BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1870 (pyrH) DE:uridylate kinase (pyrH)
(225 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75118 uridylate kinase (pyrh) PAB1870 - Pyrococcus abyssi ... 443 e-124
pir||B71014 hypothetical protein PH1408 - Pyrococcus horikoshii ... 392 e-108
sp|Q58656|PYRH_METJA PUTATIVE URIDYLATE KINASE (UK) (URIDINE MON... 215 4e-55
gi|11499624 uridylate kinase (pyrH) [Archaeoglobus fulgidus] >gi... 191 6e-48
gb|AAG20182.1| (AE005095) Vng2015c [Halobacterium sp. NRC-1] 169 3e-41
pir||D69217 hypothetical protein MTH879 - Methanobacterium therm... 165 3e-40
emb|CAC11628.1| (AL445064) uridylate kinase related protein [The... 136 2e-31
gb|AAK41250.1| Uridylate kinase (pyrH) [Sulfolobus solfataricus] 131 6e-30
pir||H72732 hypothetical protein APE0401 - Aeropyrum pernix (str... 122 5e-27
pir||B70171 uridylate kinase (smbA) homolog - Lyme disease spiro... 90 3e-17
sp|Q9ZE07|PYRH_RICPR URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHAT... 75 1e-12
pir||D75386 uridylate kinase - Deinococcus radiodurans (strain R... 72 5e-12
pir||A83189 uridylate kinase PA3654 [imported] - Pseudomonas aer... 72 5e-12
dbj|BAB01794.1| (AB026654) contains similarity to uridylate kina... 72 6e-12
sp|Q9X1U0|PYRH_THEMA URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHAT... 71 1e-11
sp|P71147|PYRH_CHLMU URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHAT... 71 1e-11
sp|P43890|PYRH_HAEIN URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHAT... 70 2e-11
sp|O84685|PYRH_CHLTR URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHAT... 70 2e-11
sp|O66929|PYRH_AQUAE URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHAT... 70 2e-11
pir||H81006 uridylate kinase (EC 2.7.4.-) NMA0326 [imported] - N... 69 3e-11
>pir||D75118 uridylate kinase (pyrh) PAB1870 - Pyrococcus abyssi (strain Orsay)
>gi|5458172|emb|CAB49661.1| (AJ248285) uridylate kinase
(pyrH) [Pyrococcus abyssi]
Length = 225
Score = 443 bits (1128), Expect = e-124
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 MRIVFDIGGSVLVPSKPDVEFIDKLSYELTKVSEDHEIAIVVGGGKTAREYIEVASKFNA 60
MRIVFDIGGSVLVPSKPDVEFIDKLSYELTKVSEDHEIAIVVGGGKTAREYIEVASKFNA
Sbjct: 1 MRIVFDIGGSVLVPSKPDVEFIDKLSYELTKVSEDHEIAIVVGGGKTAREYIEVASKFNA 60
Query: 61 NETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGHTT 120
NETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGHTT
Sbjct: 61 NETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGHTT 120
Query: 121 DAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGA 180
DAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGA
Sbjct: 121 DAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGA 180
Query: 181 STVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTVEP 225
STVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTVEP
Sbjct: 181 STVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTVEP 225
>pir||B71014 hypothetical protein PH1408 - Pyrococcus horikoshii
>gi|3257831|dbj|BAA30514.1| (AP000006) 226aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 226
Score = 392 bits (997), Expect = e-108
Identities = 191/225 (84%), Positives = 207/225 (91%)
Query: 1 MRIVFDIGGSVLVPSKPDVEFIDKLSYELTKVSEDHEIAIVVGGGKTAREYIEVASKFNA 60
MRIVFDIGGSVLVP KPDV+FI KL YELTK+SEDHEIAIVVGGGK AREYIEVASKFN
Sbjct: 2 MRIVFDIGGSVLVPEKPDVDFITKLGYELTKISEDHEIAIVVGGGKVAREYIEVASKFNT 61
Query: 61 NETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGHTT 120
NETFKDYLGIQITRANAMLLIAALKERAYPQVV+DFWEAWKAIQLKKIPVMGGTHPGHTT
Sbjct: 62 NETFKDYLGIQITRANAMLLIAALKERAYPQVVSDFWEAWKAIQLKKIPVMGGTHPGHTT 121
Query: 121 DAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGA 180
DAVSALLAEFL ADLLVVITNVDGVYT+DP+KNPNAKK+ K+ A++LV IV + KAG
Sbjct: 122 DAVSALLAEFLSADLLVVITNVDGVYTEDPKKNPNAKKIPKMKAKDLVDIVSREAGKAGV 181
Query: 181 STVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTVEP 225
STVIDPLAA II+RSGIKTY+IGK+DAL+LFDVI+G H GT +EP
Sbjct: 182 STVIDPLAAKIIMRSGIKTYVIGKEDALKLFDVIKGNHNGTIIEP 226
>sp|Q58656|PYRH_METJA PUTATIVE URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHATE KINASE) (UMP
KINASE) >gi|2129348|pir||B64457 uridylate kinase homolog
- Methanococcus jannaschii >gi|1591893|gb|AAB99262.1|
(U67566) uridylate kinase (pyrH) [Methanococcus
jannaschii]
Length = 240
Score = 215 bits (541), Expect = 4e-55
Identities = 120/226 (53%), Positives = 158/226 (69%), Gaps = 3/226 (1%)
Query: 1 MRIVFDIGGSVLVPSK-PDVEFIDKLSYELTKVSED-HEIAIVVGGGKTAREYIEVASKF 58
MRIVFD+GGSV++P + E I + + K+ ++ HE+AIVVGGGKTAREYIE+ +
Sbjct: 15 MRIVFDLGGSVVMPKEGAKAEKIMEYANIFKKIKDEGHEVAIVVGGGKTAREYIEIGREL 74
Query: 59 NANETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGH 118
A+E+F D LGI TR NAM+LI AL + + +V T F EA + L KIPVMGGTHPGH
Sbjct: 75 GASESFCDELGIMATRMNAMILITALGDYSIKKVPTSFEEAELILNLGKIPVMGGTHPGH 134
Query: 119 TTDAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKA 178
TTDAV+A LAEF+ ADLLV+ TNVDGVY DP K +AKK +K+SA+ELV + S+ KA
Sbjct: 135 TTDAVAASLAEFINADLLVIGTNVDGVYDKDPNKYEDAKKFDKMSAKELVDLAISSSLKA 194
Query: 179 GASTVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTVE 224
G+S+V+D LAA II R+ +K ++ K L +V +G GT +E
Sbjct: 195 GSSSVVDLLAAKIIERAKLKVAVV-KGTPEELLNVSKGIINGTIIE 239
>gi|11499624 uridylate kinase (pyrH) [Archaeoglobus fulgidus]
>gi|7429719|pir||A69505 uridylate kinase (pyrH) homolog
- Archaeoglobus fulgidus >gi|2648494|gb|AAB89213.1|
(AE000962) uridylate kinase (pyrH) [Archaeoglobus
fulgidus]
Length = 219
Score = 191 bits (480), Expect = 6e-48
Identities = 105/224 (46%), Positives = 154/224 (67%), Gaps = 7/224 (3%)
Query: 1 MRIVFDIGGSVLVPSKPDVEFIDKLSYELTKVSEDHEIAIVVGGGKTAREYIEVASKFNA 60
M++V +GGSVL + E I + + + V++ +++ +VVGGGK AREYI+ A + A
Sbjct: 1 MKVVLSLGGSVL---SNESEKIREFAKTIESVAQQNQVFVVVGGGKLAREYIKRARELGA 57
Query: 61 NETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGHTT 120
+ETF DY+GI TR NAMLLI+A+ A +V DF EA + +L ++ VMGGT PGHTT
Sbjct: 58 SETFCDYIGIAATRLNAMLLISAIPSAA-KKVPVDFMEAEELSKLYRVVVMGGTFPGHTT 116
Query: 121 DAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGA 180
DA +ALLAEF+ AD+ + TNVDGVY+ DP+ + +A K +++S ++LV+IV +S++KAG
Sbjct: 117 DATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGT 176
Query: 181 STVIDPLAASIILRSGIKTYII-GKKDALRLFDVIRGKHEGTTV 223
+ VID LAA II RS IKTY+I G + + ++G+ GT +
Sbjct: 177 NVVIDLLAAKIIERSKIKTYVILGTPE--NIMKAVKGEAVGTVI 218
>gb|AAG20182.1| (AE005095) Vng2015c [Halobacterium sp. NRC-1]
Length = 241
Score = 169 bits (423), Expect = 3e-41
Identities = 97/227 (42%), Positives = 141/227 (61%), Gaps = 3/227 (1%)
Query: 1 MRIVFDIGGSVLVPSKPDVEFIDKLSYELTKVSEDH-EIAIVVGGGKTAREYIEVASKFN 59
MR+V IGGSVL P D + +D + + ++++ E+ VVGGG AR+YI A +
Sbjct: 1 MRVVVSIGGSVLAPGL-DADQVDAHADAINELTDAGCEVGAVVGGGGVARDYIGTARELG 59
Query: 60 ANETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGHT 119
ANE D +G+ +TR NA LLIAAL A P D+ +A +A++ I VMGG G T
Sbjct: 60 ANEIELDDIGVDVTRLNARLLIAALGGDAAPSPAEDYEDAGEAMRRGDIAVMGGVVAGQT 119
Query: 120 TDAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAG 179
TDAVSA LAE+ ADLL+ T+V GV++ DP ++ +A+ +++A ELV I+ AG
Sbjct: 120 TDAVSAALAEYTDADLLLYATSVPGVFSADPNEDADAEHFTRMTAGELVDIIADIEMNAG 179
Query: 180 ASTVIDPLAASIILRSGIKTYIIGKKDALRLFDVIR-GKHEGTTVEP 225
+S +D LAA +I RSG++T ++ D R+ D +R G+H+GT V P
Sbjct: 180 SSAPVDLLAAKLIERSGVRTIVLDGTDPRRIVDAVRFGEHDGTDVIP 226
>pir||D69217 hypothetical protein MTH879 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621973|gb|AAB85377.1| (AE000864)
uridine monophosphate kinase [Methanobacterium
thermoautotrophicum]
Length = 224
Score = 165 bits (414), Expect = 3e-40
Identities = 96/225 (42%), Positives = 138/225 (60%), Gaps = 2/225 (0%)
Query: 1 MRIVFDIGGSVLVPSKPDVEFIDKLSYELTKVSEDHEIAIVVGGGKTAREYIEVASKFNA 60
MRIV IGGS+++ S+ E + L + ++H++ +VVGGG+ AR+YI VA + A
Sbjct: 1 MRIVITIGGSIII-SEFSHEMFRAYADILNSLRDEHDLFVVVGGGRPARDYIGVARELGA 59
Query: 61 NETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGHTT 120
+E D +GI +TR NA LLI AL + AYP V +F EA + +I VMGGT P H+T
Sbjct: 60 SEARCDDIGIDVTRLNARLLITALGDSAYPGVPENFREALEVAATGRIVVMGGTEPAHST 119
Query: 121 DAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGA 180
DAV A+LAE + ADL++ +T+VDG Y DP K P+A+ +I+A E+++ + S +AG
Sbjct: 120 DAVGAILAETVEADLMINLTSVDGFYDRDPAKYPDARFYPEITASEMLEHLRGSDVRAGT 179
Query: 181 STVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTVEP 225
D A +I RSGI+T I+ D L + G+ GTTV P
Sbjct: 180 YEFFDHTALHMIRRSGIRTMIVNGNDPENLLRALDGE-IGTTVIP 223
>emb|CAC11628.1| (AL445064) uridylate kinase related protein [Thermoplasma
acidophilum]
Length = 229
Score = 136 bits (340), Expect = 2e-31
Identities = 81/220 (36%), Positives = 123/220 (55%), Gaps = 3/220 (1%)
Query: 3 IVFDIGGSVLVPSKPDVEFIDKLSYELTKVSEDHEIAIVVGGGKTAREYIEVASKFNANE 62
IV +GGSV+ D +++ + + + S+ + IV GGG+TAR YI V K N NE
Sbjct: 5 IVISLGGSVISGDPIDADYMKSFA-RILEASKYRRVGIVTGGGRTARSYISVLRKLNVNE 63
Query: 63 TFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGHTTDA 122
D +GI TR NA L +A+L + P + +A + + VMGGT PGHTTD
Sbjct: 64 NVLDEIGIYATRMNA-LSMASLIPGSNPTIPFTVEDAVNLMNTYRFVVMGGTEPGHTTDT 122
Query: 123 VSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGAST 182
V+ALL E L+ +T+VDGVY DP + NAK+ ++I RE + + KS++ AG +
Sbjct: 123 VAALLCERSATRTLINVTSVDGVYDMDPHRFANAKRFDRIGYREAIALSTKSSAGAGPNV 182
Query: 183 VIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTT 222
+D A +I +RS I+ I+ +D L +++G +T
Sbjct: 183 FMDITALTIAMRSRIRV-IVTSRDIDNLEKILKGDRAVST 221
>gb|AAK41250.1| Uridylate kinase (pyrH) [Sulfolobus solfataricus]
Length = 227
Score = 131 bits (327), Expect = 6e-30
Identities = 78/230 (33%), Positives = 132/230 (56%), Gaps = 10/230 (4%)
Query: 1 MRIVFDIGGSVLVPSKPDVEFIDKLSYELTKVSED-HEIAIVVGGGKTAREYIEVASKFN 59
M I+ I G + +V+ + L + +++++ + IV GGG TAR YI++A +
Sbjct: 2 MNIILKISGKFF--DEDNVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIG 59
Query: 60 ANETFKDYLGIQITRANAMLLIAALKERAY---PQVVTDFWEAWKAIQLKKIPVMGGTHP 116
E + D LGI +R NA L++ +L++ AY PQ + +F + W K+ V GG P
Sbjct: 60 IGEAYLDLLGIWASRLNAYLVMFSLQDLAYMHVPQSLEEFIQDWSH---GKVVVTGGFQP 116
Query: 117 GHTTDAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIV-GKST 175
G +T AV+AL+AE + LVV TNVDGVY DPR + K + ++ ++L +I+ G +
Sbjct: 117 GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQS 176
Query: 176 SKAGASTVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTVEP 225
+AG ++DPLA I+ RS I+ ++ + R+ D+++G+ + +EP
Sbjct: 177 VQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 226
>pir||H72732 hypothetical protein APE0401 - Aeropyrum pernix (strain K1)
>gi|5104040|dbj|BAA79356.1| (AP000059) 246aa long
hypothetical protein [Aeropyrum pernix]
Length = 246
Score = 122 bits (302), Expect = 5e-27
Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 7/225 (3%)
Query: 3 IVFDIGGSVLVPSKPDVEFIDKLSYELTK-VSEDHEIAIVVGGGKTAREYIEVASKFNAN 61
+V I GS++ P P ++++ +L L V +A+VVGGG AR YI+V + +
Sbjct: 25 VVVKISGSLVHP--PRLDYLTRLRDVLWGLVDGGFRVAVVVGGGGLARSYIDVLRRAGVS 82
Query: 62 ETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLKKIPVMGGTHPGHTTD 121
E D +GI+ +R NA LL L R+ P + E + IPV GG PG +T+
Sbjct: 83 EALLDEMGIESSRLNASLLAKLLYPRSQPYPLASLREVLEVFMTGLIPVSGGFQPGQSTN 142
Query: 122 AVSALLAEFLGA-DLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGK-STSKAG 179
AV+A++AE LGA LL + V+GVY+D+P P A+ L +++ R+L I+ K S+ +AG
Sbjct: 143 AVAAVIAEALGARTLLNCLKGVEGVYSDEP-STPGARLLRRLTYRQLEDILVKVSSQRAG 201
Query: 180 ASTVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTVE 224
+ T+ D +A S+ RSG++ D ++ ++G+ +G+ VE
Sbjct: 202 SYTLWDMVALSVARRSGLRIVFFDCSDPANIWGALKGE-KGSIVE 245
>pir||B70171 uridylate kinase (smbA) homolog - Lyme disease spirochete
>gi|2688487|gb|AAC66932.1| (AE001158) uridylate kinase
(smbA) [Borrelia burgdorferi]
Length = 229
Score = 89.7 bits (219), Expect = 3e-17
Identities = 64/207 (30%), Positives = 105/207 (49%), Gaps = 14/207 (6%)
Query: 4 VFDIGGSVLVPSKPDVEFIDKLSYELTK---VSEDHEIAIVVGGGKTAREYIEVASKFNA 60
+ +GG V+ ++ ++EFI + K +E +I ++VGGG+ AREY + K N
Sbjct: 4 IISLGGGVINSNQINIEFIKNFKNFVFKWLLENEKRKIILIVGGGRVAREYQDAYKKINP 63
Query: 61 NETFK----DYLGIQITRANAMLLIAALKERAYPQVVTDFWEAWKAIQLK-KIPVMGGTH 115
+ FK D +GI TR NA L + ++VT+ K K KI + G
Sbjct: 64 D--FKVHELDEIGIISTRLNAEFLSKVMNPFCKDKIVTN---PLKNFSFKGKILIASGWK 118
Query: 116 PGHTTDAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKST 175
G +TD ++ AE ++ ITNV+ VY DP+K NA +K++ ++L IVG+
Sbjct: 119 SGFSTDYIAVKFAEKFNKKDIINITNVNQVYDKDPKKFKNATAFKKLNWKQLQNIVGQKW 178
Query: 176 SKAGASTVIDPLAASIILRSGIKTYII 202
+ G + DP+A + + G+ YI+
Sbjct: 179 N-PGLNLPFDPIATKLSSKLGLTLYIV 204
>sp|Q9ZE07|PYRH_RICPR URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHATE KINASE) (UMP KINASE)
>gi|7447594|pir||H71725 uridylate kinase (pyrH) RP155 -
Rickettsia prowazekii >gi|3860722|emb|CAA14623.1|
(AJ235270) URIDYLATE KINASE (pyrH) [Rickettsia
prowazekii]
Length = 242
Score = 74.5 bits (180), Expect = 1e-12
Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 29/240 (12%)
Query: 2 RIVFDIGGSVLVPSKP---DVEFIDKLSYELTKVSE-DHEIAIVVGGGKTAREYIEVASK 57
+++ + G L+ +K + E I K++ ++ +V + E+AIVVGGG R A+
Sbjct: 12 KVLLKVSGEALMGNKQFGHEYEVIKKIAEDIKEVIDLGLEVAIVVGGGNIYRGIN--AAL 69
Query: 58 FNANETFKDYLGIQITRANAMLLIAALKERA-YPQVVTDF-----------WEAWKAIQL 105
+ DY+G+ T NA+ L ++ Y +V++ +A + ++
Sbjct: 70 VGMDRASADYIGMLATVMNALTLQNVMESLGIYTRVLSAIPMMSVCEPYIRRKAKRHMEK 129
Query: 106 KKIPVM-GGT-HPGHTTDAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKIS 163
K++ + GGT +P TTD+ + L A + D+L+ T VDGVY DP+KNPNAKK IS
Sbjct: 130 KRVVIFAGGTGNPFCTTDSAAVLRAIEMNCDILLKATQVDGVYDSDPKKNPNAKKYFTIS 189
Query: 164 ARELVQIVGKSTSKAGASTVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTV 223
++++ V+D A ++ + + + K+ VI+ K + TT+
Sbjct: 190 YKDVIN---------NHLQVMDTAAIAVARENKLPIRVFSIKEHGNFARVIQDKGQYTTI 240
>pir||D75386 uridylate kinase - Deinococcus radiodurans (strain R1)
>gi|6459274|gb|AAF11078.1|AE001995_3 (AE001995)
uridylate kinase [Deinococcus radiodurans]
Length = 245
Score = 72.2 bits (174), Expect = 5e-12
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 27/203 (13%)
Query: 37 EIAIVVGGGKTAREYIEVASKFNANETFKDYLGIQITRANAMLLIAALKERAYP------ 90
E+A+V+GGG R + + DY+G+ T NAM L A++ P
Sbjct: 52 ELAVVIGGGNLWRG---ARNGQGMDPATADYIGMLGTVMNAMALQDAMEAAGKPTRIMSA 108
Query: 91 ----QVVTDFWE--AWKAIQLKKIPVMGGTH--PGHTTDAVSALLAEFLGADLLVVITN- 141
QV + A + ++ ++ + GG + P TTD S L A +GAD++++ N
Sbjct: 109 IHMQQVAEPYIRRRAMRHLEKGRVVIFGGGNGAPFFTTDTTSTLRALEIGADVVLMAKNA 168
Query: 142 VDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGASTVIDPLAASIILRSGIKTYI 201
VDGVY DPRKNP+AK+ E+++ ++V+ V+D A ++ + G+ +
Sbjct: 169 VDGVYDSDPRKNPDAKRYEQLTHMDVVE---------QRLEVMDATALTLCMDKGLPIVV 219
Query: 202 IGKKDALRLFDVIRGKHEGTTVE 224
+ L ++RG+ GT ++
Sbjct: 220 FDIFEEGNLARLLRGERVGTLIQ 242
>pir||A83189 uridylate kinase PA3654 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949815|gb|AAG07042.1|AE004785_6
(AE004785) uridylate kinase [Pseudomonas aeruginosa]
Length = 245
Score = 72.2 bits (174), Expect = 5e-12
Identities = 64/241 (26%), Positives = 115/241 (47%), Gaps = 29/241 (12%)
Query: 2 RIVFDIGGSVLVPSKP---DVEFIDKLSYELTK-VSEDHEIAIVVGGGKTAREYIEVASK 57
RI+ + G L+ S+ D + +D+++ E+ + V ++ +V+GGG R S
Sbjct: 14 RILLKLSGEALMGSEEFGIDPKVLDRMALEIGQLVGIGVQVGLVIGGGNLFRG--AALSA 71
Query: 58 FNANETFKDYLGIQITRANAMLLIAALKERAYPQVV---------TDFWEAWKAIQL--- 105
+ D++G+ T N + + AL+ P +V TD ++ KA++
Sbjct: 72 AGMDRVTGDHMGMLATVMNGLAMRDALERSNIPALVMSAISMVGVTDHYDRRKAMRHLGG 131
Query: 106 -KKIPVMGGT-HPGHTTDAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKIS 163
+ + GT +P TTD+ + L A + AD+++ T VDGVYT DP K+PNA+K E+++
Sbjct: 132 GEVVIFSAGTGNPFFTTDSAACLRAIEIDADVVLKATKVDGVYTADPFKDPNAEKFERLT 191
Query: 164 ARELVQIVGKSTSKAGASTVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTV 223
E++ K G V+D A + + + L +++ G EGT +
Sbjct: 192 YDEVLD------RKLG---VMDLTAICLCRDQNMPLRVFNMNKPGALLNIVVGGAEGTLI 242
Query: 224 E 224
E
Sbjct: 243 E 243
>dbj|BAB01794.1| (AB026654) contains similarity to uridylate kinase~gene_id:MVE11.4
[Arabidopsis thaliana]
Length = 339
Score = 71.8 bits (173), Expect = 6e-12
Identities = 56/201 (27%), Positives = 98/201 (47%), Gaps = 24/201 (11%)
Query: 37 EIAIVVGGGKTAREYIEVASKFNANETFKDYLGIQITRANAMLLIAALKERAYP-QVVTD 95
E+AIVVGGG R + + DY+G+ T NA+ L A ++ P +V T
Sbjct: 137 EVAIVVGGGNIFRGSTWAGCS-GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 195
Query: 96 FW-----------EAWKAIQLKKIPVM--GGTHPGHTTDAVSALLAEFLGADLLVVITNV 142
F A + ++ ++ + G +P TTD +AL + A++++ TNV
Sbjct: 196 FRMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 255
Query: 143 DGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGASTVIDPLAASIILRSGIKTYII 202
DGV+ DDP++NPNA+ L+ ++ +E+ TSK +V+D A ++ + I +
Sbjct: 256 DGVFDDDPKRNPNARLLDSLTYQEV-------TSK--DLSVMDMTAITLCQENNIPVVVF 306
Query: 203 GKKDALRLFDVIRGKHEGTTV 223
+ + I+G+ GT +
Sbjct: 307 NLSEPGNIAKAIKGERVGTLI 327
>sp|Q9X1U0|PYRH_THEMA URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHATE KINASE) (UMP KINASE)
>gi|7447601|pir||H72234 uridylate kinase - Thermotoga
maritima (strain MSB8)
>gi|4982175|gb|AAD36671.1|AE001804_15 (AE001804)
uridylate kinase [Thermotoga maritima]
Length = 231
Score = 71.0 bits (171), Expect = 1e-11
Identities = 68/243 (27%), Positives = 115/243 (46%), Gaps = 31/243 (12%)
Query: 1 MRIVFDIGGSVLVPSKP---DVEFIDKLSYEL-TKVSEDHEIAIVVGGGKTAREYIEVAS 56
MR++ + G L D E ++ + E+ + + E +I IVVG G R +E+
Sbjct: 1 MRVLVKLSGEALSGEGGRGFDPERVNYIVNEIKSAIEEGFKIGIVVGAGNLFRG-VELK- 58
Query: 57 KFNANETFKDYLGIQITRANAMLLI-----AALKERAYPQVVT-------DFWEAWKAIQ 104
N T D +G+ T N++ L + LK R Y Q+V ++ A++
Sbjct: 59 --NLTMTRADQIGLLGTVMNSVYLKDIFERSGLKARIYSQIVNLPDVERVNYDSIESALR 116
Query: 105 LKKIPVMGG--THPGHTTDAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKI 162
I + G ++P TTD + L A+ + A L+V T VDGVY DP+K P+AKK+ +
Sbjct: 117 ENSILIFAGGTSNPFFTTDTAAVLRAQEMRAKLVVKATKVDGVYDKDPKKFPDAKKIPHL 176
Query: 163 SARELVQIVGKSTSKAGASTVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTT 222
+ E +++ K V+D A ++ + GI +I + L ++G+ G+T
Sbjct: 177 TFSEAMKMGLK---------VMDAEAFALCKKLGITVKVINFFEPGTLLKALKGEDVGST 227
Query: 223 VEP 225
V P
Sbjct: 228 VVP 230
>sp|P71147|PYRH_CHLMU URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHATE KINASE) (UMP KINASE)
>gi|11279245|pir||H81746 uridylate kinase TC0049
[imported] - Chlamydia muridarum (strain Nigg)
>gi|1518662|gb|AAB07071.1| (U60196) UMP kinase
[Chlamydia muridarum] >gi|7190088|gb|AAF38938.1|
(AE002272) uridylate kinase [Chlamydia muridarum]
Length = 245
Score = 71.0 bits (171), Expect = 1e-11
Identities = 68/216 (31%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 2 RIVFDIGGSVLVPS----KPDVEFIDKLSYELTKV-SEDHEIAIVVGGGKTAREYIEVAS 56
R++F I G L + K E + +L EL V + D E+A+V+GGG R + +
Sbjct: 8 RVLFKISGEALSDASSSDKISEERLSRLIAELKVVRNADVEVAVVIGGGNILRG-LSQSQ 66
Query: 57 KFNANETFKDYLGIQITRANAMLLIAALKERAYPQVVTDF------------WEAWKAIQ 104
N D +G+ T N M L ALK P ++T +A A+
Sbjct: 67 NLQINRVSADQMGMLATLINGMALADALKTEDVPNLLTSTLSCPQLAELYNPQKASDALS 126
Query: 105 LKKIPV--MGGTHPGHTTDAVSALLAEFLGADLLVVIT-NVDGVYTDDPRKNPNAKKLEK 161
K+ + MG P TTD +AL A L D+L+ T +VDGVY DPR+ +A + +
Sbjct: 127 QGKVVICTMGAGAPYLTTDTGAALRACELKVDVLLKATMHVDGVYDRDPREFADAVRYDH 186
Query: 162 ISARELVQIVGKSTSKAGASTVIDPLAASIILRSGI 197
IS R+ + + GA IDP A S+ + +GI
Sbjct: 187 ISYRDFL------SQGLGA---IDPSAVSLCMEAGI 213
>sp|P43890|PYRH_HAEIN URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHATE KINASE) (UMP KINASE)
>gi|1075040|pir||H64180 uridine 5'-monophosphate kinase
(EC 2.7.4.-) - Haemophilus influenzae (strain Rd KW20)
>gi|1574616|gb|AAC22719.1| (U32786) uridylate kinase
(pyrH) [Haemophilus influenzae Rd]
Length = 237
Score = 70.2 bits (169), Expect = 2e-11
Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 30/223 (13%)
Query: 18 DVEFIDKLSYELTKVSE-DHEIAIVVGGGKTAREYIEVASKFNANETFKDYLGIQITRAN 76
D +D+++ E+ ++ E E+++V+GGG R +K N D++G+ T N
Sbjct: 27 DPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRG--AKLAKAGMNRVVGDHMGMLATVMN 84
Query: 77 AMLLIAAL-KERAYPQVVTDF----------W-EAWKAIQLKKIPVM--GGTHPGHTTDA 122
+ + +L + ++++ F W EA K ++ K++ + G +P TTD+
Sbjct: 85 GLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDS 144
Query: 123 VSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGAST 182
+ L + AD+++ T VDGVY DP KNP+AK + +S E++ K
Sbjct: 145 TACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKELK--------- 195
Query: 183 VIDPLAASIILRSG--IKTYIIGKKDALRLFDVIRGKHEGTTV 223
V+D A ++ G I+ + +GK ALR V+ G EGTT+
Sbjct: 196 VMDLSAFTLARDHGMPIRVFNMGKPGALR--QVVTGTEEGTTI 236
>sp|O84685|PYRH_CHLTR URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHATE KINASE) (UMP KINASE)
>gi|7447603|pir||E71484 probable UMP kinase - Chlamydia
trachomatis (serotype D, strain UW3/Cx)
>gi|3329130|gb|AAC68273.1| (AE001338) UMP Kinase
[Chlamydia trachomatis]
Length = 245
Score = 70.2 bits (169), Expect = 2e-11
Identities = 67/216 (31%), Positives = 101/216 (46%), Gaps = 30/216 (13%)
Query: 2 RIVFDIGGSVLVP----SKPDVEFIDKLSYELTKV-SEDHEIAIVVGGGKTAREYIEVAS 56
R++F I G L ++ E + +L EL V + D E+A+V+GGG R + +
Sbjct: 8 RVLFKISGEALSDGDSSNRISEERLSRLIAELKVVRNADVEVALVIGGGNILRG-LSQSQ 66
Query: 57 KFNANETFKDYLGIQITRANAMLLIAALKERAYPQVVTDFW------------EAWKAIQ 104
N D +G+ T N M L ALK P ++T +A A+
Sbjct: 67 SLQINRVSADQMGMLATLINGMALADALKTEDVPNLLTSTLSCPQLAELYNPQKASDALS 126
Query: 105 LKKIPV--MGGTHPGHTTDAVSALLAEFLGADLLVVIT-NVDGVYTDDPRKNPNAKKLEK 161
K+ + MG P TTD +AL A L D+L+ T +VDGVY DPR+ +A + +
Sbjct: 127 QGKVVICTMGAGAPYLTTDTGAALRACELKVDVLLKATMHVDGVYDQDPRECADAVRYDH 186
Query: 162 ISARELVQIVGKSTSKAGASTVIDPLAASIILRSGI 197
IS R+ + + GA IDP A S+ + +GI
Sbjct: 187 ISYRDFL------SQGLGA---IDPAAISLCMEAGI 213
>sp|O66929|PYRH_AQUAE URIDYLATE KINASE (UK) (URIDINE MONOPHOSPHATE KINASE) (UMP KINASE)
>gi|7447598|pir||E70362 UMP kinase - Aquifex aeolicus
>gi|2983290|gb|AAC06882.1| (AE000703) UMP kinase
[Aquifex aeolicus]
Length = 240
Score = 69.9 bits (168), Expect = 2e-11
Identities = 59/222 (26%), Positives = 105/222 (46%), Gaps = 27/222 (12%)
Query: 18 DVEFIDKLSYELTKVSE-DHEIAIVVGGGKTAREYIEVASKFNANETFKDYLGIQITRAN 76
D F++ +S+E+ V + ++AIV+GGG R + + + DY+G+ T N
Sbjct: 28 DPAFLEYISHEIKNVYDLGVQVAIVIGGGNIFRGF--QGKEIGVDRATADYMGMLATVIN 85
Query: 77 AMLLIAALKERA-----------YPQVVTDFWEAWKAIQLKKIPVM---GGT-HPGHTTD 121
A+ L +AL+ QV + L+K ++ GGT +P +TD
Sbjct: 86 ALALQSALENHVNIPTRVLSAIEMRQVAEPYIRRRAIRHLEKGRIVIFAGGTGNPFFSTD 145
Query: 122 AVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKISARELVQIVGKSTSKAGAS 181
+AL A +GA++L+ T V G+Y DP K P+A +++IS E++ + K
Sbjct: 146 TAAALRAAEIGAEVLIKATKVGGIYDKDPEKYPDAVLIKEISYLEVINMGLK-------- 197
Query: 182 TVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTV 223
V+D A ++ + I ++ K+ L + G+ G+ V
Sbjct: 198 -VMDHTALTLCKENEIPIIVLNVKEKGNLRRAVLGEEVGSVV 238
>pir||H81006 uridylate kinase (EC 2.7.4.-) NMA0326 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
>gi|7227366|gb|AAF42420.1| (AE002559) uridylate kinase
[Neisseria meningitidis MC58]
>gi|7379082|emb|CAB83631.1| (AL162752) uridylate kinase
[Neisseria meningitidis Z2491]
Length = 239
Score = 69.5 bits (167), Expect = 3e-11
Identities = 69/240 (28%), Positives = 107/240 (43%), Gaps = 29/240 (12%)
Query: 2 RIVFDIGGSVLVPSKPDVEFIDKLSYELTKVSE----DHEIAIVVGGGKTAREYIEVASK 57
R++ + G L+ S P D + + +++E ++ IVVGGG R A
Sbjct: 9 RVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGS 68
Query: 58 FNANETFKDYLGIQITRANAMLLIAA-----LKERAYP----QVVTDFWEAWKAIQL--- 105
+ DY+G+ T NA+ L A +K R Q + + + KAIQ
Sbjct: 69 MD--RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEE 126
Query: 106 -KKIPVMGGT-HPGHTTDAVSALLAEFLGADLLVVITNVDGVYTDDPRKNPNAKKLEKIS 163
K + GT +P TTD +AL + D+++ TNVDGVYT DP+K+P+A + E I+
Sbjct: 127 GKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETIT 186
Query: 164 ARELVQIVGKSTSKAGASTVIDPLAASIILRSGIKTYIIGKKDALRLFDVIRGKHEGTTV 223
E + K V+D A ++ + + G L VI G+ EGT V
Sbjct: 187 FDEALLKNLK---------VMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 237
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78709416
Number of Sequences: 2977
Number of extensions: 3008142
Number of successful extensions: 7616
Number of sequences better than 1.0e-10: 20
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7584
Number of HSP's gapped (non-prelim): 20
length of query: 225
length of database: 189,106,746
effective HSP length: 57
effective length of query: 168
effective length of database: 154,992,987
effective search space: 26038821816
effective search space used: 26038821816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)