRSVSEERFYNAVMDVVSQGGTVLV 221
Query: 429 PAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEG 488
PA +V R QE+ M+L + + P++LDGMI + I+ A P + I G
Sbjct: 222 PAFSVSRGQEIAMILAERG----FEYPVWLDGMIRQVAEIYAANPRF--------ILNPG 269
Query: 489 YNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFV 548
+ F V+ ++R+ +P +IIAS+GML GGPS+ Y +++A + +N I V
Sbjct: 270 LLMKVMSEFRIVSGWQDRRRAF--KKPGVIIASAGMLKGGPSLYYARKMATNKKNGIFMV 327
Query: 549 SYQAEGTLGRQVQSGVREIPMVGEEG--RTEVIKVNMEVHTIDGFSGHADRRELMNYVAK 606
SYQA GT GR M+ EEG E I V V D FS H D+ ++ +
Sbjct: 328 SYQAPGTPGR----------MILEEGVFGEERIPVLARVEWFD-FSSHIDQSGIIKLLRS 376
Query: 607 VRPRPERVITVHGEPQKCLDLATSIHRKFGL-STRAPNNLDTIRL 650
V E+V+ VHG+P+ L T I + G+ P N+D + +
Sbjct: 377 VN-GVEKVVLVHGDPKAQEALKTRIREELGIREVETPGNMDVLEV 420
>emb|CAA65151.1| (X95906) Cleavage and Polyadenylation Specifity Factor protein [Bos
taurus]
Length = 684
Score = 202 bits (509), Expect = 9e-51
Identities = 140/479 (29%), Positives = 241/479 (50%), Gaps = 37/479 (7%)
Query: 182 PEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQ 241
P +S + I LG +EVGRS ++++ +++D G++ + A P+ D
Sbjct: 5 PAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGL--EGMDALPYID----- 57
Query: 242 YVLKEGLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQS 301
++ +D ++I+H HLDH G LP+ + F G + T T+ + L D++++
Sbjct: 58 -LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI 116
Query: 302 NGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHN 361
+ D LY D++E + T+++ EV++++ I+ ++AGH+LG+A+ + I
Sbjct: 117 SADDMLYTETDLEESMDKIETINFHEVKEVA-GIKFWCYHAGHVLGAAMFMIEIAG--VK 173
Query: 362 IAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLK 421
+ TGDF R L A + + L++ESTYG I REE E R +H +
Sbjct: 174 LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG--THIHEKREEREARFCNTVHDIVN 231
Query: 422 RGGKVLIPAMAVGRAQEVMMVLEDY--ARIGAIDAPI-YLDGMIWEATAIHTAYPEYLSR 478
RGG+ LIP A+GRAQE++++L++Y D PI Y + + A++ Y ++
Sbjct: 232 RGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMND 291
Query: 479 RLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 538
++R+QI NPF +F ++N K D D P++++AS GM+ G S E F+
Sbjct: 292 KIRKQI--NINNPF---VFKHISNLKS-MDHFDDIGPSVVMASPGMMQSGLSRELFESWC 345
Query: 539 PDPRNSIIFVSYQAEGTLGRQVQSGVREI-PMVGEEGRTEVIKVNMEVHTIDGFSGHADR 597
D RN +I Y EGTL + + S EI M G++ + + M V I FS H D
Sbjct: 346 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQK-----LPLKMSVDYI-SFSAHTDY 399
Query: 598 RELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKF------GLSTRAPNNLDTIRL 650
++ ++ + +P VI VHGE + L ++ R++ + P N + + L
Sbjct: 400 QQTSEFIRAL--KPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|7706427 cleavage and polyadenylation specific factor 3, 73kD subunit;
cleavage and polyadenylation specificity factor73 kDa
subunit; cleavage and polyadenylation specificity factor
73 kDa subunit; cleavage and polyadenylation specificity
factor 3, 73kD subunit>
>gi|6002955|gb|AAF00224.1|AF171877_1 (AF171877) cleavage
and polyadenylation specificity factor 73 kDa subunit
[Homo sapiens]
Length = 684
Score = 202 bits (509), Expect = 9e-51
Identities = 140/479 (29%), Positives = 241/479 (50%), Gaps = 37/479 (7%)
Query: 182 PEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQ 241
P +S + I LG +EVGRS ++++ +++D G++ + A P+ D
Sbjct: 5 PAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGL--EGMDALPYID----- 57
Query: 242 YVLKEGLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQS 301
++ +D ++I+H HLDH G LP+ + F G + T T+ + L D++++
Sbjct: 58 -LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI 116
Query: 302 NGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHN 361
+ D LY D++E + T+++ EV++++ I+ ++AGH+LG+A+ + I
Sbjct: 117 SADDMLYTETDLEESMDKIETINFHEVKEVA-GIKFWCYHAGHVLGAAMFMIEIAG--VK 173
Query: 362 IAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLK 421
+ TGDF R L A + + L++ESTYG I REE E R +H +
Sbjct: 174 LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG--THIHEKREEREARFCNTVHDIVN 231
Query: 422 RGGKVLIPAMAVGRAQEVMMVLEDY--ARIGAIDAPI-YLDGMIWEATAIHTAYPEYLSR 478
RGG+ LIP A+GRAQE++++L++Y D PI Y + + A++ Y ++
Sbjct: 232 RGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMND 291
Query: 479 RLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 538
++R+QI NPF +F ++N K D D P++++AS GM+ G S E F+
Sbjct: 292 KIRKQI--NINNPF---VFKHISNLKS-MDHFDDIGPSVVMASPGMMQSGLSRELFESWC 345
Query: 539 PDPRNSIIFVSYQAEGTLGRQVQSGVREI-PMVGEEGRTEVIKVNMEVHTIDGFSGHADR 597
D RN +I Y EGTL + + S EI M G++ + + M V I FS H D
Sbjct: 346 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQK-----LPLKMSVDYI-SFSAHTDY 399
Query: 598 RELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKF------GLSTRAPNNLDTIRL 650
++ ++ + +P VI VHGE + L ++ R++ + P N + + L
Sbjct: 400 QQTSEFIRAL--KPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gi|9055194 cleavage and polyadenylation specificity factor 3; 73 kDa [Mus
musculus] >gi|6625904|gb|AAF19420.1|AF203969_1
(AF203969) cleavage and polyadenylation specificity
factor 73 kDa subunit [Mus musculus]
Length = 684
Score = 201 bits (507), Expect = 2e-50
Identities = 140/479 (29%), Positives = 241/479 (50%), Gaps = 37/479 (7%)
Query: 182 PEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQ 241
P +S + I LG +EVGRS ++++ +++D G++ + A P+ D
Sbjct: 5 PAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGL--EGMDALPYID----- 57
Query: 242 YVLKEGLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQS 301
++ +D ++I+H HLDH G LP+ + F G + T T+ + L D++++
Sbjct: 58 -LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI 116
Query: 302 NGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHN 361
+ D LY D++E + T+++ EV++++ I+ ++AGH+LG+A+ + I
Sbjct: 117 SADDMLYTETDLEESMDKIETINFHEVKEVA-GIKFWCYHAGHVLGAAMFMIEIAG--VK 173
Query: 362 IAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLK 421
+ TGDF R L A + + L++ESTYG I REE E R +H +
Sbjct: 174 LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG--THIHEKREEREARFWHTVHDIVN 231
Query: 422 RGGKVLIPAMAVGRAQEVMMVLEDY--ARIGAIDAPI-YLDGMIWEATAIHTAYPEYLSR 478
RGG+ LIP A+GRAQE++++L++Y D PI Y + + A++ Y ++
Sbjct: 232 RGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMND 291
Query: 479 RLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 538
++R+QI NPF +F ++N K D D P++++AS GM+ G S E F+
Sbjct: 292 KIRKQI--NINNPF---VFKHISNLKS-MDHFDDIGPSVVMASPGMIQNGLSRELFESWC 345
Query: 539 PDPRNSIIFVSYQAEGTLGRQVQSGVREI-PMVGEEGRTEVIKVNMEVHTIDGFSGHADR 597
D RN +I Y EGTL + + S EI M G++ + + M V I FS H D
Sbjct: 346 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQK-----LPLKMSVDYI-SFSAHTDY 399
Query: 598 RELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKF------GLSTRAPNNLDTIRL 650
++ ++ + +P VI VHGE + L ++ R++ + P N + + L
Sbjct: 400 QQTSEFIRAL--KPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 456
>gb|AAD12712.1| (AC006069) putative cleavage and polyadenylation specifity factor
[Arabidopsis thaliana]
Length = 837
Score = 201 bits (506), Expect = 2e-50
Identities = 135/462 (29%), Positives = 230/462 (49%), Gaps = 32/462 (6%)
Query: 194 LGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLD--- 250
LG +E+G+S ++V + ++ D G+++ D + +P+F + K G D
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGC--DDHNRYPNFSL-----ISKSGDFDNAI 60
Query: 251 -AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNGQDPLY 308
IIITH H+DH G LPY ++GPIY + PT+ L L+ +D+ + G++ L+
Sbjct: 61 SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120
Query: 309 RPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDF 368
I +K I +D + + D+++ + AGH+LG+ +V+ +G+ I TGD+
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAA--IVYTGDY 178
Query: 369 KFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLI 428
R L A +L+ L+ ESTY A I+ + E+ ++ +H+ + GGK LI
Sbjct: 179 NMTTDRHLGAAKIDRLQLDLLISESTY--ATTIRGSKYPREREFLQAVHKCVAGGGKALI 236
Query: 429 PAMAVGRAQEVMMVLEDYARIGAIDAPIYL-DGMIWEATAIHTAYPEYLSRRLREQIFKE 487
P+ A+GRAQE+ M+L+DY I PIY G+ +A + + S+ ++E+
Sbjct: 237 PSFALGRAQELCMLLDDYWERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEK--HN 294
Query: 488 GYNPFLSEIFHPVANSKE-RQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSII 546
+NPF N K+ + +I + P ++ A+ GML G S+E FK AP P N +
Sbjct: 295 THNPF------DFKNVKDFDRSLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVA 348
Query: 547 FVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAK 606
Y GT+G ++ +G P + + V +VH + FS H D + +M+
Sbjct: 349 LPGYSVAGTVGHKLMAGK---PTTVDLYNGTKVDVRCKVHQV-AFSPHTDAKGIMDLTKF 404
Query: 607 VRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDTI 648
+ P+ V+ VHGE + L I + + P N +T+
Sbjct: 405 LSPK--NVVLVHGEKPSMMILKEKITSELDIPCFVPANGETV 444
>gb|AAF55578.1| (AE003723) CG7698 gene product [Drosophila melanogaster]
Length = 705
Score = 195 bits (491), Expect = 1e-48
Identities = 133/459 (28%), Positives = 231/459 (49%), Gaps = 29/459 (6%)
Query: 180 RKPEYKSRWIRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPE 239
R P+ +S ++I LG +EVGRS ++++ +++D G+ + DA
Sbjct: 9 RMPDEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--------HPGLSGMDALP 60
Query: 240 FQYVLKEGLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ 299
+ +++ +D + I+H HLDH G LP+ F G + T T+ + + D+I+I
Sbjct: 61 YVDLIEADEIDLLFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKIS 120
Query: 300 QSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGL 359
+ + LY D++ ++ T+++ E RD+ +R + AGH+LG+A+ + I
Sbjct: 121 NISTEQMLYTEADLEASMEKIETINFHEERDVM-GVRFCAYIAGHVLGAAMFMIEIAG-- 177
Query: 360 HNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQT 419
I TGDF R L A + + L+ ESTYG I RE+ E R ++ +
Sbjct: 178 IKILYTGDFSRQEDRHLMAAEVPPMKPDVLITESTYG--THIHEKREDRENRFTSLVQKI 235
Query: 420 LKRGGKVLIPAMAVGRAQEVMMVLEDY--ARIGAIDAPI-YLDGMIWEATAIHTAYPEYL 476
+++GG+ LIP A+GRAQE++++L+++ + PI Y + + A++ Y +
Sbjct: 236 VQQGGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAM 295
Query: 477 SRRLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQ 536
+ R+R QI NPF +F ++N K D + P +I+AS GM+ G S E F+
Sbjct: 296 NDRIRRQIAVN--NPF---VFRHISNLK-GIDHFEDIGPCVIMASPGMMQSGLSRELFES 349
Query: 537 LAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHAD 596
DP+N +I Y EGTL + V S EI + + + +NM V I FS H D
Sbjct: 350 WCTDPKNGVIIAGYCVEGTLAKAVLSEPEEITTLS----GQKLPLNMSVDYI-SFSAHTD 404
Query: 597 RRELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKF 635
++ ++ + +P V+ VHGE + L ++ R++
Sbjct: 405 YQQTSEFIRLL--KPTHVVLVHGEQNEMSRLKLALQREY 441
>dbj|BAA33615.1| (AB012956) unknown [Vibrio cholerae]
Length = 446
Score = 192 bits (482), Expect = 1e-47
Identities = 142/437 (32%), Positives = 221/437 (50%), Gaps = 35/437 (8%)
Query: 195 GGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAIII 254
GG V S ++ D +L+D G+ A P A EF G +DA+I+
Sbjct: 15 GGKASVTGSCHELRADGQALLIDCGLFQGADERPL-------AVEFAL----GHVDALIL 63
Query: 255 THAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIK 314
THAH+DH G LP+L F PIY T T +L+ L+ +D +++Q G P R +
Sbjct: 64 THAHIDHIGRLPWLLAAG-FKQPIYCTAATAELVPLMLEDGLKLQL--GMSPKQSERVLT 120
Query: 315 EVIKHTITLDYGEVRDISP----DIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
EV + DY + + P + + AGHILGSA V + NG + +GD
Sbjct: 121 EVRRLLRVQDYQKWFAVQPKCADSLWVRFQPAGHILGSAYVEIRRPNG-EVVVFSGDLGP 179
Query: 371 IPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPA 430
T LL P R + L +E+TYG + + +RL +I ++L GG +LIPA
Sbjct: 180 SHTPLL-PDPQSPERADYLFIETTYGDKQHEDV--QSRGQRLRAMIERSLTDGGAILIPA 236
Query: 431 MAVGRAQEVMMVLEDYARIGAIDA--PIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKE 487
+VGR QE++ +E IDA PI LD M T + + + R + ++
Sbjct: 237 FSVGRTQELLFDIEQLIFSQQIDANLPIILDSPMAQRVTRSYRRFKQLWGREAKARLQMH 296
Query: 488 GYNPFLSEIFHPVANSKERQDIID----SNEPAIIIASSGMLVGGPSVEYFKQLAPDPRN 543
+ P E V + + + +++ + E AI++A+SGM GG ++Y K L PD R
Sbjct: 297 RH-PLAFEQCITVEDHRTHERLVNRLASTGEAAIVVAASGMCQGGRIMDYLKALLPDKRT 355
Query: 544 SIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNY 603
+I +QAEGTLGR +QSG + + G E ++VN +HT+ G+S HAD+ +L+ +
Sbjct: 356 DLILAGFQAEGTLGRSIQSGQPSVWIEGTE-----VEVNAHIHTMSGYSAHADKADLLRF 410
Query: 604 VAKVRPRPERVITVHGE 620
+A + +P++V +HGE
Sbjct: 411 IAGIPEKPKQVHLIHGE 427
>pir||F82345 conserved hypothetical protein VC0264 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654673|gb|AAF93439.1|
(AE004114) conserved hypothetical protein [Vibrio
cholerae]
Length = 455
Score = 190 bits (478), Expect = 4e-47
Identities = 141/437 (32%), Positives = 221/437 (50%), Gaps = 35/437 (8%)
Query: 195 GGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAIII 254
GG V S ++ D +L+D G+ A P A EF G +DA+I+
Sbjct: 24 GGKASVTGSCHELRADGQALLIDCGLFQGADERPL-------AVEFAL----GHVDALIL 72
Query: 255 THAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIK 314
THAH+DH G LP+L L PIY+T T +L+ L+ +D +++Q G P R +
Sbjct: 73 THAHIDHIGRLPWLLAAGLKQ-PIYSTAATAELVPLMLEDGLKLQL--GMSPKQSERVLT 129
Query: 315 EVIKHTITLDYGEVRDISP----DIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
EV + DY + + P + + AGHILGSA V + NG + +GD
Sbjct: 130 EVRRLLRVQDYQKWFAVQPKRADSLWVRFQPAGHILGSAYVEIRRPNG-EVVVFSGDLGP 188
Query: 371 IPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPA 430
T LL P R + L +E+TYG + + +RL +I ++L GG +LIPA
Sbjct: 189 SHTPLL-PDPQSPERADYLFIETTYGDKQHEDV--QSRGQRLRAMIERSLTDGGAILIPA 245
Query: 431 MAVGRAQEVMMVLEDYARIGAIDA--PIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKE 487
+VGR QE++ +E IDA PI LD M T + + + R + ++
Sbjct: 246 FSVGRTQELLFDIEQLIFSQQIDANLPIILDSPMAQRVTRSYRRFKQLWGREAKARLQMH 305
Query: 488 GYNPFLSEIFHPVANSKERQDIID----SNEPAIIIASSGMLVGGPSVEYFKQLAPDPRN 543
+ P E V + + + +++ + E AI++A+SGM GG ++Y K L PD R
Sbjct: 306 RH-PLAFEQCITVEDHRTHERLVNRLASTGEAAIVVAASGMCQGGRIMDYLKALLPDKRT 364
Query: 544 SIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNY 603
+I +QAEGTLGR +QSG + + G E ++VN +HT+ G+S HAD+ +L+ +
Sbjct: 365 DLILAGFQAEGTLGRSIQSGQPSVWIEGTE-----VEVNAHIHTMSGYSAHADKADLLRF 419
Query: 604 VAKVRPRPERVITVHGE 620
+ + +P++V +HGE
Sbjct: 420 ITGIPEKPKQVHLIHGE 436
>gb|AAF27682.1|AC018908_21 (AC018908) putative cleavage and polyadenylation specificity
factor; 72745-70039 [Arabidopsis thaliana]
Length = 693
Score = 187 bits (470), Expect = 3e-46
Identities = 131/466 (28%), Positives = 233/466 (49%), Gaps = 32/466 (6%)
Query: 191 ITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLD 250
+T LG EVGRS + + +L D G++ A A P+FD + +D
Sbjct: 24 VTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSG--MAALPYFDE------IDPSSID 75
Query: 251 AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRP 310
++ITH H+DH+ LPY F+G ++ T T+ + LL D++++ + + +D L+
Sbjct: 76 VLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 135
Query: 311 RDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
+DI + + +D+ + +++ I+ + AGH+LG+A+ + I I TGD+
Sbjct: 136 QDINKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRILYTGDYSR 192
Query: 371 IPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPA 430
R L A + ++EST G + R EKR +VIH T+ +GG+VLIPA
Sbjct: 193 EEDRHLRAAELPQFSPDICIIESTSG--VQLHQSRHIREKRFTDVIHSTVAQGGRVLIPA 250
Query: 431 MAVGRAQEVMMVLEDY--ARIGAIDAPI-YLDGMIWEATAIHTAYPEYLSRRLREQIFKE 487
A+GRAQE++++L++Y + PI Y + + A++ Y ++ R+R Q
Sbjct: 251 FALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQFANS 310
Query: 488 GYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIF 547
NPF+ + P+ + + D+ P++++A+ G L G S + F D +N+ I
Sbjct: 311 --NPFVFKHISPLNSIDDFNDV----GPSVVMATPGGLQSGLSRQLFDSWCSDKKNACII 364
Query: 548 VSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKV 607
Y EGTL + + + +E+ ++ G T +NM+VH I FS HAD + ++ ++
Sbjct: 365 PGYMVEGTLAKTIINEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLKEL 419
Query: 608 RPRPERVITVHGEPQKCLDLATSIHRKF---GLSTRAPNNLDTIRL 650
P +I VHGE + + L + +F P N +++ +
Sbjct: 420 --MPPNIILVHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEM 463
>gi|6323307 Ysh1p [Saccharomyces cerevisiae] >gi|1077401|pir||S51413 probable
membrane protein YLR277c - yeast (Saccharomyces
cerevisiae) >gi|577190|gb|AAB67367.1| (U17245) Ysh1p:
subunit of polyadenylation factor I (PF I)
[Saccharomyces cerevisiae]
Length = 779
Score = 186 bits (468), Expect = 6e-46
Identities = 127/441 (28%), Positives = 218/441 (48%), Gaps = 36/441 (8%)
Query: 194 LGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAII 253
LGG EVGRS ++Q V++D G++ A + P +D + V D ++
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQG--LASLPFYDEFDLSKV------DILL 65
Query: 254 ITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEI--------QQSNGQD 305
I+H HLDH+ LPY+ + F G ++ T PT+ + L +DF+ + +
Sbjct: 66 ISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDE 125
Query: 306 PLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAIT 365
L+ D+ + T+DY D++ I+ T +AGH+LG+A+ + I GL + T
Sbjct: 126 GLFSDEDLVDSFDKIETVDYHSTVDVN-GIKFTAFHAGHVLGAAMFQIEIA-GLR-VLFT 182
Query: 366 GDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGK 425
GD+ R L A L++EST+G A PR E++L ++IH T+ RGG+
Sbjct: 183 GDYSREVDRHLNSAEVPPLSSNVLIVESTFGTAT--HEPRLNRERKLTQLIHSTVMRGGR 240
Query: 426 VLIPAMAVGRAQEVMMVLEDY-----ARIGAIDAPI-YLDGMIWEATAIHTAYPEYLSRR 479
VL+P A+GRAQE+M++L++Y +G PI Y + + ++ Y ++
Sbjct: 241 VLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDD 300
Query: 480 LREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAP 539
+R++ NPF+ + + N ++ QD P++++AS GML G S + ++ P
Sbjct: 301 IRKKFRDSQTNPFIFKNISYLRNLEDFQDF----GPSVMLASPGMLQSGLSRDLLERWCP 356
Query: 540 DPRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRE 599
+ +N ++ Y EGT+ + + IP + T I +V I F+ H D +E
Sbjct: 357 EDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEIT--IPRRCQVEEI-SFAAHVDFQE 413
Query: 600 LMNYVAKVRPRPERVITVHGE 620
+ ++ K+ +I VHGE
Sbjct: 414 NLEFIEKI--SAPNIILVHGE 432
>pir||C83195 hypothetical protein PA3614 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949771|gb|AAG07002.1|AE004781_10
(AE004781) hypothetical protein [Pseudomonas aeruginosa]
Length = 467
Score = 182 bits (456), Expect = 1e-44
Identities = 142/484 (29%), Positives = 226/484 (46%), Gaps = 44/484 (9%)
Query: 191 ITGLGGFREVGRSALLVQT-DESYVLVDFGVNVA---ALNDPYKAFPHFDAPEFQYVLKE 246
+T LG +EV S L++T D VL++ G+ A N FP FD
Sbjct: 4 LTFLGAAQEVTGSCYLLETLDGVKVLLECGMRQGRREADNGNRAPFP-FDPAS------- 55
Query: 247 GLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQ-- 304
+DA++I+HAHLDHSG+LP L F GPI+ T T +L+ L+ D IQ+ + +
Sbjct: 56 --IDAVVISHAHLDHSGLLPRLAAEG-FKGPIFATEATCELLELMLLDSAHIQEKDAEWE 112
Query: 305 ------------DPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVH 352
PLY D + +K + G ++ +R+T HNAGHILGS+IV
Sbjct: 113 NRWRNRIGKPSIKPLYTQADTERALKLRRPISLGSTVAVARGVRVTFHNAGHILGSSIVE 172
Query: 353 LHIGNGLH--NIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEK 410
+ + + + +GD + L+ A + R + +++ESTYG + + +
Sbjct: 173 VQFHDQVQPRRLVFSGDLGNTCSPLMR-APSPLSRADVVMLESTYGDRD--HRDSNDTLE 229
Query: 411 RLIEVIHQTLKRGGKVLIPAMAVGRAQEVMMVLEDYARIGAI-DAPIYLDG-MIWEATAI 468
L ++ Q + GG VLIP+ AVGR Q+++ L + + G + ++LD M A I
Sbjct: 230 ELAAILDQAHRDGGNVLIPSFAVGRTQDLLYYLGRFYQEGRLPQQAVFLDSPMAARANGI 289
Query: 469 HTAYPEYLSRRLREQIFKEGYNPFLS--EIFHPVANSKERQDIIDSNEPAIIIASSGMLV 526
+ + R RE I G + ++ E I A+IIA SGM
Sbjct: 290 YLRHSNEFDDRDREYIRGTGTTRLEEWLPVLRVTRSADESMAINRIKSGAVIIAGSGMCT 349
Query: 527 GGPSVEYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVH 586
GG V +FK P ++F +QA GTLGR + G + + + I V ++H
Sbjct: 350 GGRIVHHFKHNLWRPECHVVFPGFQARGTLGRNIVDGASAVRVFHQR-----IAVKAQIH 404
Query: 587 TIDGFSGHADRRELMNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLD 646
T+ GFS HA + +L+++V RP + +HGE +K L ++I + P +
Sbjct: 405 TLGGFSAHAGQSQLLDWVGHFAHRP-ALYLIHGEREKMEALQSAIRERLDWDAEIPEPGE 463
Query: 647 TIRL 650
I +
Sbjct: 464 RIEI 467
>gb|AAG20574.1| (AE005128) mRNA 3'-end processing factor homolog; Epf1
[Halobacterium sp. NRC-1]
Length = 410
Score = 181 bits (455), Expect = 2e-44
Identities = 150/455 (32%), Positives = 215/455 (46%), Gaps = 54/455 (11%)
Query: 194 LGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLDAII 253
LGG REVGRSALLV +L+DFG D P Q+ + DA++
Sbjct: 6 LGGAREVGRSALLVGES---LLLDFGTKA-------------DTPP-QFPVSTPTPDAVV 48
Query: 254 ITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDI 313
+H HLDH G +P L PI+ TPPT +L + L +D +++ P DI
Sbjct: 49 ASHGHLDHVGTIPALLS-GTHRPPIHWTPPTYELALTLARDTLKLHGGTYHCPFIE-NDI 106
Query: 314 KEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPT 373
K V + + T YG D + +T +NAGH+ GSA H+ + +G + TGDF
Sbjct: 107 KRVTEVSRTHGYGVPFDAA-GYEVTFYNAGHVPGSA--HVLVDDGDTRLLYTGDFHTTDQ 163
Query: 374 RLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAV 433
RL+ A+ P + +V ESTY R+ E R E + TL GG V++PA A+
Sbjct: 164 RLVSGTTAR-PEADVVVCESTYSDVTHDD--RDSVEARFAESVKTTLWEGGTVVVPAFAI 220
Query: 434 GRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFL 493
GR QE+++V + A D P Y+DGM T + YP ++ +
Sbjct: 221 GRTQELLLVCD------AHDIPCYVDGMGKRVTEMLLRYPGFVRDG-------DALRRAK 267
Query: 494 SEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAE 553
S +R+ I D + A I+ +SGML GGP++ Y ++ +P N I YQ
Sbjct: 268 SHARFVTGRDGQRKRIAD--QQAAIVTTSGMLSGGPAMTYIPEIRSNPVNKIAMTGYQVA 325
Query: 554 GTLGRQ-VQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPE 612
GT GR + SG EI +GR V+ V+ +V D FS HAD L ++ R
Sbjct: 326 GTPGRSLIDSGRAEI-----DGR--VLPVSAQVEQYD-FSAHADHAGLRAFLDDY--RDA 375
Query: 613 RVITVHGEPQKCLDLATSIHRKFGLSTRAPNNLDT 647
V+ HG+ C A ++ R G + RAP DT
Sbjct: 376 TVLVNHGD--DCAAFADAL-RDAGFTARAPERDDT 407
>pir||G75600 cleavage and polyadenylation specificity factor-related protein -
Deinococcus radiodurans (strain R1)
>gi|6460540|gb|AAF12246.1|AE001862_72 (AE001862)
cleavage and polyadenylation specificity factor-related
protein [Deinococcus radiodurans]
Length = 499
Score = 170 bits (427), Expect = 4e-41
Identities = 126/391 (32%), Positives = 202/391 (51%), Gaps = 34/391 (8%)
Query: 249 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLM--VLLQKDFIEIQ------- 299
LDA+++THAHLDH G LP L R + GP+Y TPPT L VLL ++++
Sbjct: 67 LDAVLLTHAHLDHVGRLPLLVRLG-YRGPVYCTPPTAALAETVLLDSARLQVEGYRQDLR 125
Query: 300 --QSNGQD-----PLYRPRDIKEVIKHTIT-LDYGEVRDISPDIRLTLHNAGHILGSAIV 351
+ G++ PLY D+ + L++GE ++ +R+T AGHILGSA +
Sbjct: 126 RARRQGREDEVPPPLYDEEDVHRTLALLRPQLEFGETVTVA-GVRVTPQRAGHILGSAYL 184
Query: 352 HLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKR 411
L G + ++GD + L P ++ +V+E+TY AN E
Sbjct: 185 LLEAPEG--RLLMSGDLGNRESGLQLDFTPP-PAVDAVVIETTY--ANRTHRGWVETRAE 239
Query: 412 LIEVIHQTLKRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDA-PIYLDG-MIWEATAIH 469
+ + ++++ GK+LIP+ A+ RAQ ++ L++ G + P++LD M AT +
Sbjct: 240 FAQALRDSVRQNGKILIPSFAIERAQTILHTLKEMMDSGEVPRIPVFLDSPMAARATNEY 299
Query: 470 TAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGP 529
Y + L +RE + + G +PF H V S E Q + + PAII+A +GM+ GG
Sbjct: 300 FEYGDELIPPVREAL-RNGEDPFRPSTLHTVTTSAESQRLNRYDGPAIIMAGNGMMTGGR 358
Query: 530 SVEYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTID 589
+ K P S+I VSYQ+ +LG ++ +G + ++GE+ + V +VHTI
Sbjct: 359 IQHHLKHHLWKPSTSLIIVSYQSPSSLGGRIVAGQGTVHLMGED-----VAVRAQVHTIG 413
Query: 590 GFSGHADRRELMNYVAKVRPRPERVITVHGE 620
GFS HAD+ +L+ ++ +P V VHGE
Sbjct: 414 GFSAHADQDDLLAFL-DTAGKP-HVWLVHGE 442
>emb|CAC11477.1| (AL445064) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 407
Score = 164 bits (412), Expect = 2e-39
Identities = 131/440 (29%), Positives = 218/440 (48%), Gaps = 56/440 (12%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEF--QYVLKE 246
+++ LGG EVGR + + ++ V+VD+GV PE QY L
Sbjct: 1 MKLKFLGGAEEVGRLGVKITDKDTSVIVDYGV----------------IPEKPPQYPLPP 44
Query: 247 GLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDP 306
+DA+ ITH+HLDH G +P Y+ + +Y T T + M L +D +++ G
Sbjct: 45 EPVDAMFITHSHLDHIGAVPVY--YHKGEPDLYATQMTLNTMKPLLRDALKVTNIEGYPA 102
Query: 307 LYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITG 366
++ DI + + Y E ++ ++ T + AGHI GS + G ++ +TG
Sbjct: 103 MFNEDDINSALANMRPARYFESIEVG-NMVATPYPAGHIPGSTMWKFEDGI---SVTVTG 158
Query: 367 DFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKV 426
D I T L+ AK + + L++ESTY G N RE+ KR + + + + GGKV
Sbjct: 159 DVNTIDTYLIN--GAKPIKTDVLIIESTYAGKN--HESREDVRKRFRDSVKEVIDSGGKV 214
Query: 427 LIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRLREQIFK 486
++PA AVGR QE++M + D + + +DGM + + I+ P +L K
Sbjct: 215 IMPAFAVGRTQELIMTIAD------MGYDVAVDGMGNDISTIYLNTPGFLRS-------K 261
Query: 487 EGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSII 546
+ + LS++ + R++ I S+ III++SGML GGP + Y ++L D +++I
Sbjct: 262 KEFLRALSKV-RIIKGRNMRENAIRSD---IIISTSGMLDGGPVLGYIQKLLEDEKSAIF 317
Query: 547 FVSYQAEGTLGRQ-VQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVA 605
YQ EGT GR +++G I V +K M V D S HA EL+N++
Sbjct: 318 VTGYQVEGTNGRSLLETGTLTIAGV-------TVKPKMRVEFFD-MSAHAGHDELVNFIK 369
Query: 606 KVRPRPERVITVHGEPQKCL 625
+ P+ +++ HG+ ++ L
Sbjct: 370 AIDPK--KIVLCHGDHRENL 387
>pir||T18488 hypothetical protein C0825c - malaria parasite (Plasmodium
falciparum) >gi|3758842|emb|CAB11127.1| (Z98551)
putative cleavage and polyadenylation specificity factor
protein [Plasmodium falciparum]
Length = 1017
Score = 156 bits (390), Expect = 8e-37
Identities = 121/431 (28%), Positives = 200/431 (46%), Gaps = 60/431 (13%)
Query: 248 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQ--- 304
++D +II+H H+DH G LP+ + G I + PT+ L +L D + +
Sbjct: 169 IIDCVIISHFHMDHIGALPFFTEILKYRGIILMSYPTKALSPILLLDSCRVTDMKWEKKN 228
Query: 305 -------------------------DPLYRPRD-IKEVIKHTITLDYGEVRDISPDIRLT 338
DP D I I I L E ++ D+ +T
Sbjct: 229 FERQIKMLNEKSDELLNYNINCIKKDPWNINEDNIYNCIDKVIGLQINETFELG-DMSIT 287
Query: 339 LHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGA 398
+ AGH+LG+ I + + N ++ TGD+ IP + L AN E + ESTY A
Sbjct: 288 PYYAGHVLGACIYKIEVRN--FSVIYTGDYNTIPDKHLGSANIPSLNPEIFISESTY--A 343
Query: 399 NDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYL 458
++ ++ +E L ++H+ + +GGKVLIP A+GRAQE+ ++L+DY + I PIY
Sbjct: 344 TYVRPTKKASELELCNLVHECVHKGGKVLIPVFAIGRAQELSILLDDYWKKMKIHYPIYF 403
Query: 459 D-GMIWEATAIHTAYPEYLSRRL----REQIFK-EGYNPFLSEIFHPVANSKERQDIIDS 512
G+ A + Y +++ +E +F +PFL+ + ++
Sbjct: 404 GCGLTENANKYYKIYSSWINSSCMSNEKENLFDFANISPFLN-------------NYLNE 450
Query: 513 NEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPMVGE 572
P ++ A+ GML G S++ FK A +P+N I+ Y +GT+G ++ G ++I + G
Sbjct: 451 KRPMVLFATPGMLHTGLSLKAFKAWAGNPQNLIVLPGYCVQGTVGHKLIMGEKQISLDG- 509
Query: 573 EGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERVITVHGEPQKCLDLATSIH 632
T IKV ++ + FS HAD + + V P+ VI VHGE LA I
Sbjct: 510 ---TTYIKVLCKIIYL-SFSAHADSNGIQQLIKHVSPK--NVIFVHGEKNGMQKLAKYIS 563
Query: 633 RKFGLSTRAPN 643
K +++ P+
Sbjct: 564 NKHMINSMCPS 574
>gb|AAB70268.1| (AF017269) 73 kDA subunit of cleavage and polyadenylation
specificity factor [Homo sapiens]
Length = 379
Score = 152 bits (381), Expect = 9e-36
Identities = 109/356 (30%), Positives = 180/356 (49%), Gaps = 29/356 (8%)
Query: 305 DPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAI 364
D LY D++E + T+++ EV++++ I+ ++AGH+LG+A+ + I +
Sbjct: 1 DMLYTETDLEESMDKIETINFHEVKEVA-GIKFWCYHAGHVLGAAMFMIEIAGV--KLLY 57
Query: 365 TGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGG 424
TGDF R L A + + L++ESTYG I REE E R +H + RGG
Sbjct: 58 TGDFSRQEDRHLMAAEIPNIKPDILIIESTYG--THIHEKREEREARFCNTVHDIVNRGG 115
Query: 425 KVLIPAMAVGRAQEVMMVLEDY--ARIGAIDAPI-YLDGMIWEATAIHTAYPEYLSRRLR 481
+ LIP A+GRAQE++++L++Y D PI Y + + A++ Y ++ ++R
Sbjct: 116 RGLIPVFALGRAQELLLILDEYWQNHPELXDXPIYYASSLAKKCMAVYQTYVNAMNDKIR 175
Query: 482 EQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDP 541
+QI NPF +F ++N K D D P++++AS GM+ G S E F+ D
Sbjct: 176 KQI--NINNPF---VFKHISNLKS-MDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDK 229
Query: 542 RNSIIFVSYQAEGTLGRQVQSGVREI-PMVGEEGRTEVIKVNMEVHTIDGFSGHADRREL 600
RN +I Y EGTL + + S EI M G++ + + M V I FS H D ++
Sbjct: 230 RNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQK-----LPLKMSVDYI-SFSAHTDYQQT 283
Query: 601 MNYVAKVRPRPERVITVHGEPQKCLDLATSIHRKF------GLSTRAPNNLDTIRL 650
++ + +P VI VHGE + L ++ R++ + P N + + L
Sbjct: 284 SEFIRAL--KPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTL 337
>dbj|BAB13943.1| (AK021939) unnamed protein product [Homo sapiens]
Length = 499
Score = 151 bits (377), Expect = 3e-35
Identities = 98/322 (30%), Positives = 175/322 (53%), Gaps = 19/322 (5%)
Query: 330 DISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAKFPRLETL 389
D+ ++ + + AGH+LG+A+ + +G+ ++ TGD+ P R L A R L
Sbjct: 42 DVDDELEIKAYYAGHVLGAAMFQIKVGS--ESVVYTGDYNMTPDRHLGAAWIDKCRPNLL 99
Query: 390 VMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEVMMVLEDYARI 449
+ ESTY A I+ + E+ ++ +H+T++RGGKVLIP A+GRAQE+ ++L+ +
Sbjct: 100 ITESTY--ATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLKTFWER 157
Query: 450 GAIDAPIYLD-GMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSKERQD 508
+ PIY G+ +A + + + ++++R+ + + E H A +
Sbjct: 158 MNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRN----MFEFKHIKAFDRA--- 210
Query: 509 IIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIP 568
D+ P ++ A+ GML G S++ F++ A + +N +I Y +GT+G ++ SG R++
Sbjct: 211 FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLE 270
Query: 569 MVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERVITVHGEPQKCLDLA 628
M EGR +V++V M+V + FS HAD + +M V + PE V+ VHGE +K L
Sbjct: 271 M---EGR-QVLEVKMQVEYM-SFSAHADAKGIMQLVGQA--EPESVLLVHGEAKKMEFLK 323
Query: 629 TSIHRKFGLSTRAPNNLDTIRL 650
I ++ ++ P N +T+ L
Sbjct: 324 QKIEQELRVNCYMPANGETVTL 345
>gb|AAD54657.1|AF090685_1 (AF090685) hypothetical protein [Vibrio cholerae]
Length = 339
Score = 149 bits (373), Expect = 8e-35
Identities = 105/329 (31%), Positives = 167/329 (49%), Gaps = 21/329 (6%)
Query: 303 GQDPLYRPRDIKEVIKHTITLDYGEVRDISP----DIRLTLHNAGHILGSAIVHLHIGNG 358
G P R + EV + DY + + P + + AGHILGSA V + NG
Sbjct: 2 GMSPKQSERVLTEVRRLLRVQDYQKWFAVQPKCADSLWVRFQPAGHILGSAYVEIRRPNG 61
Query: 359 LHNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQ 418
+ +GD T LL P R + L +E+TYG + + +RL +I +
Sbjct: 62 -EVVVFSGDLGPSHTPLL-PDPQSPERADYLFIETTYGDKQHEDV--QSRGQRLRAMIER 117
Query: 419 TLKRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDA--PIYLDG-MIWEATAIHTAYPEY 475
+L GG +LIPA +VGR QE++ +E IDA PI LD M T + + +
Sbjct: 118 SLTDGGAILIPAFSVGRTQELLFDIEQLIFSQQIDANLPIILDSPMAQRVTRSYRRFKQL 177
Query: 476 LSRRLREQIFKEGYNPFLSEIFHPVANSKERQDIID----SNEPAIIIASSGMLVGGPSV 531
R + ++ + P E V + + + +++ + E AI++A+SGM GG +
Sbjct: 178 WGREAKARLQMHRH-PLAFEQCITVEDHRTHERLVNRLASTGEAAIVVAASGMCQGGRIM 236
Query: 532 EYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGF 591
+Y K L PD R +I +QAEGTLGR +QSG + + G E ++VN +HT+ G+
Sbjct: 237 DYLKALLPDKRTDLILAGFQAEGTLGRSIQSGQPSVWIEGTE-----VEVNAHIHTMSGY 291
Query: 592 SGHADRRELMNYVAKVRPRPERVITVHGE 620
S HAD+ +L+ ++A + +P++V +HGE
Sbjct: 292 SAHADKADLLRFIAGIPEKPKQVHLIHGE 320
>dbj|BAB14541.1| (AK023356) unnamed protein product [Homo sapiens]
Length = 278
Score = 123 bits (307), Expect = 4e-27
Identities = 86/259 (33%), Positives = 129/259 (49%), Gaps = 46/259 (17%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEG- 247
IR+T LG ++VGRS +LV V++D G+++ +D + FP +F Y+ + G
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDD--RRFP-----DFSYITQNGR 56
Query: 248 ---LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNG 303
LD +II+H HLDH G LPY +DGPIY T PT+ + +L +D+ +I G
Sbjct: 57 LTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKG 116
Query: 304 QDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLH----IGNGL 359
+ + + IK+ +K + VHLH I G
Sbjct: 117 EANFFTSQMIKDCMKKVVA----------------------------VHLHQTVQIKVGS 148
Query: 360 HNIAITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQT 419
++ TGD+ P R L A R L+ ESTY A I+ + E+ ++ +H+T
Sbjct: 149 ESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTY--ATTIRDSKRCRERDFLKKVHET 206
Query: 420 LKRGGKVLIPAMAVGRAQE 438
++RGGKVLIP A+GRAQE
Sbjct: 207 VERGGKVLIPVFALGRAQE 225
>emb|CAB61133.1| (AL132951) predicted using Genefinder; preliminary prediction
[Caenorhabditis elegans]
Length = 1252
Score = 112 bits (278), Expect = 1e-23
Identities = 79/267 (29%), Positives = 134/267 (49%), Gaps = 23/267 (8%)
Query: 393 STYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEVMMVLEDY--ARIG 450
STYG R EKR +++H + RGG+ LIPA A+G AQE+M++L++Y +
Sbjct: 1 STYG--TQTHEDRAVREKRFTQMVHDIVTRGGRCLIPAFAIGPAQELMLILDEYWESHQE 58
Query: 451 AIDAPI-YLDGMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSKERQDI 509
D P+ Y + + +++ + ++ R+++QI + NPF IF V+ +
Sbjct: 59 LHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQKQIAVK--NPF---IFKHVSTLRGMDQF 113
Query: 510 IDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPM 569
D+ P +++A+ GML G S E F+ PD +N I Y EGTL + + S EI
Sbjct: 114 EDAG-PCVVLATPGMLQSGFSRELFESWCPDTKNGCIIAGYCVEGTLAKHILSEPEEIVS 172
Query: 570 VGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERVITVHGEPQKCLDLAT 629
+ E + + M+V + FS H D + N+V + +P ++ VHGE + L +
Sbjct: 173 LS----GEKLPMRMQVGYV-SFSAHTDYHQTSNFVKAL--KPPHLVLVHGELHEMSRLKS 225
Query: 630 SIHRKF-----GLSTRAPNNLDTIRLR 651
I R+F + P N + ++L+
Sbjct: 226 GIERQFQDDNIPIEVHNPRNTERLQLQ 252
>gb|AAF82809.1|AF283277_1 (AF283277) polyadenylation cleavage/specificity factor 100 kDa
subunit [Arabidopsis thaliana]
Length = 739
Score = 105 bits (259), Expect = 2e-21
Identities = 97/400 (24%), Positives = 166/400 (41%), Gaps = 30/400 (7%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGL 248
+++T L G + LV D L+D G N + P +
Sbjct: 5 VQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLPRVAST---------- 54
Query: 249 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKD-FIEIQQSNGQDPL 307
+DA++++H H G LPY + P+Y T P L +L D F+ +Q + D L
Sbjct: 55 IDAVLLSHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFD-L 113
Query: 308 YRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNAGHILGSAIVHLHIGNGLHNIAI 364
+ DI ++ I L Y + +S I + H AGH+LG +I I ++
Sbjct: 114 FTLDDIDSAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSI--WRITKDGEDVIY 171
Query: 365 TGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGG 424
D+ R L + +++ Y Q R++ +K ++ I + L+ GG
Sbjct: 172 AVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGG 231
Query: 425 KVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHT-AYPEYLSRRLREQ 483
VL+P GR E++++LE + PIY + +T + ++ E++S + +
Sbjct: 232 NVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKS 291
Query: 484 IFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRN 543
N FL + N + + P +++AS L G + E F + A DPRN
Sbjct: 292 FETSRDNAFLLRHVTLLINKTDLDNAPPG--PKVVLASMASLEAGFAREIFVEWANDPRN 349
Query: 544 SIIFVSYQAEGTLGRQVQSG----------VREIPMVGEE 573
++F GTL R +QS + +P+ GEE
Sbjct: 350 LVLFTETGQFGTLARMLQSAPPPKFVKVTMSKRVPLAGEE 389
>dbj|BAB10061.1| (AB005244) cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 739
Score = 104 bits (258), Expect = 2e-21
Identities = 98/401 (24%), Positives = 168/401 (41%), Gaps = 32/401 (7%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLK-EG 247
+++T L G + LV D L+D G N FD + + +
Sbjct: 5 VQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDL-----------FDTSLLEPLSRVAS 53
Query: 248 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKD-FIEIQQSNGQDP 306
+DA++++H H G LPY + P+Y T P L +L D F+ +Q + D
Sbjct: 54 TIDAVLLSHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFD- 112
Query: 307 LYRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNAGHILGSAIVHLHIGNGLHNIA 363
L+ DI ++ I L Y + +S I + H AGH+LG +I I ++
Sbjct: 113 LFTLDDIDSAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSI--WRITKDGEDVI 170
Query: 364 ITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRG 423
D+ R L + +++ Y Q R++ +K ++ I + L+ G
Sbjct: 171 YAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVG 230
Query: 424 GKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHT-AYPEYLSRRLRE 482
G VL+P GR E++++LE + PIY + +T + ++ E++S + +
Sbjct: 231 GNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISK 290
Query: 483 QIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPR 542
N FL + N + + P +++AS L G + E F + A DPR
Sbjct: 291 SFETSRDNAFLLRHVTLLINKTDLDNAPPG--PKVVLASMASLEAGFAREIFVEWANDPR 348
Query: 543 NSIIFVSYQAEGTLGRQVQSG----------VREIPMVGEE 573
N ++F GTL R +QS + +P+ GEE
Sbjct: 349 NLVLFTETGQFGTLARMLQSAPPPKFVKVTMSKRVPLAGEE 389
>sp|Q10568|CPSB_BOVIN CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD SUBUNIT
(CPSF 100 KD SUBUNIT) >gi|1363022|pir||A56351 cleavage
and polyadenylation specificity factor 100K chain -
bovine >gi|599683|emb|CAA53535.1| (X75931) Cleavage and
Polyadenylation specificity factor (CPSF) 100kD subunit
[Bos taurus]
Length = 782
Score = 85.0 bits (207), Expect = 2e-15
Identities = 86/378 (22%), Positives = 155/378 (40%), Gaps = 24/378 (6%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKE-G 247
I++T L G +E L+Q DE L+D G + HF + K
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCGWD-----------EHFSMDIIDSLRKHVH 53
Query: 248 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 307
+DA++++H H G LPY + IY T P + + D + + + L
Sbjct: 54 QIDAVLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTL 113
Query: 308 YRPRDIKEVIKHTITLDYGEVRDISPD---IRLTLHNAGHILGSAIVHLHIGNGLHNIAI 364
+ D+ L + ++ ++ + +T AGH++G I + + +G I
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKI-VKDGEEEIVY 172
Query: 365 TGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGG 424
DF L + + +L++ ++ A +Q R++ +++L+ + +TL+ G
Sbjct: 173 AVDFNHKREIHLNGCSLEMLSRPSLLITDSFN-ATYVQPRRKQRDEQLLTNVLETLRGDG 231
Query: 425 KVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIY----LDGMIWEATAIHTAYPEYLSRRL 480
VLI GR E+ +L+ R +Y L+ + + + E++S +L
Sbjct: 232 NVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKL 291
Query: 481 REQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPD 540
+ NPF F ++ D+ P +++AS L G S + F Q D
Sbjct: 292 MRCFEDKRNNPFQ---FRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQD 348
Query: 541 PRNSIIFVSYQAEGTLGR 558
P+NSII GTL R
Sbjct: 349 PKNSIILTYRTTPGTLAR 366
>gi|8393762 cleavage and polyadenylation specific factor 2, 100kD subunit;
cleavage and polyadenylation specificity factor [Mus
musculus] >gi|2331036|gb|AAB66830.1| (AF012822) cleavage
and polyadenylation specificity factor [Mus musculus]
Length = 782
Score = 83.9 bits (204), Expect = 5e-15
Identities = 85/378 (22%), Positives = 155/378 (40%), Gaps = 24/378 (6%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKE-G 247
I++T L G +E L+Q DE L+D G + HF + K
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCGWD-----------EHFSVDIIDSLRKHVH 53
Query: 248 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 307
+DA++++H H G LP+ + IY T P + + D + + + L
Sbjct: 54 QIDAVLLSHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTL 113
Query: 308 YRPRDIKEVIKHTITLDYGEVRDISPD---IRLTLHNAGHILGSAIVHLHIGNGLHNIAI 364
+ D+ L + ++ ++ + +T AGH++G I + + +G I
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKI-VKDGEEEIVY 172
Query: 365 TGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGG 424
DF L + + +L++ ++ A +Q R++ +++L+ + +TL+ G
Sbjct: 173 AVDFNHKREIHLNGCSLEMLSRPSLLITDSFN-ATYVQPRRKQRDEQLLTNVLETLRGDG 231
Query: 425 KVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIY----LDGMIWEATAIHTAYPEYLSRRL 480
VLI GR E+ +L+ R +Y L+ + + + E++S +L
Sbjct: 232 NVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKL 291
Query: 481 REQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPD 540
+ NPF F ++ D+ P +++AS L G S + F Q D
Sbjct: 292 MRCFEDKRNNPFQ---FRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQD 348
Query: 541 PRNSIIFVSYQAEGTLGR 558
P+NSII GTL R
Sbjct: 349 PKNSIILTYRTTPGTLAR 366
>gb|AAD33061.1|AF139986_1 (AF139986) cleavage and polyadenylation specificity factor 100 kDa
subunit [Xenopus laevis]
Length = 783
Score = 83.1 bits (202), Expect = 9e-15
Identities = 87/380 (22%), Positives = 154/380 (39%), Gaps = 28/380 (7%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNV---AALNDPYKAFPHFDAPEFQYVLK 245
I++T L G +E L+Q DE L+D G + + D K + H
Sbjct: 5 IKLTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVH----------- 53
Query: 246 EGLLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQD 305
+DA++++H H G LPY + IY T P + + D + + +
Sbjct: 54 --QVDAVLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDF 111
Query: 306 PLYRPRDIKEVIKHTITLDYGEVRDISPD---IRLTLHNAGHILGSAIVHLHIGNGLHNI 362
L+ D+ L Y ++ + + +T AGH++G I + + +G I
Sbjct: 112 SLFSLDDVDCAFDKIQQLKYNQIVHLKGKGHGLSITPLPAGHMIGGTIWKI-VKDGEEEI 170
Query: 363 AITGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKR 422
DF L + + +L++ ++ A +Q R++ +++L+ + +TL+
Sbjct: 171 VYAVDFNHKREIHLNGCSLEMINRPSLLITDSFN-ATYVQPRRKQRDEQLLTNVLETLRG 229
Query: 423 GGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIY----LDGMIWEATAIHTAYPEYLSR 478
G VLI GR E+ +L+ R +Y L+ + + + E++S
Sbjct: 230 DGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSD 289
Query: 479 RLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 538
+L + NPF F + D+ P +++AS L G S E F Q
Sbjct: 290 KLMRCFEDKRNNPFQ---FRHLTLCHGYSDLARVPSPKVVLASQPDLECGFSRELFIQWC 346
Query: 539 PDPRNSIIFVSYQAEGTLGR 558
DP+NS+I GTL R
Sbjct: 347 QDPKNSVILTYRTTPGTLAR 366
>gi|11423200 hypothetical protein FLJ20542 [Homo sapiens]
Length = 341
Score = 81.1 bits (197), Expect = 3e-14
Identities = 57/200 (28%), Positives = 104/200 (51%), Gaps = 15/200 (7%)
Query: 452 IDAPIYLD-GMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANSKERQDII 510
+ PIY G+ +A + + + ++++R+ + + E H A +
Sbjct: 2 LKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRN----MFEFKHIKAFDRA---FA 54
Query: 511 DSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPMV 570
D+ P ++ A+ GML G S++ F++ A + +N +I Y +GT+G ++ SG R++ M
Sbjct: 55 DNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEM- 113
Query: 571 GEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERVITVHGEPQKCLDLATS 630
EGR +V++V M+V + FS HAD + +M V + PE V+ VHGE +K L
Sbjct: 114 --EGR-QVLEVKMQVEYM-SFSAHADAKGIMQLVGQA--EPESVLLVHGEAKKMEFLKQK 167
Query: 631 IHRKFGLSTRAPNNLDTIRL 650
I ++ ++ P N +T+ L
Sbjct: 168 IEQELRVNCYMPANGETVTL 187
>gb|AAD46873.1|AF160933_1 (AF160933) BcDNA.LD14168 [Drosophila melanogaster]
>gi|7301732|gb|AAF56844.1| (AE003768) BcDNA:LD14168 gene
product [Drosophila melanogaster]
Length = 756
Score = 80.8 bits (196), Expect = 5e-14
Identities = 92/398 (23%), Positives = 165/398 (41%), Gaps = 39/398 (9%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKE-G 247
I++ + G + ++Q D+ +L+D G + FDA + + ++
Sbjct: 5 IKLHTISGAMDESPPCYILQIDDVRILLDCGWD-----------EKFDANFIKELKRQVH 53
Query: 248 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 307
LDA++++H H G LPYL + PIY T P + + D + G L
Sbjct: 54 TLDAVLLSHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDL 113
Query: 308 YRPRDIKEVIKHTITLDYGE---VRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAI 364
+ D+ + L Y + ++D I +T NAGH++G I + + G +I
Sbjct: 114 FSLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKI-VKVGEEDIVY 172
Query: 365 TGDFKFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGG 424
DF R L + +L++ Y A Q R +++L+ I QT++ G
Sbjct: 173 ATDFNHKKERHLSGCELDRLQRPSLLITDAY-NAQYQQARRRARDEKLMTNILQTVRNNG 231
Query: 425 KVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIY----LDGMIWEATAIHTAYPEYLSRRL 480
VLI GR E+ +L+ + Y L+ + + + E++S +L
Sbjct: 232 NVLIAVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKL 291
Query: 481 REQIFKEGYNPFL---SEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQL 537
+ NPF ++ H +A+ + P +++AS+ L G + + F Q
Sbjct: 292 TKAFEGARNNPFQFKHIQLCHSLADVYKL-----PAGPKVVLASTPDLESGFTRDLFVQW 346
Query: 538 APDPRNSIIFVSYQAEGTL----------GRQVQSGVR 565
A + NSII + + GTL G+Q++ VR
Sbjct: 347 ASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVR 384
>gi|8923512 hypothetical protein FLJ20542 [Homo sapiens]
>gi|7020719|dbj|BAA91246.1| (AK000549) unnamed protein
product [Homo sapiens]
Length = 292
Score = 80.8 bits (196), Expect = 5e-14
Identities = 48/140 (34%), Positives = 81/140 (57%), Gaps = 7/140 (5%)
Query: 511 DSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIFVSYQAEGTLGRQVQSGVREIPMV 570
D+ P ++ A+ GML G S++ F++ A + +N +I Y +GT+G ++ SG R++ M
Sbjct: 16 DNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEM- 74
Query: 571 GEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKVRPRPERVITVHGEPQKCLDLATS 630
EGR +V++V M+V + FS HAD + +M V + PE V+ VHGE +K L
Sbjct: 75 --EGR-QVLEVKMQVEYM-SFSAHADAKGIMQLVGQA--EPESVLLVHGEAKKMEFLKQK 128
Query: 631 IHRKFGLSTRAPNNLDTIRL 650
I ++ ++ P N +T+ L
Sbjct: 129 IEQELRVNCYMPANGETVTL 148
>pir||T32487 hypothetical protein F09G2.4 - Caenorhabditis elegans
>gi|2435621|gb|AAB71322.1| (AF026215) F09G2.4 gene
product [Caenorhabditis elegans]
Length = 843
Score = 78.8 bits (191), Expect = 2e-13
Identities = 99/431 (22%), Positives = 169/431 (38%), Gaps = 52/431 (12%)
Query: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGL 248
I++ G ++ G L+Q D Y+L+D G D +F+ + ++ K
Sbjct: 5 IKLKVFSGAKDEGPLCYLLQVDGDYILLDCGW------DERFGLQYFEELK-PFIPK--- 54
Query: 249 LDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLY 308
+ A++I+H H G LPYL P+Y T P + + D + + Y
Sbjct: 55 ISAVLISHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHY 114
Query: 309 RPRDIKEVIKHTITLDYGEVRDISPD--IRLTLHNAGHILGSAIVHLHIGNGLHNIAITG 366
D+ + + Y + + D + T AGH+LG +I + G +I
Sbjct: 115 TLDDVDTAFEKVEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTG-EDIVYCV 173
Query: 367 DFKFIPTRLLEPANA-KFPRLETLVMESTYGGANDIQMP---REEAEKRLIEVIHQTLKR 422
DF R L + F R L+ GA+ I +P R++ +++L+ I +T+++
Sbjct: 174 DFNHKKERHLNGCSFDNFNRPHLLIT-----GAHHISLPQMRRKDRDEQLVTKILRTVRQ 228
Query: 423 GGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHTAYPEYLSRRLRE 482
G +I GR E+ +L+ Y M+ + + + + E
Sbjct: 229 KGDCMIVIDTAGRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNE 288
Query: 483 QIFKEG-----YNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQL 537
++FK YNPF + V Q+++ P +++ SS + G S E F
Sbjct: 289 KLFKYDSSSARYNPFTLK---HVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELFLDW 345
Query: 538 APDPRNSIIFVSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADR 597
DPRN +I + A TL ++ VNM DG H DR
Sbjct: 346 CSDPRNGVILTARPASFTLAAKL--------------------VNMAERANDGVLKHEDR 385
Query: 598 RELMNYVAKVR 608
L++ V K R
Sbjct: 386 --LISLVVKKR 394
>dbj|BAB01576.1| (AB045994) unnamed protein product [Macaca fascicularis]
Length = 328
Score = 73.4 bits (177), Expect = 8e-12
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 385 RLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEVMMVLE 444
R L+ ESTY A I+ + E+ ++ +H+T++RGGKVLIP A+GRAQE+ ++LE
Sbjct: 132 RPNLLITESTY--ATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLE 189
Query: 445 DYARIGAIDAPIYLD-GMIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPVANS 503
+ + PIY G+ +A + + + ++++R+ + + E H A
Sbjct: 190 TFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRN----MFEFKHIKAFD 245
Query: 504 KERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSI 545
+ D+ P ++ A+ GML G S++ F++ A + +N +
Sbjct: 246 RA---FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMV 284
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243916695
Number of Sequences: 2977
Number of extensions: 10812766
Number of successful extensions: 25887
Number of sequences better than 1.0e-10: 48
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 25658
Number of HSP's gapped (non-prelim): 59
length of query: 651
length of database: 189,106,746
effective HSP length: 57
effective length of query: 594
effective length of database: 154,992,987
effective search space: 92065834278
effective search space used: 92065834278
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 168 (69.9 bits)