BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1871 (dppA-2) DE:dipeptide ABC transporter,
dipeptide-binding protein (dppA)
(705 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75118 dipeptide abc transporter, dipeptide-binding protein... 1473 0.0
pir||C71014 hypothetical protein PH1409 - Pyrococcus horikoshii ... 1359 0.0
pir||E72616 hypothetical protein APE1390 - Aeropyrum pernix (str... 753 0.0
pir||G72720 probable oligopeptide-binding protein oppA APE0304 -... 149 1e-34
pir||H83083 probable binding protein component of ABC transporte... 142 1e-32
pdb|1DPE| Dipeptide-Binding Protein 141 2e-32
pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycy... 141 3e-32
sp|P23847|DPPA_ECOLI PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN PRE... 141 3e-32
pir||A43832 heme-binding protein A precursor - Haemophilus influ... 136 1e-30
pir||G83083 probable binding protein component of ABC transporte... 135 1e-30
pir||D64098 heme-binding protein A precursor - Haemophilus influ... 134 2e-30
sp|P33950|HBPA_HAEIN HEME-BINDING PROTEIN A PRECURSOR (HEMIN-BIN... 134 2e-30
dbj|BAB07363.1| (AP001519) dipeptide ABC transporter (dipeptide-... 134 4e-30
pir||D72373 hypothetical protein TM0460 - Thermotoga maritima (s... 130 5e-29
pir||B83082 probable binding protein component of ABC transporte... 129 8e-29
pir||F71951 periplasmic dipeptide transport substrate-binding pr... 129 1e-28
pir||B64557 dipeptide ABC transporter, periplasmic dipeptide-bin... 126 7e-28
pir||C83084 probable binding protein component of ABC transporte... 123 8e-27
pir||B72289 oligopeptide ABC transporter, periplasmic oligopepti... 121 3e-26
pir||H75413 extracellular solute-binding protein, family 5 - Dei... 119 9e-26
pir||T44635 dipeptide transporter protein dppA [imported] - Baci... 118 2e-25
dbj|BAA15142.1| (D90789) Periplasmic dipeptide transport protein... 116 8e-25
sp|P76128|YDDS_ECOLI PUTATIVE BINDING PROTEIN YDDS PRECURSOR >gi... 116 8e-25
pir||C70425 transporter (extracellular solute binding protein fa... 115 1e-24
pir||E72451 probable transport system binding protein APE2257 - ... 115 2e-24
gi|10955080 agaA [Agrobacterium tumefaciens] >gi|11277227|pir||T... 113 5e-24
pir||B82242 oligopeptide ABC transporter, periplasmic oligopepti... 109 1e-22
emb|CAB96044.1| (AJ250012) surface antigen [Borrelia afzelii] 107 5e-22
pir||E75529 probable peptide ABC transporter, periplasmic peptid... 106 9e-22
dbj|BAB03750.1| (AP001507) oligopeptide ABC transporter (oligope... 106 9e-22
pir||G75577 extracellular solute-binding protein, family 5 - Dei... 106 9e-22
dbj|BAA94699.1| (AB026907) dipeptide transporter DppA homolog [O... 105 2e-21
sp|P42061|APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR... 102 1e-20
pir||C75202 dipeptide abc transporter, dipeptide-binding protein... 102 2e-20
pir||G82981 probable binding protein component of ABC dipeptide ... 101 3e-20
emb|CAB96045.1| (AJ250013) surface antigen [Borrelia garinii] 100 7e-20
pir||T34583 probable periplasmic oligopeptide binding protein - ... 100 9e-20
pir||B82170 peptide ABC transporter, periplasmic peptide-binding... 100 9e-20
pir||B71130 probable oligopeptide binding protein APPA - Pyrococ... 99 2e-19
gb|AAC46283.1| (AF000366) oligopeptide permease homolog AII [Bor... 99 2e-19
pir||H70140 oligopeptide ABC transporter, periplasmic oligopepti... 98 3e-19
pir||B75364 extracellular solute-binding protein, family 5 - Dei... 98 5e-19
dbj|BAB06745.1| (AP001517) oligopeptide ABC transpoter (oligopep... 98 5e-19
sp|P45285|SAPA_HAEIN PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA ... 98 5e-19
emb|CAA10909.1| (AJ222649) sapA [Erwinia chrysanthemi] 97 6e-19
sp|Q47622|SAPA_ECOLI PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA ... 96 1e-18
dbj|BAA14855.1| (D90767) Peptide transport periplasmic protein S... 96 1e-18
sp|P06202|OPPA_SALTY PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PR... 95 3e-18
pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complex... 95 3e-18
pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein C... 95 3e-18
gi|11497010 oligopeptide ABC transporter, periplasmic oligopepti... 94 7e-18
sp|P36634|SAPA_SALTY PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA ... 93 9e-18
pir||D64882 periplasmic oligopeptide-binding protein precursor -... 90 6e-17
sp|P77348|MPPA_ECOLI PERIPLASMIC MUREIN PEPTIDE-BINDING PROTEIN ... 90 6e-17
emb|CAA40006.1| (X56678) dciAE [Bacillus subtilis] 89 2e-16
pir||A82356 peptide ABC transporter, periplasmic peptide-binding... 89 2e-16
pir||S16651 dciAE protein - Bacillus subtilis 88 3e-16
emb|CAB95801.1| (AL359949) putative solute binding transport lip... 88 4e-16
sp|P24141|OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA PRECURSOR... 87 9e-16
pir||A38447 oligopeptide ABC transport system substrate-binding ... 86 1e-15
dbj|BAB04735.1| (AP001510) oligopeptide ABC transporter (oligope... 86 1e-15
pir||G69618 dipeptide ABC transporter (dipeptide-binding protein... 86 1e-15
sp|P26906|DPPE_BACSU DIPEPTIDE-BINDING PROTEIN DPPE PRECURSOR 86 1e-15
pir||G70140 oligopeptide ABC transporter, periplasmic oligopepti... 85 2e-15
sp|P23843|OPPA_ECOLI PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PR... 85 3e-15
gb|AAC34990.1| (AF043071) oligopeptide permease periplasmic bind... 85 3e-15
dbj|BAA14775.1| (D90763) Periplasmic oligopeptide-binding protei... 84 4e-15
gb|AAC46282.1| (AF000366) oligopeptide permease homolog AI [Borr... 84 4e-15
gb|AAB97671.1| (AF005657) plasminogen binding protein [Borrelia ... 84 6e-15
dbj|BAB04286.1| (AP001509) nickel transport system (nickel-bindi... 84 6e-15
emb|CAB59508.1| (AL132648) putative lipoprotein oligopeptide bin... 83 7e-15
sp|Q46863|YGIS_ECOLI PUTATIVE BINDING PROTEIN YGIS PRECURSOR >gi... 83 1e-14
pir||A70141 oligopeptide ABC transporter, periplasmic oligopepti... 82 2e-14
gb|AAC34992.1| (AF043071) oligopeptide permease periplasmic bind... 82 2e-14
sp|P75797|YLIB_ECOLI PUTATIVE BINDING PROTEIN YLIB PRECURSOR >gi... 82 2e-14
dbj|BAA35525.1| (D90721) Heme-binding protein a precursor (hemin... 82 2e-14
gb|AAC46284.1| (AF000366) oligopeptide permease homolog AIII [Bo... 82 3e-14
pir||D72107 oligopeptide binding protein - Chlamydophila pneumon... 81 4e-14
pir||A81564 peptide ABC transporter, periplasmic peptide-binding... 81 4e-14
pir||A36263 polyamine-induced protein precursor - Escherichia co... 81 5e-14
dbj|BAA97043.1| (AB015765) SapA [Vibrio alginolyticus] 81 5e-14
dbj|BAB04066.1| (AP001508) oligopeptide ABC transporter (oligope... 81 5e-14
dbj|BAA75392.1| (AB013376) AppA [Bacillus halodurans] 79 1e-13
dbj|BAB06473.1| (AP001516) oligopeptide ABC transporter (oligope... 79 1e-13
gb|AAC46281.1| (AF000365) oligopeptide permease homolog AV [Borr... 76 1e-12
gi|11496929 oligopeptide ABC transporter, periplasmic oligopepti... 76 1e-12
pir||A72367 oligopeptide ABC transporter, periplasmic oligopepti... 76 1e-12
gi|10954940 Probable accA [Agrobacterium tumefaciens] >gi|649829... 76 1e-12
pir||A48650 agrocinopine utilization periplasmic binding protein... 76 2e-12
pir||B75332 extracellular solute-binding protein, family 5 - Dei... 75 3e-12
gb|AAG20588.1| (AE005129) dipeptide ABC transporter ATP-binding;... 75 4e-12
pir||S77182 oligopeptide transport system permease protein appA ... 72 2e-11
pir||S62194 hypothetical protein 4 - Methanosarcina barkeri (fra... 71 6e-11
dbj|BAB18102.1| (AB034969) cyclomaltodextrin binding protein [Th... 70 7e-11
>pir||C75118 dipeptide abc transporter, dipeptide-binding protein (dppa) PAB1871
- Pyrococcus abyssi (strain Orsay)
>gi|5458171|emb|CAB49660.1| (AJ248285) dipeptide ABC
transporter, dipeptide-binding protein (dppA)
[Pyrococcus abyssi]
Length = 705
Score = 1473 bits (3771), Expect = 0.0
Identities = 705/705 (100%), Positives = 705/705 (100%)
Query: 1 MNRALLSLLLVGVLVLGTVASGCIGGGTQTQSPTQTASPTQTQTTTQPQGVTKAILELGK 60
MNRALLSLLLVGVLVLGTVASGCIGGGTQTQSPTQTASPTQTQTTTQPQGVTKAILELGK
Sbjct: 1 MNRALLSLLLVGVLVLGTVASGCIGGGTQTQSPTQTASPTQTQTTTQPQGVTKAILELGK 60
Query: 61 VTVVDTGTSIVVVGPKGAEPTVKIPSGKKVIRITYVVDEQKTPSVKKLMEEGQGFGAINP 120
VTVVDTGTSIVVVGPKGAEPTVKIPSGKKVIRITYVVDEQKTPSVKKLMEEGQGFGAINP
Sbjct: 61 VTVVDTGTSIVVVGPKGAEPTVKIPSGKKVIRITYVVDEQKTPSVKKLMEEGQGFGAINP 120
Query: 121 AFFRDTNVDALVIAARRETNPEIRTEIFKALYILGNYYVPEVILGQNRQLRVYWSWVKGR 180
AFFRDTNVDALVIAARRETNPEIRTEIFKALYILGNYYVPEVILGQNRQLRVYWSWVKGR
Sbjct: 121 AFFRDTNVDALVIAARRETNPEIRTEIFKALYILGNYYVPEVILGQNRQLRVYWSWVKGR 180
Query: 181 YYHPTLAERYDLLWEDKNAPVVPTGVGDYNNDPETYVIATFGWPESFDPAWTYETFGWEI 240
YYHPTLAERYDLLWEDKNAPVVPTGVGDYNNDPETYVIATFGWPESFDPAWTYETFGWEI
Sbjct: 181 YYHPTLAERYDLLWEDKNAPVVPTGVGDYNNDPETYVIATFGWPESFDPAWTYETFGWEI 240
Query: 241 WHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDAT 300
WHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDAT
Sbjct: 241 WHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDAT 300
Query: 301 DVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSL 360
DVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSL
Sbjct: 301 DVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSL 360
Query: 361 QELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYG 420
QELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYG
Sbjct: 361 QELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYG 420
Query: 421 KNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGH 480
KNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGH
Sbjct: 421 KNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGH 480
Query: 481 KRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFI 540
KRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFI
Sbjct: 481 KRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFI 540
Query: 541 VFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNY 600
VFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNY
Sbjct: 541 VFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNY 600
Query: 601 NIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVY 660
NIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVY
Sbjct: 601 NIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVY 660
Query: 661 LSKTEKGDYDVYVVGWVPDYLDSDNWVGPFLYGATEFKEINIETS 705
LSKTEKGDYDVYVVGWVPDYLDSDNWVGPFLYGATEFKEINIETS
Sbjct: 661 LSKTEKGDYDVYVVGWVPDYLDSDNWVGPFLYGATEFKEINIETS 705
>pir||C71014 hypothetical protein PH1409 - Pyrococcus horikoshii
>gi|3257832|dbj|BAA30515.1| (AP000006) 721aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 721
Score = 1359 bits (3480), Expect = 0.0
Identities = 647/720 (89%), Positives = 678/720 (93%), Gaps = 15/720 (2%)
Query: 1 MNRALLSLLLVGVLVLGTVASGCIGGGTQTQSPTQTASPTQTQTTTQ------------- 47
MNRALLSLLLVGVLVLGT+ASGCIGGGTQTQSPTQT SPTQTQ+ TQ
Sbjct: 1 MNRALLSLLLVGVLVLGTMASGCIGGGTQTQSPTQTQSPTQTQSPTQTGSPTQTQSPTQT 60
Query: 48 --PQGVTKAILELGKVTVVDTGTSIVVVGPKGAEPTVKIPSGKKVIRITYVVDEQKTPSV 105
PQGVTKAILEL KVTVVDTGT+IVVVGPKGA+P V+IPSGKKVI+ITY VDE TPSV
Sbjct: 61 QAPQGVTKAILELDKVTVVDTGTAIVVVGPKGAQPKVQIPSGKKVIKITYEVDEANTPSV 120
Query: 106 KKLMEEGQGFGAINPAFFRDTNVDALVIAARRETNPEIRTEIFKALYILGNYYVPEVILG 165
KKLMEEGQGFGAI+PAFFRDTNVDALVIAARRETNPEIRTEIFKALYILGNYY+PEVILG
Sbjct: 121 KKLMEEGQGFGAIDPAFFRDTNVDALVIAARRETNPEIRTEIFKALYILGNYYIPEVILG 180
Query: 166 QNRQLRVYWSWVKGRYYHPTLAERYDLLWEDKNAPVVPTGVGDYNNDPETYVIATFGWPE 225
QNRQLRVYW WVKGRYYHPTLAERYDLLWEDKNAPVV TG+GDY NDPETYVIATFGWPE
Sbjct: 181 QNRQLRVYWDWVKGRYYHPTLAERYDLLWEDKNAPVVDTGIGDYKNDPETYVIATFGWPE 240
Query: 226 SFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGGVK 285
SFDPAWTYETFGWEIWHEIGDTLVTYWKE TKEV+PDLAVAWAHNKEGTEWYFVIRGGVK
Sbjct: 241 SFDPAWTYETFGWEIWHEIGDTLVTYWKEETKEVTPDLAVAWAHNKEGTEWYFVIRGGVK 300
Query: 286 AYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKSHP 345
AYDPWH KTYPIDATDVLF+FWRVARLGHSVSWMV TFMNVSASQALTE+EFNEYLKSHP
Sbjct: 301 AYDPWHGKTYPIDATDVLFSFWRVARLGHSVSWMVTTFMNVSASQALTEDEFNEYLKSHP 360
Query: 346 LVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPMEYL 405
L+AEYHGKT EVKSLQELL+FFGYKG+TAGVFKLVLPHPYAAILNVVADPFLSVVPMEYL
Sbjct: 361 LIAEYHGKTAEVKSLQELLNFFGYKGKTAGVFKLVLPHPYAAILNVVADPFLSVVPMEYL 420
Query: 406 LGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVL 465
LGDKYEEALKAS+YGK PDAWK YVQKG+ DATHQLMHKYPVGTGPFY+KDYQENSYIVL
Sbjct: 421 LGDKYEEALKASDYGKKPDAWKAYVQKGSTDATHQLMHKYPVGTGPFYIKDYQENSYIVL 480
Query: 466 EYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNYE 525
EYNPYYWNAT NPGHKRVIYIINSDAV+RVQL TGTADVAAIPTDKIEDVKG T +NY+
Sbjct: 481 EYNPYYWNATSNPGHKRVIYIINSDAVSRVQLFLTGTADVAAIPTDKIEDVKGKTLNNYK 540
Query: 526 IIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPK 585
++VKTDILLPVLTFIVFNTQKEPF++VKVRQALAYAIPY+QIAKVVYN LLE NWGPIPK
Sbjct: 541 VVVKTDILLPVLTFIVFNTQKEPFDNVKVRQALAYAIPYEQIAKVVYNGLLERNWGPIPK 600
Query: 586 PWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQ 645
PWPGYTEYGIIKY+YNIAKAKQMLQEAGIDPSKYSIKLIYNAGN+ REKIMTLIQNIWSQ
Sbjct: 601 PWPGYTEYGIIKYDYNIAKAKQMLQEAGIDPSKYSIKLIYNAGNTNREKIMTLIQNIWSQ 660
Query: 646 LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFLYGATEFKEINIETS 705
LGF+VTVESYEWPVYLSKTE GDYDVYVVGWVPDYLDSDNWVGPFLYGAT+FKE+NIE S
Sbjct: 661 LGFQVTVESYEWPVYLSKTEHGDYDVYVVGWVPDYLDSDNWVGPFLYGATKFKELNIEVS 720
>pir||E72616 hypothetical protein APE1390 - Aeropyrum pernix (strain K1)
>gi|5105073|dbj|BAA80387.1| (AP000061) 752aa long
hypothetical protein [Aeropyrum pernix]
Length = 752
Score = 753 bits (1922), Expect = 0.0
Identities = 372/733 (50%), Positives = 493/733 (66%), Gaps = 36/733 (4%)
Query: 2 NRALLSLLLVGVLVLGTVASGCIGGGT----QTQSPTQTASP---------TQTQTTTQP 48
+R LL V V+++ A +GGG SPT+T +P T+T T TQP
Sbjct: 9 DRRLLIAGAVVVVIVILAAVYLMGGGEGAPETVTSPTETTTPAATTPTETGTETPTETQP 68
Query: 49 QGVTKAIL---ELGKVTVVDTGTSIVVVGPKGAEPTVKIPSGKKVIRITYVVDEQKTPSV 105
T A E + V++T + VVVGP GA P GK VI + + VDE+ T
Sbjct: 69 AQTTPAETTTPEGPQAMVIETSKAFVVVGPVGAYVPDFDPKGKPVIAVKFQVDEENT--- 125
Query: 106 KKLMEEGQGFGAINPAFFRDTNVDALVIAARRETNPEIRTEIFKALYILGNYYVPEVILG 165
K +EE F INPAF+R+ DAL++ R+ +P IR +++A+Y L N VP + LG
Sbjct: 126 -KPVEESVSFVDINPAFYRNEYADALIMVGRKSADPFIREAVYEAVYKLSNEEVPILWLG 184
Query: 166 QNRQLRVYWSWVKGRYYHPTLAERYDLLWEDKNAPVVPTGVGDYNNDPETYVIATFGWPE 225
Q + + VYWSWVKG YYHPTL R+DL+ ED NAPVV G G Y+N P T+V TFGWP+
Sbjct: 185 QYKVVFVYWSWVKGLYYHPTLDIRFDLISEDPNAPVVDLGFGGYSNGPNTWVDVTFGWPD 244
Query: 226 SFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGGVK 285
+FDPA YETFGW IWH IG TLVT+WK+ T E++P+LAVAWAHN++ TEWYFVIRGGVK
Sbjct: 245 TFDPAADYETFGWHIWHNIGQTLVTFWKDETTELTPELAVAWAHNEDSTEWYFVIRGGVK 304
Query: 286 AYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKSHP 345
A+D W++KTY + A DVLFT WR+ARL SWM+ F++V+ SQ LTEEEFN+ L
Sbjct: 305 AFDNWNNKTYDVTAVDVLFTIWRIARLSLDPSWMITEFVDVNNSQVLTEEEFNQLLGQGG 364
Query: 346 LVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPMEYL 405
+ A Y G + EVKSL ELL FGY G TAGV K+ L +PYA IL++ ADPF SV+PM+Y+
Sbjct: 365 IYASYGGFSGEVKSLDELLQAFGYSGGTAGVVKIKLYYPYAPILSIFADPFTSVIPMKYI 424
Query: 406 ------LGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQE 459
L KYEEAL+ASNYGKNP AW+ Y+ G N+ +H L+H+ P+ TGP+YVKDY+E
Sbjct: 425 FDNVEELQGKYEEALEASNYGKNPAAWEAYIGTGENEPSHILLHQKPIATGPYYVKDYKE 484
Query: 460 NSYIVLEYNPYYWN--------ATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTD 511
SYI+LEYNPYYWN D P H+ I++IN DAV+R++ + +G AD AIP D
Sbjct: 485 GSYIILEYNPYYWNKELWQDLYGQDKPQHELAIFLINDDAVSRIETMKSGQADTGAIPLD 544
Query: 512 KIEDVKGVTKD--NYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAK 569
++ED+KG + N++IIV+ L PV+ FIV N KEPFN+ KVRQAL YAIP+DQI
Sbjct: 545 RLEDIKGYALEGTNFQIIVEEKGLSPVIVFIVLNAMKEPFNNTKVRQALMYAIPFDQIKT 604
Query: 570 VVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGN 629
VY +E G +P + G+ + + +Y +NI KA+++++E+GI+PS Y+IK+ YN GN
Sbjct: 605 SVYAGYIERLNGVLPAGFLGHNDDIVTQYEFNIVKARELIKESGINPSDYTIKIWYNKGN 664
Query: 630 SQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGP 689
+QREK+ +++ IW LGF V VE EWP LS+TEKGD+DV++VGW PDYLD DN+ GP
Sbjct: 665 TQREKVANMLKTIWGNLGFNVVVEPLEWPTLLSRTEKGDFDVWIVGWAPDYLDPDNYAGP 724
Query: 690 FLYGATEFKEINI 702
YG T+F +++
Sbjct: 725 LFYGGTKFTVLDV 737
>pir||G72720 probable oligopeptide-binding protein oppA APE0304 - Aeropyrum
pernix (strain K1) >gi|5103943|dbj|BAA79259.1|
(AP000059) 802aa long hypothetical oligopeptide-binding
protein oppA [Aeropyrum pernix]
Length = 802
Score = 149 bits (372), Expect = 1e-34
Identities = 140/516 (27%), Positives = 225/516 (43%), Gaps = 100/516 (19%)
Query: 195 EDKNAPVVPTGVGDYNNDPETYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKE 254
E+K P + P+T ++A G P+ DPA+ ++T EI + + LV + +
Sbjct: 262 EEKKGPAIQL------KHPDTIIVARIGEPQGLDPAFAHDTASAEIIDNVYERLV-WTTK 314
Query: 255 NTKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARL-- 312
N KE+ P LA W GT + F IR GVK ++ + A DV ++F R+ L
Sbjct: 315 NFKEIKPWLAERWEIKDNGTTYIFYIRKGVKFHNGEE-----LTAYDVEYSFKRLLVLDL 369
Query: 313 --GHSVSWMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYK 370
GH +K F+ + E + ++ ++ + +Y
Sbjct: 370 PQGHVRQ--IKPFL-------IDEWDPDQIDQAIRAIDKY-------------------- 400
Query: 371 GETAGVFKLVLPHPYAAILNVVADPFLSVV-----PMEYLLGDKYEEALKASNYGKNPDA 425
VFKL P+A L ++A + V+ +E+ GD ++ +L S + K
Sbjct: 401 ---TVVFKL--KKPFAPFLRILASDYAFVIINKKWAIEH--GD-WDPSLPKSEWSKFRGK 452
Query: 426 WKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIY 485
DY+ + P+GTGP+ + ++ IVLE YW KRV+
Sbjct: 453 INDYIMRN------------PMGTGPYKMVEWVPGQRIVLERFEDYWQGPAPT--KRVVI 498
Query: 486 IINSDAVARVQLLTTGTADVAAIPTD---KIEDVKGVTKDNYEIIVKTDILLPVLTFIVF 542
+ + R+ +L G D+A IP ++E+V G+T + T V+ FI F
Sbjct: 499 MFVPELSTRLLMLKNGDVDIADIPVSYKSQVENVPGIT-------IFTGAATNVVEFIQF 551
Query: 543 N--TQKEP---------FNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYT 591
N K P F DV VR+A AYA PY++ + Y L +P WPGY
Sbjct: 552 NFNISKIPEGDTIWPDFFTDVNVRKAFAYAFPYEEFIEKAYQGLAIRARACVPPGWPGYV 611
Query: 592 EYGIIKYNYNIAKAKQMLQEA---GIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLG- 647
E Y Y+ KA + ++A + + I YNAGN QR + L+ ++
Sbjct: 612 E--AYNYEYDPEKAAEYFKKAWGGRVWEEGFVITAFYNAGNEQRRIALELLAESLQKINP 669
Query: 648 -FKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLD 682
FK+ V++ +WPVYL K E + ++ +G +YLD
Sbjct: 670 KFKLRVQALDWPVYLEKMENFELPLFAIGDWINYLD 705
>pir||H83083 probable binding protein component of ABC transporter PA4497
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950736|gb|AAG07885.1|AE004863_5 (AE004863) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 532
Score = 142 bits (354), Expect = 1e-32
Identities = 121/481 (25%), Positives = 205/481 (42%), Gaps = 71/481 (14%)
Query: 213 PETYVIATFGWPESFDPAWTYETFGWEIW-HEIGDTLVTYWKENTKEVSPDLAVAWAHNK 271
P+T + T PE FDPA + ++ H + + L + + V P LA +W +
Sbjct: 26 PKTLAVCTEAAPEGFDPARYTSGYTFDASAHPLYNALAAF-APGSATVIPALAESWDVSA 84
Query: 272 EGTEWYFVIRGGVKAYDPWHDK-TYPIDATDVLFTFWRVARLGHSVSWMVKT-FMNVSAS 329
+G + F +R GVK + + K T DA DVLF+F R+ H + + + A
Sbjct: 85 DGLVYTFRLRQGVKFHSTDYFKPTREFDADDVLFSFQRMLDPQHPAHDLSPSGYPYADAM 144
Query: 330 QALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAIL 389
Q E E + H + + VL HP A L
Sbjct: 145 QLRDIIERIEKIDEHQV-------------------------------RFVLKHPEAPFL 173
Query: 390 NVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGT 449
+A PF S++ EY + +G D ++ P+GT
Sbjct: 174 ADLAMPFGSILSAEYA---------------------GQLIARGKGDE----LNSKPIGT 208
Query: 450 GPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIP 509
GPF Y++++ + NP YW P ++ I D RVQ L +A P
Sbjct: 209 GPFVFTRYRKDAQVRYAANPDYWKG--KPAIDHLVLAITLDPNVRVQRLRRNECQIALTP 266
Query: 510 TDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAK 569
K EDV + +D +++ + + + NT+ EPF+D +VR+A+A K
Sbjct: 267 --KPEDVAALRQDPQLTVLEEAAM--ITSHAAINTRHEPFDDPRVRRAIAMGFNKSSYLK 322
Query: 570 VVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGN 629
+V+ + P GP P GY + I + Y+ +AK +L+EAG+ P + L + G+
Sbjct: 323 IVFGDQARPAIGPYPPMLLGYDD-SIRDWPYDPERAKALLKEAGVTPDT-PLNLYISTGS 380
Query: 630 S---QREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNW 686
++ LIQ+ + +G +V + +EW + +T+ G++D+ + W+ D D DN+
Sbjct: 381 GPGGNPARVAQLIQSDLAAIGIRVNIRQFEWGEMVKRTKAGEHDMMLYSWIGDNGDPDNF 440
Query: 687 V 687
+
Sbjct: 441 L 441
>pdb|1DPE| Dipeptide-Binding Protein
Length = 507
Score = 141 bits (353), Expect = 2e-32
Identities = 134/500 (26%), Positives = 215/500 (42%), Gaps = 96/500 (19%)
Query: 214 ETYVIATFGWPESFDP-----AWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWA 268
+T V + G PE F+P TY+ +++ + + +K T EV P LA W
Sbjct: 1 KTLVYCSEGSPEGFNPQLFISGTTYDASSVPLYNRLVE-----FKIGTTEVIPGLAEKWE 55
Query: 269 HNKEGTEWYFVIRGGVKAYDPWHDK-----TYPIDATDVLFTFWRVARLGHSVSWMVKTF 323
+++G + F +R GVK WHD T ++A DV+F+F R K
Sbjct: 56 VSEDGKTYTFHLRKGVK----WHDNKEFKPTRELNADDVVFSFDRQ-----------KNA 100
Query: 324 MNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPH 383
N + E+ E + L++E VK + + + VL
Sbjct: 101 QNPYHKVSGGSYEYFEGMGLPELISE-------VKKVDD------------NTVQFVLTR 141
Query: 384 PYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMH 443
P A L +A F S++ EY + +KA T + +
Sbjct: 142 PEAPFLADLAMDFASILSKEYA-----DAMMKAG--------------------TPEKLD 176
Query: 444 KYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTA 503
P+GTGPF ++ YQ++S I + YW P +++ I DA R L
Sbjct: 177 LNPIGTGPFQLQQYQKDSRIRYKAFDGYWGT--KPQIDTLVFSITPDASVRYAKLQKNEC 234
Query: 504 DVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLT--FIVFNTQKEPFNDVKVRQALAYA 561
V P D+ + +D +++ +P L ++ +N QK+P +DVKVRQAL YA
Sbjct: 235 QVMPYPNPA--DIARMKQDKSINLME----MPGLNVGYLSYNVQKKPLDDVKVRQALTYA 288
Query: 562 IPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSI 621
+ D I K VY IP GY + + Y Y+ KAK +L+EAG++ +SI
Sbjct: 289 VNKDAIIKAVYQGAGVSAKNLIPPTMWGYND-DVQDYTYDPEKAKALLKEAGLEKG-FSI 346
Query: 622 KL----IYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWV 677
L + N ++ +IQ W+++G + + +YEW YL + + G++ ++GW
Sbjct: 347 DLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWT 406
Query: 678 PDYLDSDNWVGPFLYGATEF 697
D D DN + ATEF
Sbjct: 407 GDNGDPDN------FFATEF 420
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
>gi|1311041|pdb|1DPP|C Chain C, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
>gi|1311043|pdb|1DPP|E Chain E, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
>gi|1311045|pdb|1DPP|G Chain G, Dipeptide Binding
Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 141 bits (351), Expect = 3e-32
Identities = 130/489 (26%), Positives = 211/489 (42%), Gaps = 90/489 (18%)
Query: 214 ETYVIATFGWPESFDP-----AWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWA 268
+T V + G PE F+P TY+ +++ + + +K T EV P LA W
Sbjct: 1 KTLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNRLVE-----FKIGTTEVIPGLAEKWE 55
Query: 269 HNKEGTEWYFVIRGGVKAYDPWHDK-----TYPIDATDVLFTFWRVARLGHSVSWMVKTF 323
+++G + F +R GVK WHD T ++A DV+F+F R K
Sbjct: 56 VSEDGKTYTFHLRKGVK----WHDNKEFKPTRELNADDVVFSFDRQ-----------KNA 100
Query: 324 MNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPH 383
N + E+ E + L++E VK + + + VL
Sbjct: 101 QNPYHKVSGGSYEYFEGMGLPELISE-------VKKVDD------------NTVQFVLTR 141
Query: 384 PYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMH 443
P A L +A F S++ EY + +KA T + +
Sbjct: 142 PEAPFLADLAMDFASILSKEYA-----DAMMKAG--------------------TPEKLD 176
Query: 444 KYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTA 503
P+GTGPF ++ YQ++S I + YW P +++ I DA R L
Sbjct: 177 LNPIGTGPFQLQQYQKDSRIRYKAFDGYWGT--KPQIDTLVFSITPDASVRYAKLQKNEC 234
Query: 504 DVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLT--FIVFNTQKEPFNDVKVRQALAYA 561
V P D+ + +D +++ +P L ++ +N QK+P +DVKVRQAL YA
Sbjct: 235 QVMPYPNPA--DIARMKQDKSINLME----MPGLNVGYLSYNVQKKPLDDVKVRQALTYA 288
Query: 562 IPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSI 621
+ D I K VY IP GY + + Y Y+ KAK +L+EAG++ +SI
Sbjct: 289 VNKDAIIKAVYQGAGVSAKNLIPPTMWGYND-DVQDYTYDPEKAKALLKEAGLEKG-FSI 346
Query: 622 KL----IYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWV 677
L + N ++ +IQ W+++G + + +YEW YL + + G++ ++GW
Sbjct: 347 DLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWT 406
Query: 678 PDYLDSDNW 686
D D DN+
Sbjct: 407 GDNGDPDNF 415
>sp|P23847|DPPA_ECOLI PERIPLASMIC DIPEPTIDE TRANSPORT PROTEIN PRECURSOR
(DIPEPTIDE-BINDING PROTEIN) (DBP) >gi|95763|pir||A39194
periplasmic dipeptide transport protein precursor dppA -
Escherichia coli >gi|42475|emb|CAA41090.1| (X58051)
dipeptide binding protein (DBP) [Escherichia coli]
>gi|145797|gb|AAA23707.1| (M35045) dipeptide transporter
protein [Escherichia coli] >gi|349225|gb|AAA23702.1|
(L08399) dipeptide-binding protein [Escherichia coli]
>gi|466683|gb|AAB18522.1| (U00039) dppA [Escherichia
coli] >gi|1789966|gb|AAC76569.1| (AE000431) dipeptide
transport protein [Escherichia coli K12]
Length = 535
Score = 141 bits (351), Expect = 3e-32
Identities = 130/489 (26%), Positives = 211/489 (42%), Gaps = 90/489 (18%)
Query: 214 ETYVIATFGWPESFDP-----AWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWA 268
+T V + G PE F+P TY+ +++ + + +K T EV P LA W
Sbjct: 29 KTLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNRLVE-----FKIGTTEVIPGLAEKWE 83
Query: 269 HNKEGTEWYFVIRGGVKAYDPWHDK-----TYPIDATDVLFTFWRVARLGHSVSWMVKTF 323
+++G + F +R GVK WHD T ++A DV+F+F R K
Sbjct: 84 VSEDGKTYTFHLRKGVK----WHDNKEFKPTRELNADDVVFSFDRQ-----------KNA 128
Query: 324 MNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPH 383
N + E+ E + L++E VK + + + VL
Sbjct: 129 QNPYHKVSGGSYEYFEGMGLPELISE-------VKKVDD------------NTVQFVLTR 169
Query: 384 PYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMH 443
P A L +A F S++ EY + +KA T + +
Sbjct: 170 PEAPFLADLAMDFASILSKEYA-----DAMMKAG--------------------TPEKLD 204
Query: 444 KYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTA 503
P+GTGPF ++ YQ++S I + YW P +++ I DA R L
Sbjct: 205 LNPIGTGPFQLQQYQKDSRIRYKAFDGYWGT--KPQIDTLVFSITPDASVRYAKLQKNEC 262
Query: 504 DVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLT--FIVFNTQKEPFNDVKVRQALAYA 561
V P D+ + +D +++ +P L ++ +N QK+P +DVKVRQAL YA
Sbjct: 263 QVMPYPNPA--DIARMKQDKSINLME----MPGLNVGYLSYNVQKKPLDDVKVRQALTYA 316
Query: 562 IPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSI 621
+ D I K VY IP GY + + Y Y+ KAK +L+EAG++ +SI
Sbjct: 317 VNKDAIIKAVYQGAGVSAKNLIPPTMWGYND-DVQDYTYDPEKAKALLKEAGLEKG-FSI 374
Query: 622 KL----IYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWV 677
L + N ++ +IQ W+++G + + +YEW YL + + G++ ++GW
Sbjct: 375 DLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWT 434
Query: 678 PDYLDSDNW 686
D D DN+
Sbjct: 435 GDNGDPDNF 443
>pir||A43832 heme-binding protein A precursor - Haemophilus influenzae (type b)
>gi|11277226|pir||T45066 heme-binding lipoprotein
precursor hbpA [validated] - Haemophilus influenzae
>gi|148894|gb|AAA24962.1| (M84028) heme-binding
lipoprotein [Haemophilus influenzae]
Length = 547
Score = 136 bits (338), Expect = 1e-30
Identities = 128/483 (26%), Positives = 197/483 (40%), Gaps = 70/483 (14%)
Query: 215 TYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGT 274
T+V T P F PA E + + + +K+ + ++ P LA +W + +G
Sbjct: 41 TFVYCTANSPLGFSPALIIEGTSYNASSQQVYNRLVEFKKGSTDIEPALAESWEISDDGL 100
Query: 275 EWYFVIRGGVKAYDPWH-DKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQA-- 331
+ F +R GVK + T +A DV+F+F R H + NVS
Sbjct: 101 SYTFHLRKGVKFHTTKEFTPTRDFNADDVVFSFQRQLDPNHP-------YHNVSKGTYPY 153
Query: 332 LTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNV 391
+F E LKS V + ++ L A L
Sbjct: 154 FKAMKFPELLKSVEKVDD-------------------------NTIRITLNKNDATFLAS 188
Query: 392 VADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGP 451
+ F+S+ EY + LKA + + PVGTGP
Sbjct: 189 LGMDFISIYSAEYA-----DSMLKAGK--------------------PETLDSRPVGTGP 223
Query: 452 FYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTD 511
F DY+ + I N YW P + VI I+ DA R L GT D+ P
Sbjct: 224 FVFVDYKTDQAIQYVANENYWKGR-TPLDRLVISIV-PDATTRYAKLQAGTCDLILFPN- 280
Query: 512 KIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVV 571
+ D+ + D +++ L + +I FNT+K PF++VKVRQAL YA+ I + V
Sbjct: 281 -VADLAKMKTDPKVQLLEQKGLN--VAYIAFNTEKAPFDNVKVRQALNYAVDKKAIIEAV 337
Query: 572 YNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGID---PSKYSIKLIYNAG 628
Y P+P Y + I Y Y+ KAKQ+L EAG + + I+ + A
Sbjct: 338 YQGAGISAKNPLPPTIWSYNDE-IQDYPYDPEKAKQLLVEAGYPNGFETDFWIQPVIRAS 396
Query: 629 NSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVG 688
N +++ LI W+++G K +YEW Y + ++G+ + GW D D DN++
Sbjct: 397 NPNPKRMAELIMADWAKIGVKTNPVTYEWADYRKRAKEGELTAGIFGWSGDNGDPDNFLS 456
Query: 689 PFL 691
P L
Sbjct: 457 PLL 459
>pir||G83083 probable binding protein component of ABC transporter PA4496
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950735|gb|AAG07884.1|AE004863_4 (AE004863) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 537
Score = 135 bits (337), Expect = 1e-30
Identities = 131/492 (26%), Positives = 209/492 (41%), Gaps = 88/492 (17%)
Query: 217 VIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEW 276
+ + G P FDPA ++ E +T ++ +V P LA +W + +G +
Sbjct: 33 IFCSEGSPAGFDPAQYTTGTDFDAAAETVFNRLTQFERGGTKVLPGLAESWDVSDDGKTY 92
Query: 277 YFVIRGGVKAYDPWHDK-TYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEE 335
F +R GVK + + K T +A DVLFTF R+ H
Sbjct: 93 TFHLRKGVKFHSTDYFKPTREFNADDVLFTFERMLDKDHP-------------------- 132
Query: 336 EFNEYLKSHPLVAEYH---GKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVV 392
+ K++P Y G + +++L + K L AA + +
Sbjct: 133 ----FRKAYPTEFPYFTDMGLDKNIARVEKLDEH---------TVKFTLNEVDAAFIQNL 179
Query: 393 ADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPF 452
A PF S+ EY A + GK D +++ P+GTGPF
Sbjct: 180 AMPFPSIQSAEY--------AAQLLKQGKASD-----------------INQKPIGTGPF 214
Query: 453 YVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDK 512
YQ+++ I + N YW D +I+ IN+DA R Q L G + P +
Sbjct: 215 VFSRYQKDAQIRFKGNKDYWKP-DEVKVDNLIFAINTDASVRAQKLKAGECQITLNP--R 271
Query: 513 IEDVKGVTKDNYEIIVKTDILLPV-----LTFIVFNTQKEPFNDVKVRQALAYAIPYDQI 567
D+ + KD ++ LP L +I +N +PF+ ++VRQAL A+ I
Sbjct: 272 PADLDALKKD-------PNLNLPSQAGFNLGYIAYNVTHKPFDKLEVRQALDMAVNKKAI 324
Query: 568 AKVVYNNL--LEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKL-- 623
VY L N P P W Y E I Y+ AKA+++L++AG+ I L
Sbjct: 325 IDAVYQGAGQLASNGMP-PTQW-SYDET-IKDAPYDPAKARELLKKAGVAEGT-EITLWA 380
Query: 624 --IYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYL 681
+ N + + ++QN W+++G K + +YEW Y+ + + G++D ++GW D
Sbjct: 381 MPVQRPYNPNAKLMAEMLQNDWAKIGIKAKIVTYEWGEYIKRAKGGEHDAMLIGWSGDNG 440
Query: 682 DSDNWVGPFLYG 693
D DNW+G LYG
Sbjct: 441 DPDNWLGT-LYG 451
>pir||D64098 heme-binding protein A precursor - Haemophilus influenzae
>gi|1573869|gb|AAC22512.1| (U32767) heme-binding
lipoprotein (dppA) [Haemophilus influenzae Rd]
Length = 549
Score = 134 bits (335), Expect = 2e-30
Identities = 127/483 (26%), Positives = 197/483 (40%), Gaps = 70/483 (14%)
Query: 215 TYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGT 274
T+V T P F PA E + + + +K+ + ++ P LA +W + +G
Sbjct: 43 TFVYCTAKAPLGFSPALIIEGTSYNASSQQVYNRLVEFKKGSTDIEPALAESWEISDDGL 102
Query: 275 EWYFVIRGGVKAYDPWH-DKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQA-- 331
+ F +R GVK + T +A DV+F+F R H + NVS
Sbjct: 103 SYTFHLRKGVKFHTTKEFTPTRDFNADDVVFSFQRQLDPNHP-------YHNVSKGTYPY 155
Query: 332 LTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNV 391
+F E LKS V + ++ L A L
Sbjct: 156 FKAMKFPELLKSVEKVDD-------------------------NTIRITLNKTDATFLAS 190
Query: 392 VADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGP 451
+ F+S+ EY + LKA + + PVGTGP
Sbjct: 191 LGMDFISIYSAEYA-----DSMLKAGK--------------------PETLDSRPVGTGP 225
Query: 452 FYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTD 511
F DY+ + I + YW P + VI I+ DA R L GT D+ P
Sbjct: 226 FVFVDYKTDQAIQYVAHENYWKGR-TPLDRLVISIV-PDATTRYAKLQAGTCDLILFPN- 282
Query: 512 KIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVV 571
+ D+ + D +++ L + +I FNT+K PF++VKVRQAL YA+ I + V
Sbjct: 283 -VADLAKMKTDPKVQLLEQKGLN--VAYIAFNTEKAPFDNVKVRQALNYAVDKKAIIEAV 339
Query: 572 YNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGID---PSKYSIKLIYNAG 628
Y P+P Y + I Y Y+ KAKQ+L EAG + + I+ + A
Sbjct: 340 YQGAGTSAKNPLPPTIWSYNDE-IQDYPYDPEKAKQLLAEAGYPNGFETDFWIQPVIRAS 398
Query: 629 NSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVG 688
N +++ LI W+++G K +YEW Y + ++G+ + GW D D DN++
Sbjct: 399 NPNPKRMAELIMADWAKIGVKTNPVTYEWADYRKRAKEGELTAGIFGWSGDNGDPDNFLS 458
Query: 689 PFL 691
P L
Sbjct: 459 PLL 461
>sp|P33950|HBPA_HAEIN HEME-BINDING PROTEIN A PRECURSOR (HEMIN-BINDING LIPOPROTEIN)
Length = 547
Score = 134 bits (335), Expect = 2e-30
Identities = 127/483 (26%), Positives = 197/483 (40%), Gaps = 70/483 (14%)
Query: 215 TYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGT 274
T+V T P F PA E + + + +K+ + ++ P LA +W + +G
Sbjct: 41 TFVYCTAKAPLGFSPALIIEGTSYNASSQQVYNRLVEFKKGSTDIEPALAESWEISDDGL 100
Query: 275 EWYFVIRGGVKAYDPWH-DKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQA-- 331
+ F +R GVK + T +A DV+F+F R H + NVS
Sbjct: 101 SYTFHLRKGVKFHTTKEFTPTRDFNADDVVFSFQRQLDPNHP-------YHNVSKGTYPY 153
Query: 332 LTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNV 391
+F E LKS V + ++ L A L
Sbjct: 154 FKAMKFPELLKSVEKVDD-------------------------NTIRITLNKTDATFLAS 188
Query: 392 VADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGP 451
+ F+S+ EY + LKA + + PVGTGP
Sbjct: 189 LGMDFISIYSAEYA-----DSMLKAGK--------------------PETLDSRPVGTGP 223
Query: 452 FYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTD 511
F DY+ + I + YW P + VI I+ DA R L GT D+ P
Sbjct: 224 FVFVDYKTDQAIQYVAHENYWKGR-TPLDRLVISIV-PDATTRYAKLQAGTCDLILFPN- 280
Query: 512 KIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVV 571
+ D+ + D +++ L + +I FNT+K PF++VKVRQAL YA+ I + V
Sbjct: 281 -VADLAKMKTDPKVQLLEQKGLN--VAYIAFNTEKAPFDNVKVRQALNYAVDKKAIIEAV 337
Query: 572 YNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGID---PSKYSIKLIYNAG 628
Y P+P Y + I Y Y+ KAKQ+L EAG + + I+ + A
Sbjct: 338 YQGAGTSAKNPLPPTIWSYNDE-IQDYPYDPEKAKQLLAEAGYPNGFETDFWIQPVIRAS 396
Query: 629 NSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVG 688
N +++ LI W+++G K +YEW Y + ++G+ + GW D D DN++
Sbjct: 397 NPNPKRMAELIMADWAKIGVKTNPVTYEWADYRKRAKEGELTAGIFGWSGDNGDPDNFLS 456
Query: 689 PFL 691
P L
Sbjct: 457 PLL 459
>dbj|BAB07363.1| (AP001519) dipeptide ABC transporter (dipeptide-binding protein)
[Bacillus halodurans]
Length = 557
Score = 134 bits (333), Expect = 4e-30
Identities = 126/490 (25%), Positives = 218/490 (43%), Gaps = 78/490 (15%)
Query: 212 DPETYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNK 271
+ +T + A G S D A + + +I +TL+ + +++ E+ P LA +W ++
Sbjct: 53 EDQTLIFARGGDSVSLDYASVTDGESSRVTKQIFETLIEFERDSF-EIGPGLAHSWDMSE 111
Query: 272 EGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQA 331
+G + F + GV +HD T P +A V F R A H A
Sbjct: 112 DGLRYTFYLEEGVT----FHDGT-PFNAEAVKVNFERWADPDHPY--------------A 152
Query: 332 LTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFK---LVLPHPYAAI 388
+E +N Y T+ F G+KG+ V + +V + +
Sbjct: 153 FVDEGYN-----------YSVYGTQ---------FGGFKGDPGHVIEEINVVNEYEIEFV 192
Query: 389 LNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVG 448
L+ FL + M Y +P A+++Y GA +++ PVG
Sbjct: 193 LSEPLGSFLQNMGMSYFAMS-------------SPAAFEEY---GA------AINENPVG 230
Query: 449 TGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA-A 507
TGPF + + IVLE N YW P ++I+ + D AR+ L +G D+
Sbjct: 231 TGPFKFVSWTRDDSIVLEKNEEYWKE-GLPKLDKIIFQVIPDNSARLTALRSGQIDIMDG 289
Query: 508 IPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQI 567
+ D + V+G + IV + + ++ F+ +KEPF+D VRQA+ +AI D +
Sbjct: 290 LNPDDVAQVEGD-----DSIVLFERATNNIGYLGFHVEKEPFDDPLVRQAINHAIDKDSL 344
Query: 568 AKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKL---- 623
+YN L EP P+P + GY E I Y Y+ +A+++L EAG + + +L
Sbjct: 345 ITALYNGLAEPAKNPVPPGYLGYNE-AIDPYAYDPERARELLAEAGYEDG-FEFELWTMP 402
Query: 624 IYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDS 683
+ ++ IQ+ ++ +G +E+ +W YL +TEKG +D++++GW D
Sbjct: 403 VARPYMPDPQRAAEAIQSNFADVGITAKIETRDWATYLEETEKGAHDMFMLGWSGVNGDP 462
Query: 684 DNWVGPFLYG 693
D ++ L+G
Sbjct: 463 DYFLSNLLHG 472
>pir||D72373 hypothetical protein TM0460 - Thermotoga maritima (strain MSB8)
>gi|4980969|gb|AAD35545.1|AE001724_3 (AE001724)
oligopeptide ABC transporter, periplasmic oligo-peptide
binding protein, putative [Thermotoga maritima]
Length = 614
Score = 130 bits (324), Expect = 5e-29
Identities = 123/519 (23%), Positives = 221/519 (41%), Gaps = 60/519 (11%)
Query: 212 DPETYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNK 271
+P+T + AT G P++ DP + Y+T E+ + + + L+ Y E+ E P LA W
Sbjct: 22 NPDTIIDATIGEPDTLDPHFAYDTASGEVIYNVYENLIAYKGESLTEFEPRLAERWEILD 81
Query: 272 EGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVS--WMV-KTFMNVSA 328
+G + F IR GVK ++ + DV ++F R + WM+ + V +
Sbjct: 82 DGKTYKFYIRKGVKFHEGG-----DLTPEDVEYSFERGLIFDPTAGPMWMLWEALFGVDS 136
Query: 329 SQALTEEEFNE-----YLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPH 383
+ EE+ + + ++ + EY + +K + +D A VF LV
Sbjct: 137 LETFVEEKIGKPYSELFDENGEPLPEY--RDALIKIYTDYIDPAIEVEGDAVVFHLV--R 192
Query: 384 PYAAILNVVAD--PFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQL 441
P+A + ++A + +V+ E+ ++ + D W Y D+
Sbjct: 193 PFAPFMYILAQSASWSAVLDKEW--------CIEIGCWDGRADTWWKYHDIRKEDSP--- 241
Query: 442 MHKYPVGTGPF-YVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTT 500
++ GTGPF +V+ + ++LE N YW + KRVI + R +
Sbjct: 242 LYARMNGTGPFKFVEWDRAQQKVILERNDNYWR--EPAKIKRVIIWGIDEWSTRRAMFLQ 299
Query: 501 GTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEP------------ 548
G AD+ A+PT +E V+G K ++ L +N ++
Sbjct: 300 GDADICAVPTQYLEQVEG--KPGVTVVKGLPELAVTSLHFAWNVPEDSKYIGSGKLDGNG 357
Query: 549 -----FNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGI---IKYNY 600
F+D VR+A YA YD V L +P+ G+ E + ++
Sbjct: 358 IPPDFFSDENVRKAFIYAFDYDTFINEVLKGLGRKIPTDLPEGLLGFNEELLNDPDAPHF 417
Query: 601 NIAKAKQMLQEA---GIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLG--FKVTVESY 655
+I KA + ++A + + I L+YN GN R + +++ + FKV V
Sbjct: 418 DIVKATEYFKKAWNGEVWKKGFKITLLYNTGNEVRRQAAEMLKAYIEMINPKFKVEVRGV 477
Query: 656 EWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFLYGA 694
+WP YL T++G+ +++GW+ DY D N++ + + A
Sbjct: 478 QWPTYLDATKRGEVPAFIIGWLADYPDPHNFIFTYYHSA 516
>pir||B83082 probable binding protein component of ABC transporter PA4502
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950742|gb|AAG07890.1|AE004864_2 (AE004864) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 531
Score = 129 bits (322), Expect = 8e-29
Identities = 127/481 (26%), Positives = 204/481 (42%), Gaps = 70/481 (14%)
Query: 217 VIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEW 276
V+ T PE FD + E + ++ T EV P LA W + +G +
Sbjct: 27 VVCTEASPEGFDIVQYTGAVTADASAETVFNRLLAFRPGTTEVIPGLAERWDVSADGLSY 86
Query: 277 YFVIRGGVKAYDPWHDK-TYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEE 335
F +R GVK + + K T ++A DVL+TF R H W + A+
Sbjct: 87 TFHLRPGVKFHTTDYFKPTRSLNADDVLWTFQRALDPKHP--WHASALRGYAYFDAMG-- 142
Query: 336 EFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADP 395
E +KS V+ + EL + VL P A L +A P
Sbjct: 143 -MGELIKS-------------VEKVDEL------------TVRFVLNRPEAPFLRDMAMP 176
Query: 396 FLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVK 455
F S+ EY GD + L A G+ ++ P+GTGPF K
Sbjct: 177 FASIYSAEY--GD---QLLAAGKLGQ--------------------LNNQPIGTGPFVFK 211
Query: 456 DYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIED 515
Y +++ + NP Y+ P +++ I D R+Q + G V+ P K ED
Sbjct: 212 RYAKDAQVRYTANPDYY--AGKPPIDNLVFAITLDPNVRMQKVRAGECQVSLYP--KPED 267
Query: 516 VKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYN-N 574
V + +D + + D LL T+I NTQ +P +D +VRQA+ A+ + V+
Sbjct: 268 VPRLKQDPNLAVDEIDALLT--TYIAINTQHKPLDDPRVRQAINLALDKKAMLDAVFGPG 325
Query: 575 LLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQR-- 632
P GP P GY + I + ++ +A+ +L+EAG + + I L G S
Sbjct: 326 AASPAVGPYPPTLLGYN-HSIQDWPHDPERARALLKEAGAENLR--ITLFIRNGTSPTIP 382
Query: 633 --EKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPF 690
++Q ++ G ++T+ S EW L +++ G++D+ ++GW D D DN++ P
Sbjct: 383 NPALAAQMLQADLAKAGIQLTIRSLEWGELLKRSKAGEHDLSLLGWAGDNGDPDNFLSPN 442
Query: 691 L 691
L
Sbjct: 443 L 443
>pir||F71951 periplasmic dipeptide transport substrate-binding protein -
Helicobacter pylori (strain J99)
>gi|4154808|gb|AAD05864.1| (AE001465) PERIPLASMIC
DIPEPTIDE TRANSPORT SUBSTRATE-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 546
Score = 129 bits (320), Expect = 1e-28
Identities = 121/463 (26%), Positives = 196/463 (42%), Gaps = 67/463 (14%)
Query: 226 SFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGGVK 285
S DPA + + I DTLV + K T EV P LA +W + +G + F +R GV
Sbjct: 56 SMDPALVTDGESYVATGNIYDTLVQF-KYGTTEVEPALATSWEISPDGLVYTFHLRKGVY 114
Query: 286 AYDP-WHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKSH 344
+ + +K A DVLF+F R + ++ KS+
Sbjct: 115 FHQTKYWNKKVEFSAKDVLFSFER--------------------QMDKAKRYYSPGAKSY 154
Query: 345 PLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPMEY 404
E G + +KS++ L D+ + L P A L + FLS++
Sbjct: 155 KYW-EGMGMSHIIKSIEALDDY---------TIRFTLNGPEAPFLANLGMDFLSILS--- 201
Query: 405 LLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIV 464
KDY A + + K PVGTGPF + ++ I+
Sbjct: 202 ----------------------KDYADYLAQNNKKDELAKKPVGTGPFKFFLWNKDEKII 239
Query: 465 LEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNY 524
L N YW V I NS A L T ++ + + +V+ + K
Sbjct: 240 LVKNQDYWGPKAYLDKVVVRTIPNSSTRA----LALRTGEIMLMTGPNLNEVEQLEKLPN 295
Query: 525 EIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIP 584
++ ++ L + ++ NTQK+ FN+ VR A+ +AI D KV+Y + P P
Sbjct: 296 IVVDRSPGL--IANWLSLNTQKKYFNNPLVRLAINHAINVDDYIKVIYEGFAQKMVNPFP 353
Query: 585 KPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWS 644
GY Y I Y Y++ KAK++L++AG P+ + + + ++ K IQ +
Sbjct: 354 PTIWGYN-YNIKPYEYDLKKAKELLKQAGY-PNGFKTTIFTTS--TRNPKGAVFIQASLA 409
Query: 645 QLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWV 687
++G V +E YEW YL +T G++++ GW+ D D DN++
Sbjct: 410 KIGIDVKIEVYEWGAYLKRTGLGEHEMAFAGWMADIADPDNFL 452
>pir||B64557 dipeptide ABC transporter, periplasmic dipeptide-binding protein -
Helicobacter pylori (strain 26695)
>gi|2313396|gb|AAD07367.1| (AE000548) dipeptide ABC
transporter, periplasmic dipeptide-binding protein
(dppA) [Helicobacter pylori 26695]
Length = 549
Score = 126 bits (314), Expect = 7e-28
Identities = 132/517 (25%), Positives = 215/517 (41%), Gaps = 71/517 (13%)
Query: 176 WVKGRYYHPTLAERYDLLWEDKNAPVVPT----GVGDYNNDPETYVIATFGWPESFDPAW 231
+VKG ++ L + E NA + P+ V + V A S DPA
Sbjct: 5 FVKGLFFFLLLFGFFLKASESPNATLNPSKENVSVEEQKRFGGVLVFARGADGSSMDPAL 64
Query: 232 TYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDP-W 290
+ + I DTLV + + T EV P LA +W + +G + F +R GV + +
Sbjct: 65 VTDGESYVATGNIYDTLVQF-RYGTTEVEPALATSWDISPDGLVYTFHLRKGVYFHQTKY 123
Query: 291 HDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKSHPLVAEY 350
+K A DVLF+F R + ++ KS+ E
Sbjct: 124 WNKKVEFSAKDVLFSFER--------------------QMDKAKRYYSPGAKSYKYW-EG 162
Query: 351 HGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKY 410
G + +KS++ L D+ + L P A L + FLS++
Sbjct: 163 MGMSHIIKSIEALDDY---------TIRFTLNGPEAPFLANLGMDFLSILS--------- 204
Query: 411 EEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPY 470
KDY A + + K P+GTGPF + ++ I+L N
Sbjct: 205 ----------------KDYADYLAQNNKKDELAKKPIGTGPFKFFLWNKDEKIILLKNQD 248
Query: 471 YWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKT 530
YW V I NS A L T ++ + + +V+ + K ++ K+
Sbjct: 249 YWGPKAYLDKVVVRTIPNSSTRA----LALRTGEIMLMTGPNLNEVEQLEKVPNIVVDKS 304
Query: 531 DILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGY 590
LL +++ NTQK+ F++ VR A+ +AI D KV+Y + P P GY
Sbjct: 305 AGLLA--SWLSLNTQKKYFDNPLVRLAINHAINADDYIKVLYEGFAQKMVNPFPPTIWGY 362
Query: 591 TEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKV 650
Y I Y Y++ KAK++L++AG P+ + + A ++ K IQ +++G V
Sbjct: 363 N-YNIKPYEYDLKKAKELLKQAGY-PNGFKTTIFTTA--TRNPKGAVFIQASLAKIGIDV 418
Query: 651 TVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWV 687
+E YEW YL +T G++++ GW+ D D DN++
Sbjct: 419 KIEVYEWGAYLKRTGLGEHEMAFSGWMADIADPDNFL 455
>pir||C83084 probable binding protein component of ABC transporter PA4500
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950739|gb|AAG07888.1|AE004863_8 (AE004863) probable
binding protein component of ABC transporter
[Pseudomonas aeruginosa]
Length = 533
Score = 123 bits (305), Expect = 8e-27
Identities = 130/501 (25%), Positives = 208/501 (40%), Gaps = 72/501 (14%)
Query: 209 YNNDPETYVIATFGWPESFDPA-WTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAW 267
+++ V + G P FDPA +T T + + LV + + T+ + P LA +W
Sbjct: 21 FSHAASNLVFCSEGSPAGFDPAQYTTGTDYDATSVTLFNRLVQFERGGTRAI-PALAESW 79
Query: 268 AHNKEGTEWYFVIRGGVKAYDPWHDK-TYPIDATDVLFTFWRVARLGHSVSWMVKTFMNV 326
+G + F +R GVK + + K T +A DVLFTF R+
Sbjct: 80 DIGDDGKTYTFHLRKGVKFHSTDYFKPTREFNADDVLFTFQRMLD--------------- 124
Query: 327 SASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYA 386
K+HP Y TE ++ G A V KL H
Sbjct: 125 ---------------KNHPFRKAY---PTEFPYFTDM----GLDKNIARVEKLD-EHRVK 161
Query: 387 AILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYP 446
LN V F+ + M+ E A + GK Q +++ P
Sbjct: 162 FTLNEVDAAFIQNLAMDVASIQSAEYAGQLLEAGKP-----------------QQINQKP 204
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
+GTGPF + YQ+++ I + N YW D +I+ IN+DA R Q L G +
Sbjct: 205 IGTGPFILSRYQKDAQIRFKGNKDYWKPEDVK-IDNLIFSINTDAAVRAQKLKAGECQIT 263
Query: 507 AIPTDKIEDVKGVTKD-NYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYD 565
P + D+K + + N ++ + L +I +N +PF+ ++VRQAL A+
Sbjct: 264 LNP--RPADLKALQEAANLKVPSQPGFNLG---YIAYNVTHKPFDQLEVRQALDMAVNKQ 318
Query: 566 QIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKL-- 623
I VY + +P Y E I ++ AKA+++L++AG+ I L
Sbjct: 319 AIIDAVYQGAGQLAVNGMPPTQWSYDET-IKDAPFDPAKARELLKKAGVAEGT-EITLWA 376
Query: 624 --IYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYL 681
+ N + + +IQ W+++G K + SYEW Y+ + G++D + GW D
Sbjct: 377 MPVQRPYNPNAKLMAEMIQADWAKIGIKARIVSYEWGEYIKRAHAGEHDAMLFGWTGDNG 436
Query: 682 DSDNWVGPFLYGATEFKEINI 702
D DNW+ LYG N+
Sbjct: 437 DPDNWLAT-LYGCDSINGNNV 456
>pir||B72289 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4981698|gb|AAD36226.1|AE001772_5 (AE001772)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 503
Score = 121 bits (300), Expect = 3e-26
Identities = 121/479 (25%), Positives = 204/479 (42%), Gaps = 91/479 (18%)
Query: 217 VIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEW 276
V+ T + DPA Y+ F I + LV Y + T + P LA W ++ GT +
Sbjct: 26 VVGTTDKIRTLDPANCYDYFSSNILQNVMVGLVDY-EIGTSVLKPVLAERWEVDETGTVY 84
Query: 277 YFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEE 336
F +R K + D T PIDA ++F RV +L ++++
Sbjct: 85 TFYLRKDAK----FEDGT-PIDAHVFKYSFDRVMKLNGDPAFLL---------------- 123
Query: 337 FNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPF 396
++V E++D + F++ L +P++A ++V+
Sbjct: 124 ------------------SDVVEKTEVVDDY--------TFRVTLKYPFSAFVSVLGYTV 157
Query: 397 LSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKD 456
V + D + E + P +GP+ VK+
Sbjct: 158 AYPVNPKVYPADSFYEGI-------------------------------PSASGPYRVKE 186
Query: 457 YQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDV 516
+ + IVLE NP Y+ + P K ++ +A L TG DVA D DV
Sbjct: 187 WIRDVRIVLEANPNYFG--EKPKTKTIVINFYENASTLRLALETGEIDVAYRHLDP-RDV 243
Query: 517 KGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLL 576
+ + E IV P + ++V N + PF++VKVRQALAY++ D I + V+ L
Sbjct: 244 --IDLEGREDIVVYKGNSPQIRYLVINVTQPPFDNVKVRQALAYSVNRDVIVEDVFVGLA 301
Query: 577 EPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSK-YSIKLIY---NAGNSQR 632
+P + IP+ G+ + + ++ KA+ +L+EAG D + I L Y + G ++
Sbjct: 302 KPLYSMIPEGMWGHKD---VFPERDLEKARALLKEAGYDENNPLVIDLWYTPSHYGTTEA 358
Query: 633 EKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFL 691
+ L ++ KV ++ EW Y+ G ++++GW PDYLD D++V PFL
Sbjct: 359 DVAQVLKESFEETGVIKVNLKYAEWSTYVEYFLNGTMGLFLLGWYPDYLDPDDYVWPFL 417
>pir||H75413 extracellular solute-binding protein, family 5 - Deinococcus
radiodurans (strain R1)
>gi|6459037|gb|AAF10860.1|AE001976_3 (AE001976)
extracellular solute-binding protein, family 5
[Deinococcus radiodurans]
Length = 527
Score = 119 bits (296), Expect = 9e-26
Identities = 132/508 (25%), Positives = 207/508 (39%), Gaps = 78/508 (15%)
Query: 201 VVPTGVGDYNNDPETYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVS 260
VVPT T V G P S +PA + + +I DTL+ + K+ T ++
Sbjct: 12 VVPTAAAQSG----TLVFGGNGEPVSLEPANITDGISINVQRQIYDTLIDF-KDGTTQLV 66
Query: 261 PDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMV 320
P LA +W N T W F +R GVK +HD T P +A V+F R W
Sbjct: 67 PGLATSWKPNANATSWTFTLRKGVK----FHDGT-PFNADAVVFNLTR---------W-- 110
Query: 321 KTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLV 380
+ K+HP G+T E+ + +LL GYKG+ V K V
Sbjct: 111 -------------------WDKNHPYSLRKDGRTFEI--VGDLLG--GYKGDATSVIKNV 147
Query: 381 LPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYG-KNPDAWKDYVQKGANDATH 439
+ + + + P SV P + + + +G +P A K+ K A
Sbjct: 148 VKVNDSTVRVDLTKPS-SVFP----------DVIASGYFGIASPTAIKEQGAKYGTPAGK 196
Query: 440 QLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLT 499
VGTGPF + ++ + L N YW VI D R+ L
Sbjct: 197 A------VGTGPFIFQSWKSGDRVTLTANKNYWGTKAKVA--TVIIRAIKDPSQRLNELR 248
Query: 500 TGTADVAAIPTDKIED-VKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQAL 558
GT D A D + D +K + D + VK + F+ N + + + KVRQA+
Sbjct: 249 AGTIDFA---NDMVPDSLKAIQADKNLVAVKRPSF--NVGFVSLNNRNKYLKNAKVRQAI 303
Query: 559 AYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGI-IKYNYNIAKAKQMLQEAGIDPS 617
+ A+ I + L + N +P Y + Y ++ A AK++L +AG P+
Sbjct: 304 SMALNKKAIVDAFWPGLGQSNASFVPPDLARYNSSKVPADYKFDPAAAKKLLADAGY-PN 362
Query: 618 KYSIKLIYNAGN----SQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKG-DYDVY 672
+S+ L Y + + I + S +G KV +++ +W YL K +D+Y
Sbjct: 363 GFSMDLWYMPVSRPYFPSPKPIAEAMAADLSAIGIKVNLKTEDWAKYLEDRNKAPGFDMY 422
Query: 673 VVGWVPDYLDSDNWVGPFLYGATEFKEI 700
++GW DY DN+ + YG +I
Sbjct: 423 MIGWTGDYGHPDNFYSAY-YGPNGSSDI 449
>pir||T44635 dipeptide transporter protein dppA [imported] - Bacillus firmus
(fragment) >gi|1813495|gb|AAB41688.1| (U64514) dipeptide
transporter protein dppA [Bacillus firmus]
Length = 551
Score = 118 bits (294), Expect = 2e-25
Identities = 122/488 (25%), Positives = 207/488 (42%), Gaps = 78/488 (15%)
Query: 214 ETYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEG 273
+T V A G S D A + + I +TL+ + +++ E+ P LA W + G
Sbjct: 49 QTLVFARGGDSVSLDYASVTDGESSRVTKNIYETLIEFDRDSF-EIGPGLAHDWEVDDSG 107
Query: 274 TEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALT 333
+ F + GVK +HD T +A V F R A H +++ +
Sbjct: 108 LRFVFHLEEGVK----FHDGT-DFNAEAVKVNFERWADPEHKYAFLDE------------ 150
Query: 334 EEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFK---LVLPHPYAAILN 390
G T V Q F GYKG+ V + ++ + +LN
Sbjct: 151 ------------------GYTYSVYGTQ----FGGYKGDEGHVIEEINVLGDYEIEFVLN 188
Query: 391 VVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTG 450
FL + M Y +P A++++ +++ PVGTG
Sbjct: 189 QPLGSFLQNMGMSYFAIT-------------SPQAFEEH---------GSAINENPVGTG 226
Query: 451 PFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA-AIP 509
PF + + I+LE N YW P RVI+ + D AR+ L +G D+ +
Sbjct: 227 PFKFVSWSRDDSIILEKNEDYWKE-GLPKLDRVIFQVIPDNSARLTALRSGQIDIMDGLN 285
Query: 510 TDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAK 569
D + ++G D+ ++ +T + ++ F+ KEPFND VR+A +AI + +
Sbjct: 286 PDDVAQIEG--DDSLQVFERTT---NNIGYLGFHVDKEPFNDPVVRRAFNHAIDKEGLIA 340
Query: 570 VVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKL----IY 625
++Y L E IP + GY + I +Y+Y+ AK++L EAGI+ ++ L +
Sbjct: 341 ILYGGLAETAKNTIPPGYLGYND-AIDEYSYDPELAKELLAEAGIEDG-FTFDLWTMPVA 398
Query: 626 NAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDN 685
++ IQ + +G + + EW YL +TE+G +DV+++GW D D
Sbjct: 399 RPYMPDPQRAAEAIQANLADVGITANIVTKEWATYLEETEQGKHDVFMLGWSGVNGDPDY 458
Query: 686 WVGPFLYG 693
+ L+G
Sbjct: 459 FFSNLLHG 466
>dbj|BAA15142.1| (D90789) Periplasmic dipeptide transport protein precursor
(Dipeptide-binding protein) (DBP). [Escherichia coli]
>gi|1742438|dbj|BAA15152.1| (D90790) Periplasmic
dipeptide transport protein precursor (Dipeptide-binding
protein) (DBP). [Escherichia coli]
Length = 562
Score = 116 bits (288), Expect = 8e-25
Identities = 107/470 (22%), Positives = 185/470 (38%), Gaps = 87/470 (18%)
Query: 217 VIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTK---EVSPDLAVAWAHNKEG 273
VI P++ DPA T + W + + LV Y + K +V DLA +W + +
Sbjct: 79 VIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQ 138
Query: 274 TEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALT 333
EW F ++ K D P+ A V +F R+ ++G + + + A T
Sbjct: 139 KEWTFTLKDNAKFADGT-----PVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHT 193
Query: 334 EEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVA 393
K L P+A L +A
Sbjct: 194 -------------------------------------------VKFTLSQPFAPFLYTLA 210
Query: 394 DPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFY 453
+ S++ NP K++ A D + + G+GPF
Sbjct: 211 NDGASII---------------------NPAVLKEH----AADDARGFLAQNTAGSGPFM 245
Query: 454 VKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA-AIPTDK 512
+K +Q+ +VL NP+Y + P KRV I ++ +R L+ G D+A A+P D+
Sbjct: 246 LKSWQKGQQLVLVPNPHY--PGNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQ 303
Query: 513 IEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVY 572
+ +K K N + T++ N K P N +R+A++++ Y + +
Sbjct: 304 LNALKQENKVNVAEYPSLRV-----TYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGIL 358
Query: 573 NNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQR 632
+ + GPIP+ GY + ++YN++ KAK + P+ S+ +Y+ +
Sbjct: 359 SGNGKQMRGPIPEGMWGY-DATAMQYNHDETKAKAEWDKVTSKPT--SLTFLYSDNDPNW 415
Query: 633 EKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLD 682
E I Q+ ++LG V +E + KGDYD+ + W PD+ D
Sbjct: 416 EPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFAD 465
>sp|P76128|YDDS_ECOLI PUTATIVE BINDING PROTEIN YDDS PRECURSOR >gi|7442325|pir||B64902
probable oligopeptide-binding periplasmic protein b1487
precursor - Escherichia coli >gi|1787762|gb|AAC74560.1|
(AE000245) putative hemin-binding lipoprotein
[Escherichia coli K12]
Length = 516
Score = 116 bits (288), Expect = 8e-25
Identities = 107/470 (22%), Positives = 185/470 (38%), Gaps = 87/470 (18%)
Query: 217 VIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTK---EVSPDLAVAWAHNKEG 273
VI P++ DPA T + W + + LV Y + K +V DLA +W + +
Sbjct: 33 VIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQ 92
Query: 274 TEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALT 333
EW F ++ K D P+ A V +F R+ ++G + + + A T
Sbjct: 93 KEWTFTLKDNAKFADGT-----PVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHT 147
Query: 334 EEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVA 393
K L P+A L +A
Sbjct: 148 -------------------------------------------VKFTLSQPFAPFLYTLA 164
Query: 394 DPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFY 453
+ S++ NP K++ A D + + G+GPF
Sbjct: 165 NDGASII---------------------NPAVLKEH----AADDARGFLAQNTAGSGPFM 199
Query: 454 VKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA-AIPTDK 512
+K +Q+ +VL NP+Y + P KRV I ++ +R L+ G D+A A+P D+
Sbjct: 200 LKSWQKGQQLVLVPNPHY--PGNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQ 257
Query: 513 IEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVY 572
+ +K K N + T++ N K P N +R+A++++ Y + +
Sbjct: 258 LNALKQENKVNVAEYPSLRV-----TYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGIL 312
Query: 573 NNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQR 632
+ + GPIP+ GY + ++YN++ KAK + P+ S+ +Y+ +
Sbjct: 313 SGNGKQMRGPIPEGMWGY-DATAMQYNHDETKAKAEWDKVTSKPT--SLTFLYSDNDPNW 369
Query: 633 EKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLD 682
E I Q+ ++LG V +E + KGDYD+ + W PD+ D
Sbjct: 370 EPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFAD 419
>pir||C70425 transporter (extracellular solute binding protein family 5) -
Aquifex aeolicus >gi|2983834|gb|AAC07389.1| (AE000740)
transporter (extracellular solute binding protein family
5) [Aquifex aeolicus]
Length = 584
Score = 115 bits (286), Expect = 1e-24
Identities = 121/476 (25%), Positives = 193/476 (40%), Gaps = 99/476 (20%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTL--VTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIR 281
P++ +PA ET + IGD +T T +V P+LA W + G W F +R
Sbjct: 63 PKTLNPALAMETSSTAV---IGDLFSGLTKLDLKTMKVKPNLAQGWEVREGGKVWIFYLR 119
Query: 282 GGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYL 341
VK W D P A DV+FTF V L + + +
Sbjct: 120 KDVK----WSDGK-PFTADDVVFTFNEVY-LNDKIPTTARDIFTIK-------------- 159
Query: 342 KSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVP 401
GK +V+ + E + +LP P+A PFL+ +
Sbjct: 160 ----------GKKIKVRKIDEY------------TVEFILPEPFA--------PFLNSLG 189
Query: 402 MEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENS 461
+E L K E +K + AW N T+ K VGTG + +++Y +
Sbjct: 190 VEILPKHKLENYVKEGTFST---AW--------NVNTNP---KEIVGTGAYKIEEYVKGQ 235
Query: 462 YIVLEYNPYYWNATDN----PGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVK 517
+V NPYY+ +N P K + +I D + G D + + +D+
Sbjct: 236 RVVYRANPYYYEKDENGNRLPYIKEKVGVIIPDPDTALLKFVNGEIDYIGV---RAQDLL 292
Query: 518 GVTKDNYEIIVKTDI-LLPVLTFIVFNTQKEP---------FNDVKVRQALAYAIPYDQI 567
+ + V D+ P TF+VFN F D R A+++AI + I
Sbjct: 293 FLANQKDKDFVVYDLGATPSTTFLVFNQNPNAKIPKYKIKWFRDRTFRIAISHAIDREGI 352
Query: 568 AKVVYNNLLEPNWGPI-PKPWPGYTEYGIIKYNYNIAKAKQMLQEAGI----------DP 616
K+VYN L +P + PI P P Y E K+ +N+ KA+++L+ G DP
Sbjct: 353 VKLVYNGLAQPLYTPITPANRPYYEESYYPKFEFNLKKARELLESIGFKDRDGDGILEDP 412
Query: 617 SKYSIK--LIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYD 670
+ ++ LI NAGN +RE + +I+ ++G KV + ++ +SK Y+
Sbjct: 413 EGHDLEFTLITNAGNKEREMMGAIIKEDLRKIGIKVHFQPIDFNTLVSKLTSPPYE 468
>pir||E72451 probable transport system binding protein APE2257 - Aeropyrum
pernix (strain K1) >gi|5105958|dbj|BAA81269.1|
(AP000064) 515aa long hypothetical transport system
binding protein [Aeropyrum pernix]
Length = 515
Score = 115 bits (284), Expect = 2e-24
Identities = 124/483 (25%), Positives = 187/483 (38%), Gaps = 96/483 (19%)
Query: 217 VIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEW 276
VI T DPA +Y+ F WE+ + LVTY ++ + P LA W + G W
Sbjct: 37 VIGTTDDVTELDPATSYDFFTWEVLSNVMAGLVTYDQQGN--IVPYLAERWESQEGGKVW 94
Query: 277 YFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEE 336
F +R K D P DA V+ + RV + SW+V
Sbjct: 95 IFYLRQDAKFPDGT-----PCDADVVVRSIKRVMTIQGDPSWLV---------------- 133
Query: 337 FNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPF 396
TE E LD + K L P L VVA P
Sbjct: 134 ------------------TEFVENVEALDQW--------TVKFTLKQPTGYFLAVVATP- 166
Query: 397 LSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKD 456
Y +P+ +D + A DAT G GP+ + +
Sbjct: 167 --------------------PYYPVHPNYPED---QPAPDATWG-------GCGPYMIDE 196
Query: 457 YQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDV 516
+ + Y+ L+ NP ++ + P + VI + L G DVA T D+
Sbjct: 197 FVRDQYLRLKPNPNFFG--EEPKNDGVIIRFYEGSEDLRSALEAGEIDVAW-RTLNPSDL 253
Query: 517 KGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLL 576
+ + Y I + + ++V + P ++V VRQALA AI I V+ +
Sbjct: 254 EDLRSKGYNIKEVPGLFI---RYLVLRVSQPPLDNVAVRQALAAAIDRQDIVDRVFRGTM 310
Query: 577 EPNWGPIPKPWPGYTEYGIIKYNY----NIAKAKQMLQEAGIDPS-KYSIKLIYNAGN-- 629
EP + +P G+ Y K Y NI A+Q+L +AG S K ++L Y +
Sbjct: 311 EPLYSMVPSGMWGH--YPAFKEKYGEGPNIDLARQLLSQAGYSESNKLQVELWYTPEHYG 368
Query: 630 SQREKIMTLIQNIWSQLGF-KVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVG 688
+ +I+ W G V ++S EW Y+ + G + ++GW PDYLD DN++
Sbjct: 369 DTEAALAAVIKEQWEATGMISVEIKSSEWGTYVDQLSSGQMMISLLGWYPDYLDPDNFLT 428
Query: 689 PFL 691
PFL
Sbjct: 429 PFL 431
>gi|10955080 agaA [Agrobacterium tumefaciens] >gi|11277227|pir||T45529 agaA
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665705|gb|AAB88465.1| (AF242881) agaA
[Agrobacterium tumefaciens]
Length = 509
Score = 113 bits (281), Expect = 5e-24
Identities = 106/391 (27%), Positives = 179/391 (45%), Gaps = 71/391 (18%)
Query: 335 EEFNEYLKSHPLVAEYHGKTT----EVK-SLQELLDFFG---YKGETAGV---------- 376
+EF +L+ A++H TT +VK SL+ +LD G ++ E + +
Sbjct: 83 KEFTFHLRQ----AKFHDGTTVTSADVKASLERILDPKGKASFRNELSSISKIETPDEKT 138
Query: 377 FKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGAND 436
KL L P A+++ +A P +VP +L + NP+A
Sbjct: 139 VKLTLSTPSVAMIDYLALPESVIVPAAWL-----------AKNADNPNA----------- 176
Query: 437 ATHQLMHKYPVGTGPFYVKDYQENSYI-VLEYNPYYWNATDNPGHKRVIYIINSDAVARV 495
PVG GPF + I V +++ YY P V Y+ SD RV
Sbjct: 177 --------APVGAGPFKFAGWTRGREITVKKFDDYYKKG--KPDLDEVHYVFYSDENTRV 226
Query: 496 QLLTTGTADVAA-IPTDKIEDV-KGVTKDNYEIIVKTDILLPVLTF--IVFNTQKEPFND 551
L +G D+ +P D+ KG +T +L F + FNT+ EPF+
Sbjct: 227 NALKSGDVDIIDYVPAKDAADIAKGP---------ETQLLRNTGPFMGLQFNTKFEPFSK 277
Query: 552 VKVRQALAYAIPYDQIAKVVYNNLLEPNWG-PIPKPWPGYTEYGIIKYNYNIAKAKQMLQ 610
+VRQA+AYA+ I +N L P +G IPK + GY++ +++++ KAK +L
Sbjct: 278 PEVRQAIAYAVDRSAIINTAFNGLGSPIFGIAIPKGYMGYSDAKANYFSHHVEKAKALLA 337
Query: 611 EAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYD 670
+AG P+ + ++L+ + S ++ IQ+ +++G KV ++ +W ++K GDYD
Sbjct: 338 KAGY-PNGFEVRLLATSQYSFQQNTAIAIQSELAKIGIKVKLDLPDWASRMAKASTGDYD 396
Query: 671 VYVVGWVPDYLDSDNWVGPFLYGATEFKEIN 701
V+G + + D+D W+ + YG + N
Sbjct: 397 FTVMGSLGEITDAD-WLSNYYYGGDKLVRTN 426
>pir||B82242 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein VC1091 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9655560|gb|AAF94250.1| (AE004190)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Vibrio cholerae]
Length = 543
Score = 109 bits (270), Expect = 1e-22
Identities = 73/248 (29%), Positives = 128/248 (51%), Gaps = 14/248 (5%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
VG G + + + N + L+ NP YW+ N +V Y+ + VA + +G +
Sbjct: 213 VGNGAYVLDKWVVNERLELKRNPQYWD-DKNTVLNKVTYLPIENQVAEMNRFLSGEIQIT 271
Query: 507 -AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYD 565
+P +E K + K++ E + L + FN +K PF+DV+VR+AL+YAI D
Sbjct: 272 NELP---LEHFKRLKKEHPESVQVQGQLCTY--YYGFNNKKPPFDDVRVRKALSYAIDRD 326
Query: 566 QIAKVVYNNLLEPNWGPIPKPWPGYTE----YGIIKYNYNIAKAKQMLQEAGIDPSK-YS 620
++ + +P + P+ G++ YG + IA+AK++L+EAG + S
Sbjct: 327 VVSDAILGQGQKPAYFLTPEITAGFSPEMPAYGKMTQKERIAEAKKLLEEAGYNKSNPLK 386
Query: 621 IKLIYNAGNSQREKIMTLIQNIW-SQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPD 679
L+YN + + KI T IQ++W + LG + +E+ EW YL +G++DV GW D
Sbjct: 387 FTLLYNTSENHK-KIATAIQSMWKTSLGVDIALENQEWKTYLDTRRQGNFDVTRAGWCGD 445
Query: 680 YLDSDNWV 687
Y ++ +++
Sbjct: 446 YNEASSFL 453
>emb|CAB96044.1| (AJ250012) surface antigen [Borrelia afzelii]
Length = 528
Score = 107 bits (264), Expect = 5e-22
Identities = 123/487 (25%), Positives = 199/487 (40%), Gaps = 83/487 (17%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGG 283
P S DP + G ++ + L+T NT P LA +W + +GT + F +R
Sbjct: 38 PSSLDPQLADDNVGSKMIDTMFKGLIT-GDPNTGGNKPGLAKSWDISPDGTVYTFTLREK 96
Query: 284 VKAYDPWHDKTYPIDATDVLFTFWRVAR--LGHSVSWMVKTFMNVSASQALTEEEFNEYL 341
+ W D I A + ++ R+ G + S MVK+ T + +Y
Sbjct: 97 II----WSDGV-AITAEGIRKSYLRILNKETGSNYSEMVKS----------TIKNGQKYF 141
Query: 342 KSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVP 401
+E + + K+L+ L+ P PY + V S +P
Sbjct: 142 DGQVSDSELGIRAIDEKTLEITLES---------------PKPYFIDMLV----HQSFIP 182
Query: 402 MEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENS 461
+ + +KY ++ NP+ V +GPF +K+ N
Sbjct: 183 IPIHIAEKYGQSWT------NPENI--------------------VTSGPFKLKERIPNE 216
Query: 462 YIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADV--AAIPTDKIEDVKGV 519
V+E N Y+N+ + Y N ++ A ++ G D +AIP D I+D+K +
Sbjct: 217 KYVVEKNDKYYNSNQVEVQEITFYTTNDNSTA-YKMYENGELDAIFSAIPPDLIKDLK-L 274
Query: 520 TKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPN 579
D Y V + F FNT +P ++VKVR+AL AI + + V L+
Sbjct: 275 RSDYYSSAVNA------IYFYAFNTHIKPLDNVKVRKALTLAIDRETLTYKV----LDDG 324
Query: 580 WGPIPKPWPGYTEYGIIKYN--YNIAKAKQMLQEAGIDPSKYS--IKLIYNAGNSQREKI 635
P + P ++ Y K +N AK +L EAG +KL YN + + KI
Sbjct: 325 TTPTRRITPNFSSYSYAKNLELFNPEIAKTLLAEAGYPNGNGFPILKLKYNTSEAHK-KI 383
Query: 636 MTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFLYGA 694
IQN W + L V +E+ EW YL+ G+Y++ GW+ DY D ++ +G
Sbjct: 384 CEFIQNQWKKILNIDVELENEEWTTYLNTKSNGNYEIARAGWIGDYADPLTFLSILTHGY 443
Query: 695 TEFKEIN 701
T+F N
Sbjct: 444 TQFSSHN 450
>pir||E75529 probable peptide ABC transporter, periplasmic peptide-binding
protein - Deinococcus radiodurans (strain R1)
>gi|6458039|gb|AAF09942.1|AE001896_7 (AE001896) peptide
ABC transporter, periplasmic peptide-binding protein,
putative [Deinococcus radiodurans]
Length = 583
Score = 106 bits (262), Expect = 9e-22
Identities = 114/496 (22%), Positives = 198/496 (38%), Gaps = 82/496 (16%)
Query: 226 SFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGGVK 285
+ DP +Y+T E+ + +TL+TY + K + P LA W + G + F +R VK
Sbjct: 46 TLDPGVSYDTASGEMIENMYETLLTYKGSSLKTLEPLLATKWTASNGGKTYTFDLRKNVK 105
Query: 286 AYDPWHDKTYPIDATDVLFTFWR--VARLGHSVSWMVK-----TFMNVSASQALTEEEFN 338
+ + TD +TF R V G S +W + T N + +++T ++ +
Sbjct: 106 FHSG-----ATMTCTDAEYTFERNLVTNSGESGNWFIAEPLLGTQNNANDDKSVTWDKID 160
Query: 339 EYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLS 398
K E S +L VF L P A L +A S
Sbjct: 161 --------------KAVECNSKGQL------------VFNLAKVDP--AFLAKLAYSGQS 192
Query: 399 VVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQ 458
+V +Y + WK +V K D T + K P GTGP+ +
Sbjct: 193 IVERKY--------NASIGEWDGTEKTWKTWVGK---DLTGSNLSKKPNGTGPYRLVKQD 241
Query: 459 ENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKG 518
N+ + ++ Y+ A P K VI S+ R Q G ADV +++ +
Sbjct: 242 ANNLLFQAFDGYWGKA---PSIKNVIRQKVSEIAPRQQAFLRGDADVIEGGGRNVDEAQI 298
Query: 519 VTKDNYEIIVKTDILLPVLTFIVFNTQKEP-------------------FNDVKVRQALA 559
K + D L F++F Q F D +R+A +
Sbjct: 299 KGKPG---VAWLDNLPNTSAFVIFMNQNIKATNLLGSGKLDGNGIPANFFRDANLRRAFS 355
Query: 560 YAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEA---GIDP 616
Y+ Y Q V + +P +PGY + + Y ++ AKA Q ++A +
Sbjct: 356 YSFNYQQYIDDVQKGKGKQRTMALPDSFPGY-DPKVNTYTFDKAKATQYFKQAWGGNVWK 414
Query: 617 SKYSIKLIYNAGNSQREKIMTLIQNIWSQLG--FKVTVESYEWPVYLSKTEKGDYDVYVV 674
+++ + Y AG++ + M +++ + FKV ++ +W L+ +++G+ + ++
Sbjct: 415 QGFTLTVNYRAGSTTSQTAMEILKRNVESVNPKFKVKIQPEQWSEMLAASKRGEEAMVLI 474
Query: 675 GWVPDYLDSDNWVGPF 690
GW PDY D DN++ F
Sbjct: 475 GWSPDYADPDNFLYTF 490
>dbj|BAB03750.1| (AP001507) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 538
Score = 106 bits (262), Expect = 9e-22
Identities = 77/261 (29%), Positives = 128/261 (48%), Gaps = 17/261 (6%)
Query: 428 DYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYII 487
DY +++ P GTG F D + Y+ L N YW+ T V + +
Sbjct: 196 DYAAMEEGKDPGSYINENPTGTGYFKFDDRVPDQYVRLVRNDDYWDGTALLDS--VTFKV 253
Query: 488 NSDAVARVQLLTTGTADVA--AIPTD--KIEDVKGVTKDNYEIIVKTDILLPVLTFIVFN 543
+ + R+ L TG + ++ P+D ++E +G+ + + L++I FN
Sbjct: 254 VGEDLTRIAELETGDSHISNPLSPSDVSRVEATEGMHVHRQDSMS--------LSYIGFN 305
Query: 544 TQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIA 603
KEPF+DV+VRQA++ AI QI +Y+ + P GP+ GY + + +++I
Sbjct: 306 LDKEPFDDVRVRQAISMAIDKSQIIDGIYDGVGVPAIGPLAPGTVGYDD-TVSGLDHDIE 364
Query: 604 KAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSK 663
KAK++L EAG + +S L N N +R T +Q ++G V +E EW YL
Sbjct: 365 KAKELLAEAGYEDG-FSTTLWTN-DNRERVDAATNVQAQLKEIGIDVEIEVLEWGTYLEN 422
Query: 664 TEKGDYDVYVVGWVPDYLDSD 684
T G++D++V+GW D+D
Sbjct: 423 TANGEHDMFVLGWSTVTGDAD 443
>pir||G75577 extracellular solute-binding protein, family 5 - Deinococcus
radiodurans (strain R1)
>gi|6460687|gb|AAF12392.1|AE001863_17 (AE001863)
extracellular solute-binding protein, family 5
[Deinococcus radiodurans]
Length = 529
Score = 106 bits (262), Expect = 9e-22
Identities = 123/492 (25%), Positives = 206/492 (41%), Gaps = 71/492 (14%)
Query: 215 TYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGT 274
T V+A G P + + A +++ + +I D L+ K + +++P LA +WA NK+ T
Sbjct: 20 TLVVAGSGEPATLESANAHDSVTMHVQRQIYDRLINV-KPGSTDLAPGLATSWAPNKDAT 78
Query: 275 EWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTE 334
W F +R GVK +HD T P +A V+F R W K+ N Q T
Sbjct: 79 SWTFTLRRGVK----FHDGT-PFNADAVVFNLRR---------WWDKSDPNGLRDQGRT- 123
Query: 335 EEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVAD 394
+VA+ G GYKGE + K ++ + + +
Sbjct: 124 ---------FSIVADLLG---------------GYKGEKNAIIKNIVKVNDSVVRVDLTR 159
Query: 395 PFLSVVPMEYLLGDKYEEALKASNYG-KNPDAWKDYVQKGANDATHQLMHKYPVGTGPFY 453
P +V P++ + AS +G +P A K +GA T Q VGTGPF
Sbjct: 160 PN-TVFPVQ----------MSASYWGIASPAAIK---AQGAKYGTPQ---GTAVGTGPFV 202
Query: 454 VKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKI 513
++ + L N YW + P +I D R+ L GT D+ + +
Sbjct: 203 FGSWRSGDRVTLRANTAYWGS--KPKVDTLIIRSIKDPNQRLNELRAGTVDL--VGDLQP 258
Query: 514 EDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYN 573
+D+K + D ++ K L +I N + E + KVRQA++ AI + ++
Sbjct: 259 DDMKAIQADKNLVLYKRPSFN--LGYIGLNNRNEYLKNPKVRQAISMAINRRAVVDAFWS 316
Query: 574 NLLEPNWGPIPKPWPGYTEYGI-IKYNYNIAKAKQMLQEAGIDPSKYSIKLIY----NAG 628
L + +P T + Y ++ A AK++L EAG P+ +++ Y +
Sbjct: 317 GLGRTDTSIVPPALGWATSSKVPADYKFDPAAAKKLLAEAGY-PNGFTLDFWYMPITRSY 375
Query: 629 NSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVG 688
Q + + + +G KV +++ +W YL G ++ +G + DY D D + G
Sbjct: 376 FPQPKASAEAMAADLADVGIKVNLKTEDWAKYLDDLFAGRLSMFQIGLIGDYGDPDYFYG 435
Query: 689 PFLYGATEFKEI 700
LY T +I
Sbjct: 436 A-LYNPTSTNDI 446
>dbj|BAA94699.1| (AB026907) dipeptide transporter DppA homolog [Ochrobactrum
anthropi]
Length = 508
Score = 105 bits (259), Expect = 2e-21
Identities = 86/315 (27%), Positives = 142/315 (44%), Gaps = 50/315 (15%)
Query: 378 KLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
+L L HPY+A+ + ++ S+V ++Y K+P A+ G+N
Sbjct: 142 RLTLKHPYSALESALSLYAASIV--------------SKADYEKDPSAF------GSN-- 179
Query: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDN----PGHKRVIYIINSDAVA 493
PV TGPF V+ Y+ + VL N YYW ++ P VI ++ +
Sbjct: 180 --------PVCTGPFKVESYERGTQAVLVPNTYYWRQGEDGKALPYLDEVILKYVPESNS 231
Query: 494 RVQLLTTGTADVA-AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDV 552
R+ L G DV+ A+P ++ E +K + + E+ L ++ N K+P +D
Sbjct: 232 RILGLQNGDVDVSLAVPLNQAEAIKAIDGISLEVSPSFR-----LDYVFLNHAKKPLDDK 286
Query: 553 KVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPK---PWPGYTEYGIIKYNYNIAKAKQML 609
R AL YA + I K VY +G IP P Y + + ++I K+KQ+
Sbjct: 287 NFRLALNYAANREAILKAVYFG-----YGEIPNSYMPKVTYWSDKVARIPFDIEKSKQLA 341
Query: 610 QEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDY 669
+++G D + I+++ + GN+ I ++Q W Q G + + Y+ S +EKGDY
Sbjct: 342 KDSGYDGAP--IQIMVDTGNTSFRTIAAILQQGWKQAGIESEIVEYDVGTAFSMSEKGDY 399
Query: 670 DVYVVGWVPDYLDSD 684
YV D D D
Sbjct: 400 QAYVSYITSDISDDD 414
>sp|P42061|APPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN APPA PRECURSOR >gi|2126888|pir||I40545
oligopeptide ABC transporter (oligopeptide-binding
protein) appA - Bacillus subtilis
>gi|677945|gb|AAA62358.1| (U20909) AppA [Bacillus
subtilis] >gi|2633492|emb|CAB12995.1| (Z99110)
oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus subtilis]
Length = 543
Score = 102 bits (253), Expect = 1e-20
Identities = 84/262 (32%), Positives = 119/262 (45%), Gaps = 25/262 (9%)
Query: 439 HQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLL 498
++ K P+G+GPF K++++ YI LE N Y+ P V Y + DA A L
Sbjct: 198 NEFNRKKPIGSGPFKFKEWKQGQYIKLEANDDYFEG--RPYLDTVTYKVIPDANAAEAQL 255
Query: 499 TTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQAL 558
G + +P D K K N IV TD+ L + +I +N + E F D KVRQAL
Sbjct: 256 QAGDINFFNVPAT---DYKTAEKFNNLKIV-TDLALSYV-YIGWNEKNELFKDKKVRQAL 310
Query: 559 AYAIPYDQIAKVVYNNLLEPNWGP-IPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGI--- 614
A+ + I V + E + P P W + + K+ YN KAKQML EAG
Sbjct: 311 TTALDRESIVSQVLDGDGEVAYIPESPLSWNYPKDIDVPKFEYNEKKAKQMLAEAGWKDT 370
Query: 615 --------DPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTE- 665
D K+S L N GN RE I ++Q ++G +V + EW + +
Sbjct: 371 NGDGILDKDGKKFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNP 430
Query: 666 -KGDYDVYVVGW----VPDYLD 682
D+D V+GW PD D
Sbjct: 431 PNWDFDAMVMGWSLSTFPDQYD 452
>pir||C75202 dipeptide abc transporter, dipeptide-binding protein PAB0091 -
Pyrococcus abyssi (strain Orsay)
>gi|5457575|emb|CAB49066.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 556
Score = 102 bits (251), Expect = 2e-20
Identities = 110/442 (24%), Positives = 176/442 (38%), Gaps = 104/442 (23%)
Query: 258 EVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVS 317
++ P LA +W +++G F +R G++ PI A DV F F R+
Sbjct: 92 KIIPGLAESWEISEDGKVITFHLRKGIR-----DALGNPITAEDVKFVFDRL-------- 138
Query: 318 WMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVF 377
MN + PLV G EVK + +
Sbjct: 139 ------MNPETRSPMA-----------PLVL---GPLKEVKVIDDY------------TV 166
Query: 378 KLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
+L+ PY L PFL+ +P + ++ E + +G+ P
Sbjct: 167 QLIYKEPYGPAL-----PFLATMPPLGIFSKEFYEKVGPVQFGQTP-------------- 207
Query: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWN------ATDNPGH---KRVIYIIN 488
GTGP+YV + +YI + NPY+ A NPG + + + I
Sbjct: 208 ---------AGTGPYYVVKWVRGAYIEYKRNPYWKREYRPDPALKNPGPPYIETIRFRII 258
Query: 489 SDAVARVQLLTTGTADVAA-IPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKE 547
+ V G V +P + +D+ N E+I + VL +I FN QK
Sbjct: 259 KEPFTLVSEFKAGNIHVLLDVPPEFYKDL--ANDPNVEMIPALEY---VLHYIGFNCQKY 313
Query: 548 PFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYT----EYGIIKYNYNIA 603
PFND +VRQA+ AI ++I K L P GP+ GY+ EY KY Y+
Sbjct: 314 PFNDTRVRQAINMAINREEIIKYALEGLAVPVHGPLVPSMNGYSEKMEEYAKQKYPYDPE 373
Query: 604 KAKQMLQEAG------------IDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVT 651
KAKQ+L EAG + +K+ +++ + G + K+ +IQ +++G KV
Sbjct: 374 KAKQLLAEAGWVDRDGDGILEDKNGNKFIVEMWISTGELEAPKVAQIIQAQLAKIGIKVK 433
Query: 652 VESYEWPVYLSKTEKGDYDVYV 673
+ + E + KG + +Y+
Sbjct: 434 IRTVEESSFTDLVSKGLHQMYL 455
>pir||G82981 probable binding protein component of ABC dipeptide transporter
PA5317 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9951634|gb|AAG08702.1|AE004944_6 (AE004944)
probable binding protein component of ABC dipeptide
transporter [Pseudomonas aeruginosa]
Length = 526
Score = 101 bits (249), Expect = 3e-20
Identities = 103/432 (23%), Positives = 174/432 (39%), Gaps = 63/432 (14%)
Query: 259 VSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDK-TYPIDATDVLFTFWRVARLGHSVS 317
V P LA W+ + +G + F +R GV + + K + +DA DV+F+F R+
Sbjct: 67 VVPSLAERWSVSDDGLSYRFDLRQGVHFHSTAYFKPSRTLDADDVVFSFQRML------- 119
Query: 318 WMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVF 377
+ N + K VA+ + L EL+ G+ +F
Sbjct: 120 -----------------DPANPWHK----VAQNGFPHAQSMQLPELIKRVEKSGDHQVLF 158
Query: 378 KLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
VL HP A L +++ F S+ EY ++ +KA
Sbjct: 159 --VLDHPDATFLPMLSMGFASIYSAEYA-----DQLMKAG-------------------- 191
Query: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQL 497
T + ++ P+G+GPF K +Q+++ + NP Y+ P +I+ I DA R+Q
Sbjct: 192 TPEKLNAEPIGSGPFVFKRFQKDAVVRYAANPEYF--AGKPAVDALIFAITPDANVRLQK 249
Query: 498 LTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQA 557
L G +A P K DV+ KD + +T + F+ NTQ P +D KVRQA
Sbjct: 250 LRRGECQIALSP--KPLDVESARKDASLKVEQTPAFMTA--FVALNTQHPPLDDPKVRQA 305
Query: 558 LAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPS 617
+ A + V+ G P Y I Y + +A+++L +
Sbjct: 306 INLAFDRTSYLQAVFEGSASAATGIYPPNTWSYAR-DIPAYPHAPEQARKLLAGKQLPEL 364
Query: 618 KYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWV 677
+ + N L+Q ++ G K + EW + + + G++D+ +GW
Sbjct: 365 NIWTRPSGSLLNPNPSLGAQLLQADLAEAGIKANIRVIEWGELIRRAKNGEHDLLFMGWA 424
Query: 678 PDYLDSDNWVGP 689
D D DN++ P
Sbjct: 425 GDNGDPDNFLTP 436
>emb|CAB96045.1| (AJ250013) surface antigen [Borrelia garinii]
Length = 528
Score = 100 bits (246), Expect = 7e-20
Identities = 79/262 (30%), Positives = 120/262 (45%), Gaps = 20/262 (7%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADV- 505
V +GPF +K+ N V+E N Y+N+ + Y N + A ++ D
Sbjct: 202 VTSGPFKLKERIPNEKYVVEKNDKYYNSNQVEVQEITFYTTNDSSTA-YKMYENKELDAI 260
Query: 506 -AAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPY 564
+IP D I+D+K + D Y V + F FNT +P ++VKVR+AL AI
Sbjct: 261 FGSIPPDLIKDLK-LRSDYYSSAVNA------IYFYAFNTYIKPLDNVKVRKALTLAIDR 313
Query: 565 DQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYN--YNIAKAKQMLQEAGIDPSKYS-- 620
+ + V +N P + P ++ Y K +N AK +L EAG
Sbjct: 314 ETLTYKVLDN----GTTPTRRIAPNFSSYSYAKNLELFNPEIAKTLLAEAGYPNGNGFPI 369
Query: 621 IKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPD 679
+KL YN + + KI IQN W + L V +E+ EW YL+ G+Y++ GW+ D
Sbjct: 370 LKLKYNTSEAHK-KICEFIQNQWKKILNIDVELENEEWTTYLNTRSNGNYEIARAGWIGD 428
Query: 680 YLDSDNWVGPFLYGATEFKEIN 701
Y D ++ F G T+F N
Sbjct: 429 YADPLTFLSIFTQGYTQFSSHN 450
>pir||T34583 probable periplasmic oligopeptide binding protein - Streptomyces
coelicolor >gi|2815324|emb|CAA16448.1| (AL021529)
SC10A5.16c, possible periplasmic oligopeptide bindin g
protein, len: 521; weak similarity to many eg.
OPPA_SALTY P06202 periplasmic oligopeptide-binding
protein (542 aa), fasta scores; opt: 343 z-score: 306.2
E(): 7.4e-10, 25.0% i dentity in>
Length = 521
Score = 99.8 bits (245), Expect = 9e-20
Identities = 72/247 (29%), Positives = 118/247 (47%), Gaps = 7/247 (2%)
Query: 448 GTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINS-DAVARVQLLTTGTADVA 506
GTGP+ V Y + I L NP Y A +N G ++ ++ D++AR + +
Sbjct: 194 GTGPYGVVSYAKGEKISLSPNPRYKGAAENTGRPIELHFYDTPDSLARAWISHRIDVALR 253
Query: 507 AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQ 566
+P + + D+ + + V + N + +PF+D + RQA A+ I D+
Sbjct: 254 QLPPEMLADLN---PSDPGLRVTEAQSAETRNLYLNNRRGKPFHDRRARQAAAWLIDRDR 310
Query: 567 IAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIA-KAKQMLQEAGIDPSKYSIKLIY 625
I+ VY+ ++P + IP G+T Y + A KA+++L EAG + S Y
Sbjct: 311 ISYDVYDGTVDPLYSLIPTSITGHTTSFFDNYPHKDAEKARRLLVEAG-EEIPLSFTYGY 369
Query: 626 NAGN-SQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSD 684
AG S E+ + + + + FKVT+ YEW + +G+ D Y VGWV DY D D
Sbjct: 370 AAGRGSAHEEAAEVKKQLEADGLFKVTLRGYEWDEFQKSWAEGELDAYAVGWVADYPDPD 429
Query: 685 NWVGPFL 691
+ GP +
Sbjct: 430 TFGGPLV 436
>pir||B82170 peptide ABC transporter, periplasmic peptide-binding protein VC1680
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9656196|gb|AAF94830.1| (AE004246) peptide ABC
transporter, periplasmic peptide-binding protein [Vibrio
cholerae]
Length = 540
Score = 99.8 bits (245), Expect = 9e-20
Identities = 114/473 (24%), Positives = 188/473 (39%), Gaps = 73/473 (15%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGG 283
P+ D T + G +I++ TL+T E V+ LA +W N G E+ F +R
Sbjct: 47 PQLADNDITSDALGPQIYN----TLLTIDPETHLPVA-SLASSWTVNSTGLEYVFKLRPD 101
Query: 284 VKAYD-PWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLK 342
V PW T P++A DV+F+F R+ + V +Q + K
Sbjct: 102 VAFQTTPWFSPTRPLNADDVVFSFRRIID-------PTNPYHKVGQTQY-------PWFK 147
Query: 343 SHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPM 402
++ +V +L +L K VL P + L+ +A ++ +
Sbjct: 148 G----IDFQNLLVDVSALDDL------------TVKFVLSRPDNSFLSNIATSHAVILSL 191
Query: 403 EYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSY 462
EY + D + + P+GTGPFY+ +Y
Sbjct: 192 EY-------------------------ANQLIIDDEKEKLDNLPLGTGPFYLAEYHPRDL 226
Query: 463 IVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKD 522
I L+ +P YW ++V++ I+ + L DV P I +
Sbjct: 227 IRLKRHPQYWEGAAKV--EQVVFDISQRGTGMLAKLLRNECDVLNAP---ISSQLPAIEK 281
Query: 523 NYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGP 582
N +I+++T + V FI NTQ ND +VR+AL +AI I VY +
Sbjct: 282 NPDIVLQTTPAMNV-AFIAVNTQHPALNDNRVRKALNFAINRQNILDSVYYGTGSIAFTI 340
Query: 583 I-PKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPS---KYSIKLIYNAGNSQREKIMTL 638
+ P W + I+Y+ N A+A +L+EAG S+ + A N K L
Sbjct: 341 LPPTSWAYQQDTAQIRYDRNYAQA--LLREAGFATGLELTMSVPVEPKAYNPSPRKTAEL 398
Query: 639 IQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFL 691
IQ + +G + + S + + + + D+Y+ GW D D DN++ P L
Sbjct: 399 IQANLADIGVTLRLISEDRSERQELSIRNNIDLYLSGWTGDTGDPDNFLRPLL 451
>pir||B71130 probable oligopeptide binding protein APPA - Pyrococcus horikoshii
>gi|3257217|dbj|BAA29900.1| (AP000003) 597aa long
hypothetical oligopeptide binding protein APPA
[Pyrococcus horikoshii]
Length = 597
Score = 99.1 bits (243), Expect = 2e-19
Identities = 117/474 (24%), Positives = 190/474 (39%), Gaps = 93/474 (19%)
Query: 215 TYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGT 274
T ++ +G P+SF+P + G+ I ++I LVT + V PDLA W + +G
Sbjct: 40 TLIVLYWGDPKSFNPDAQVDDAGYGIANQIFCKLVTL--DRDYNVIPDLAYKWEISDDGK 97
Query: 275 EWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTE 334
+ F + WHD P+ A DV +TF + + +++ + N+ + +
Sbjct: 98 VYTFYLNPNAT----WHDGV-PVTAEDVKWTFEAIKKY-KGIAYGIIHADNIEKIEVVDN 151
Query: 335 EEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVAD 394
YLK P+A L+ +A
Sbjct: 152 YTVRFYLKE----------------------------------------PFAPFLSFLAW 171
Query: 395 PFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYV 454
++P + +KY + L KNP Y+ K P+G GPF
Sbjct: 172 YGTFILPKH--IYEKYSDWLDP----KNP-----YLNK-------------PIGCGPFKF 207
Query: 455 KDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIE 514
++ + +I L N Y+ PG ++IY I DA A +Q G DV E
Sbjct: 208 VEWVKGDHITLVANENYFRG--RPGIDKIIYKIIPDASAALQAFLAGEGDVLGQRPPLTE 265
Query: 515 DVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNN 574
+ + + ++ +P ++ FN ++ DV+VR A+AYAI ++ + N
Sbjct: 266 IPRLKSTPGVSVSIRP---VPSRWYLGFNLKRPYLQDVRVRLAIAYAINRKELVEKAENG 322
Query: 575 LLEPNWGP-IPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGI------------DPSKYSI 621
L P G +P Y + YN KAKQ+L EAG D +
Sbjct: 323 LGYPAEGTYVPAIKWAYNPNAKLP-EYNPEKAKQLLDEAGFKDINGDGFRETPDGKPLEL 381
Query: 622 KLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEK-GDYDVYVV 674
+L+Y G S I TLI+ +++G KV +ESYE + K K D+D+ +V
Sbjct: 382 RLLYFTG-SDTNAICTLIKEQLAKVGLKVKLESYEIATWEQKVVKERDFDLALV 434
>gb|AAC46283.1| (AF000366) oligopeptide permease homolog AII [Borrelia burgdorferi]
Length = 528
Score = 99.1 bits (243), Expect = 2e-19
Identities = 79/264 (29%), Positives = 122/264 (45%), Gaps = 24/264 (9%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADV- 505
V +GPF +K+ N V E N Y+++ + + Y N + A ++ D
Sbjct: 202 VTSGPFKLKERIPNEKYVFEKNNKYYDSNEVELEEITFYTTNDSSTA-YKMYENEELDAI 260
Query: 506 -AAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPY 564
+IP D I+++K + D Y V + F FNT +P ++VK+R+AL AI
Sbjct: 261 FGSIPPDLIKNLK-LRSDYYSSAVNA------IYFYAFNTHIKPLDNVKIRKALTLAIDR 313
Query: 565 DQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIK----YNYNIAKAKQMLQEAGIDPSKYS 620
+ + V +N P + P ++ Y K +N IAKA +L EAG
Sbjct: 314 ETLTYKVLDN----GTTPTRRATPNFSSYSYAKSLELFNPEIAKA--LLAEAGYPNGNGF 367
Query: 621 --IKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWV 677
+KL YN N +KI IQN W + L V +E+ EW YL+ G+Y++ GW+
Sbjct: 368 PILKLKYNT-NGANKKICEFIQNQWKKNLNIDVELENEEWTTYLNTKANGNYEIARAGWI 426
Query: 678 PDYLDSDNWVGPFLYGATEFKEIN 701
DY D ++ F G T+F N
Sbjct: 427 GDYADPLTFLSIFTQGYTQFSSHN 450
>pir||H70140 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppA-2) homolog - Lyme disease spirochete
>gi|2688227|gb|AAC66707.1| (AE001139) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppA-2) [Borrelia burgdorferi]
>gi|2809545|gb|AAC34991.1| (AF043071) oligopeptide
permease periplasmic binding protein [Borrelia
burgdorferi]
Length = 528
Score = 97.9 bits (240), Expect = 3e-19
Identities = 77/262 (29%), Positives = 120/262 (45%), Gaps = 20/262 (7%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADV- 505
V +GPF +K+ N V E N Y+++ + + Y N + A ++ D
Sbjct: 202 VTSGPFKLKERIPNEKYVFEKNNKYYDSNEVELEEITFYTTNDSSTA-YKMYENEELDAI 260
Query: 506 -AAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPY 564
+IP D I+++K + D Y V + F FNT +P ++VK+R+AL AI
Sbjct: 261 FGSIPPDLIKNLK-LRSDYYSSAVNA------IYFYAFNTHIKPLDNVKIRKALTLAIDR 313
Query: 565 DQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYN--YNIAKAKQMLQEAGIDPSKYS-- 620
+ + V +N P + P ++ Y K +N AK +L EAG
Sbjct: 314 ETLTYKVLDN----GTTPTRRATPNFSSYSYAKSLELFNPEIAKTLLAEAGYPNGNGFPI 369
Query: 621 IKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPD 679
+KL YN N +KI IQN W + L V +E+ EW YL+ G+Y++ GW+ D
Sbjct: 370 LKLKYNT-NEANKKICEFIQNQWKKNLNIDVELENEEWTTYLNTKANGNYEIARAGWIGD 428
Query: 680 YLDSDNWVGPFLYGATEFKEIN 701
Y D ++ F G T+F N
Sbjct: 429 YADPLTFLSIFTQGYTQFSSHN 450
>pir||B75364 extracellular solute-binding protein, family 5 - Deinococcus
radiodurans (strain R1)
>gi|6459480|gb|AAF11267.1|AE002012_7 (AE002012)
extracellular solute-binding protein, family 5
[Deinococcus radiodurans]
Length = 528
Score = 97.5 bits (239), Expect = 5e-19
Identities = 113/468 (24%), Positives = 194/468 (41%), Gaps = 75/468 (16%)
Query: 222 GWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIR 281
G P S D + + ++ DTLV + K+ T E++P LA +W+ NK+ T+W F +R
Sbjct: 30 GDPVSLDSGTIVDGNSSVVQMQVYDTLVKF-KKGTSELAPGLATSWSANKDSTQWTFTLR 88
Query: 282 GGVKAYDPWHDKTYPIDATDVLFTF--WRVARLGHSVSWMVKTFMNVSASQALTEEEFNE 339
GVK D P +A V++ W K+F++ + + E N
Sbjct: 89 KGVKFSDGT-----PFNADAVVYNINRWWDPEASGGAKAQGKSFISWQFTFGGFKGEKNT 143
Query: 340 YLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSV 399
LKS VK++ G+ V L L P+A + A F +
Sbjct: 144 LLKS-------------VKAV----------GQDKVV--LTLTRPFAPLPAAFATTFFGI 178
Query: 400 VPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQE 459
+P A K Q+GA T + PVGTGPF ++ ++
Sbjct: 179 A---------------------SPAAVK---QEGAKYGTPTSL---PVGTGPFVMQSWKT 211
Query: 460 NSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAA-IPTDKIEDVKG 518
IVL+ NP YW + + +++ D R+ L GT D + + ++++ V+G
Sbjct: 212 GDRIVLKPNPNYWG--NKAKYDQLVIRFIKDPSQRLNELKAGTIDFTSDLNPEQLKSVQG 269
Query: 519 VTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEP 578
II ++ L + N + + KVRQA+ AI I +N L E
Sbjct: 270 DKNLKAVIIPSFNVGL-----LSLNHSNKYLKNDKVRQAIGMAINKKAIVDAFWNGLGES 324
Query: 579 NWGPIPKPWPGYTEYGI-IKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGN----SQRE 633
+ +P + Y ++ A AK++L +AG P+ +S+ L Y + +
Sbjct: 325 SSSILPSSLKWADNPSVPADYKFDPAAAKKLLADAGY-PNGFSLDLWYMPVSRPYFPTPK 383
Query: 634 KIMTLIQNIWSQLGFKVTVESYEWPVYL-SKTEKGDYDVYVVGWVPDY 680
I + +G KV +++ +W YL + + +D++++GW Y
Sbjct: 384 PIAEALAADLGAIGIKVNLKTEDWAKYLEDRLKTPGFDMHMIGWTGPY 431
>dbj|BAB06745.1| (AP001517) oligopeptide ABC transpoter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 525
Score = 97.5 bits (239), Expect = 5e-19
Identities = 73/265 (27%), Positives = 122/265 (45%), Gaps = 8/265 (3%)
Query: 428 DYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYII 487
DY + ++++PVGTG + + Q Y+ + N YW+ ++
Sbjct: 183 DYEAMANGEEPFSYINEHPVGTGFYRYEGAQNGEYVKVVKNENYWDREQAKSDALTFKVV 242
Query: 488 NSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKE 547
D + RV L TG AD+ P + DV + + + ++K+ LT++ FNT KE
Sbjct: 243 PED-LTRVAELETGEADII-YPVNP-NDVNRIEQHHGTKVLKSPS--SNLTYLGFNTTKE 297
Query: 548 PFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQ 607
PFND VRQA+A AI + I + N + P GP+ GY + ++ +AK
Sbjct: 298 PFNDPLVRQAIAKAIDQEGIINGILNGMALPAKGPLAPTVFGYDDQ-FSAAKKDVEEAKA 356
Query: 608 MLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKG 667
+L EAG P+ + ++ N + + I +Q +G V VE+ E +L G
Sbjct: 357 LLDEAGY-PNGFETTIVSNDTRAFMD-IAVFVQQELQAIGIDVQVETVETSTFLELAGNG 414
Query: 668 DYDVYVVGWVPDYLDSDNWVGPFLY 692
D +++V W LD+D + P +
Sbjct: 415 DTEMFVSSWGTVTLDADYGLYPMFH 439
>sp|P45285|SAPA_HAEIN PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA PRECURSOR
>gi|1075117|pir||A64134 periplasmic dipeptide transport
protein dppA homolog - Haemophilus influenzae (strain Rd
KW20) >gi|1574486|gb|AAC23285.1| (U32837) peptide ABC
transporter, periplasmic-binding protein (sapA)
[Haemophilus influenzae Rd]
Length = 565
Score = 97.5 bits (239), Expect = 5e-19
Identities = 119/512 (23%), Positives = 214/512 (41%), Gaps = 58/512 (11%)
Query: 199 APVVPTGVGDYNNDPETYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKE 258
AP VPT + + T+ P++ D + +I++++ D K ++
Sbjct: 24 APSVPTFLTENGLTYCTHASGFSFNPQTADAGTSMNVVTEQIYNKLFDI-----KNHSAT 78
Query: 259 VSPDLAVAWAHNKEGTEWYFVIRGGVKAYD-PWHDKTYPIDATDVLFTFWRVARLGHSVS 317
++P LA +++ + +G E +R GVK + PW T +A DV+F+ RV GH+
Sbjct: 79 LTPMLAQSYSISADGKEILLNLRHGVKFHQTPWFTPTRDFNAEDVVFSINRVLG-GHNTY 137
Query: 318 WMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVF 377
NV+ S + K + ++KS+ L +
Sbjct: 138 LPTLAETNVTYSNPQYRVFHEQARKVRFPYFDSIKLNEKIKSVTALSPY---------QV 188
Query: 378 KLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
K+ L P ++IL+ +A + + EY Q A+D
Sbjct: 189 KIELFAPDSSILSHLASQYAIIFSQEYAY------------------------QLSADDN 224
Query: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQL 497
QL +PVGTGP+ VKDY N Y+ L N YW H +I +++D R+
Sbjct: 225 LAQL-DTHPVGTGPYQVKDYVYNQYVRLVRNENYWKKEAKIEH--IIVDLSTDRSGRLVK 281
Query: 498 LTTGTADVAAIPTDKIEDVKGVTK--DNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVR 555
+A+ P ++ + G+ K D + + TD + L ++ FN K D ++R
Sbjct: 282 FFNNECQIASYP--EVSQI-GLLKNDDKHYYMQSTDGM--NLAYLAFNFDKPLMRDHEIR 336
Query: 556 QALAYAIPYDQIAKVVYNNLLEPNWGPIPK-PWPGYTEYGIIKYNYNIAKAKQMLQEAGI 614
A++ ++ +I +Y+N IP+ W +++YN AK L + +
Sbjct: 337 AAISQSLNRARIIHSIYHNTATVANNIIPEVSWASSVNTPEFEFDYNPKIAKNKLADKNL 396
Query: 615 DPSKYSI--KLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLS--KTEKGDYD 670
+ + I + +YN KI +I+ +Q G KV V + P + + + +YD
Sbjct: 397 LLNLWVINEEQVYNPAPF---KIAEMIKWDLAQAGVKVKVRAVTRPFLTAQLRNQSENYD 453
Query: 671 VYVVGWVPDYLDSDNWVGPFLYGATEFKEINI 702
+ + GW+ LD D ++ P L T+ + N+
Sbjct: 454 LILSGWLAGNLDPDGFMRPILSCGTKNELTNL 485
>emb|CAA10909.1| (AJ222649) sapA [Erwinia chrysanthemi]
Length = 540
Score = 97.1 bits (238), Expect = 6e-19
Identities = 68/267 (25%), Positives = 124/267 (45%), Gaps = 11/267 (4%)
Query: 428 DYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYII 487
+Y Q+ +L+ + PVGTGP+ ++ Y+ ++ L+ N YW P ++V+ +
Sbjct: 196 EYAQQLTRQDGRELLDRQPVGTGPYRLEQYRYGQFVRLKRNNNYWRG--RPLMEQVVVDL 253
Query: 488 NSDAVARVQLLTTGTADVAAIP-TDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQK 546
S R+ L TG DV A P ++ ++ + + ++ ++ FN +K
Sbjct: 254 GSGGTGRLSKLLTGECDVLAYPAASQLSILRNDPRLRLSLRPGMNV-----AYLAFNVRK 308
Query: 547 EPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAK 606
P +D +VR A+A AI D++ + +Y E +P+ Y + YN KA+
Sbjct: 309 PPLDDARVRHAVALAINNDRLMQSIYYGTAETAASILPRASWAYDNEAQVT-EYNPEKAR 367
Query: 607 QMLQEAGIDPSKYS--IKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKT 664
Q+L+E GI + + + N K LIQ +Q+G +VT+ E ++
Sbjct: 368 QLLKELGITHLQLQLWVPSASQSYNPSPVKTAELIQADLAQVGIQVTIVPVEGRFQEARL 427
Query: 665 EKGDYDVYVVGWVPDYLDSDNWVGPFL 691
+ ++D+ + GW D D D+ P L
Sbjct: 428 MEMNHDLTLAGWATDSNDPDSVFRPLL 454
>sp|Q47622|SAPA_ECOLI PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA PRECURSOR
>gi|7442324|pir||A64878 peptide transport periplasmic
protein sapA precursor - Escherichia coli
>gi|1279400|emb|CAA65937.1| (X97282) SapA protein
[Escherichia coli] >gi|1787551|gb|AAC74376.1| (AE000227)
homolog of Salmonella peptide transport periplasmic
protein [Escherichia coli K12]
Length = 547
Score = 96.3 bits (236), Expect = 1e-18
Identities = 106/450 (23%), Positives = 177/450 (38%), Gaps = 65/450 (14%)
Query: 256 TKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDP-WHDKTYPIDATDVLFTFWRVARLGH 314
T + P+LA +W G + F +R V W T ++A DV+FTF R+
Sbjct: 76 TYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFTPTRKMNADDVVFTFQRI--FDR 133
Query: 315 SVSWMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETA 374
+ W N +L +F + +KS V + T E +
Sbjct: 134 NNPWHNVNGSNFPYFDSL---QFADNVKS---VRKLDNHTVEFR---------------- 171
Query: 375 GVFKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGA 434
L P A+ L +A + SV+ EY +K
Sbjct: 172 ------LAQPDASFLWHLATHYASVMSAEY-------------------------ARKLE 200
Query: 435 NDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVAR 494
+ + + + PVGTGP+ + +Y+ +I L+ + +W P +V+ + S R
Sbjct: 201 KEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRG--KPLMPQVVVDLGSGGTGR 258
Query: 495 VQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKV 554
+ L TG DV A P + +D+ + + + V ++ FNT K P N+ V
Sbjct: 259 LSKLLTGECDVLAWPA---ASQLSILRDDPRLRLTLRPGMNV-AYLAFNTAKPPLNNPAV 314
Query: 555 RQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGI 614
R ALA AI ++ + +Y E +P+ Y I YN AK+++ L+ G+
Sbjct: 315 RHALALAINNQRLMQSIYYGTAETAASILPRASWAYDNEAKIT-EYNPAKSREQLKSLGL 373
Query: 615 D--PSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVY 672
+ K + A N K LIQ +Q+G KV + E ++ +D+
Sbjct: 374 ENLTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLT 433
Query: 673 VVGWVPDYLDSDNWVGPFLYGATEFKEINI 702
+ GW D D D++ P L A + N+
Sbjct: 434 LSGWATDSNDPDSFFRPLLSCAAIHSQTNL 463
>dbj|BAA14855.1| (D90767) Peptide transport periplasmic protein SapA precursor.
[Escherichia coli] >gi|1742125|dbj|BAA14864.1| (D90768)
Peptide transport periplasmic protein SapA precursor.
[Escherichia coli]
Length = 547
Score = 96.3 bits (236), Expect = 1e-18
Identities = 106/450 (23%), Positives = 177/450 (38%), Gaps = 65/450 (14%)
Query: 256 TKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDP-WHDKTYPIDATDVLFTFWRVARLGH 314
T + P+LA +W G + F +R V W T ++A DV+FTF R+
Sbjct: 76 TYRLMPELAESWEVLDNGATYRFHLRRDVPFQKTDWFTPTRKMNADDVVFTFQRI--FDR 133
Query: 315 SVSWMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETA 374
+ W N +L +F + +KS V + T E +
Sbjct: 134 NNPWHNVNGSNFPYFDSL---QFADNVKS---VRKLDNHTVEFR---------------- 171
Query: 375 GVFKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGA 434
L P A+ L +A + SV+ EY +K
Sbjct: 172 ------LAQPDASFLWHLATHYASVMSAEY-------------------------ARKLE 200
Query: 435 NDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVAR 494
+ + + + PVGTGP+ + +Y+ +I L+ + +W P +V+ + S R
Sbjct: 201 KEDRQEQLDRQPVGTGPYQLSEYRAGQFIRLQRHDDFWRG--KPLMPQVVVDLGSGGTGR 258
Query: 495 VQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKV 554
+ L TG DV A P + +D+ + + + V ++ FNT K P N+ V
Sbjct: 259 LSKLLTGECDVLAWPA---ASQLSILRDDPRLRLTLRPGMNV-AYLAFNTAKPPLNNPAV 314
Query: 555 RQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGI 614
R ALA AI ++ + +Y E +P+ Y I YN AK+++ L+ G+
Sbjct: 315 RHALALAINNQRLMQSIYYGTAETAASILPRASWAYDNEAKIT-EYNPAKSREQLKSLGL 373
Query: 615 D--PSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVY 672
+ K + A N K LIQ +Q+G KV + E ++ +D+
Sbjct: 374 ENLTLKLWVPTRSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLT 433
Query: 673 VVGWVPDYLDSDNWVGPFLYGATEFKEINI 702
+ GW D D D++ P L A + N+
Sbjct: 434 LSGWATDSNDPDSFFRPLLSCAAIHSQTNL 463
>sp|P06202|OPPA_SALTY PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PRECURSOR
>gi|72428|pir||QREBOA oligopeptide-binding protein
precursor - Salmonella typhimurium
>gi|47802|emb|CAA29039.1| (X05491) Opp A (AA1-542)
[Salmonella typhimurium] >gi|47808|emb|CAA27785.1|
(X04194) precursor polypeptide [Salmonella typhimurium]
Length = 542
Score = 94.8 bits (232), Expect = 3e-18
Identities = 113/446 (25%), Positives = 181/446 (40%), Gaps = 85/446 (19%)
Query: 260 SPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWM 319
SP +A W NK+ W F +R K W D T P+ A D ++++ R+A
Sbjct: 82 SPGVAEKW-ENKDFKVWTFHLRENAK----WSDGT-PVTAHDFVYSWQRLA--------- 126
Query: 320 VKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKL 379
T + YL+ + +A K +L G K F++
Sbjct: 127 ----------DPNTASPYASYLQ-YGHIANIDDIIAGKKPATDL----GVKALDDHTFEV 171
Query: 380 VLPHPYAAILNVVADPFLSVVPMEYL--LGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
L P ++ P +S VP + GDK+ + AN
Sbjct: 172 TLSEPVPYFYKLLVHPSVSPVPKSAVEKFGDKWTQP--------------------ANIV 211
Query: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQL 497
T+ G + +K++ N IVLE NP YW+ ++ V Y+ S V V
Sbjct: 212 TN----------GAYKLKNWVVNERIVLERNPQYWDNAKTVINQ-VTYLPISSEVTDVNR 260
Query: 498 LTTGTADVAA--IPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVR 555
+G D+ +P + + +K + V+ D L + + N QK PFNDV+VR
Sbjct: 261 YRSGEIDMTYNNMPIELFQKLKKEIPNE----VRVDPYLCTYYYEI-NNQKAPFNDVRVR 315
Query: 556 QALAYAIPYDQIAKVVYNNLLEPNWGPIPKPW--------PGYTEYGIIKYNYNIAKAKQ 607
AL A+ D I V N P + P P+ P + ++ K N +AK+
Sbjct: 316 TALKLALDRDIIVNKVKNQGDLPAYSYTP-PYTDGAKLVEPEWFKWSQQKRN---EEAKK 371
Query: 608 MLQEAGIDPSK-YSIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTE 665
+L EAG K + L+YN + + K+ + +IW + LG V +E+ EW +L
Sbjct: 372 LLAEAGFTADKPLTFDLLYNTSDLHK-KLAIAVASIWKKNLGVNVNLENQEWKTFLDTRH 430
Query: 666 KGDYDVYVVGWVPDYLDSDNWVGPFL 691
+G +DV GW DY + +++ L
Sbjct: 431 QGTFDVARAGWCADYNEPTSFLNTML 456
>pdb|1JET|A Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed With Kak
>gi|2194062|pdb|1JEU|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kek >gi|2194057|pdb|1JEV|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kwk >gi|1310734|pdb|2OLB|A Chain A, Oligopeptide
Binding Protein (Oppa) Complexed With Tri-Lysine
>gi|4139566|pdb|1B32|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kmk >gi|6729871|pdb|1B4Z|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kdk >gi|6137589|pdb|1QKB|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Kvk
>gi|4389358|pdb|1B46|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kpk >gi|6137472|pdb|1QKA|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Krk >gi|4389026|pdb|1B51|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Ksk
>gi|4139989|pdb|1B1H|A Chain A, Oligo-Peptide Binding
ProteinTRIPEPTIDE (LYS HPE LYS) Complex
>gi|4139619|pdb|1B3F|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Khk >gi|6729873|pdb|1B58|A
Chain A, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kyk >gi|4389332|pdb|1B5J|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Kqk
>gi|4139999|pdb|1B6H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl-Norvalyl- Lysine
>gi|4558066|pdb|1B9J|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Klk >gi|2392717|pdb|2RKM|A
Chain A, Structure Of Oppa Complexed With Lys-Lys
>gi|4139991|pdb|1B2H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl-Ornithyl- Lysine
>gi|4139980|pdb|1B0H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Napthylalanyl-Lysine
>gi|4139995|pdb|1B4H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Diaminobutyric Acid-Lysine
>gi|4139997|pdb|1B5H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Diaminopropanoic
Acid-Lysine >gi|4389330|pdb|1B5I|A Chain A,
Oligo-Peptide Binding Protein (Oppa) Complexed With Knk
>gi|4139623|pdb|1B3L|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kgk >gi|4139625|pdb|1B3L|C
Chain C, Oligo-Peptide Binding Protein (Oppa) Complexed
With Kgk >gi|4139621|pdb|1B3G|A Chain A, Oligo-Peptide
Binding Protein (Oppa) Complexed With Kik
>gi|4139993|pdb|1B3H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Cyclohexylalanyl-Lysine
>gi|4139926|pdb|1B7H|A Chain A, Oligo-Peptide Binding
Protein Complexed With Lysyl- Norleucyl-Lysine
>gi|1310797|pdb|1OLC|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Lys-Lys-Lys-Ala
>gi|6729986|pdb|1B40|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With Kfk >gi|2392536|pdb|1RKM|
Structure Of Oppa >gi|4388950|pdb|1B52|A Chain A,
Oligo-Peptide Binding Protein (Oppa) Complexed With Ktk
>gi|576223|pdb|1OLA|A Chain A, Oligo-Peptide Binding
Protein (Oppa) Complexed With A Four-Residue Peptide
Length = 517
Score = 94.8 bits (232), Expect = 3e-18
Identities = 113/446 (25%), Positives = 181/446 (40%), Gaps = 85/446 (19%)
Query: 260 SPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWM 319
SP +A W NK+ W F +R K W D T P+ A D ++++ R+A
Sbjct: 57 SPGVAEKW-ENKDFKVWTFHLRENAK----WSDGT-PVTAHDFVYSWQRLA--------- 101
Query: 320 VKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKL 379
T + YL+ + +A K +L G K F++
Sbjct: 102 ----------DPNTASPYASYLQ-YGHIANIDDIIAGKKPATDL----GVKALDDHTFEV 146
Query: 380 VLPHPYAAILNVVADPFLSVVPMEYL--LGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
L P ++ P +S VP + GDK+ + AN
Sbjct: 147 TLSEPVPYFYKLLVHPSVSPVPKSAVEKFGDKWTQP--------------------ANIV 186
Query: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQL 497
T+ G + +K++ N IVLE NP YW+ ++ V Y+ S V V
Sbjct: 187 TN----------GAYKLKNWVVNERIVLERNPQYWDNAKTVINQ-VTYLPISSEVTDVNR 235
Query: 498 LTTGTADVAA--IPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVR 555
+G D+ +P + + +K + V+ D L + + N QK PFNDV+VR
Sbjct: 236 YRSGEIDMTYNNMPIELFQKLKKEIPNE----VRVDPYLCTYYYEI-NNQKAPFNDVRVR 290
Query: 556 QALAYAIPYDQIAKVVYNNLLEPNWGPIPKPW--------PGYTEYGIIKYNYNIAKAKQ 607
AL A+ D I V N P + P P+ P + ++ K N +AK+
Sbjct: 291 TALKLALDRDIIVNKVKNQGDLPAYSYTP-PYTDGAKLVEPEWFKWSQQKRN---EEAKK 346
Query: 608 MLQEAGIDPSK-YSIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTE 665
+L EAG K + L+YN + + K+ + +IW + LG V +E+ EW +L
Sbjct: 347 LLAEAGFTADKPLTFDLLYNTSDLHK-KLAIAVASIWKKNLGVNVNLENQEWKTFLDTRH 405
Query: 666 KGDYDVYVVGWVPDYLDSDNWVGPFL 691
+G +DV GW DY + +++ L
Sbjct: 406 QGTFDVARAGWCADYNEPTSFLNTML 431
>pdb|1B05|A Chain A, Structure Of Oligo-Peptide Binding Protein Complexed With
Lys-Cys-Lys
Length = 517
Score = 94.8 bits (232), Expect = 3e-18
Identities = 113/446 (25%), Positives = 181/446 (40%), Gaps = 85/446 (19%)
Query: 260 SPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWM 319
SP +A W NK+ W F +R K W D T P+ A D ++++ R+A
Sbjct: 57 SPGVAEKW-ENKDFKVWTFHLRENAK----WSDGT-PVTAHDFVYSWQRLA--------- 101
Query: 320 VKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKL 379
T + YL+ + +A K +L G K F++
Sbjct: 102 ----------DPNTASPYASYLQ-YGHIANIDDIIAGKKPATDL----GVKALDDHTFEV 146
Query: 380 VLPHPYAAILNVVADPFLSVVPMEYL--LGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
L P ++ P +S VP + GDK+ + AN
Sbjct: 147 TLSEPVPYFYKLLVHPSVSPVPKSAVEKFGDKWTQP--------------------ANIV 186
Query: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQL 497
T+ G + +K++ N IVLE NP YW+ ++ V Y+ S V V
Sbjct: 187 TN----------GAYKLKNWVVNERIVLERNPQYWDNAKTVINQ-VTYLPISSEVTDVNR 235
Query: 498 LTTGTADVAA--IPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVR 555
+G D+ +P + + +K + V+ D L + + N QK PFNDV+VR
Sbjct: 236 YRSGEIDMTYNNMPIELFQKLKKEIPNE----VRVDPYLCTYYYEI-NNQKAPFNDVRVR 290
Query: 556 QALAYAIPYDQIAKVVYNNLLEPNWGPIPKPW--------PGYTEYGIIKYNYNIAKAKQ 607
AL A+ D I V N P + P P+ P + ++ K N +AK+
Sbjct: 291 TALKLALDRDIIVNKVKNQGDLPAYSYTP-PYTDGAKLVEPEWFKWSQQKRN---EEAKK 346
Query: 608 MLQEAGIDPSK-YSIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTE 665
+L EAG K + L+YN + + K+ + +IW + LG V +E+ EW +L
Sbjct: 347 LLAEAGFTADKPLTFDLLYNTSDLHK-KLAIAVASIWKKNLGVNVNLENQEWKTFLDTRH 405
Query: 666 KGDYDVYVVGWVPDYLDSDNWVGPFL 691
+G +DV GW DY + +++ L
Sbjct: 406 QGTFDVARAGWCADYNEPTSFLNTML 431
>gi|11497010 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppAIV) [Borrelia burgdorferi]
>gi|7442333|pir||D70218 oligopeptide ABC transporter,
periplasmic oligopeptide-binding protein (oppAIV)
homolog - Lyme disease spirochete plasmid B/cp26
>gi|2281468|gb|AAC46280.1| (AF000948) OppAIV [Borrelia
burgdorferi] >gi|2689891|gb|AAC66315.1| (AE000792)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein (oppAIV) [Borrelia
burgdorferi]
Length = 530
Score = 93.6 bits (229), Expect = 7e-18
Identities = 74/267 (27%), Positives = 126/267 (46%), Gaps = 22/267 (8%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V +GPF +K N +VLE N Y+N+ D +I+ + +++ + D
Sbjct: 205 VVSGPFKLKSRVLNEKVVLEKNNKYYNSKDVVLDS-IIFFVTDNSITAYNMYLNDELDAI 263
Query: 507 A--IPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPY 564
+P D ++D+K + D Y + + + +F N + +P ++VKVR+AL++AI
Sbjct: 264 FKNVPPDLLKDLK-LRDDYYSMGINST------SFYSLNMKVKPLDNVKVRKALSFAID- 315
Query: 565 DQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYN---YNIAKAKQMLQEAGIDPSKYS- 620
K + ++L + P + P Y +Y K N ++ AK++L +AG
Sbjct: 316 ---RKTLTESVLNDSSIPTRRATPDYIDYSY-KSNLSLFDAEMAKKLLADAGYPNGNNFP 371
Query: 621 -IKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVP 678
+K+ YN +SQR KI IQN W + L V +E+ EW Y++ G+Y++ GW
Sbjct: 372 LLKVKYNTSDSQR-KIAEFIQNQWKKNLNINVQLENEEWSTYINSRVNGNYEIIRSGWSG 430
Query: 679 DYLDSDNWVGPFLYGATEFKEINIETS 705
DY D ++ F T F S
Sbjct: 431 DYADPMTFLSIFQTENTSFSSYGYSNS 457
>sp|P36634|SAPA_SALTY PEPTIDE TRANSPORT PERIPLASMIC PROTEIN SAPA PRECURSOR
>gi|628817|pir||S39585 peptide transport periplasmic
protein sapA precursor - Salmonella typhimurium
>gi|414208|emb|CAA52284.1| (X74212) sapA [Salmonella
typhimurium]
Length = 549
Score = 93.2 bits (228), Expect = 9e-18
Identities = 107/441 (24%), Positives = 173/441 (38%), Gaps = 69/441 (15%)
Query: 256 TKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDP-WHDKTYPIDATDVLFTFWRVARLGH 314
T + P+LA +W G + F +R V W T ++A DV+FTF R+ H
Sbjct: 78 TYRLVPELAESWEVLDNGATYRFHLRRDVSFQKTAWFTPTRKLNADDVVFTFQRIFDRRH 137
Query: 315 SVSWMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETA 374
W +N S+ +F + +KS V T E +
Sbjct: 138 P--WHN---INGSSFPYFDSLQFADNVKS---VRNVDNNTVEFR---------------- 173
Query: 375 GVFKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGA 434
L P A+ L +A + SV+ EY Q
Sbjct: 174 ------LTQPDASFLWHLATHYASVMSAEYA------------------------AQLSR 203
Query: 435 NDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVAR 494
D +L+ + PVGTGPF + +Y+ +I L+ + +W P +V+ + S R
Sbjct: 204 KDR-QELLDRQPVGTGPFQLSEYRAGQFIRLQRHDGFWRG--KPLMPQVVVDLGSGGTGR 260
Query: 495 VQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLP--VLTFIVFNTQKEPFNDV 552
+ L TG DV A P + +D+ + + L P + ++ FNT K P N+
Sbjct: 261 LSKLLTGECDVLAWPA---ASQLTILRDDPRLRL---TLRPGMNIAYLAFNTDKPPLNNP 314
Query: 553 KVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEA 612
VR ALA +I ++ + +Y E +P+ Y I YN K+++ L+
Sbjct: 315 AVRHALALSINNQRLMQSIYYGTAETAASILPRASWAYDNDAKIT-EYNPQKSREQLKAL 373
Query: 613 GIDPSKYS--IKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYD 670
GI+ + A N K LIQ +Q+G KV + E ++ ++D
Sbjct: 374 GIENLTLHLWVPTSSQAWNPSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMNHD 433
Query: 671 VYVVGWVPDYLDSDNWVGPFL 691
+ + GW D D D++ P L
Sbjct: 434 LTLSGWATDSNDPDSFFRPLL 454
>pir||D64882 periplasmic oligopeptide-binding protein precursor - Escherichia
coli >gi|1742186|dbj|BAA14922.1| (D90771) Periplasmic
oligopeptide-binding protein precursor. [Escherichia
coli] >gi|1742197|dbj|BAA14932.1| (D90772) Periplasmic
oligopeptide-binding protein precursor. [Escherichia
coli] >gi|1787590|gb|AAC74411.1| (AE000231) putative
transport periplasmic protein [Escherichia coli K12]
Length = 544
Score = 90.5 bits (221), Expect = 6e-17
Identities = 112/473 (23%), Positives = 189/473 (39%), Gaps = 93/473 (19%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTLVTYWKENTK-EVSPDLAVAWAHNKEGTEWYFVIRG 282
P S DPA ++ ++ + LV +N K E+ P +A W N + W F +R
Sbjct: 52 PASLDPAKAVGLPEIQVIRDLFEGLVN---QNEKGEIVPGVATQWKSN-DNRIWTFTLRD 107
Query: 283 GVKAYDPWHDKTYPIDATDVLFTFWRVA--RLGHSVSWMVKTFMNVSASQALTEEEFNEY 340
K W D T P+ A D ++++ R+ + +W ++ +QA+ +
Sbjct: 108 NAK----WADGT-PVTAQDFVYSWQRLVDPKTLSPFAWFA-ALAGINNAQAIID------ 155
Query: 341 LKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVV 400
GK T D G A K+ L P +N+ A+ +
Sbjct: 156 -----------GKATP--------DQLGVTAVDAHTLKIQLDKPLPWFVNLTAN--FAFF 194
Query: 401 PMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQEN 460
P++ KA N ++ K++ + G +G G + +K+ N
Sbjct: 195 PVQ-----------KA-----NVESGKEWTKPGNL-----------IGNGAYVLKERVVN 227
Query: 461 SYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVT 520
+V+ N +YW+ K IN ++ A + L G D+ +
Sbjct: 228 EKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLA-GDIDIT----------ESFP 276
Query: 521 KDNYEIIVKTDILLPVLT-------FIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYN 573
K+ Y+ ++K DI V T + FNTQK P D +VR AL+ I + + V
Sbjct: 277 KNMYQKLLK-DIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLG 335
Query: 574 NLLEPNWGPIPKPWPGYTE----YGIIKYNYNIAKAKQMLQEAGIDPSK-YSIKLIYNAG 628
+P W P G+T + + A+AK +L AG P K + L+YN
Sbjct: 336 TGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTS 395
Query: 629 NSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDY 680
+ +KI + ++W + LG V +++ EW Y+ G++DV WV DY
Sbjct: 396 ENH-QKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDY 447
>sp|P77348|MPPA_ECOLI PERIPLASMIC MUREIN PEPTIDE-BINDING PROTEIN PRECURSOR
>gi|2935635|gb|AAC38216.1| (U88242) periplasmic murein
peptide binding protein precursor [Escherichia coli]
Length = 537
Score = 90.5 bits (221), Expect = 6e-17
Identities = 112/473 (23%), Positives = 189/473 (39%), Gaps = 93/473 (19%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTLVTYWKENTK-EVSPDLAVAWAHNKEGTEWYFVIRG 282
P S DPA ++ ++ + LV +N K E+ P +A W N + W F +R
Sbjct: 45 PASLDPAKAVGLPEIQVIRDLFEGLVN---QNEKGEIVPGVATQWKSN-DNRIWTFTLRD 100
Query: 283 GVKAYDPWHDKTYPIDATDVLFTFWRVA--RLGHSVSWMVKTFMNVSASQALTEEEFNEY 340
K W D T P+ A D ++++ R+ + +W ++ +QA+ +
Sbjct: 101 NAK----WADGT-PVTAQDFVYSWQRLVDPKTLSPFAWFA-ALAGINNAQAIID------ 148
Query: 341 LKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVV 400
GK T D G A K+ L P +N+ A+ +
Sbjct: 149 -----------GKATP--------DQLGVTAVDAHTLKIQLDKPLPWFVNLTAN--FAFF 187
Query: 401 PMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQEN 460
P++ KA N ++ K++ + G +G G + +K+ N
Sbjct: 188 PVQ-----------KA-----NVESGKEWTKPGNL-----------IGNGAYVLKERVVN 220
Query: 461 SYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVT 520
+V+ N +YW+ K IN ++ A + L G D+ +
Sbjct: 221 EKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLA-GDIDIT----------ESFP 269
Query: 521 KDNYEIIVKTDILLPVLT-------FIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYN 573
K+ Y+ ++K DI V T + FNTQK P D +VR AL+ I + + V
Sbjct: 270 KNMYQKLLK-DIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLG 328
Query: 574 NLLEPNWGPIPKPWPGYTE----YGIIKYNYNIAKAKQMLQEAGIDPSK-YSIKLIYNAG 628
+P W P G+T + + A+AK +L AG P K + L+YN
Sbjct: 329 TGEKPAWHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTS 388
Query: 629 NSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDY 680
+ +KI + ++W + LG V +++ EW Y+ G++DV WV DY
Sbjct: 389 ENH-QKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDY 440
>emb|CAA40006.1| (X56678) dciAE [Bacillus subtilis]
Length = 543
Score = 88.9 bits (217), Expect = 2e-16
Identities = 106/482 (21%), Positives = 188/482 (38%), Gaps = 85/482 (17%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGG 283
P SFDP + W+ + I + L K++ E P +A W+ +K+ + F IR
Sbjct: 54 PTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEPE--PAMAEKWSVSKDNKTYTFTIREN 111
Query: 284 VKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKS 343
K W + P+ A D + + R+ + + + +++
Sbjct: 112 AK----WTNGD-PVTAGDFEYAWKRM----------------LDPKKGASSAFLGYFIEG 150
Query: 344 HPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPME 403
GK +VK + ++ L P L+VV++P
Sbjct: 151 GEAYNSGKGKKDDVK----------VTAKDDRTLEVTLEAPQKYFLSVVSNP-------- 192
Query: 404 YLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYI 463
+ + N KD + A T VG GPF + +++ + I
Sbjct: 193 -------------AYFPVNEKVDKDNPKWFAESDTF-------VGNGPFKLTEWKHDDSI 232
Query: 464 VLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDN 523
+E + YW+ D +V + + SD Q+ +G D A +P + + + + +DN
Sbjct: 233 TMEKSDTYWDK-DTVKLDKVKWAMVSDRNTDYQMFQSGELDTAYVPAELSDQL--LDQDN 289
Query: 524 YEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPI 583
I+ + L F FN EPF + +R+A A A+ ++I K V N +P +
Sbjct: 290 VNIVDQAG-----LYFYRFNVNMEPFQNENIRKAFAMAVDQEEIVKYVTKNNEKPAHAFV 344
Query: 584 PKPWPGYT--------EYGIIKYNYNIAKAKQMLQEAGIDPSKY----SIKLIYNAGNSQ 631
PG+T E G N +KAKQ+L E G+ Y +I L Y+
Sbjct: 345 S---PGFTQPDGKDFREAGGDLIKPNESKAKQLL-EKGMKEENYNKLPAITLTYSTKPEH 400
Query: 632 REKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFL 691
++ + Q + + LG V + + EW V+L + + ++PDY D +++ F
Sbjct: 401 KKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKALKFQFSQSSFLPDYADPISFLEAFQ 460
Query: 692 YG 693
G
Sbjct: 461 TG 462
>pir||A82356 peptide ABC transporter, periplasmic peptide-binding protein VC0171
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9654574|gb|AAF93347.1| (AE004107) peptide ABC
transporter, periplasmic peptide-binding protein [Vibrio
cholerae]
Length = 542
Score = 88.5 bits (216), Expect = 2e-16
Identities = 119/467 (25%), Positives = 191/467 (40%), Gaps = 83/467 (17%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGG 283
P S DP ++ H + D L+ + ++ E P LA +W T F +R G
Sbjct: 58 PVSMDPHEQLSGGTLQLSHMVFDPLIRFTQK--MEFEPRLAESWQRVDNET-MRFTLRKG 114
Query: 284 VKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKS 343
VK + +D T A DV++TF R+
Sbjct: 115 VK-FHSGNDFT----ADDVVWTFNRLKES------------------------------- 138
Query: 344 HPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPME 403
A++ G + SL ++ D + + +TAG + L I NV F PM+
Sbjct: 139 ----ADFKGIFEPLVSLTKV-DDYTIEIKTAGTYPL--------IENVATYIF----PMD 181
Query: 404 YLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYI 463
K+ A GKN + V+ G + A+ + GTGPF V ++ +
Sbjct: 182 ----SKFYTGTTAD--GKNK---AEIVKHGNSFASENIS-----GTGPFTVTAREQGVKL 227
Query: 464 VLEYNPYYWN-ATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAI-PTD--KIEDVKGV 519
+ NP YW+ A+ K + +I DA LL+ G +A + P D +I+D KGV
Sbjct: 228 EFQRNPNYWDKASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGV 287
Query: 520 TKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPN 579
+ T V+TF + DV+VRQA+ YAI + I V
Sbjct: 288 D-------LFTMPGTRVITFQMNQNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTA 340
Query: 580 WGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLI 639
P + GY E +K +++ KAK++++EAG + + N EKI
Sbjct: 341 AQQSPVGYAGYNEN--LKPRFDLNKAKELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAA 398
Query: 640 QNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNW 686
+ S++G KV +++ Y + +K D+ ++GW PD DS N+
Sbjct: 399 SAMLSKIGIKVDLKTMPKAQYWPEFDKCAADMLMIGWHPDTEDSANF 445
>pir||S16651 dciAE protein - Bacillus subtilis
Length = 543
Score = 88.2 bits (215), Expect = 3e-16
Identities = 106/482 (21%), Positives = 188/482 (38%), Gaps = 85/482 (17%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGG 283
P SFDP + W+ + I + L K++ E P +A W+ +K+ + F IR
Sbjct: 54 PTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEPE--PAMAEKWSVSKDNKTYTFTIREN 111
Query: 284 VKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKS 343
K W + P+ A D + + R+ + + + +++
Sbjct: 112 AK----WTNGD-PVTAGDFEYAWKRM----------------LDPKKGASSAFLGYFIEG 150
Query: 344 HPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPME 403
GK +VK + ++ L P L+VV++P
Sbjct: 151 GEAYNSGKGKKDDVK----------VTAKDDRTLEVTLEAPQKYFLSVVSNP-------- 192
Query: 404 YLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYI 463
+ + N KD + A T VG GPF + +++ + I
Sbjct: 193 -------------AYFPVNEKVDKDNPKWFAESDTF-------VGNGPFKLTEWKHDDSI 232
Query: 464 VLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDN 523
+E + YW+ D +V + + SD Q+ +G D A +P + + + + +DN
Sbjct: 233 TMEKSDTYWDK-DTVKLDKVKWAMVSDRNTDYQMKQSGELDTAYVPAELSDQL--LDQDN 289
Query: 524 YEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPI 583
I+ + L F FN EPF + +R+A A A+ ++I K V N +P +
Sbjct: 290 VNIVDQAG-----LYFYRFNVNMEPFQNENIRKAFAMAVDQEEIVKYVTKNNEKPAHAFV 344
Query: 584 PKPWPGYT--------EYGIIKYNYNIAKAKQMLQEAGIDPSKY----SIKLIYNAGNSQ 631
PG+T E G N +KAKQ+L E G+ Y +I L Y+
Sbjct: 345 S---PGFTQPDGKDFREAGGDLIKPNESKAKQLL-EKGMKEENYNKLPAITLTYSTKPEH 400
Query: 632 REKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFL 691
++ + Q + + LG V + + EW V+L + + ++PDY D +++ F
Sbjct: 401 KKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKALKFQFSQSSFLPDYADPISFLEAFQ 460
Query: 692 YG 693
G
Sbjct: 461 TG 462
>emb|CAB95801.1| (AL359949) putative solute binding transport lipoprotein
[Streptomyces coelicolor A3(2)]
Length = 530
Score = 87.8 bits (214), Expect = 4e-16
Identities = 66/252 (26%), Positives = 124/252 (49%), Gaps = 11/252 (4%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
VG+GP+ +K Y++ L N Y + +K V D+ V+ L G V
Sbjct: 194 VGSGPYTLKSYEDGERAELVRNDRYKGFAERQ-NKAVTVRYFKDSAGMVKALRDGDIQVT 252
Query: 507 --AIPTDKIEDVKGVT--KDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAI 562
+ D + ++G ++ +++ T ++++VFN + +VRQA+A I
Sbjct: 253 YRGLAADDVITLQGKEGKEEGLQLVEGTGT---EISYLVFNPEDPWAGRKEVRQAVAQVI 309
Query: 563 PYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKY-NYNIAKAKQMLQEAGI-DPSKYS 620
IA +Y + ++P + +PK G+T Y + +I KA+++L++A I +P +
Sbjct: 310 DRTVIAHKIYQDTVDPLYSMVPKGLTGHTTGFFDDYGDPSIPKAREILRDADITEPVPLT 369
Query: 621 IKLIYNAGNSQREKIMTLIQNIWSQLG-FKVTVESYEWPVYLSKTEKGDYDVYVVGWVPD 679
+ + S+ K I+ G F VT++S W Y++ +KG+Y V+ GW PD
Sbjct: 370 LWYTTDRYGSETAKEFEEIKRQLDASGLFDVTLKSRPWKTYVAGYQKGEYPVFGRGWSPD 429
Query: 680 YLDSDNWVGPFL 691
+ D++N++ PF+
Sbjct: 430 FPDAENFIAPFV 441
>sp|P24141|OPPA_BACSU OLIGOPEPTIDE-BINDING PROTEIN OPPA PRECURSOR
>gi|40005|emb|CAA39787.1| (X56347) OppA [Bacillus
subtilis]
Length = 545
Score = 86.6 bits (211), Expect = 9e-16
Identities = 67/255 (26%), Positives = 121/255 (47%), Gaps = 18/255 (7%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V GPF + ++ + I LE N YW+ D K++ ++ ++ ++ G D A
Sbjct: 213 VSNGPFKMTAWKHSGSITLEKNDQYWDK-DKVKLKKIDMVMINNNNTELKKFQAGELDWA 271
Query: 507 AIPTDKI--EDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPY 564
+P ++ E + + KD + + + + FNT+ +P ++V +R+AL Y++
Sbjct: 272 GMPLGQLPTESLPTLKKDGSLHVEP----IAGVYWYKFNTEAKPLDNVNIRKALTYSLDR 327
Query: 565 DQIAKVVYNNLLEPNWGPIPKPWPGYTEY--GIIKYNYNIAKAKQMLQ----EAGIDPSK 618
I K V P +P G+ + G K N ++ AK+ L+ E G+ +
Sbjct: 328 QSIVKNVTQGEQMPAMAAVPPTMKGFEDNKEGYFKDN-DVKTAKEYLEKGLKEMGLSKAS 386
Query: 619 Y--SIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVG 675
IKL YN ++ KI +Q +W + LG V +++ EW VY+ K DY + +G
Sbjct: 387 DLPKIKLSYNTDDAHA-KIAQAVQEMWKKNLGVDVELDNSEWNVYIDKLHSQDYQIGRMG 445
Query: 676 WVPDYLDSDNWVGPF 690
W+ D+ D N++ F
Sbjct: 446 WLGDFNDPINFLELF 460
>pir||A38447 oligopeptide ABC transport system substrate-binding protein oppA
precursor - Bacillus subtilis >gi|143603|gb|AAA62687.1|
(M57689) sporulation protein [Bacillus subtilis]
>gi|2633497|emb|CAB13000.1| (Z99110) oligopeptide ABC
transporter (binding protein) [Bacillus subtilis]
Length = 545
Score = 86.2 bits (210), Expect = 1e-15
Identities = 67/255 (26%), Positives = 121/255 (47%), Gaps = 18/255 (7%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V GPF + ++ + I LE N YW+ D K++ ++ ++ ++ G D A
Sbjct: 213 VSNGPFKMTAWKHSGSITLEKNDQYWDK-DKVKLKKIDMVMINNNNTELKKFQAGELDWA 271
Query: 507 AIPTDKI--EDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPY 564
+P ++ E + + KD + + + + FNT+ +P ++V +R+AL Y++
Sbjct: 272 GMPLGQLPTESLPTLKKDGSLHVEP----IAGVYWYKFNTEAKPLDNVNIRKALTYSLDR 327
Query: 565 DQIAKVVYNNLLEPNWGPIPKPWPGYTEY--GIIKYNYNIAKAKQMLQ----EAGIDPSK 618
I K V P +P G+ + G K N ++ AK+ L+ E G+ +
Sbjct: 328 QSIVKNVTQGEQIPAMAAVPPTMKGFEDNKEGYFKDN-DVKTAKEYLEKGLKEMGLSKAS 386
Query: 619 Y--SIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVG 675
IKL YN ++ KI +Q +W + LG V +++ EW VY+ K DY + +G
Sbjct: 387 DLPKIKLSYNTDDAHA-KIAQAVQEMWKKNLGVDVELDNSEWNVYIDKLHSQDYQIGRMG 445
Query: 676 WVPDYLDSDNWVGPF 690
W+ D+ D N++ F
Sbjct: 446 WLGDFNDPINFLELF 460
>dbj|BAB04735.1| (AP001510) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 536
Score = 86.2 bits (210), Expect = 1e-15
Identities = 63/247 (25%), Positives = 116/247 (46%), Gaps = 13/247 (5%)
Query: 430 VQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGH-KRVIYIIN 488
V+ G T+ ++++P GTG F +++ S +VL YW P H + +
Sbjct: 198 VESGEQPGTY--INEHPYGTGAFTFENWNPGSEVVLSRFDDYWG---EPAHVDTATFRVI 252
Query: 489 SDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEP 548
+ + R+ L TG + P + + D + + +T++ FN QKEP
Sbjct: 253 PEDLTRLAELETGGVHIID-PVQASDRARVENTDGMNLYQRN---AASITYMGFNVQKEP 308
Query: 549 FNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQM 608
+D VRQA+A A+ D + + V + EP GPI + G++ + ++ +A+++
Sbjct: 309 LDDELVRQAIALALDKDAMLQGVLDGTGEPAVGPINETNFGFSS-EVAGVEQDVERAREL 367
Query: 609 LQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGD 668
L EAG + + I+ N +R I + Q + +G +E EW YL T G+
Sbjct: 368 LAEAGYEEGFST--TIWTNDNRERMDIAEIAQANLADVGIDANIEVVEWGAYLELTGSGN 425
Query: 669 YDVYVVG 675
+D++++G
Sbjct: 426 HDLFILG 432
>pir||G69618 dipeptide ABC transporter (dipeptide-binding protein) - Bacillus
subtilis >gi|2632017|emb|CAA05576.1| (AJ002571) DppE
[Bacillus subtilis] >gi|2633650|emb|CAB13153.1| (Z99110)
dipeptide ABC transporter (dipeptide-binding protein)
[Bacillus subtilis]
Length = 549
Score = 85.8 bits (209), Expect = 1e-15
Identities = 105/482 (21%), Positives = 187/482 (38%), Gaps = 85/482 (17%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGG 283
P SFDP + W+ + I + L K++ E P +A W+ +K+ + F IR
Sbjct: 60 PTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEPE--PAMAEKWSVSKDNKTYTFTIREN 117
Query: 284 VKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKS 343
K W + P+ A D + + R+ + + + +++
Sbjct: 118 AK----WTNGD-PVTAGDFEYAWKRM----------------LDPKKGASSAFLGYFIEG 156
Query: 344 HPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPME 403
GK +VK + ++ L P L+VV++P
Sbjct: 157 GEAYNSGKGKKDDVK----------VTAKDDRTLEVTLEAPQKYFLSVVSNP-------- 198
Query: 404 YLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYI 463
+ + N KD + A T VG GPF + +++ + I
Sbjct: 199 -------------AYFPVNEKVDKDNPKWFAESDTF-------VGNGPFKLTEWKHDDSI 238
Query: 464 VLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDN 523
+E + YW+ D +V + + SD Q+ +G D A +P + + + + +DN
Sbjct: 239 TMEKSDTYWDK-DTVKLDKVKWAMVSDRNTDYQMFQSGELDTAYVPAELSDQL--LDQDN 295
Query: 524 YEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPI 583
I+ + L F FN EPF + +R+A A A+ ++I K V N + +
Sbjct: 296 VNIVDQAG-----LYFYRFNVNMEPFQNENIRKAFAMAVDQEEIVKYVTKNNEKTAHAFV 350
Query: 584 PKPWPGYT--------EYGIIKYNYNIAKAKQMLQEAGIDPSKY----SIKLIYNAGNSQ 631
PG+T E G N +KAKQ+L E G+ Y +I L Y+
Sbjct: 351 S---PGFTQPDGKDFREAGGDLIKPNESKAKQLL-EKGMKEENYNKLPAITLTYSTKPEH 406
Query: 632 REKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFL 691
++ + Q + + LG V + + EW V+L + + ++PDY D +++ F
Sbjct: 407 KKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKALKFQFSQSSFLPDYADPISFLEAFQ 466
Query: 692 YG 693
G
Sbjct: 467 TG 468
>sp|P26906|DPPE_BACSU DIPEPTIDE-BINDING PROTEIN DPPE PRECURSOR
Length = 543
Score = 85.8 bits (209), Expect = 1e-15
Identities = 105/482 (21%), Positives = 187/482 (38%), Gaps = 85/482 (17%)
Query: 224 PESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIRGG 283
P SFDP + W+ + I + L K++ E P +A W+ +K+ + F IR
Sbjct: 54 PTSFDPPIGFNNVSWQPLNNIMEGLTRLGKDHEPE--PAMAEKWSVSKDNKTYTFTIREN 111
Query: 284 VKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKS 343
K W + P+ A D + + R+ + + + +++
Sbjct: 112 AK----WTNGD-PVTAGDFEYAWKRM----------------LDPKKGASSAFLGYFIEG 150
Query: 344 HPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPME 403
GK +VK + ++ L P L+VV++P
Sbjct: 151 GEAYNSGKGKKDDVK----------VTAKDDRTLEVTLEAPQKYFLSVVSNP-------- 192
Query: 404 YLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYI 463
+ + N KD + A T VG GPF + +++ + I
Sbjct: 193 -------------AYFPVNEKVDKDNPKWFAESDTF-------VGNGPFKLTEWKHDDSI 232
Query: 464 VLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDN 523
+E + YW+ D +V + + SD Q+ +G D A +P + + + + +DN
Sbjct: 233 TMEKSDTYWDK-DTVKLDKVKWAMVSDRNTDYQMFQSGELDTAYVPAELSDQL--LDQDN 289
Query: 524 YEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPI 583
I+ + L F FN EPF + +R+A A A+ ++I K V N + +
Sbjct: 290 VNIVDQAG-----LYFYRFNVNMEPFQNENIRKAFAMAVDQEEIVKYVTKNNEKTAHAFV 344
Query: 584 PKPWPGYT--------EYGIIKYNYNIAKAKQMLQEAGIDPSKY----SIKLIYNAGNSQ 631
PG+T E G N +KAKQ+L E G+ Y +I L Y+
Sbjct: 345 S---PGFTQPDGKDFREAGGDLIKPNESKAKQLL-EKGMKEENYNKLPAITLTYSTKPEH 400
Query: 632 REKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFL 691
++ + Q + + LG V + + EW V+L + + ++PDY D +++ F
Sbjct: 401 KKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQKALKFQFSQSSFLPDYADPISFLEAFQ 460
Query: 692 YG 693
G
Sbjct: 461 TG 462
>pir||G70140 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppA-1) homolog - Lyme disease spirochete
>gi|2688228|gb|AAC66708.1| (AE001139) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppA-1) [Borrelia burgdorferi]
Length = 529
Score = 85.4 bits (208), Expect = 2e-15
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 10/236 (4%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V +G + +K+ N IV+E N Y+NA N VI+ +VA + +
Sbjct: 207 VVSGAYKLKERSINDKIVIEKNEKYYNAK-NVEIDEVIFYPTEGSVAYNMYINGELDFLQ 265
Query: 507 AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQ 566
+ +E++K +D+Y +K + +I FNT +P +++KVRQA++ AI +
Sbjct: 266 GAEKNNLEEIK--IRDDYYSGLKNG-----MAYIAFNTTIKPLDNLKVRQAISLAIDRET 318
Query: 567 IAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYN 626
+ KVV +P PK + Y+ YG ++ AK++L EAG K L Y
Sbjct: 319 LTKVVLKGSSDPTRNLTPK-FDDYS-YGKNLILFDPENAKKLLAEAGYPDGKGFPTLKYK 376
Query: 627 AGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLD 682
+ L + L + +E+ EW +L G+Y + VGW+ DY D
Sbjct: 377 ISEGRPTTAEFLQEQFKKILNINLEIENEEWTTFLGSRRTGNYQMSSVGWIGDYFD 432
>sp|P23843|OPPA_ECOLI PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN PRECURSOR
>gi|7428797|pir||F64871 oligopeptide-binding protein
precursor - Escherichia coli >gi|304925|gb|AAB00918.1|
(M60918) periplasmic oligopeptide binding protein
[Escherichia coli] >gi|1787495|gb|AAC74325.1| (AE000222)
oligopeptide transport; periplasmic binding protein
[Escherichia coli K12] >gi|1805524|dbj|BAA16038.1|
(D90852) Periplasmic oligopeptide-binding protein
precursor. [Escherichia coli]
Length = 543
Score = 85.0 bits (207), Expect = 3e-15
Identities = 108/446 (24%), Positives = 177/446 (39%), Gaps = 85/446 (19%)
Query: 260 SPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWM 319
+P +A +W NK+ W F +R K W D T P+ A D ++ SW
Sbjct: 83 APGVAESW-DNKDAKVWTFHLRKDAK----WSDGT-PVTAQDFVY------------SWQ 124
Query: 320 VKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKL 379
N ++ A YL+ + E+ ++ + G K ++
Sbjct: 125 RSVDPNTASPYA-------SYLQYGHIAG-----IDEILEGKKPITDLGVKAIDDHTLEV 172
Query: 380 VLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATH 439
L P ++ P S VP + +K+ E + Q G N T+
Sbjct: 173 TLSEPVPYFYKLLVHPSTSPVPKAAI--EKFGEK---------------WTQPG-NIVTN 214
Query: 440 QLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLT 499
G + +KD+ N IVLE +P YWN ++ V Y+ + V V
Sbjct: 215 ----------GAYTLKDWVVNERIVLERSPTYWNNAKTVINQ-VTYLPIASEVTDVNRYR 263
Query: 500 TGTADVA--AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQA 557
+G D+ ++P + + +K D V D L + + N QK PFNDV+VR A
Sbjct: 264 SGEIDMTNNSMPIELFQKLKKEIPDE----VHVDPYLCTYYYEI-NNQKPPFNDVRVRTA 318
Query: 558 LAYAIPYDQIAKVVYNNLLEPNWGPIPK----------PWPGYTEYGIIKYNYNIAKAKQ 607
L + D I V P +G P W G+++ K N +AK+
Sbjct: 319 LKLGMDRDIIVNKVKAQGNMPAYGYTPPYTDGAKLTQPEWFGWSQE---KRN---EEAKK 372
Query: 608 MLQEAGIDPSK-YSIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTE 665
+L EAG K +I L+YN + + K+ ++W + +G V + + EW +L
Sbjct: 373 LLAEAGYTADKPLTINLLYNTSDLHK-KLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRH 431
Query: 666 KGDYDVYVVGWVPDYLDSDNWVGPFL 691
+G +DV GW DY + +++ L
Sbjct: 432 QGTFDVARAGWCADYNEPTSFLNTML 457
>gb|AAC34990.1| (AF043071) oligopeptide permease periplasmic binding protein
[Borrelia burgdorferi]
Length = 523
Score = 84.7 bits (206), Expect = 3e-15
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 10/236 (4%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V +G + +K+ N IV+E N Y+NA N VI+ +VA + +
Sbjct: 201 VVSGAYKLKERSINDKIVIEKNEKYYNAK-NVEIDEVIFYPTEGSVAYNMYINGELDFLQ 259
Query: 507 AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQ 566
+ +E++K +D+Y +K + +I FNT +P +++KVRQA++ AI +
Sbjct: 260 GAEKNNLEEIK--IRDDYYSGLKNG-----MAYIAFNTTIKPLDNLKVRQAISLAIDRET 312
Query: 567 IAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYN 626
+ KVV +P PK + Y+ YG ++ AK++L EAG K L Y
Sbjct: 313 LTKVVLKGSSDPTRNLTPK-FDDYS-YGKNLILFDPENAKKLLAEAGYPDGKGFPTLKYK 370
Query: 627 AGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLD 682
+ L + L + +E+ EW +L G+Y + VGW+ DY D
Sbjct: 371 ISEGRPITAEFLQEQFKKILNINLEIENEEWTTFLGSRRTGNYQMSSVGWIGDYFD 426
>dbj|BAA14775.1| (D90763) Periplasmic oligopeptide-binding protein precursor.
[Escherichia coli]
Length = 377
Score = 84.3 bits (205), Expect = 4e-15
Identities = 73/259 (28%), Positives = 117/259 (44%), Gaps = 27/259 (10%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V G + +KD+ N IVLE +P YWN ++ V Y+ + V V +G D+
Sbjct: 46 VTNGAYTLKDWVVNERIVLERSPTYWNNAKTVINQ-VTYLPIASEVTDVNRYRSGEIDMT 104
Query: 507 --AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPY 564
++P + + +K D V D L + + N QK PFNDV+VR AL +
Sbjct: 105 NNSMPIELFQKLKKEIPDE----VHVDPYLCTYYYEI-NNQKPPFNDVRVRTALKLGMDR 159
Query: 565 DQIAKVVYNNLLEPNWGPIPK----------PWPGYTEYGIIKYNYNIAKAKQMLQEAGI 614
D I V P +G P W G+++ K N +AK++L EAG
Sbjct: 160 DIIVNKVKAQGNMPAYGYTPPYTDGAKLTQPEWFGWSQE---KRN---EEAKKLLAEAGY 213
Query: 615 DPSK-YSIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVY 672
K +I L+YN + + K+ ++W + +G V + + EW +L +G +DV
Sbjct: 214 TADKPLTINLLYNTSDLHK-KLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVA 272
Query: 673 VVGWVPDYLDSDNWVGPFL 691
GW DY + +++ L
Sbjct: 273 RAGWCADYNEPTSFLNTML 291
>gb|AAC46282.1| (AF000366) oligopeptide permease homolog AI [Borrelia burgdorferi]
Length = 523
Score = 84.3 bits (205), Expect = 4e-15
Identities = 70/262 (26%), Positives = 119/262 (44%), Gaps = 21/262 (8%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V +G + +K+ N IV+E N Y+NA N VI+ +VA + +
Sbjct: 201 VVSGAYKLKERSINDKIVIEKNEKYYNAK-NVEIDEVIFYPTEGSVAYNMYINGELDFLQ 259
Query: 507 AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQ 566
+ +E++K +D+Y +K + +I FNT +P +++KVRQA++ AI +
Sbjct: 260 GAEKNNLEEIK--IRDDYYSGLKNG-----MAYIAFNTTIKPLDNLKVRQAISLAIDRET 312
Query: 567 IAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYN 626
+ KVV +P PK + Y+ YG ++ AK++L EAG K L Y
Sbjct: 313 LTKVVLKGSSDPTRNLTPK-FDDYS-YGKNLILFDPENAKKLLAEAGYPDGKGFPTLKYK 370
Query: 627 AGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDY------ 680
+ L + L + +E+ EW +L G+Y + VGW+ DY
Sbjct: 371 ISEGRPTTAEFLQEQFKKILNINLEIENEEWTTFLGSRRTGNYQMSSVGWIGDYFNPLTF 430
Query: 681 LDS-----DNWVGPFLYGATEF 697
LDS ++++G + Y E+
Sbjct: 431 LDSLFTTENHFLGAYKYSNKEY 452
>gb|AAB97671.1| (AF005657) plasminogen binding protein [Borrelia burgdorferi]
Length = 523
Score = 83.9 bits (204), Expect = 6e-15
Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 10/236 (4%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V +G + +K+ N IV+E N Y+NA N VI+ +VA + +
Sbjct: 201 VVSGAYKLKERSINDKIVIEKNEKYYNAK-NVEIDEVIFYPTEGSVAYNMYINGELDFLQ 259
Query: 507 AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQ 566
+ +E++K +D+Y +K + +I FNT +P +++KVRQA++ AI +
Sbjct: 260 GAEKNNLEEIK--IRDDYYSGLKNG-----MAYIAFNTTIKPLDNLKVRQAISLAIDRET 312
Query: 567 IAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYN 626
+ KVV +P PK + Y+ YG ++ AK++L EAG K L +
Sbjct: 313 LTKVVLKGSSDPTRNLTPK-FDDYS-YGKNLILFDPENAKKLLAEAGYPDGKGFPTLKFK 370
Query: 627 AGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLD 682
+ L + L + +E+ EW +L G+Y + VGW+ DY D
Sbjct: 371 ISEGRPTTAEFLQEQFKKILNINLEIENEEWTTFLGSRRTGNYQMSSVGWIGDYFD 426
>dbj|BAB04286.1| (AP001509) nickel transport system (nickel-binding protein)
[Bacillus halodurans]
Length = 539
Score = 83.9 bits (204), Expect = 6e-15
Identities = 113/485 (23%), Positives = 192/485 (39%), Gaps = 104/485 (21%)
Query: 207 GDYNNDPE--TYVIATFGWPESFDPAWTYETFGWEIWHE--IGDTLVTYWKENTKEVSPD 262
G +N+ E T TF WP P + +++ + I + LV+Y + E+ P
Sbjct: 30 GTVSNEGEENTEKSITFSWPRDIGPMNPHVYNPSQLFAQSMIYEPLVSYTEGG--ELQPH 87
Query: 263 LAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKT 322
LA +W +++G E+ F +R GV+ + D T P +A
Sbjct: 88 LADSWTISEDGKEYTFKLREGVQ----FSDGT-PFNAE---------------------- 120
Query: 323 FMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLP 382
+ ++ F+ +++ H + + G V E++D F FK+VL
Sbjct: 121 ---------IVKKNFDTWIE-HSSLHSWLG-VMNVLEKTEVVDEF--------TFKMVLK 161
Query: 383 HPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLM 442
PY L +A VV LG+ PD D
Sbjct: 162 EPYYPALQDLA-----VVRPVRFLGE-----------AGFPD-----------DGDTSQG 194
Query: 443 HKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGT 502
K P+GTGP+ + DY+++ Y V NP YW ++P +V I DA RV +G
Sbjct: 195 IKEPIGTGPWMLSDYKQDEYAVFTRNPNYWG--ESPKIDKVTVKIIPDAETRVLAFESGE 252
Query: 503 ADV----AAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLT-FIVFNTQKEPFNDVKVRQA 557
D+ I D +K + TD+ PV T ++ NT E D++VR A
Sbjct: 253 LDLIFGEGVISMDAFNQLKESGQ------YGTDLSEPVGTRSLLLNTSNEKLADLRVRLA 306
Query: 558 LAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGID-- 615
L + + + V L E + +P YT+ + Y++ +A L EAG +
Sbjct: 307 LHHGFNKQAMVEGVTLGLEEKADNILSTNFP-YTDIDVEPIEYDVEQANAYLDEAGWELP 365
Query: 616 ---------PSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEK 666
+ ++LIY+ + ++ + +Q W+ +G K+ + E + +
Sbjct: 366 AGKTVREKNGEQLELELIYDKTDPLQKAMAETMQAEWAAIGVKLDITGLELTTQIQRRRA 425
Query: 667 GDYDV 671
GD+DV
Sbjct: 426 GDFDV 430
>emb|CAB59508.1| (AL132648) putative lipoprotein oligopeptide binding protein
[Streptomyces coelicolor A3(2)]
Length = 534
Score = 83.5 bits (203), Expect = 7e-15
Identities = 102/474 (21%), Positives = 184/474 (38%), Gaps = 90/474 (18%)
Query: 227 FDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYF-VIRGGVK 285
FDPA+ Y+ W I + TL+ + + + V P+ A G E Y +R G+K
Sbjct: 53 FDPAYAYDVGAWNIMRQTSQTLMVLPRGDGEPV-PEAAQQCGFTDTGNERYACTLRDGLK 111
Query: 286 AYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEEEFNEYLKSHP 345
+ P+ A DV ++ RV ++
Sbjct: 112 FANG-----DPVTAEDVKYSIERVRKINAD------------------------------ 136
Query: 346 LVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSVVPMEYL 405
TEV S+ +D KG+ +F L PF P+ +
Sbjct: 137 ---------TEVASILSTVDTVETKGDREVIFHLNTAD--------ATFPFKLSTPVAGI 179
Query: 406 LGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYI-- 463
+ NP+ DY + D G+GP+ +K + +
Sbjct: 180 V---------------NPN---DYEKDKLRDGFEL------TGSGPYTMKAEVKGDAMTK 215
Query: 464 -VLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA--AIPTDKIEDVKGVT 520
V NP Y + + +V + +DA A + G DV A+ ++I+++ T
Sbjct: 216 AVFTKNPNYKGSL-KVNNDKVELVSFADADAMGDAIDKGDIDVMTRAMTPEQIQNLSKAT 274
Query: 521 KDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNW 580
+ +++ + + ++ FNT D VR A+A I ++ VY + EP +
Sbjct: 275 DGDVDLVEVAGL---EIRYLAFNTDAATVKDKAVRAAMAQLINRSELVSAVYGSQAEPLY 331
Query: 581 GPIPKPWPGYTEYGIIKY-NYNIAKAKQMLQEAGID-PSKYSIKLIYNAGNSQREKIMTL 638
+P G++ KY + ++AKAK L++A I P K ++ + + +
Sbjct: 332 SMVPAGITGHSNSFFNKYGDPSVAKAKATLEDADITTPVKLTLDYTTDHYGAATKPEFEH 391
Query: 639 IQNIWSQLG-FKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFL 691
+Q + G F+V ++ W + +YDV+ +GW PD+ D+D+++ PFL
Sbjct: 392 LQKQLNDSGLFEVDIKGTPWEKFHKAERNREYDVFGMGWFPDFPDADSFIAPFL 445
>sp|Q46863|YGIS_ECOLI PUTATIVE BINDING PROTEIN YGIS PRECURSOR >gi|7442327|pir||B65089
hypothetical protein b3020 - Escherichia coli (strain
K-12) >gi|882550|gb|AAA69188.1| (U28377) ORF_f535
[Escherichia coli] >gi|1789397|gb|AAC76056.1| (AE000384)
putative transport periplasmic protein [Escherichia coli
K12]
Length = 535
Score = 83.1 bits (202), Expect = 1e-14
Identities = 117/498 (23%), Positives = 186/498 (36%), Gaps = 86/498 (17%)
Query: 198 NAPVVPTGVGDYNNDPETYVIATFGWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTK 257
N P+ P V YNN + P + DP E +I ++ + LV W +
Sbjct: 26 NTPLAPQQVFRYNNHSD---------PGTLDPQKVEENTAAQIVLDLFEGLV--WMDGEG 74
Query: 258 EVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVS 317
+V P A W G + F +R G++ W D P+ A D + + R
Sbjct: 75 QVQPAQAERWEILDGGKRYIFHLRSGLQ----WSDGQ-PLTAEDFVLGWQR--------- 120
Query: 318 WMVKTFMNVSASQALTEEEFNEYLKSHPL---VAEYHGKTTEVKSLQELLDFFGYKGETA 374
A T F YL + A GK +V SL G K
Sbjct: 121 ----------AVDPKTASPFAGYLAQAHINNAAAIVAGKA-DVTSL-------GVKATDD 162
Query: 375 GVFKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGA 434
++ L P ++A P L VP + K+ D+W K
Sbjct: 163 RTLEVTLEQPVPWFTTMLAWPTLFPVPHHVI--------------AKHGDSWS----KPE 204
Query: 435 NDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVAR 494
N V G F + + N I NP Y +A + ++V Y+ ++V
Sbjct: 205 N----------MVYNGAFVLDQWVVNEKITARKNPKYRDA-QHTVLQQVEYLALDNSVTG 253
Query: 495 VQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKV 554
G D+ +P +I ++ II + + + FN +K PFNDV+V
Sbjct: 254 YNRYRAGEVDLTWVPAQQIPAIEKSLPGELRIIPRLNS-----EYYNFNLEKPPFNDVRV 308
Query: 555 RQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGY--TEYGIIK--YNYNIAKAKQMLQ 610
R+AL + IA+ V L P P G+ T + ++ + +A AK +L+
Sbjct: 309 RRALYLTVDRQLIAQKVLG-LRTPATTLTPPEVKGFSATTFDELQKPMSERVAMAKALLK 367
Query: 611 EAGIDPSK-YSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDY 669
+AG D S +L YN + + + L LG +VT+ + EW YL GD+
Sbjct: 368 QAGYDASHPLRFELFYNKYDLHEKTAIALSSEWKKWLGAQVTLRTMEWKTYLDARRAGDF 427
Query: 670 DVYVVGWVPDYLDSDNWV 687
+ W Y D+ +++
Sbjct: 428 MLSRQSWDATYNDASSFL 445
>pir||A70141 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppA-3) homolog - Lyme disease spirochete
>gi|2688226|gb|AAC66706.1| (AE001139) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppA-3) [Borrelia burgdorferi]
Length = 541
Score = 82.3 bits (200), Expect = 2e-14
Identities = 113/468 (24%), Positives = 187/468 (39%), Gaps = 79/468 (16%)
Query: 222 GWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIR 281
G P S DP ET G I +I L+T T ++ P LA W +K+ + F +R
Sbjct: 45 GAPSSLDPHLVDETIGARILEQIFSGLLTL-NTKTGKLKPGLAKNWEASKDKKTYQFYLR 103
Query: 282 GGVKAYDPWHDKTYPIDATDVLFTFWRVAR--LGHSVSWMVKTFMNVSASQALTEEEFNE 339
+ W D I A + +F R+ G + M+K+ + + E
Sbjct: 104 DNLF----WSDGV-EITAEGIRKSFLRILNKETGSTNVDMLKSII----------KNGQE 148
Query: 340 YLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSV 399
Y +E K + K+L+ L P PY L ++
Sbjct: 149 YFDGKVSDSELGIKAIDSKTLE---------------ITLTAPKPY--FLELLLHYAFMP 191
Query: 400 VPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQE 459
VP+ + +KY+ N + + M V +GPF +K
Sbjct: 192 VPIHVI--EKYK----------------------GNWTSPENM----VTSGPFKLKKRLP 223
Query: 460 NSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA--AIPTDKIEDVK 517
N I+ E N Y+NA + + ++YI + + + + D +IP D + ++K
Sbjct: 224 NEKIIFEKNERYYNAKEVELDE-LVYITSDNDLTVYNMYKNNEIDAIFNSIPPDIVNEIK 282
Query: 518 GVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLE 577
+ KD Y+ L FNT+ +P +D +VR+AL AI + + V N+
Sbjct: 283 -LQKDYYQHKSNAIYLYS------FNTKIKPLDDARVREALTLAIDRETLTYKVLNDGTV 335
Query: 578 PNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSK--YSIKLIYNAGNSQREKI 635
P I Y YG ++ K+K++L +AG K + L YN N +KI
Sbjct: 336 PT-REITPDLKNY-NYGKKLALFDPEKSKKLLADAGYPNGKGFPMLTLKYNT-NETHKKI 392
Query: 636 MTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLD 682
IQN W + L + + + WPV + G++++ VG + +YLD
Sbjct: 393 AAFIQNQWKKILNINLMLTNENWPVLTNSRNTGNFEIIRVGRIGEYLD 440
>gb|AAC34992.1| (AF043071) oligopeptide permease periplasmic binding protein
[Borrelia burgdorferi]
Length = 541
Score = 82.3 bits (200), Expect = 2e-14
Identities = 113/468 (24%), Positives = 187/468 (39%), Gaps = 79/468 (16%)
Query: 222 GWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIR 281
G P S DP ET G I +I L+T T ++ P LA W +K+ + F +R
Sbjct: 45 GAPSSLDPHLVDETIGARILEQIFSGLLTL-NTKTGKLKPGLAKNWEASKDKKTYQFYLR 103
Query: 282 GGVKAYDPWHDKTYPIDATDVLFTFWRVAR--LGHSVSWMVKTFMNVSASQALTEEEFNE 339
+ W D I A + +F R+ G + M+K+ + + E
Sbjct: 104 DNLF----WSDGV-EITAEGIRKSFLRILNKETGSTNVDMLKSII----------KNGQE 148
Query: 340 YLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSV 399
Y +E K + K+L+ L P PY L ++
Sbjct: 149 YFDGKVSDSELGIKAIDSKTLE---------------ITLTAPKPY--FLELLLHYAFMP 191
Query: 400 VPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQE 459
VP+ + +KY+ N + + M V +GPF +K
Sbjct: 192 VPVHVI--EKYK----------------------GNWTSPENM----VTSGPFKLKKRLP 223
Query: 460 NSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA--AIPTDKIEDVK 517
N I+ E N Y+NA + + ++YI + + + + D +IP D + ++K
Sbjct: 224 NEKIIFEKNERYYNAKEVELDE-LVYITSDNDLTVYNMYKNNEIDAIFNSIPPDIVNEIK 282
Query: 518 GVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLE 577
+ KD Y+ L FNT+ +P +D +VR+AL AI + + V N+
Sbjct: 283 -LQKDYYQHKSNAIYLYS------FNTKIKPLDDARVREALTLAIDRETLTYKVLNDGTV 335
Query: 578 PNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSK--YSIKLIYNAGNSQREKI 635
P I Y YG ++ K+K++L +AG K + L YN N +KI
Sbjct: 336 PT-REITPDLENY-NYGKKLALFDPEKSKKLLADAGYPNGKGFPMLTLKYNT-NETHKKI 392
Query: 636 MTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLD 682
IQN W + L + + + WPV + G++++ VG + +YLD
Sbjct: 393 AAFIQNQWKKILNINLMLTNENWPVLTNSRNTGNFEIIRVGRIGEYLD 440
>sp|P75797|YLIB_ECOLI PUTATIVE BINDING PROTEIN YLIB PRECURSOR >gi|7442326|pir||F64820
probable oligopeptide-binding periplasmic protein
precursor - Escherichia coli >gi|1787052|gb|AAC73917.1|
(AE000185) putative transport protein [Escherichia coli
K12]
Length = 512
Score = 82.3 bits (200), Expect = 2e-14
Identities = 78/327 (23%), Positives = 140/327 (41%), Gaps = 63/327 (19%)
Query: 378 KLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
K+ L P++A +N++A P +++ L YGK
Sbjct: 144 KITLKQPFSAFINILAHPATAMISPAAL-----------EKYGKE--------------- 177
Query: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQL 497
+ YPVGTGP+ + + + ++ ++ YW P + + +D R +
Sbjct: 178 ----IGFYPVGTGPYELDTWNQTDFVKVKKFAGYWQP-GLPKLDSITWRPVADNNTRAAM 232
Query: 498 LTTGTADVA-AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQ 556
L TG A A IP ++ ++ N E++ I+ +I N ++PF++ KVR+
Sbjct: 233 LQTGEAQFAFPIPYEQATLLE--KNKNIELMASPSIMQ---RYISMNVTQKPFDNPKVRE 287
Query: 557 ALAYAIPYDQIAKVVYNNLLEPNWGPIP---------KPWPGYTEYGIIKYNYNIAKAKQ 607
AL YAI + KV + P G +P KPWP Y+ KA++
Sbjct: 288 ALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWP-----------YDPVKARE 336
Query: 608 MLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTE-K 666
+L+EAG P+ +S L + +S +K++ Q +Q+G K V + + ++ E K
Sbjct: 337 LLKEAGY-PNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGK 395
Query: 667 GDYD----VYVVGWVPDYLDSDNWVGP 689
G + ++ GW ++D + P
Sbjct: 396 GQKESGVRMFYTGWSASTGEADWALSP 422
>dbj|BAA35525.1| (D90721) Heme-binding protein a precursor (hemin-binding
lipoprotein). [Escherichia coli]
Length = 598
Score = 82.3 bits (200), Expect = 2e-14
Identities = 78/327 (23%), Positives = 140/327 (41%), Gaps = 63/327 (19%)
Query: 378 KLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDA 437
K+ L P++A +N++A P +++ L YGK
Sbjct: 230 KITLKQPFSAFINILAHPATAMISPAAL-----------EKYGKE--------------- 263
Query: 438 THQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQL 497
+ YPVGTGP+ + + + ++ ++ YW P + + +D R +
Sbjct: 264 ----IGFYPVGTGPYELDTWNQTDFVKVKKFAGYWQP-GLPKLDSITWRPVADNNTRAAM 318
Query: 498 LTTGTADVA-AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQ 556
L TG A A IP ++ ++ N E++ I+ +I N ++PF++ KVR+
Sbjct: 319 LQTGEAQFAFPIPYEQATLLE--KNKNIELMASPSIMQ---RYISMNVTQKPFDNPKVRE 373
Query: 557 ALAYAIPYDQIAKVVYNNLLEPNWGPIP---------KPWPGYTEYGIIKYNYNIAKAKQ 607
AL YAI + KV + P G +P KPWP Y+ KA++
Sbjct: 374 ALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWP-----------YDPVKARE 422
Query: 608 MLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTE-K 666
+L+EAG P+ +S L + +S +K++ Q +Q+G K V + + ++ E K
Sbjct: 423 LLKEAGY-PNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGK 481
Query: 667 GDYD----VYVVGWVPDYLDSDNWVGP 689
G + ++ GW ++D + P
Sbjct: 482 GQKESGVRMFYTGWSASTGEADWALSP 508
>gb|AAC46284.1| (AF000366) oligopeptide permease homolog AIII [Borrelia
burgdorferi]
Length = 541
Score = 81.5 bits (198), Expect = 3e-14
Identities = 113/468 (24%), Positives = 186/468 (39%), Gaps = 79/468 (16%)
Query: 222 GWPESFDPAWTYETFGWEIWHEIGDTLVTYWKENTKEVSPDLAVAWAHNKEGTEWYFVIR 281
G P S DP ET G I +I L+T T ++ P LA W +K+ + F +R
Sbjct: 45 GAPSSLDPHLVDETIGARILEQIFSGLLTL-NTKTGKLKPGLAKNWEASKDKKTYQFYLR 103
Query: 282 GGVKAYDPWHDKTYPIDATDVLFTFWRVAR--LGHSVSWMVKTFMNVSASQALTEEEFNE 339
+ W D I A + +F R+ G + M+K+ + + E
Sbjct: 104 DNLF----WSDGV-EITAEGIRKSFLRILNKETGSTNVDMLKSII----------KNGQE 148
Query: 340 YLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPFLSV 399
Y +E K + K+L+ L P PY L ++
Sbjct: 149 YFDGKVSDSELGIKAIDSKTLE---------------ITLTAPKPY--FLELLLHYAFMP 191
Query: 400 VPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKDYQE 459
VP+ + +KY+ N + + M V GPF +K
Sbjct: 192 VPIHVI--EKYK----------------------GNWTSPENM----VTCGPFKLKKRLP 223
Query: 460 NSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA--AIPTDKIEDVK 517
N I+ E N Y+NA + + ++YI + + + + D +IP D + ++K
Sbjct: 224 NEKIIFEKNERYYNAKEVELDE-LVYITSDNDLTVYNMYKNNEIDAIFNSIPPDIVNEIK 282
Query: 518 GVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNLLE 577
+ KD Y+ L FNT+ +P +D +VR+AL AI + + V N+
Sbjct: 283 -LQKDYYQHKSNAIYLYS------FNTKIKPLDDARVREALTLAIDRETLTYKVLNDGTV 335
Query: 578 PNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSK--YSIKLIYNAGNSQREKI 635
P I Y YG ++ K+K++L +AG K + L YN N +KI
Sbjct: 336 PT-REITPDLKNY-NYGKKLALFDPEKSKKLLADAGYPNGKGFPMLTLKYNT-NETHKKI 392
Query: 636 MTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLD 682
IQN W + L + + + WPV + G++++ VG + +YLD
Sbjct: 393 AAFIQNQWKKILNINLMLTNENWPVLTNSRNTGNFEIIRVGRIGEYLD 440
>pir||D72107 oligopeptide binding protein - Chlamydophila pneumoniae (strain
CWL029) >gi|4376469|gb|AAD18351.1| (AE001606)
Oligopeptide Binding Protein [Chlamydophila pneumoniae
CWL029] >gi|8978571|dbj|BAA98408.1| (AP002545)
oligopeptide binding protein [Chlamydophila pneumoniae
J138]
Length = 526
Score = 81.1 bits (197), Expect = 4e-14
Identities = 74/354 (20%), Positives = 149/354 (41%), Gaps = 48/354 (13%)
Query: 337 FNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPF 396
F E+ S + ++ + + Q+ L+ G + + + L P+ L ++A P
Sbjct: 123 FEEFSPSIHTLLGVIKNSSAIHNAQKSLETLGIQAKDDLTLVITLEQPFPYFLTLIARPV 182
Query: 397 LSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKD 456
S P+ + L + Y++ S Y + GPF +K
Sbjct: 183 FS--PVHHTLRESYKKGTPPSTY---------------------------ISNGPFVLKK 213
Query: 457 YQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDV 516
++ +Y++LE NP+Y++ ++ RV I DA +L + + D P
Sbjct: 214 HEHQNYLILEKNPHYYDH-ESVKLDRVTLKIIPDASTATKLFKSKSIDWIGSPWSA---- 268
Query: 517 KGVTKDNYEIIVKTDIL---LPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYN 573
++ ++ +++ + IL + T +++N QK + +R+A+A+AI I ++V +
Sbjct: 269 -PISNEDQKVLSQEKILTYSVSSTTLLIYNLQKPLIQNKALRKAIAHAIDRKSILRLVPS 327
Query: 574 N-----LLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAG 628
L+ PN + TE K +AK+ L E + + ++Y
Sbjct: 328 GQEAVTLVPPNLSQLNLQKEISTEERQTKARAYFQEAKETLSEKELA----ELSILYPID 383
Query: 629 NSQREKIMTLIQN-IWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYL 681
+S I IQ + LG K+ ++ E+ +L K +GD+ + GW+ +Y+
Sbjct: 384 SSNSSIIAQEIQRQLKDTLGLKIKIQGMEYHCFLKKRRQGDFFIATGGWIAEYV 437
>pir||A81564 peptide ABC transporter, periplasmic peptide-binding protein CP0569
[imported] - Chlamydophila pneumoniae (strain AR39)
>gi|7189481|gb|AAF38388.1| (AE002215) peptide ABC
transporter, periplasmic peptide-binding protein
[Chlamydophila pneumoniae AR39]
Length = 528
Score = 81.1 bits (197), Expect = 4e-14
Identities = 74/354 (20%), Positives = 149/354 (41%), Gaps = 48/354 (13%)
Query: 337 FNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADPF 396
F E+ S + ++ + + Q+ L+ G + + + L P+ L ++A P
Sbjct: 125 FEEFSPSIHTLLGVIKNSSAIHNAQKSLETLGIQAKDDLTLVITLEQPFPYFLTLIARPV 184
Query: 397 LSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVKD 456
S P+ + L + Y++ S Y + GPF +K
Sbjct: 185 FS--PVHHTLRESYKKGTPPSTY---------------------------ISNGPFVLKK 215
Query: 457 YQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIEDV 516
++ +Y++LE NP+Y++ ++ RV I DA +L + + D P
Sbjct: 216 HEHQNYLILEKNPHYYDH-ESVKLDRVTLKIIPDASTATKLFKSKSIDWIGSPWSA---- 270
Query: 517 KGVTKDNYEIIVKTDIL---LPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYN 573
++ ++ +++ + IL + T +++N QK + +R+A+A+AI I ++V +
Sbjct: 271 -PISNEDQKVLSQEKILTYSVSSTTLLIYNLQKPLIQNKALRKAIAHAIDRKSILRLVPS 329
Query: 574 N-----LLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAG 628
L+ PN + TE K +AK+ L E + + ++Y
Sbjct: 330 GQEAVTLVPPNLSQLNLQKEISTEERQTKARAYFQEAKETLSEKELA----ELSILYPID 385
Query: 629 NSQREKIMTLIQN-IWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYL 681
+S I IQ + LG K+ ++ E+ +L K +GD+ + GW+ +Y+
Sbjct: 386 SSNSSIIAQEIQRQLKDTLGLKIKIQGMEYHCFLKKRRQGDFFIATGGWIAEYV 439
>pir||A36263 polyamine-induced protein precursor - Escherichia coli
>gi|147014|gb|AAA21302.1| (J05433) oligopeptide binding
protein precursor [Escherichia coli]
Length = 543
Score = 80.8 bits (196), Expect = 5e-14
Identities = 107/446 (23%), Positives = 175/446 (38%), Gaps = 85/446 (19%)
Query: 260 SPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWM 319
+P +A +W NK+ W F +R K W D T P+ A D ++ SW
Sbjct: 83 APGVAESW-DNKDAKVWTFHLRKDAK----WSDGT-PVTAQDFVY------------SWQ 124
Query: 320 VKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKL 379
N ++ A YL+ + E+ ++ + G K ++
Sbjct: 125 RSVDPNTASPYA-------SYLQYGHIAG-----IDEILEGKKPITDLGVKAIDDHTLEV 172
Query: 380 VLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATH 439
L P ++ P S VP + +K+ E + Q G N T+
Sbjct: 173 TLSEPVPYFYKLLVHPSTSPVPKAAI--EKFGEK---------------WTQPG-NIVTN 214
Query: 440 QLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLT 499
G + +KD+ N IVLE +P YWN ++ V Y+ + V V
Sbjct: 215 ----------GAYTLKDWVVNERIVLERSPTYWNNAKTVINQ-VTYLPIASEVTDVNRYR 263
Query: 500 TGTADVA--AIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQA 557
+G D+ ++P + + +K D V D L + + N QK PFNDV R A
Sbjct: 264 SGEIDMTYNSMPIELFQKLKKEIPDE----VHVDPYLCTYYYEI-NNQKPPFNDVLWRTA 318
Query: 558 LAYAIPYDQIAKVVYNNLLEPNWGPIPK----------PWPGYTEYGIIKYNYNIAKAKQ 607
L + D I V P +G P W G+++ K N +AK+
Sbjct: 319 LKLGMDRDIIVNKVKAQGNMPAYGYTPPYTDGAKLTQPEWFGWSQE---KRN---EEAKK 372
Query: 608 MLQEAGIDPSK-YSIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTE 665
+L EAG K +I L+YN + + K+ ++W + +G V + + EW +L
Sbjct: 373 LLAEAGYTADKPLTINLLYNTSDLHK-KLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRH 431
Query: 666 KGDYDVYVVGWVPDYLDSDNWVGPFL 691
+G +DV GW DY + +++ L
Sbjct: 432 QGTFDVARAGWCADYNEPTSFLNTML 457
>dbj|BAA97043.1| (AB015765) SapA [Vibrio alginolyticus]
Length = 469
Score = 80.8 bits (196), Expect = 5e-14
Identities = 73/280 (26%), Positives = 128/280 (45%), Gaps = 14/280 (5%)
Query: 428 DYVQKGANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYII 487
+Y Q+ A + + + P+GTGP+ +K+YQ N I LE + YW + ++V++ I
Sbjct: 122 EYGQQLAAKDHKEEIDQLPIGTGPYQLKEYQVNDLIRLERHSNYWKSPAK--MEQVVFDI 179
Query: 488 NSDAVARVQLLTTGTADVAAIP-TDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQK 546
+ + L DV + P + +I ++ DN E+ T ++FI NT+
Sbjct: 180 SHRGTGTLAKLLRNECDVLSSPISSQIPVIQ--ENDNLEL---TATPANNVSFIAINTET 234
Query: 547 EPFNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPI-PKPWPGYTEYGIIKYNYNIAKA 605
+D +VRQAL AI I VY + + P W + I+Y+ N A A
Sbjct: 235 TALSDARVRQALNLAINRQNILDSVYYGTGSQAYTLLPPNSWAYQKDSVKIRYDRNYALA 294
Query: 606 KQMLQEAGIDPS---KYSIKLIYNAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLS 662
+L++AG + + L A N K LIQ ++ +G ++T+ + + +
Sbjct: 295 --LLRDAGYEDGLELTMWVPLEPRAFNPSPRKTAELIQANFADIGVELTLLTDDRFERVD 352
Query: 663 KTEKGDYDVYVVGWVPDYLDSDNWVGPFLYGATEFKEINI 702
D D+ + GW+ D D DN+ P L ++ +N+
Sbjct: 353 LENINDIDLLLTGWIGDTGDPDNFFRPLLSCESDRVGLNV 392
>dbj|BAB04066.1| (AP001508) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 516
Score = 80.8 bits (196), Expect = 5e-14
Identities = 79/271 (29%), Positives = 126/271 (46%), Gaps = 25/271 (9%)
Query: 446 PVGTGPFYVKDYQENSYIVL-EYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTAD 504
PVGTGP+ K++ +S IVL Y Y+ A D V++ + + RV L TG AD
Sbjct: 192 PVGTGPYQFKEWVRDSKIVLTPYENYFEGAVDE--WDEVVFRVIPENSTRVAELLTGGAD 249
Query: 505 VAA-IPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIP 563
+A IP+ E V ++N +KT+ + I+ T+ P DV+VRQAL AI
Sbjct: 250 IAVNIPSADWERV----EENEGTSMKTETSNRTIMLILRATEGYPTADVRVRQALDLAID 305
Query: 564 YDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKL 623
I + V P + G E Y+Y++ KAKQ+L+EAG P + + L
Sbjct: 306 NKAITENVLRGGGIPTKTRVAPGNFGAEESLYNTYDYDVEKAKQLLKEAGY-PDGFEMTL 364
Query: 624 IYNAGN-SQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGD-YDVYVVG------ 675
G Q ++ +I + + +V +E EW ++ + G+ D Y++G
Sbjct: 365 HSPHGRYLQDAEVAEMIAGMLQAINVEVRLEFMEWSNFVEMRQAGENKDAYLIGLGNSMF 424
Query: 676 ---WVPDYLDSDNWVGPFLYGATEFKEINIE 703
+ D+ SD +V G T++K I+
Sbjct: 425 DGAYSVDWHRSDRFV-----GETDYKNEEID 450
>dbj|BAA75392.1| (AB013376) AppA [Bacillus halodurans]
Length = 531
Score = 79.2 bits (192), Expect = 1e-13
Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 8/251 (3%)
Query: 446 PVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADV 505
P+GTG F +D + L + YW +I D +L T G
Sbjct: 210 PIGTGYFKFEDRTPGQSVTLSRHENYWGDELAKVDTVTFQVIPEDLTRIAELETGGIHLT 269
Query: 506 AAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYD 565
+ E ++ E T ++ ++ FNT+ EPF+D KVRQA+ AI D
Sbjct: 270 YPVNPSDAERIENGPDTYLEQANSTRMV-----YLGFNTEVEPFDDPKVRQAIHMAIDKD 324
Query: 566 QIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIY 625
I V + + GPI G++E I K ++ AK +L EAG P + L+
Sbjct: 325 GILDGVVSGIGIRADGPIAPDVFGFSEQ-IDKITFDREMAKDLLAEAGY-PDGFPTTLLT 382
Query: 626 NAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDN 685
+ + +R+ + +IQ S++G V+++ +E+ YL + G+ ++++ W +D D
Sbjct: 383 D-DDRERQDLAEMIQYQLSEIGIDVSIDMFEFGTYLERAGNGESELFLGSWGTVTMDGDY 441
Query: 686 WVGPFLYGATE 696
+ P + + +
Sbjct: 442 GLYPVFHSSNK 452
>dbj|BAB06473.1| (AP001516) oligopeptide ABC transporter (oligopeptide-binding
protein) [Bacillus halodurans]
Length = 534
Score = 79.2 bits (192), Expect = 1e-13
Identities = 63/251 (25%), Positives = 112/251 (44%), Gaps = 8/251 (3%)
Query: 446 PVGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADV 505
P+GTG F +D + L + YW +I D +L T G
Sbjct: 208 PIGTGYFKFEDRTPGQSVTLSRHENYWGDELAKVDTVTFQVIPEDLTRIAELETGGIHLT 267
Query: 506 AAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYD 565
+ E ++ E T ++ ++ FNT+ EPF+D KVRQA+ AI D
Sbjct: 268 YPVNPSDAERIENGPDTYLEQANSTRMV-----YLGFNTEVEPFDDPKVRQAIHMAIDKD 322
Query: 566 QIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIY 625
I V + + GPI G++E I K ++ AK +L EAG P + L+
Sbjct: 323 GILDGVVSGIGIRADGPIAPDVFGFSEQ-IDKITFDREMAKDLLAEAGY-PDGFPTTLLT 380
Query: 626 NAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVPDYLDSDN 685
+ + +R+ + +IQ S++G V+++ +E+ YL + G+ ++++ W +D D
Sbjct: 381 D-DDRERQDLAEMIQYQLSEIGIDVSIDMFEFGTYLERAGNGESELFLGSWGTVTMDGDY 439
Query: 686 WVGPFLYGATE 696
+ P + + +
Sbjct: 440 GLYPVFHSSNK 450
>gb|AAC46281.1| (AF000365) oligopeptide permease homolog AV [Borrelia burgdorferi]
Length = 529
Score = 76.5 bits (185), Expect = 1e-12
Identities = 70/246 (28%), Positives = 111/246 (44%), Gaps = 26/246 (10%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V +GPF +K N I LE N +++A N +I++ +D + D
Sbjct: 203 VTSGPFKLKRRILNEEISLEKNEKFYDAK-NVAINELIFVTINDTRRIYSMYEHNEIDAI 261
Query: 507 A--IPTDKIEDVKGVTKDNYEIIVKTDIL---LPVLTFIVFNTQKEPFNDVKVRQALAYA 561
IP I E+I++ D + + F NT +P N+VKVR+ALA A
Sbjct: 262 FNNIPLSLIN----------ELILREDFYSADINQIGFFSLNTNVKPLNNVKVREALALA 311
Query: 562 IPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKY--NYNIAKAKQMLQEAGIDPSKY 619
+ + + V +N N+ K P Y K YN KA+++L EAG K
Sbjct: 312 VDRETLTYRVLDN----NFKATRKISPNINNYNYGKKLKPYNPRKAEKLLAEAGYPDGKN 367
Query: 620 --SIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGW 676
++ + YN + ++E + + IQ+ W + L V +E W ++S KG Y++ V W
Sbjct: 368 FPTLTIKYNKNDLEKE-VASFIQSQWKKVLNIDVEIEPETWVNHISNILKGQYEISVRSW 426
Query: 677 VPDYLD 682
DYLD
Sbjct: 427 QGDYLD 432
>gi|11496929 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein (oppAV) [Borrelia burgdorferi]
>gi|7442330|pir||B70211 oligopeptide ABC transporter,
periplasmic oligopeptide-binding protein (oppAV) homolog
- Lyme disease spirochete plasmid A/lp54
>gi|2690261|gb|AAC66262.1| (AE000790) oligopeptide ABC
transporter, periplasmic oligopeptide-binding protein
(oppAV) [Borrelia burgdorferi]
Length = 529
Score = 76.5 bits (185), Expect = 1e-12
Identities = 70/246 (28%), Positives = 111/246 (44%), Gaps = 26/246 (10%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
V +GPF +K N I LE N +++A N +I++ +D + D
Sbjct: 203 VTSGPFKLKRRILNEEISLEKNEKFYDAK-NVAINELIFVTINDTRRIYSMYEHNEIDAI 261
Query: 507 A--IPTDKIEDVKGVTKDNYEIIVKTDIL---LPVLTFIVFNTQKEPFNDVKVRQALAYA 561
IP I E+I++ D + + F NT +P N+VKVR+ALA A
Sbjct: 262 FNNIPLSLIN----------ELILREDFYSADINQIGFFSLNTNVKPLNNVKVREALALA 311
Query: 562 IPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKY--NYNIAKAKQMLQEAGIDPSKY 619
+ + + V +N N+ K P Y K YN KA+++L EAG K
Sbjct: 312 VDRETLTYRVLDN----NFKATRKISPNINNYNYGKKLKPYNPRKAEKLLAEAGYPDGKN 367
Query: 620 --SIKLIYNAGNSQREKIMTLIQNIWSQ-LGFKVTVESYEWPVYLSKTEKGDYDVYVVGW 676
++ + YN + ++E + + IQ+ W + L V +E W ++S KG Y++ V W
Sbjct: 368 FPTLTIKYNKNDLEKE-VASFIQSQWKKVLNIDVEIEPETWVNHISNILKGQYEISVRSW 426
Query: 677 VPDYLD 682
DYLD
Sbjct: 427 QGDYLD 432
>pir||A72367 oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein - Thermotoga maritima (strain MSB8)
>gi|4981044|gb|AAD35616.1|AE001728_17 (AE001728)
oligopeptide ABC transporter, periplasmic
oligopeptide-binding protein [Thermotoga maritima]
Length = 579
Score = 76.5 bits (185), Expect = 1e-12
Identities = 68/254 (26%), Positives = 109/254 (42%), Gaps = 28/254 (11%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDN----PGHKRVIYIINSDAVARVQLLTTGT 502
VG GPF +Y + Y+ NPYYW P +I+ I A+ G
Sbjct: 210 VGLGPFIPVEYVPDQYVRFVKNPYYWKYDKEGKQLPYLDGIIFKIIPTQDAQRLAFENGE 269
Query: 503 ADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVL--TFIVFN------TQKEPFNDVKV 554
DV + ++K + ++ ++ I P TFI FN +++ F +
Sbjct: 270 VDVYGPRGTEYAELKAMAREKDWVV---GIGGPNFGTTFISFNWNAPDPVKRKWFRNDFF 326
Query: 555 RQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGII-KYNYNIAKAKQMLQEAG 613
R+A+AYAI + +YN L WGPI + Y + ++ KY YN+ A+ ML+ G
Sbjct: 327 RRAVAYAIDKQSMIDTLYNGLAVEQWGPISQAATVYYDESVLRKYPYNLDLARTMLKLGG 386
Query: 614 ---------IDPSKYSIKLIY--NAGNSQREKIMTLIQNIWSQLGFKVTVESYEWPVYLS 662
+D +K I NAGN RE + +I +LG VT ++ +
Sbjct: 387 FKWDENGQLLDSEGNPVKFIIMTNAGNQIREGMGNIITEALKKLGMDVTFAPIDFNTLVQ 446
Query: 663 K-TEKGDYDVYVVG 675
K GD++ ++G
Sbjct: 447 KLVVNGDWEAVIIG 460
>gi|10954940 Probable accA [Agrobacterium tumefaciens]
>gi|6498293|dbj|BAA87745.1| (AB016260) Probable accA
[Agrobacterium tumefaciens]
Length = 521
Score = 76.1 bits (184), Expect = 1e-12
Identities = 99/447 (22%), Positives = 180/447 (40%), Gaps = 98/447 (21%)
Query: 222 GWPESFDPAWTYETFGWEIWHEIGDTLVT--YWKE----NTKEVSPDLAVAWAHNKEGTE 275
G P S +P G I ++I DTL+ ++ + N ++ P LA +W E +
Sbjct: 41 GLPNSLEPVNAISNVGPRIVNQIFDTLIARDFFAKGAPGNAIDLVPALAESWERIDEKS- 99
Query: 276 WYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEE 335
+R ++ +HD + A DV +TF W + + ++ + +
Sbjct: 100 ----VRFKLRQKVMFHDGV-ELTADDVAYTF------SSERLWGPEAIKKIPLGKSYSLD 148
Query: 336 EFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADP 395
F+E P+V + + T K+ L++ F VA
Sbjct: 149 -FDE-----PVVEDKYTVTLRTKTPSYLIETF------------------------VASW 178
Query: 396 FLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVK 455
+VP EY Y + GA D ++ PVGTGP+
Sbjct: 179 MSRIVPKEY------------------------YRKLGAVDFGNK-----PVGTGPYKFV 209
Query: 456 DYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIED 515
++ +VLE N YW P ++IY I ++ RV L +G D+ I T +D
Sbjct: 210 EFVAGDRVVLEANDAYWG--PKPTASKIIYQIVAEPATRVAGLISGEYDI--ITTLTPDD 265
Query: 516 VKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNL 575
++ + ++Y + L+ FN +E F D K+R+ALA A+ + + ++
Sbjct: 266 IQLI--NSYPDLETRGTLIENFHMFTFNMNQEVFKDKKLRRALALAVNRPIMVEALWKKQ 323
Query: 576 LE-------PNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAG 628
PN+G P E YN+ +AK++++E+G D + + + N
Sbjct: 324 ASIPAGFNFPNYGETFDPKRKAME-------YNVEEAKRLVKESGYDGTPITYHTMGNYY 376
Query: 629 NSQREKIMTLIQNIWSQLGFKVTVESY 655
+ +M +++ +W Q+G V +++Y
Sbjct: 377 ANAMPALMMMME-MWKQIGVNVVMKTY 402
>pir||A48650 agrocinopine utilization periplasmic binding protein accA precursor
- Agrobacterium tumefaciens plasmid pTiC58
>gi|3153177|gb|AAC17197.1| (AF010180) AccA
[Agrobacterium tumefaciens]
Length = 521
Score = 75.7 bits (183), Expect = 2e-12
Identities = 99/447 (22%), Positives = 179/447 (39%), Gaps = 98/447 (21%)
Query: 222 GWPESFDPAWTYETFGWEIWHEIGDTLVT--YWKE----NTKEVSPDLAVAWAHNKEGTE 275
G P S +P G I ++I DTL+ ++ + N ++ P LA +W E +
Sbjct: 41 GLPNSLEPVNAISNVGPRIVNQIFDTLIARDFFAKGAPGNAIDLVPALAESWERIDEKS- 99
Query: 276 WYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHSVSWMVKTFMNVSASQALTEE 335
+R ++ +HD + A DV +TF W + + ++ + +
Sbjct: 100 ----VRFKLRQKVMFHDGV-ELTADDVAYTF------SSERLWGPEAIKKIPLGKSYSLD 148
Query: 336 EFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAGVFKLVLPHPYAAILNVVADP 395
F+E P+V + + T K+ L++ F VA
Sbjct: 149 -FDE-----PVVEDKYTVTLRTKTPSYLIETF------------------------VASW 178
Query: 396 FLSVVPMEYLLGDKYEEALKASNYGKNPDAWKDYVQKGANDATHQLMHKYPVGTGPFYVK 455
+VP EY Y + GA D ++ PVGTGP+
Sbjct: 179 MSRIVPKEY------------------------YKKLGAVDFGNK-----PVGTGPYKFV 209
Query: 456 DYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVAAIPTDKIED 515
++ +VLE N YW P ++ Y I ++ RV L +G D+ I T +D
Sbjct: 210 EFVAGDRVVLEANDAYWG--PKPTASKITYQIVAEPATRVAGLISGEYDI--ITTLTPDD 265
Query: 516 VKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAIPYDQIAKVVYNNL 575
++ + ++Y + L+ FN +E F D K+R+ALA A+ + + ++
Sbjct: 266 IQLI--NSYPDLETRGTLIENFHMFTFNMNQEVFKDKKLRRALALAVNRPIMVEALWKKQ 323
Query: 576 LE-------PNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIKLIYNAG 628
PN+G P E YN+ +AK++++E+G D + + + N
Sbjct: 324 ASIPAGFNFPNYGETFDPKRKAME-------YNVEEAKRLVKESGYDGTPITYHTMGNYY 376
Query: 629 NSQREKIMTLIQNIWSQLGFKVTVESY 655
+ +M +I+ +W Q+G V +++Y
Sbjct: 377 ANAMPALMMMIE-MWKQIGVNVVMKTY 402
>pir||B75332 extracellular solute-binding protein, family 5 - Deinococcus
radiodurans (strain R1)
>gi|6459743|gb|AAF11508.1|AE002034_1 (AE002034)
extracellular solute-binding protein, family 5
[Deinococcus radiodurans]
Length = 520
Score = 74.9 bits (181), Expect = 3e-12
Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 20/255 (7%)
Query: 447 VGTGPFYVKDYQENSYIVLEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTGTADVA 506
VGTG F ++ ++ + NP YW R+++ D R+ + GT D
Sbjct: 194 VGTGAFILESWKAGDRLNFRPNPNYWGTRSTLD--RLVFRFIKDPAQRLNEVRAGTVDFT 251
Query: 507 AI----PTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAYAI 562
+ T +I+ K +T +++ T + +L N + + KVR+A+ +A+
Sbjct: 252 SNLNPEATAQIKADKRLT-----LVLPTSFNVGLLNM---NVRHPALKNAKVREAIRFAV 303
Query: 563 PYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAGIDPSKYSIK 622
I + L + +P + N AK++L EAG P+ +SI
Sbjct: 304 NRPAIVDAFWGELGSVDNSMLPPSMAWANSKNVPPVKVNAQVAKRLLTEAGY-PNGFSID 362
Query: 623 LIYNAGNSQR----EKIMTLIQNIWSQLGFKVTVESYEWPVYLSKTEKGDYDVYVVGWVP 678
L Y + + + + I +G KV +++ +WP YL G + +Y+ GW
Sbjct: 363 LWYPSISRNYLPTPKPVAEAIAADLGAIGIKVNLKTEDWPKYLEDRRAGVFQMYLYGWGG 422
Query: 679 DYLDSDNWVGPFLYG 693
DY D DN+ F YG
Sbjct: 423 DYNDPDNFYSAF-YG 436
>gb|AAG20588.1| (AE005129) dipeptide ABC transporter ATP-binding; DppD
[Halobacterium sp. NRC-1]
Length = 566
Score = 74.5 bits (180), Expect = 4e-12
Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 21/283 (7%)
Query: 427 KDYVQKGANDATHQLMHKYPVGTGPFYVKDYQ-ENSYIVLEYNPYYWNATDNPGHKRVIY 485
+D ++ DA +L PVGTGPF E + L YW P VI+
Sbjct: 200 RDQIESLGADAQPELGTD-PVGTGPFEFDQLDNETQRVRLTAFDDYWGGA--PSVSAVIF 256
Query: 486 IINSDAVARVQLLTTGTADVAAIPTDKIEDVKGVTK----DNYEIIVKTDILLPVLTFIV 541
R Q L G A + TD + D + + K D+ + K I + ++
Sbjct: 257 KTTGSNQTRAQGLINGDAHI----TDNL-DAQSIQKVSSADSASVRQKNGINVG---YMA 308
Query: 542 FNTQKEP-FNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNY 600
FN ++P F D V++A++ AI D+I +Y P+P G+ + I Y +
Sbjct: 309 FNHDRKPAFRDPLVKRAISMAINRDEIVDSIYQGFAASANQPLPPDVLGHND-DIDSYPH 367
Query: 601 NIAKAKQMLQEAGIDPSKYSIKLIYNAGNSQREKIMTLIQ--NIWSQLGFKVTVESY-EW 657
+ +A+ ML +AG+ + + N I T Q + +++G V + + ++
Sbjct: 368 DPQQAESMLADAGVTDLSFELATFSNPRGYNPNPIQTATQVKSDLAEIGVDVEINQFSQF 427
Query: 658 PVYLSKTEKGDYDVYVVGWVPDYLDSDNWVGPFLYGATEFKEI 700
YL T G +D + GW D D DN++ L+ T+ ++
Sbjct: 428 SAYLEYTYDGRHDACLSGWYTDNADPDNFMYVLLHPGTDIDDV 470
>pir||S77182 oligopeptide transport system permease protein appA - Synechocystis
sp. (strain PCC 6803) >gi|1652821|dbj|BAA17740.1|
(D90908) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 631
Score = 72.2 bits (174), Expect = 2e-11
Identities = 99/453 (21%), Positives = 168/453 (36%), Gaps = 94/453 (20%)
Query: 256 TKEVSPDLAVAWAHNKEGTEWYFVIRGGVKAYDPWHDKTYPIDATDVLFTFWRVARLGHS 315
T E +P LA +W + + F ++ G++ W D P+ DVLF++ L
Sbjct: 104 TGERTPALAESWEISPDNLTITFTLKEGLR----WSDGK-PLTVDDVLFSY-NDLYLNPK 157
Query: 316 VSWMVKTFMNVSASQALTEEEFNEYLKSHPLVAEYHGKTTEVKSLQELLDFFGYKGETAG 375
+ + + V SQA K T+V Q +
Sbjct: 158 IPNNYRDSLKVGESQA-------------------EPKITKVGDRQVAFN---------- 188
Query: 376 VFKLVLPHPYAAILNVVADPFLSVVPMEYLLGDKYEEALKASNYGKNP---DAWKDYVQK 432
+P P+A PFL L E ++ ++ NP W
Sbjct: 189 -----IPEPFA--------PFLETAQFPILPAHILRETVEKTDENGNPLFLSTW------ 229
Query: 433 GANDATHQLMHKYPVGTGPFYVKDYQENSYIVLEYNPYYW----NATDNPGHKRVIYIIN 488
G N Q+ V GP+ + Y + ++ NPYYW N P RV++ I
Sbjct: 230 GTNTPPDQI-----VVNGPYKLTRYVTSQRVIFSKNPYYWEKGPNGESLPYIPRVVWAIV 284
Query: 489 SDAVARVQLLTTGTADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFN----- 543
+ +G+ D +P + +K ++ ++ +++ FN
Sbjct: 285 ESTDTSLLQFRSGSLDSLGVPPESFSLLK-QEEERGNFVIYNGGPTYASSYLTFNLNQGK 343
Query: 544 TQKEP---------FNDVKVRQALAYAIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYG 594
Q +P FN++ RQA+AY I +++ +Y L E IP P +
Sbjct: 344 RQGKPLVDPIKSRWFNNLNFRQAIAYGIDRERMVNNIYRGLGEKQNSFIPVQSPFFNP-D 402
Query: 595 IIKYNYNIAKAKQMLQEAG---------IDPSKYSIKLIY--NAGNSQREKIMTLIQNIW 643
+ YNY+ KA+ +L+ G +D ++ + NAGN RE + T IQ
Sbjct: 403 VKVYNYDPEKAQALLKAGGFTYNNQRQLLDDRGNRVRFVLNTNAGNKVREAMGTQIQEDL 462
Query: 644 SQLGFKVTVESYEWPVYLSKTEKG-DYDVYVVG 675
+LG +V + V + K ++D V+G
Sbjct: 463 GKLGIQVDFSPISFGVLVDKLSNSLEWDAVVLG 495
>pir||S62194 hypothetical protein 4 - Methanosarcina barkeri (fragment)
>gi|1124957|emb|CAA63625.1| (X93084) orf4
[Methanosarcina barkeri] >gi|1587233|prf||2206350A ORF 4
[Methanosarcina barkeri]
Length = 529
Score = 70.6 bits (170), Expect = 6e-11
Identities = 68/254 (26%), Positives = 115/254 (44%), Gaps = 31/254 (12%)
Query: 446 PVGTGPFYVKDYQENSYIV-LEYNPYYWNATDNPGHKRVIYIINSDAVARVQLLTTG--- 501
PVGTGP+ ++ + E + ++ + N +W G ++I D R + G
Sbjct: 207 PVGTGPYKLESFDEQTRVLTVVKNDNWWGG--EVGLDKMILKGIPDPNTRAMAIENGEVD 264
Query: 502 -TADVAAIPTDKIEDVKGVTKDNYEIIVKTDILLPVLTFIVFNTQKEPFNDVKVRQALAY 560
T DV TD+I+ + G+ + Y+ P + + N + EP DV+VRQA++Y
Sbjct: 265 FTVDVPYSETDRIDAIDGINVEKYKT--------PRVYKLDLNLKHEPLEDVRVRQAMSY 316
Query: 561 AIPYDQIAKVVYNNLLEPNWGPIPKPWPGYTEYGIIKYNYNIAKAKQMLQEAG-IDPSKY 619
AI IA+ V N+ E GP P + + Y+ ++ KA ++L AG +D
Sbjct: 317 AIDRSDIAENVLYNVGEAAAGPF-LPTMVWANKSLKPYSQDLEKADELLTAAGWVDTDGD 375
Query: 620 SIK------LIYNAGN-SQREKIMTLIQNIWSQL---GFKVTVESYEWPVYLSKTEKGDY 669
I+ L +N S R + + + + +QL G + E E + E GD+
Sbjct: 376 GIRDKDGQPLKFNLMTYSARPGLPPMAEAMAAQLREAGIGIETEVLEMGSIDDRRESGDW 435
Query: 670 DVYV----VGWVPD 679
D+Y+ + VPD
Sbjct: 436 DLYLAAYNIAMVPD 449
>dbj|BAB18102.1| (AB034969) cyclomaltodextrin binding protein [Thermococcus sp.
B1001]
Length = 441
Score = 70.2 bits (169), Expect = 7e-11
Identities = 40/71 (56%), Positives = 46/71 (64%), Gaps = 7/71 (9%)
Query: 1 MNRALLSLLLVGVLVLGTVASGCIGGGTQTQSPTQ------TASPTQTQTTT-QPQGVTK 53
M +AL +LLL+GVL +G VASGCIGGG T SPTQ T+SPTQT TTT P T
Sbjct: 1 MKKALFALLLIGVLAIGVVASGCIGGGGTTSSPTQTTQTTTTSSPTQTTTTTSSPTQTTT 60
Query: 54 AILELGKVTVV 64
E KVT+V
Sbjct: 61 TTTEEKKVTIV 71
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 290682290
Number of Sequences: 2977
Number of extensions: 13484270
Number of successful extensions: 38312
Number of sequences better than 1.0e-10: 94
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 38017
Number of HSP's gapped (non-prelim): 157
length of query: 705
length of database: 189,106,746
effective HSP length: 55
effective length of query: 650
effective length of database: 156,189,961
effective search space: 101523474650
effective search space used: 101523474650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 168 (69.9 bits)