BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1872 (dppB-2) DE:dipeptide ABC transporter, permease protein
(dppB)
(332 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75118 dipeptide abc transporter, permease protein (dppb) P... 666 0.0
pir||D71014 probable dipeptide transport system permease protein... 633 e-180
pir||B72617 probable dipeptide transport system permease protein... 380 e-104
pir||G71951 dipeptide transport system permease protein - Helico... 256 4e-67
pir||C64557 dipeptide ABC transporter, permease protein - Helico... 252 3e-66
sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 250 1e-65
sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 249 5e-65
pir||A72289 oligopeptide ABC transporter, permease protein - The... 233 2e-60
dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) ... 233 3e-60
gi|11499357 dipeptide ABC transporter, permease protein (dppB) [... 230 2e-59
sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 227 2e-58
pir||F75454 peptide ABC transporter, permease protein - Deinococ... 224 9e-58
dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permeas... 223 3e-57
sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 217 1e-55
sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 211 1e-53
pir||C83082 probable permease of ABC transporter PA4503 [importe... 209 4e-53
pir||F72720 probable oligopeptide transport system permease prot... 206 4e-52
gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; Dp... 205 9e-52
pir||F72451 probable peptide transport system permease protein A... 196 4e-49
pir||D75202 dipeptide abc transporter, dipeptide-binding protein... 192 6e-48
pir||B70789 probable peptidetransport system permease - Mycobact... 191 1e-47
emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter... 189 6e-47
sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 188 1e-46
pir||B72367 oligopeptide ABC transporter, permease protein - The... 187 2e-46
gi|10954943 Probable accD [Agrobacterium tumefaciens] >gi|649829... 187 2e-46
sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 186 3e-46
gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-... 186 4e-46
sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 184 1e-45
dbj|BAB04287.1| (AP001509) nickel transport system (permease) [B... 184 1e-45
pir||F72371 oligopeptide ABC transporter, permease protein - The... 183 2e-45
pir||S47696 nickel transport system permease protein nikB - Esch... 183 3e-45
emb|CAC05748.1| (AL391751) putative peptide transport system int... 181 9e-45
dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [O... 178 8e-44
gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T... 177 1e-43
pir||T34758 oligopeptide transport system integral membrane prot... 177 2e-43
pir||E70343 transporter (OppBC family) - Aquifex aeolicus >gi|29... 176 2e-43
sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 175 9e-43
sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 174 1e-42
gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T... 173 2e-42
pir||T03433 probable transport protein accD - Agrobacterium tume... 173 2e-42
pir||B38447 oligopeptide permease oppB homolog - Bacillus subtil... 173 3e-42
dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permeas... 172 5e-42
pir||C82242 oligopeptide ABC transporter, permease protein VC109... 172 6e-42
emb|CAC11408.1| (AL445063) dipeptide transport system permease p... 171 1e-41
dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Ba... 169 4e-41
gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [... 168 1e-40
pir||C70141 oligopeptide ABC transporter, permease protein (oppB... 167 2e-40
pir||F72215 oligopeptide ABC transporter, permease protein - The... 165 8e-40
sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 164 1e-39
pir||F75529 probable peptide ABC transporter, permease protein -... 164 1e-39
pir||B75381 peptide ABC transporter, permease protein - Deinococ... 163 2e-39
dbj|BAA14776.1| (D90763) Oligopeptide transport system permease ... 162 4e-39
pir||C71130 probable oligopeptide transport permease protein APP... 162 5e-39
sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 162 7e-39
dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permeas... 161 9e-39
sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 160 2e-38
pir||S77118 oligopeptide transport system permease protein appB ... 159 5e-38
pir||H72428 oligopeptide ABC transporter, permease protein - The... 155 9e-37
gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola] 154 1e-36
gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis] 154 2e-36
gb|AAC69838.1| (AF076683) oligopeptide transporter putative memb... 153 2e-36
gb|AAC67218.1| (U78968) transmembrane transport protein DppB [St... 153 3e-36
gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis] 153 3e-36
emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.] 152 6e-36
sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 151 1e-35
sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 149 4e-35
gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis] 149 5e-35
sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 147 1e-34
pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC... 146 4e-34
pir||D75573 peptide ABC transporter, permease protein - Deinococ... 144 1e-33
pir||B82356 peptide ABC transporter, permease protein VC0172 [im... 144 1e-33
dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permeas... 143 3e-33
gi|10954708 hypothetical ABC-transporter gene~similar to agaB ge... 142 7e-33
dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus] 141 1e-32
sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 139 4e-32
pir||A75142 oligopeptide transport system permease protein appb ... 138 7e-32
pir||A71212 probable oligopeptide transport system permease prot... 132 6e-30
pir||C82170 peptide ABC transporter, permease protein VC1681 [im... 132 7e-30
pir||T35939 probable transport permease protein - Streptomyces c... 131 1e-29
pir||A75027 oligopeptide transport permease protein appb PAB1194... 129 5e-29
sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 128 8e-29
gb|AAC69843.1| (AF076684) oligopeptide transporter putative memb... 128 8e-29
gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB... 127 1e-28
pir||E72300 oligopeptide ABC transporter, permease protein - The... 127 2e-28
emb|CAC12449.1| (AL445067) dipeptide transport system, permease ... 126 4e-28
gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1] 124 2e-27
pir||A72537 probable oligopeptide transport permease protein APE... 124 2e-27
gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S7... 123 2e-27
pir||F81699 peptide ABC transporter, permease protein TC0472 [im... 123 2e-27
emb|CAA10910.1| (AJ222649) sapB [Erwinia chrysanthemi] 123 3e-27
pir||C71545 probable oligopeptide permease - Chlamydia trachomat... 122 8e-27
pir||C64676 oligopeptide ABC transporter, permease protein - Hel... 121 1e-26
pir||E72424 oligopeptide ABC transporter, permease protein - The... 121 1e-26
pir||B72393 oligopeptide ABC transporter, permease protein - The... 121 1e-26
pir||C71841 probable peptide ABC transporter, ATP-binding protei... 120 2e-26
pir||F83419 probable permease of ABC transporter PA1809 [importe... 120 2e-26
pir||B71163 probable oligopeptide transport system permease prot... 119 5e-26
pir||E72107 peptide ABC transporter, permease protein CP0568 [im... 119 5e-26
pir||C72284 oligopeptide ABC transporter, permease protein - The... 119 5e-26
pir||D72282 oligopeptide ABC transporter, permease protein - The... 117 2e-25
pir||H72420 oligopeptide ABC transporter, permease protein - The... 115 1e-24
pir||H75068 dipeptide abc transporter, permease protein (dppb) P... 114 2e-24
pir||D72059 peptide ABC transporter, permease protein, probable ... 109 4e-23
dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila ... 109 4e-23
emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyo... 109 6e-23
sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 108 8e-23
gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB... 108 8e-23
gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halob... 108 1e-22
pir||H83388 probable permease of ABC transporter PA2059 [importe... 107 2e-22
pir||E82442 probable peptide ABC transporter, permease protein V... 107 2e-22
emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methan... 105 9e-22
emb|CAA68074.1| (X99740) oligopeptide transport system permease ... 104 2e-21
pir||E81253 probable peptide ABC-transport system permease prote... 103 3e-21
emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related prote... 101 2e-20
dbj|BAB13783.1| (AB038238) NikB [Vibrio parahaemolyticus] 98 1e-19
gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonel... 98 2e-19
gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus] 95 1e-18
gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus sol... 95 1e-18
gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhod... 92 7e-18
gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus sol... 87 3e-16
emb|CAC17495.1| (AL450432) putative metal transport integral mem... 85 1e-15
>pir||B75118 dipeptide abc transporter, permease protein (dppb) PAB1872 -
Pyrococcus abyssi (strain Orsay)
>gi|5458170|emb|CAB49659.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 332
Score = 666 bits (1701), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60
MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH
Sbjct: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60
Query: 61 LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG
Sbjct: 61 LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI
Sbjct: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG
Sbjct: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
Query: 241 VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300
VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV
Sbjct: 241 VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300
Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY
Sbjct: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
>pir||D71014 probable dipeptide transport system permease protein dppB -
Pyrococcus horikoshii >gi|3257833|dbj|BAA30516.1|
(AP000006) 332aa long hypothetical dipeptide transport
system permease protein dppB [Pyrococcus horikoshii]
Length = 332
Score = 633 bits (1614), Expect = e-180
Identities = 305/332 (91%), Positives = 325/332 (97%)
Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60
MANLKKFLIRR+LTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKAT++AIELIKKMYH
Sbjct: 1 MANLKKFLIRRLLTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATQQAIELIKKMYH 60
Query: 61 LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
LD PWYDQYVFLIKGLI NTIIDPRTSNP+M D+GKRFPVT QLAIIAF FILIIGIPLG
Sbjct: 61 LDRPWYDQYVFLIKGLIANTIIDPRTSNPIMYDVGKRFPVTLQLAIIAFIFILIIGIPLG 120
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
IISALKRN+W+DTVVRIFALLGVSTPAFWLGYLM+YIFFVKY++TTIAGVPP P+PIT++
Sbjct: 121 IISALKRNTWVDTVVRIFALLGVSTPAFWLGYLMIYIFFVKYKVTTIAGVPPMPKPITYV 180
Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
PMIDALLRGNF+LFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYV FLKAKG
Sbjct: 181 PMIDALLRGNFDLFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVLFLKAKG 240
Query: 241 VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300
VPKMR+YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQ+IQNLDFPV
Sbjct: 241 VPKMRVYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQSIQNLDFPV 300
Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
V+A+TFIYAIIYVTINLIVD+LYA+IDPRVRY
Sbjct: 301 VIAITFIYAIIYVTINLIVDVLYAIIDPRVRY 332
>pir||B72617 probable dipeptide transport system permease protein APE1395 -
Aeropyrum pernix (strain K1) >gi|5105078|dbj|BAA80392.1|
(AP000061) 336aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 336
Score = 380 bits (965), Expect = e-104
Identities = 178/332 (53%), Positives = 245/332 (73%)
Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60
++NL +FL+RR+LTFIPT++GVT + FLIA +P +PAK WAGGEKA+ E +E I + Y
Sbjct: 5 VSNLTRFLVRRLLTFIPTLVGVTFVTFLIATVVPGNPAKLWAGGEKASPEVVEQIVREYR 64
Query: 61 LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
LD P+++QY F + L+TNT+I P TSN V I +R PVT QL ++AF FI+++GIPLG
Sbjct: 65 LDRPFWEQYFFFMYKLLTNTMISPVTSNYVWDMIVERLPVTIQLTLLAFVFIILLGIPLG 124
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
IISAL R++ ID +RI AL+G+S P FWL YL++++F+ KYRL T+AG P P IT I
Sbjct: 125 IISALTRDTIIDAAIRIMALVGISVPIFWLAYLLIFVFYTKYRLITLAGTPEPPYSITGI 184
Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
P+ID+++ + F+ L R+ +P FTL + +G AR VRNSFL+A+S DYV+F+ A+G
Sbjct: 185 PLIDSIIMLDAATFEDVLRRYTIPAFTLAYPSIGFVARLVRNSFLDAMSGDYVEFMDARG 244
Query: 241 VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300
+P YRH L+N+ +PIVTVLGL FGGLL G PITET+FGLPG+G + + +I N D+
Sbjct: 245 LPSTWKYRHILRNSSIPIVTVLGLIFGGLLTGAPITETIFGLPGLGKFLLDSINNYDYLS 304
Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
++ IIY+T+NL+VDI YA+IDPRVRY
Sbjct: 305 LMGGVLFVGIIYLTVNLLVDITYAIIDPRVRY 336
>pir||G71951 dipeptide transport system permease protein - Helicobacter pylori
(strain J99) >gi|4154809|gb|AAD05865.1| (AE001465)
DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN
[Helicobacter pylori J99]
Length = 334
Score = 256 bits (646), Expect = 4e-67
Identities = 133/330 (40%), Positives = 201/330 (60%), Gaps = 6/330 (1%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F+I+RIL IPT+ GV++IVF++ + +P DPA G EKA + AI+ +++ + L++P
Sbjct: 4 FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILG-EKANQAAIDALREQFGLNKPLI 62
Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
+QY F I ++ T PVM + +RFP T +LA+IA F L++GI +G+++A+
Sbjct: 63 EQYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLAAI 122
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPP---FPEPITHIPM 182
KR S D FAL G+S P FWLG +++YIF V+ + G + + T + +
Sbjct: 123 KRYSMFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGLYL 182
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
ID+L+ G++ F + LP L + V AR R S E DYV+ KAKG
Sbjct: 183 IDSLIAGDYGAFVDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKGCS 242
Query: 243 KMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
R I+ H L+NAL+P+ T+ GL GLLGG+ ITETVF PG+G + V A+ DFP++
Sbjct: 243 SFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFPII 302
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+++ I A++Y+ NL+VD+LYA IDPR+R
Sbjct: 303 QSMSLIIAMMYIGANLLVDVLYAFIDPRIR 332
>pir||C64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313397|gb|AAD07368.1| (AE000548)
dipeptide ABC transporter, permease protein (dppB)
[Helicobacter pylori 26695]
Length = 334
Score = 252 bits (638), Expect = 3e-66
Identities = 133/330 (40%), Positives = 200/330 (60%), Gaps = 6/330 (1%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F+I+RIL IPT+ GV++IVF++ + +P DPA G EKA + AI+ +++ + L++P
Sbjct: 4 FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILG-EKANQAAIDALREQFGLNKPLI 62
Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
+QY F I ++ T PVM + +RFP T +LA+IA F L++GI +G+++A+
Sbjct: 63 EQYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLAAI 122
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPP---FPEPITHIPM 182
KR S D FAL G+S P FWLG +++YIF V+ + G + + T + +
Sbjct: 123 KRYSVFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGLYL 182
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
ID+L+ ++ F + LP L + V AR R S E DYV+ KAKG
Sbjct: 183 IDSLIARDYGAFMDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKGCS 242
Query: 243 KMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
R I+ H L+NAL+P+ T+ GL GLLGG+ ITETVF PG+G + V A+ DFP++
Sbjct: 243 SFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFPII 302
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+++ I A++Y+ NL+VDILYA IDPR+R
Sbjct: 303 QSMSLIIAMMYIGANLLVDILYAFIDPRIR 332
>sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDR
>gi|7449121|pir||A64902 peptide transport system
permease protein b1486 - Escherichia coli
>gi|1742426|dbj|BAA15141.1| (D90789) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1742437|dbj|BAA15151.1| (D90790) Dipeptide transport
system permease protein DppB. [Escherichia coli]
>gi|1787761|gb|AAC74559.1| (AE000245) putative transport
system permease protein [Escherichia coli K12]
Length = 340
Score = 250 bits (633), Expect = 1e-65
Identities = 137/329 (41%), Positives = 203/329 (61%), Gaps = 7/329 (2%)
Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67
L +R + + GV +I F+I++ IP DPA+ AG ++A+ +E I++ LD+P Y
Sbjct: 7 LRQRCWGLVLVVAGVCVITFIISHLIPGDPARLLAG-DRASDAIVENIRQQLGLDQPLYV 65
Query: 68 QYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126
Q+ + L + RT PV+ ++ FP T +LA A L+IGIPLGI+SA+
Sbjct: 66 QFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLELAFGALLLALLIGIPLGILSAVW 125
Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG-VPPFPEPITHIP---M 182
RN W+D +VRI A+ G+STPAFWLG ++ +F+ ++ G + + +P TH+ +
Sbjct: 126 RNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGFYL 185
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
+DALL GN E+F L LP TL F+ +G+ AR +R++ LE LS DY++ +A G+P
Sbjct: 186 LDALLEGNGEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLP 245
Query: 243 KMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
I +AL NAL+P +TVLGL G LL G +TETVF PGMG++ V +IQ LDFP V
Sbjct: 246 GWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAV 305
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRV 330
+ + + YV +NL+VD+LY IDPR+
Sbjct: 306 MGFAVVVSFAYVLVNLVVDLLYLWIDPRI 334
>sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|11279742|pir||T44636 dipeptide transport protein
dppB [imported] - Bacillus firmus
>gi|1813496|gb|AAB41689.1| (U64514) dipeptide
transporter protein dppB [Bacillus firmus]
Length = 333
Score = 249 bits (628), Expect = 5e-65
Identities = 134/331 (40%), Positives = 202/331 (60%), Gaps = 6/331 (1%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
+ +RR+L IP +IG+T++ F I + IP +PA+ G E+A+ +AI +++ L+EP++
Sbjct: 4 YAMRRLLLLIPVLIGMTIVTFSIIHLIPGNPAQTILG-EQASPQAIADLEERLGLNEPYW 62
Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
QY +K L T + RT+ P+M +I T +L I A F +IIG+ GI+SA
Sbjct: 63 VQYGLYMKDLATGDLGTSLRTNKPIMEEIWPYLAATIELTIFAMIFAIIIGVNAGIVSAW 122
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI---THIPM 182
K+NSW D + AL+GVS P FWL + +IF + G +PI T + +
Sbjct: 123 KQNSWFDYLSMFIALVGVSMPIFWLALMEQWIFAQELGWLPAFGRDNPRDPIISTTGLYV 182
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
D ++ G F+ + + LPG LG + M + AR R+S LE L SDY++ + AKG
Sbjct: 183 FDTIISGQFDKTWESIKHLILPGIALGTIPMAIIARMTRSSMLEVLRSDYIRTVNAKGSG 242
Query: 243 K-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ + IY+HALKNAL+P++TV+GLQ G LLGG +TET+F PG+G Y +AI D+PV+
Sbjct: 243 QGVVIYKHALKNALIPVLTVVGLQTGNLLGGAILTETIFSWPGIGRYIFEAINYRDYPVI 302
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ + A I+V INL VD+LY+ IDPR++Y
Sbjct: 303 QSGILVVATIFVLINLFVDLLYSYIDPRIKY 333
>pir||A72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981697|gb|AAD36225.1|AE001772_4 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 233 bits (589), Expect = 2e-60
Identities = 138/338 (40%), Positives = 200/338 (58%), Gaps = 12/338 (3%)
Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLD 62
+LK ++I RIL P I + ++FL+ IP DP A GG KA KE IE + LD
Sbjct: 2 SLKNYVITRILLAAPMIFILLALIFLVLRIIPGDPVLAILGG-KAPKEVIEQKRHELGLD 60
Query: 63 EP----WYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIP 118
+P ++D L+KG + + + T PV +I +RFP T +L + AF ++IGI
Sbjct: 61 KPIIVQFFDYIGDLLKGDLGKSTL---TGRPVWEEIKERFPATLELTLFAFIVAVLIGIF 117
Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG-VPPFP--E 175
G +A KR+S +D R+F+++ + P FW G +M YIF V R + G + P +
Sbjct: 118 WGSFAAYKRDSGVDIGARMFSMVMYAVPVFWFGLMMQYIFGVILRWLPVGGRLSPTMNLK 177
Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235
IT I IDAL GN+E K LPG TLG + V R VRN+ + L+ D+V+
Sbjct: 178 VITGIYSIDALFTGNWEALKDVFEHLLLPGLTLGLVISSVFVRMVRNNTVLTLAQDFVKA 237
Query: 236 LKAKGVP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294
+A+G+ ++ ++R+ALKNALVPI T++GLQF LLGG +TET F PG+GSY V I+
Sbjct: 238 ARARGLKERVVLFRYALKNALVPIFTMMGLQFALLLGGAVLTETTFSWPGLGSYLVMKIR 297
Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
DFP + +A+I V I+++VD++ A+IDPRVRY
Sbjct: 298 YRDFPAIQGTVVFFALIVVVISILVDVINALIDPRVRY 335
>dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 333
Score = 233 bits (587), Expect = 3e-60
Identities = 127/331 (38%), Positives = 199/331 (59%), Gaps = 6/331 (1%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
+++ R++ IP +IG+T+I F I + IP +PA+ G E+A+ +A+ +++ L+EP+
Sbjct: 4 YVLHRVMLLIPVLIGMTIITFSIVHLIPGNPAQTILG-EQASPQAVAELEERLGLNEPYL 62
Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
QY + ++ L+T RT P+ +I T +L A F +++G+ GIISA
Sbjct: 63 VQYGYYVRDLLTGDFGTSLRTRAPISEEIVPYLGATLELTFFAMLFAVVVGVNAGIISAW 122
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI---THIPM 182
K++S+ D + ALLGVS P FWL + +IF + G +PI T + +
Sbjct: 123 KQHSFFDYACMLVALLGVSMPIFWLALMQQWIFAQELGWFPAFGRDNPRDPIQSITGLYV 182
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
+DA+L ++ L LP LG + M + AR R+S LE L SDY++ + AKG
Sbjct: 183 LDAILHWRWDHVHVALKHLVLPAIALGTIPMAIIARMTRSSMLEVLRSDYIRTVHAKGSS 242
Query: 243 K-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ + IY+HALKNA++P++TV GLQ G LLGG +TET+F PG+G Y +AI D+PV+
Sbjct: 243 QFVVIYKHALKNAMIPVLTVAGLQTGVLLGGAILTETIFSWPGIGRYIYEAITYRDYPVI 302
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ + AI++V INLIVD+LY+ IDPR++Y
Sbjct: 303 QSGILVVAIMFVVINLIVDLLYSYIDPRIKY 333
>gi|11499357 dipeptide ABC transporter, permease protein (dppB) [Archaeoglobus
fulgidus] >gi|7449122|pir||G69470 dipeptide ABC
transporter, permease protein (dppB) homolog -
Archaeoglobus fulgidus >gi|2648780|gb|AAB89482.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppB) [Archaeoglobus fulgidus]
Length = 354
Score = 230 bits (581), Expect = 2e-59
Identities = 120/337 (35%), Positives = 199/337 (58%), Gaps = 6/337 (1%)
Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60
M++L ++I R L IPT++ + IVFLI IP DP A G +K +E +E ++
Sbjct: 19 MSSLPAYIITRFLMVIPTVLILLTIVFLILRIIPGDPITAMVG-QKVPEEVLEKLRHEAG 77
Query: 61 LDEPWYDQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIP 118
LD+P+++QY+ +KG+ T + PV+ +I FP T +L I F ++IG+
Sbjct: 78 LDKPYHEQYIEYLKGVFTGDLGKSMIWGKRPVIAEIMDHFPATLELTIFGFILSVLIGVA 137
Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG-VPP--FPE 175
G I+A +R S +D+ +RI++++ + W G L+ +F V ++ I G + P PE
Sbjct: 138 TGSIAAFRRGSKVDSGMRIYSIVAYTLFIPWFGMLLQMLFGVYLKVLPIGGRITPGNTPE 197
Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235
IT + ++D++L NF LA LP TLG + G R +RN+ ++ LS D+++
Sbjct: 198 TITGLYVLDSILTLNFNSLIDALAHLALPAITLGIVLSGAYTRLLRNNLIDVLSQDFIKA 257
Query: 236 LKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQN 295
+A+GV ++ HA+KNA +P+VT++GLQF LL G +TE+ F PGMG++ ++ I+
Sbjct: 258 YRARGVRNRKVVFHAMKNAFIPVVTLMGLQFAILLAGAVLTESTFSWPGMGTFLIERIEY 317
Query: 296 LDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
D+ V YA+ I+L+VD++YA++DPR+RY
Sbjct: 318 RDYTSVQGAIVFYAVFVALISLVVDVIYALLDPRIRY 354
>sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1073367|pir||S47765 dipeptide transport system
permease protein dppb - Escherichia coli
>gi|349226|gb|AAA23703.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466682|gb|AAB18521.1| (U00039)
dppB [Escherichia coli] >gi|1789965|gb|AAC76568.1|
(AE000431) dipeptide transport system permease protein 1
[Escherichia coli K12]
Length = 339
Score = 227 bits (572), Expect = 2e-58
Identities = 121/335 (36%), Positives = 188/335 (56%), Gaps = 8/335 (2%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
+F++RR+ IPT IG+TL+ F + IP DP AG + E + LD+P
Sbjct: 3 QFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPM 62
Query: 66 YDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124
+ QY+ I G++ + I ++ PV + RF T +L + A F +GIP+G+++A
Sbjct: 63 WQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAA 122
Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG------VPPFPEPIT 178
+KR S D AL G S P FW G +++ + V + LT ++G P+T
Sbjct: 123 VKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPLT 182
Query: 179 HIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKA 238
+ID + G F +A LP LG + + V R R+S LE L DY++ +A
Sbjct: 183 GFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARA 242
Query: 239 KGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297
KG+ +MR I HAL+NA++P+VTV+GLQ G LL G +TET+F PG+G + + A+Q D
Sbjct: 243 KGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRD 302
Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+PVV + A + + +NL+VD+LY V++PR+R+
Sbjct: 303 YPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRH 337
>pir||F75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458683|gb|AAF10534.1|AE001948_3
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 345
Score = 224 bits (566), Expect = 9e-58
Identities = 134/350 (38%), Positives = 192/350 (54%), Gaps = 33/350 (9%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW- 65
+LIRR+L + ++G++L+VF IP P A G E+ T E+I D PW
Sbjct: 4 YLIRRLLRTLLVMLGISLLVFTFVRLIPGGPCTAILG-ERGTPESIAACNHDRGFDRPWF 62
Query: 66 -------------YDQYVF-LIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFF 111
Y +Y+ L++G + +II T PV D+ RFP T +LA A F
Sbjct: 63 FNAGGEGGALNAQYPEYMAGLLRGDLDKSII---TQIPVKEDLKTRFPATVELAFAALIF 119
Query: 112 ILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVP 171
L++G+P GII+AL+RNS D + +L+GVS P FWLG L+ Y F VK + +P
Sbjct: 120 ALLVGLPAGIIAALRRNSLWDNLATTISLIGVSMPVFWLGLLLSYFFGVK-----LGWLP 174
Query: 172 PFP--------EPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNS 223
P + IT + ++D LLRG LP LG + + + AR R+S
Sbjct: 175 PSARLGTEFDLQSITGMNVLDGLLRGQPAAAWDAAKHLVLPAIALGTIPLAIIARITRSS 234
Query: 224 FLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGL 282
L+ L DYV+ +AKG+ I +HAL+NAL+PIVTV+GLQ GGLLGG +TET+F
Sbjct: 235 LLDVLGQDYVRTARAKGLSARNITLKHALRNALLPIVTVIGLQIGGLLGGAVLTETIFSW 294
Query: 283 PGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
G+GS+ AI DF V+ A++ +NL+VD+ YA +DPR++Y
Sbjct: 295 NGVGSWLYDAISARDFFVIQGGVIFIALVISLVNLLVDLSYAALDPRIQY 344
>dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 314
Score = 223 bits (562), Expect = 3e-57
Identities = 127/327 (38%), Positives = 194/327 (58%), Gaps = 22/327 (6%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F+IRR+L IP +IGV++IVF + + +P DPA AG E A ++ +E I++ L++P
Sbjct: 4 FIIRRLLQTIPVLIGVSIIVFSLLHLVPGDPAIMIAG-ESAPQQTVENIRERLGLNDPVP 62
Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
QY + G+I + R+ PV DI +RF VT +L+I + + +G+ GI+SA
Sbjct: 63 VQYFNYVSGVIQGDLGTSFRSGRPVADDIAQRFWVTLELSIYSIILSVFLGLIAGIVSAT 122
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185
KR S+ DT + I AL G+S P FWLG +++ F + Y +P A
Sbjct: 123 KRYSFADTSLMIIALFGLSMPNFWLGLMLIQWFAIGYT--------------PWLPFDTA 168
Query: 186 LLR-GNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP-K 243
+ F+Q + LP TLG G + AR R+S LE L DY++ +AKGV +
Sbjct: 169 WFAPSGWGSFRQIV----LPVITLGTAGAAIVARMTRSSMLEVLHQDYIRTARAKGVKER 224
Query: 244 MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVA 303
+ +YRHALKNAL+P+VTV+G+QFG LLGG+ +TE VF + G+G ++AI+ DFPVV
Sbjct: 225 VVVYRHALKNALIPVVTVVGIQFGFLLGGSVLTEQVFAINGLGRLIIEAIRQRDFPVVQG 284
Query: 304 VTFIYAIIYVTINLIVDILYAVIDPRV 330
+ ++++V +NL+VDI Y ++ R+
Sbjct: 285 AVLVISVLFVFVNLLVDITYRFLNKRI 311
>sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|1074012|pir||G64188 transmembrane protein dppB -
Haemophilus influenzae (strain Rd KW20)
>gi|972895|gb|AAA95972.1| (U17295) DppB [Haemophilus
influenzae] >gi|1574114|gb|AAC22840.1| (U32798)
dipeptide ABC transporter, permease protein (dppB)
[Haemophilus influenzae Rd]
Length = 333
Score = 217 bits (548), Expect = 1e-55
Identities = 128/337 (37%), Positives = 184/337 (53%), Gaps = 16/337 (4%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
KF+ +RIL IPT I +TLI F + + IP DP + G T E + + LD P
Sbjct: 3 KFVFKRILMVIPTFIAITLITFALVHFIPGDPVEIMMGERGLTAEVHQQMMHQLGLDLPL 62
Query: 66 YDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124
Y QY I +I RT PV+T+ FP T +LA A F+ L+ GI LG I+A
Sbjct: 63 YQQYFHYIGNVIQGDFGASFRTQQPVLTEFFTLFPATAELAFFALFWSLLGGIILGTIAA 122
Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPP--------FPEP 176
+K++SWI V +L G S P FW G ++ I +V +L G+P + +
Sbjct: 123 VKKDSWISHTVTAASLTGYSMPIFWWGLIL--ILYVSPQL----GLPQGGRLDNEFWIDT 176
Query: 177 ITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFL 236
T +ID+ L G F+ + LP LG + + + R R++ LE L DY++
Sbjct: 177 PTGFMLIDSWLSGVSGAFENAVKSLILPAIVLGTVPLAIITRMTRSAMLEVLGEDYIRTA 236
Query: 237 KAKGVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQN 295
KAKG+ RI HAL+NAL+P+VTV+GL LL G +TET+F PG+G + + AIQ
Sbjct: 237 KAKGLSYTRIVIVHALRNALIPVVTVVGLIVAQLLSGAVLTETIFSWPGIGKWIIDAIQA 296
Query: 296 LDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
D+PV+ I A I + +NL VD+LY V++PR+R+
Sbjct: 297 RDYPVLQGSVLIIATIIIVVNLTVDLLYGVVNPRIRH 333
>sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLIC
>gi|7442416|pir||G64820 probable oligopeptide transport
protein b0831 - Escherichia coli
>gi|1787053|gb|AAC73918.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062408|dbj|BAA35526.1| (D90721) Hypothetical
protein o314 [Escherichia coli]
>gi|4062416|dbj|BAA35534.1| (D90722) Hypothetical
protein o314 [Escherichia coli]
Length = 306
Score = 211 bits (531), Expect = 1e-53
Identities = 118/328 (35%), Positives = 186/328 (55%), Gaps = 28/328 (8%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
++I+R+L IPT+ V+++VFL + +P DPA+ AG E A + IEL+++ LD+P Y
Sbjct: 4 YVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPE-ADAQVIELVRQQLGLDQPLY 62
Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
Q+ I + + + PV +I RF T L I + + +I G+ GII+A+
Sbjct: 63 HQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAV 122
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185
RN W D + A+ G+S PAF LG L++ +F V+ G +
Sbjct: 123 WRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSW------------ 170
Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMR 245
QH + LP TLG V ARF R SF++ LS DY++ +AKGV +
Sbjct: 171 ----------QH---YILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETW 217
Query: 246 IY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304
+ +H L+NA++P+VT++GLQFG LLGG+ + E VF PG+G V +++ D+PV+ A
Sbjct: 218 VVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAE 277
Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVRY 332
++++ ++ INL+VD+LYA I+P +RY
Sbjct: 278 ILLFSLEFILINLVVDVLYAAINPAIRY 305
>pir||C83082 probable permease of ABC transporter PA4503 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950743|gb|AAG07891.1|AE004864_3 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 336
Score = 209 bits (526), Expect = 4e-53
Identities = 120/331 (36%), Positives = 175/331 (52%), Gaps = 5/331 (1%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F+ RR+ IPT GVTL+ F + IP DP + G + + LD+P Y
Sbjct: 4 FIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQMHAEALHRLGLDKPLY 63
Query: 67 DQYVFLIKGLITNTIIDP-RTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
QY+ + L + RT PV + F T +L+ A F +G+ G+++AL
Sbjct: 64 QQYLDYVGNLAQGNLGKSIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAAL 123
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIA---GVPPFPEPITHIPM 182
KR S D V +L G S P FW G L++ +F V T ++ GV EP T +
Sbjct: 124 KRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSLGWTPVSDRIGVLYEVEPKTGFML 183
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
ID LL F + LP LG + + V AR R++ LE L DYV+ +AKG+
Sbjct: 184 IDTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAKGLS 243
Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
R+ + HAL+NAL+P++TVLGLQ G LL G +TET+F PG+G + + AI D+PVV
Sbjct: 244 PARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVV 303
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ A + + +N +VDILY + +PR+R+
Sbjct: 304 QNGILLVATLVILVNFVVDILYGLANPRIRH 334
>pir||F72720 probable oligopeptide transport system permease protein oppB
APE0303 - Aeropyrum pernix (strain K1)
>gi|5103942|dbj|BAA79258.1| (AP000059) 342aa long
hypothetical oligopeptide transport system permease
protein oppB [Aeropyrum pernix]
Length = 342
Score = 206 bits (518), Expect = 4e-52
Identities = 116/345 (33%), Positives = 196/345 (56%), Gaps = 21/345 (6%)
Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDE 63
L K++I R L+ IPT+ G++++VF++ ++ DPA + + T E ++ ++++YH D+
Sbjct: 2 LIKYIIYRFLSAIPTLFGLSILVFILT-RLVGDPAAIYIHPDM-TPEDVQRVRELYHFDD 59
Query: 64 PWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRF-PVTFQLAIIAFFFILIIGIPLGII 122
P Y QY++ +KG++ + T+N +T+ K F P T +LA+ AF +I+G+ LG
Sbjct: 60 PLYVQYIYWLKGVLQGDLGYSVTANMPVTEAIKSFLPATLELALYAFTLSIIVGVYLGTK 119
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG------------V 170
+A ++ ID + R+ AL G S P FWL ++LY+F Y + G +
Sbjct: 120 AAANKDKLIDHLTRLLALSGYSMPVFWLALMLLYLF---YNVLDFVGPGRLSLEVRFKYM 176
Query: 171 PPFPEP--ITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEAL 228
PP+ + T + IDALL N E+F + P T ++ + + R +R+S +E +
Sbjct: 177 PPYGDFKFYTGLLTIDALLNRNIEVFIDAVKHLIPPVLTQTYIHIAIFIRVLRSSMIEEM 236
Query: 229 SSDYVQFLKAKGVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGS 287
+ +YV F +KG+ + + + + +N+ + +V V GLQF GL+ G +TETVF PG+G
Sbjct: 237 NKEYVDFALSKGLRREVVLKDYVRRNSYISLVNVAGLQFVGLMSGVVLTETVFNWPGLGR 296
Query: 288 YAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+A A LD VV T +++ +NL VDIL A +DPR+RY
Sbjct: 297 FAANAAIQLDPAAVVGFTLFVGTLFIVVNLAVDILLAYLDPRIRY 341
>gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; DppB2 [Halobacterium
sp. NRC-1]
Length = 347
Score = 205 bits (515), Expect = 9e-52
Identities = 116/350 (33%), Positives = 193/350 (55%), Gaps = 30/350 (8%)
Query: 5 KKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEP 64
K+F+++R+L +P + GV VF+I + DPA+ G ++ I+L +++ L++P
Sbjct: 4 KRFILKRLLLLVPVLFGVATFVFVILHLASGDPARVILGQRAPQQQVIQLRQEL-GLNDP 62
Query: 65 WYDQYV-FLIKGLITN--TIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121
Y QY FL+ + V + + + PVT +LA+ +++GIPLG+
Sbjct: 63 VYVQYARFLVDAAQFDFGQSYSVAQGTAVRSVLADKIPVTLELALYGQAIGILLGIPLGV 122
Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE------ 175
ISA+++++ D RI AL G+S P +W G L++ F +T GV P
Sbjct: 123 ISAVEQDTLTDHFGRIGALSGISVPIYWSGPLLILAF------STFLGVFPASGRIESTI 176
Query: 176 -------------PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRN 222
P+T + +D LL GN + + LP T+G M + +R +R+
Sbjct: 177 FLADSWSLFGVTLPLTGMLTVDTLLLGNVSAWVSAVMHLILPAATIGIYSMALISRMMRS 236
Query: 223 SFLEALSSDYVQFLKAKGV-PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFG 281
S LE + DY++ +AKG K+ I +H +NALVP++TV+G+QFG LLGG +TETVFG
Sbjct: 237 SMLEVVRQDYMRTARAKGQGSKITIMKHGFRNALVPVITVIGIQFGSLLGGAVLTETVFG 296
Query: 282 LPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ G+G+ V AI D+P+V +A+++ +NL+VD+ Y+ +DPR++
Sbjct: 297 IEGIGTILVSAINANDYPLVQGTVLTFALLFTLVNLLVDVTYSYLDPRIQ 346
>pir||F72451 probable peptide transport system permease protein APE2258 -
Aeropyrum pernix (strain K1) >gi|5105959|dbj|BAA81270.1|
(AP000064) 339aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 339
Score = 196 bits (492), Expect = 4e-49
Identities = 107/335 (31%), Positives = 184/335 (53%), Gaps = 6/335 (1%)
Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLD 62
+L ++ + R L +PT++ + +VF++ IP DP A G E +E I++ LD
Sbjct: 6 SLLRYAVTRALAIVPTVLILYTVVFIVLRVIPGDPVTAALGTRSIPPEELEAIRERLGLD 65
Query: 63 EPWYDQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
+P + QY+ + G++ + T PV DI +RFP T +L I F +++G+ G
Sbjct: 66 QPLWRQYIDYLLGVMRGDFGESMTLYGRPVARDIMERFPATLELTIFGFIVSVVLGVGSG 125
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG-VPPFP--EPI 177
+++A R +D ++R +++ + WLG ++ Y+F +K + G + P + +
Sbjct: 126 VVAAF-RGGLVDRLLRTSSIVAYTLFIPWLGLMLKYVFSIKLGILPTGGRIDPRVNLDVV 184
Query: 178 THIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237
T + ++D+++ N + LP TLG + GV R VR EAL S+ +
Sbjct: 185 TGLYVLDSIITANPAALVSAVEHLILPSLTLGIVLSGVYTRLVRIHVAEALRSEVAVAYR 244
Query: 238 AKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297
A+G+ + RI H L+ +L+P +T++GLQF LLGG +TE F PG+GS V+ I D
Sbjct: 245 ARGLRESRIAVHMLRISLIPTITMMGLQFAILLGGAVLTEATFSWPGLGSLLVERISYRD 304
Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ + VT +A + ++LIVDI+YA+++PRVRY
Sbjct: 305 YSTIQGVTVFFAFMVGLVSLIVDIIYAIVNPRVRY 339
>pir||D75202 dipeptide abc transporter, dipeptide-binding protein PAB0092 -
Pyrococcus abyssi (strain Orsay)
>gi|5457576|emb|CAB49067.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 310
Score = 192 bits (482), Expect = 6e-48
Identities = 116/332 (34%), Positives = 180/332 (53%), Gaps = 34/332 (10%)
Query: 5 KKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEP 64
K+++I++IL+ + I V++ F I + IP DPA+ + GE AT+E + + LD P
Sbjct: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPAR-YLLGEFATEEQLAKFRHQLGLDRP 61
Query: 65 WYDQYVF----LIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
Y QY+ +++G +++ PV I R T +L + A+ + G+ G
Sbjct: 62 LYIQYIDWMSKVLRGDFGTSLVQ---GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFG 118
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
+++A+ +++ D +V A+ +S P FWLG L++ IF VK + I+G +
Sbjct: 119 MLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW------- 171
Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
+HL LP TLG + V AR R + L+ L DY+ +AKG
Sbjct: 172 ---------------RHLI---LPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKG 213
Query: 241 VP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299
+P +M +Y+HAL+NAL+P+VT + LQ L GG +TETVFG PGMG+ V AI D+P
Sbjct: 214 LPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYP 273
Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
VV A+ I ++ V N + DI Y +IDPRVR
Sbjct: 274 VVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305
>pir||B70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960089|emb|CAA17987.1|
(AL022121) dppB [Mycobacterium tuberculosis]
Length = 308
Score = 191 bits (480), Expect = 1e-47
Identities = 100/327 (30%), Positives = 171/327 (51%), Gaps = 24/327 (7%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
++ RR+ +P +G TL+++ + + +P DP A AG T ++ YHLD+P+
Sbjct: 4 YVARRVAVMVPVFLGATLLIYGMVFLLPGDPVAALAGDRPLTPAVAAQLRSHYHLDDPFL 63
Query: 67 DQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126
QY+ + G++ + + PV + FPVT +LA+IA ++GI G+I+ L+
Sbjct: 64 VQYLRYLGGILHGDLGRAYSGLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLR 123
Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDAL 186
+ D+ V + L+ ++ P F LG+L ++F V+ + P+T
Sbjct: 124 QGGIFDSAVLVTGLVIIAIPIFVLGFLAQFLFGVQLEIA----------PVTVGE----- 168
Query: 187 LRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI 246
+ + R LPG LG + R R++ +DYV+ AKG+ + R+
Sbjct: 169 --------RASVGRLLLPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLSRPRV 220
Query: 247 YR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVT 305
H L+N+L+P+VT LG G L+GG +TE +F + G+G QA+ + P VV++
Sbjct: 221 VTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQAVTRQETPTVVSIV 280
Query: 306 FIYAIIYVTINLIVDILYAVIDPRVRY 332
+ +IY+ NL+VD+LYA +DPR+RY
Sbjct: 281 TVLVLIYLITNLLVDLLYAALDPRIRY 307
>emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 330
Score = 189 bits (474), Expect = 6e-47
Identities = 111/326 (34%), Positives = 170/326 (52%), Gaps = 29/326 (8%)
Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67
+++R+LT + + + F + ++ DP K + AT E +++ LD+ +
Sbjct: 29 VLKRLLTALFVLFCTATVAFFLV-RLSGDPVKILLPPD-ATAEQERVLRHSLGLDQSLFA 86
Query: 68 QYVFLIKGLITNTIIDPRT-SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126
QY+ ++GL+ D PV + R P T +LA A L++ IP GI++A++
Sbjct: 87 QYLDYLRGLLHLDFGDSLVYGQPVSEILADRLPATIELAAAALAVTLVVAIPAGIVAAMR 146
Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDAL 186
R D V LLG STP FW+G L++ +F V R +G
Sbjct: 147 RGRGTDKTVMTGVLLGQSTPPFWVGILLILVFAVWLRALPASGYGT-------------- 192
Query: 187 LRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV-PKMR 245
LA LP TL + V AR +R+S ++ LSSD+++ +AKG P
Sbjct: 193 -----------LANLVLPAVTLAVYSVAVVARLLRSSLIDVLSSDHIRSARAKGFGPLQV 241
Query: 246 IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVT 305
+ RH L+NA +P+VTV+GL+ G LLGG +TE VF PG+G V+AI N DFP+V A
Sbjct: 242 VLRHGLRNASLPVVTVVGLEVGNLLGGAILTERVFSWPGVGQLTVEAISNRDFPLVQATV 301
Query: 306 FIYAIIYVTINLIVDILYAVIDPRVR 331
+A +V +NL+VD+ Y+ +DPRVR
Sbjct: 302 LFFAATFVVVNLLVDLSYSFLDPRVR 327
>sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB
>gi|98272|pir||S16648 dipeptide transport system
permease protein dppB - Bacillus subtilis
>gi|580850|emb|CAA40003.1| (X56678) dciAB [Bacillus
subtilis] >gi|2632014|emb|CAA05573.1| (AJ002571) DppB
[Bacillus subtilis] >gi|2633647|emb|CAB13150.1| (Z99110)
dipeptide ABC transporter (permease) [Bacillus subtilis]
Length = 308
Score = 188 bits (472), Expect = 1e-46
Identities = 111/334 (33%), Positives = 182/334 (54%), Gaps = 37/334 (11%)
Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIEL-IKKMYHLD 62
+ +++I+R TI+ +T + F++ IP P E+ T EA++ ++ YHLD
Sbjct: 1 MARYMIKRFWAMAATILVITTLTFVLMKVIPGSPFNE----ERGTNEAVQKNLEAYYHLD 56
Query: 63 EPWYDQYVFLIKGLIT----NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIP 118
+P QY+F +K +IT +I P S M + G FPV+F+L + A +I G+
Sbjct: 57 DPLIFQYIFYLKSIITFDFGPSIKKPSDSVNDMLERG--FPVSFELGMTAIVIAVISGLV 114
Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPIT 178
LG+I+AL+RN ++D A+LG+S P F L L++ F V +L FP
Sbjct: 115 LGVIAALRRNGFLDYAAMSLAVLGISIPNFILATLLIQQFAVNLKL--------FPAATW 166
Query: 179 HIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKA 238
P+ H+ LP L M + AR R+S +E L+ DY++ KA
Sbjct: 167 TSPI--------------HMV---LPTAALAVGPMAIIARLTRSSMVEVLTQDYIRTAKA 209
Query: 239 KGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297
KG+ +I +HAL+NAL+P++TVLG +L G+ + E +F +PGMG Y V++I D
Sbjct: 210 KGLSPFKIIVKHALRNALMPVITVLGTLVASILTGSFVIEKIFAIPGMGKYFVESINQRD 269
Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+PV++ T Y++I + + +VD+ Y ++DPR++
Sbjct: 270 YPVIMGTTVFYSVILIIMLFLVDLAYGLLDPRIK 303
>pir||B72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981045|gb|AAD35617.1|AE001728_18 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 321
Score = 187 bits (470), Expect = 2e-46
Identities = 114/329 (34%), Positives = 178/329 (53%), Gaps = 13/329 (3%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
K++ RR++ IP +I ++ IVF+I P D + +++ +E ++K LD+PW
Sbjct: 3 KYIARRLIIMIPELIIISFIVFIIMEAAPGDFLDMYRLDPSVSQQFLEKMEKELGLDKPW 62
Query: 66 YDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124
QY +K ++ PV T I +R T L++ + F ++GI +G+ SA
Sbjct: 63 IVQYGIWLKNVLKGDFGYSFYYRRPVSTLIWERVFATVILSVSSLAFEWLLGIIVGVFSA 122
Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMID 184
LK+ S D ++ + A G++ P F+L L+LY+ K IAG+ + H M
Sbjct: 123 LKKYSIWDKILTVVAFSGIALPGFFLAILLLYMA-AKTGWFPIAGMVS----VNHNQMT- 176
Query: 185 ALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP-K 243
+E FK + LP LGF G R++R S L+ L+ DYV+F +AKG+P +
Sbjct: 177 -----TWEKFKDIASHLVLPTIALGFGGFASLMRYMRGSLLDVLNEDYVEFARAKGMPER 231
Query: 244 MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVA 303
+ IY+HAL+NA+ P++T LG +LGG I E +F PGMG QA+ D +V+A
Sbjct: 232 VVIYKHALRNAINPMITFLGFSISNVLGGAVIIENIFAWPGMGRLIYQALLQQDIYIVMA 291
Query: 304 VTFIYAIIYVTINLIVDILYAVIDPRVRY 332
I AI+ V NL+ D+L A +DPRVR+
Sbjct: 292 SAVISAIMLVIGNLVADVLLAAVDPRVRF 320
>gi|10954943 Probable accD [Agrobacterium tumefaciens]
>gi|6498296|dbj|BAA87748.1| (AB016260) Probable accD
[Agrobacterium tumefaciens]
Length = 308
Score = 187 bits (469), Expect = 2e-46
Identities = 116/327 (35%), Positives = 174/327 (52%), Gaps = 29/327 (8%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F++ R++ I ++ VF+I ++ DPA+A G E AT EA+ + + LD
Sbjct: 4 FILARLVRAIIVMMLTVTFVFIIL-RLGGDPARAMLG-ENATPEALAAFRTAWGLDRSIP 61
Query: 67 DQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
+Q+ ++L L + + V T I +R P T L I AF +++GIP GII+A+
Sbjct: 62 EQFLIYLASALRGDFGVSAADGREVFTVIAERIPKTLTLTISAFVLSILVGIPAGIIAAV 121
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185
+R+S D V A+LG S P F LG ++++F V +R+ +G + I
Sbjct: 122 RRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTWQHAI-------- 173
Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMR 245
LP T G + ARF R++ +E L Y+ +A G+PK
Sbjct: 174 -----------------LPVATFGLVNAAAIARFARSALIEVLEQPYIAAARADGIPKWE 216
Query: 246 IY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304
+ RHAL NA +P+VT+LG GLLGG+ I ETVF PG+GS V+AI D VV A+
Sbjct: 217 VVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAM 276
Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVR 331
++ VTINLIVD+LYAV++P++R
Sbjct: 277 ILLFTAFMVTINLIVDVLYAVLNPKIR 303
>sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TP
>gi|2182646|gb|AAB91869.1| (AE000098) Y4tP [Rhizobium
sp. NGR234]
Length = 313
Score = 186 bits (468), Expect = 3e-46
Identities = 105/328 (32%), Positives = 176/328 (53%), Gaps = 20/328 (6%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
+++RR+++ I + V + +FL+ P DPA AG AT++ + I++ L+EP
Sbjct: 4 YILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAG-PTATEQMVANIREELGLNEPLP 62
Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
Q+V ++ T PV+ + +R T L+++ + +G+ G+++A
Sbjct: 63 VQFVHWASDVLRGNFGASVFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAW 122
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185
+ ++D + F+ +G S P F +GY+++Y F ++ R + G + + P
Sbjct: 123 RSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSINQGVA--PWFLH 180
Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV-PKM 244
L+ LP TL + AR R S LE LS DY++ AKG P
Sbjct: 181 LI---------------LPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFA 225
Query: 245 RIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304
++ HALKNA VPI+TV+G+ F ++GG +TETVF +PG+G V AI+N D+P++ V
Sbjct: 226 MLFHHALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTV 285
Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ + +YV INL+VD+ Y +IDPR+RY
Sbjct: 286 LVLISGLYVLINLLVDLAYTLIDPRIRY 313
>gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-3) [Sulfolobus
solfataricus]
Length = 343
Score = 186 bits (467), Expect = 4e-46
Identities = 115/338 (34%), Positives = 184/338 (54%), Gaps = 10/338 (2%)
Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADP---AKAWAGGEKATKEAIELIKKMY 59
N+ F+IRRI+ T+I + ++VF++ + I +P A+ + G AT +E + K Y
Sbjct: 4 NIVFFIIRRIINAFITLILLIILVFIMIHIIAPNPLALARLYTGPH-ATYTELEQVAKQY 62
Query: 60 HLDEPWYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIP 118
LD+P Y Q + ++I L N IDP PV+T IGK P T +L I A ++IG+
Sbjct: 63 GLDQPLYIQIINYIINVLHGNFGIDPTYKVPVITLIGKYLPRTLELVIPATILSVVIGLF 122
Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLT----TIAGVPPFP 174
G I+A RN +D +VR L+ ++P F + ++ + RL T+ V P
Sbjct: 123 TGAIAASNRNKPLDYLVRGVYLVTWASPPFLIAVILQLVIAYYLRLLPPTGTVNPVLTPP 182
Query: 175 EPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQ 234
+ IT P+++A+L G++ F + LP + + G+ R R S L+ + SD+ +
Sbjct: 183 KSITPFPLLNAMLAGDWPYFSSLVHHMVLPVIAIALVSFGIVTRIARASMLDYMESDFAK 242
Query: 235 FLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293
KG+ + R+ Y L+NA +P+VT++ L FG + G + E +F GMG + QAI
Sbjct: 243 LSLMKGLSRRRVVYGVVLRNASIPLVTLIALLFGYSVAGAVVIEDIFQYHGMGYFITQAI 302
Query: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
++LD+ ++ T I I + NLI DILY V+DPRVR
Sbjct: 303 ESLDYTSILGTTIIVGIAIIIANLIADILYGVLDPRVR 340
>sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKB
>gi|628767|pir||S39595 NikB protein - Escherichia coli
>gi|404846|emb|CAA51660.1| (X73143) NikB [Escherichia
coli]
Length = 314
Score = 184 bits (463), Expect = 1e-45
Identities = 112/330 (33%), Positives = 174/330 (51%), Gaps = 29/330 (8%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA--GGEKATKEAIELIKKMYHLDE 63
++++RR L IP ++ ++I+FLI DPA + T E + + M LD+
Sbjct: 3 RYVLRRFLLLIPMVLAASVIIFLIVRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQ 62
Query: 64 PWYDQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
P Y QY +L K L + I + PV+ D+ P T +LA A IL+ +PLGI
Sbjct: 63 PLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIW 122
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+A R+ D VR A LGVS P FWL +L++ F V ++
Sbjct: 123 AARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV------------------YLQW 164
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV- 241
+ A+ G + QH+ LP ++ F+ + + AR +R S L+ +V + + +G+
Sbjct: 165 LPAMGYGGW----QHII---LPAVSIAFMSLAINARLLRPSMLDVAGQRHVTWARLRGLN 217
Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
K RH L+NA +P++T +G+ G L+GGT I E +F PG+G YAV AI N D+PV+
Sbjct: 218 DKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVI 277
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
T + +++V NLIVD+L A +DPR+R
Sbjct: 278 QCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
>dbj|BAB04287.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 314
Score = 184 bits (463), Expect = 1e-45
Identities = 111/328 (33%), Positives = 170/328 (50%), Gaps = 29/328 (8%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAW--AGGEKATKEAIELIKKMYHLDEP 64
++ +RI IP ++ I+F+ P DPA+A+ A T+E + + + LD+P
Sbjct: 4 YIAKRIFAVIPIVLFAIFIMFVFIRLSPVDPAEAYLTAANIHPTEELLAEKRHEFGLDQP 63
Query: 65 WYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
QYV ++K + T+ PV ++ R P T QLA+ + F ++I IPLG +S
Sbjct: 64 MAVQYVQTIVKVFQLDFGHSYVTNQPVWDEVTARMPATLQLAVSSIFLAVLISIPLGFLS 123
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183
A+ +NS ID R+ + LG S P FWLGYL+++ F VK L + G
Sbjct: 124 AIYKNSLIDRFSRLLSYLGASIPQFWLGYLLIFFFSVKLNLFPVEG-------------- 169
Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV-P 242
RG++ A LP TL + + R +R S LE + YV + + +G+
Sbjct: 170 ----RGSW-------AHLVLPTVTLSLALIAIYTRLLRASVLEQMQESYVLYARTRGIKE 218
Query: 243 KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
K+ + +H LK A+ P++T LG+ G LL GT I E VF PG G Y V AI N D PV+
Sbjct: 219 KVIMVKHVLKLAISPVITGLGMNVGKLLTGTIIVEQVFSWPGFGRYFVDAIFNRDIPVIQ 278
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRV 330
+ A +++ NLIVD++ +DPR+
Sbjct: 279 CYVLLAACLFIVCNLIVDLVQLAMDPRI 306
>pir||F72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981014|gb|AAD35588.1|AE001726_22 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 345
Score = 183 bits (460), Expect = 2e-45
Identities = 118/340 (34%), Positives = 181/340 (52%), Gaps = 15/340 (4%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGG----EKATKEAIELIKKMYHLD 62
++IRR+L ++GVT IVF + + D A +K T E ++ +K+ Y L+
Sbjct: 4 YIIRRLLLLPLILLGVTFIVFSMIQSLGPDKLLAAYVNPNMLDKLTPEQMDALKEKYGLN 63
Query: 63 EPWYDQYVFLIKGLITNTIIDPRTSN-PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121
+ + +YV + + + PV + +R P T +LA+ A F ++ +GI LG+
Sbjct: 64 DFFVVRYVKWLANTLRGDLGWSLVGKEPVKDALLRRLPYTVELALYAIFPVVFVGIWLGV 123
Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181
+A+ R ++D +RIFA++G S P F G L+L IF+ + + E + P
Sbjct: 124 KAAVHRGKFLDHFIRIFAVVGWSFPDFVFGLLVLMIFYSILNWLPPGNLSMWAEEVIKSP 183
Query: 182 ---------MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDY 232
IDALL G ++F L P TL +L R R+S LE L+ +Y
Sbjct: 184 EFHRYTKLITIDALLNGRLDIFWDGLKHLIGPIITLSWLWWAYLLRITRSSMLEVLNKEY 243
Query: 233 VQFLKAKGVPK-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQ 291
V+ +AKG+P+ + I +HA +NAL+P+ TV G GL GT I ETVF G+GS+ Q
Sbjct: 244 VRTARAKGLPEDVVINKHARRNALIPVTTVAGGMVIGLFSGTVIVETVFNRTGVGSFTAQ 303
Query: 292 AIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
A LD+ V+A ++ I V NLI+DILYA+IDPR+R
Sbjct: 304 AALQLDYASVMASALFFSTILVVGNLIIDILYALIDPRIR 343
>pir||S47696 nickel transport system permease protein nikB - Escherichia coli
>gi|466613|gb|AAB18452.1| (U00039) nikB [Escherichia
coli] >gi|1789888|gb|AAC76502.1| (AE000423) transport of
nickel, membrane protein [Escherichia coli K12]
Length = 314
Score = 183 bits (459), Expect = 3e-45
Identities = 111/330 (33%), Positives = 174/330 (52%), Gaps = 29/330 (8%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA--GGEKATKEAIELIKKMYHLDE 63
++++RR L IP ++ ++I+FL+ DPA + T E + + M LD+
Sbjct: 3 RYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQ 62
Query: 64 PWYDQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
P Y QY +L K L + I + PV+ D+ P T +LA A IL+ +PLGI
Sbjct: 63 PLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIW 122
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+A R+ D VR A LGVS P FWL +L++ F V ++
Sbjct: 123 AARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV------------------YLQW 164
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV- 241
+ A+ G + QH+ LP ++ F+ + + AR +R S L+ +V + + +G+
Sbjct: 165 LPAMGYGGW----QHII---LPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLN 217
Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
K RH L+NA +P++T +G+ G L+GGT I E +F PG+G YAV AI N D+PV+
Sbjct: 218 DKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVI 277
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
T + +++V NLIVD+L A +DPR+R
Sbjct: 278 QCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
>emb|CAC05748.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 307
Score = 181 bits (455), Expect = 9e-45
Identities = 102/330 (30%), Positives = 165/330 (49%), Gaps = 29/330 (8%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
++++RR+L IP IG TL++FL+ + DP G + ++ + LD+P
Sbjct: 3 RYVVRRLLQMIPVFIGATLLIFLMV-NVMGDPIAGLCGDRECDPATAAQLRHEFGLDQPV 61
Query: 66 YDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
+ QY + + T PV +G FPVT +L I+A F +++GI LG+++ L
Sbjct: 62 WQQYATYMGNVFTGDFGTAFNGQPVTELMGTAFPVTIRLTIVAILFEIVVGIILGVLTGL 121
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLT--TIAGVPPFPEPITHIPMI 183
+R +DT V + L+ +S P F G L+ + VK+ ++ F E I
Sbjct: 122 RRGRPVDTGVLLLTLVVISVPTFVTGLLLQLLLGVKWGWIDPAVSSEAAFGELI------ 175
Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243
+PG L + + R R S E SDYV+ AKG+P+
Sbjct: 176 -------------------VPGLVLASVSLAYVTRLTRTSIAENRRSDYVRTAIAKGLPR 216
Query: 244 MRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
R+ RH L+N+L+P+VT +G G L+GG +TE +F + G+G Q I + VV
Sbjct: 217 HRVITRHLLRNSLIPVVTFIGTDIGALMGGAIVTERIFNIHGVGYQLYQGILRQNTQTVV 276
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ ++++ NL+VD+LYAV+DPR+RY
Sbjct: 277 GFVTVLVLVFLVANLVVDLLYAVLDPRIRY 306
>dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [Ochrobactrum
anthropi]
Length = 313
Score = 178 bits (447), Expect = 8e-44
Identities = 100/331 (30%), Positives = 178/331 (53%), Gaps = 31/331 (9%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH---LD 62
+++I R+L IP ++GVT+ VFL + +P DP + G E + +YH +D
Sbjct: 5 RYVISRLLHAIPVVLGVTICVFLTIHLVPGDPVRIMMHGRIGDDE----VAAIYHQLGMD 60
Query: 63 EPWYDQYVFLIKGLITNTIIDPRTSNPVMTDI--GKRFPVTFQLAIIAFFFILIIGIPLG 120
P QY ++ +T + +TD+ K +P LA +LI IPLG
Sbjct: 61 RPLLVQYFDFVRHALTGNLGTSIVQKAPVTDLVLEKLWPTLLLLAFSTLISVLI-AIPLG 119
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
++++ RN W D +R+ + +G + P++W+G L++ +F + I+G+
Sbjct: 120 LVASFYRNRWPDHAIRLVSSIGFAMPSYWIGLLLILLFGLWLGWFPISGIG--------- 170
Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
+G+ E+ L +LP T+ V + +R+S L+ L+S+Y++ +AKG
Sbjct: 171 -------QGHLEI----LHHLFLPALTISLFLGPVLIQSLRSSMLDVLTSEYIEVARAKG 219
Query: 241 VPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299
V + RI +H ++NAL+P++TVL + LL G I E VFGLPG+GS V+++ D+P
Sbjct: 220 VSEWRILTKHVMRNALIPVITVLAINISWLLSGAVIVEYVFGLPGLGSLLVRSVGYRDYP 279
Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRV 330
++ ++ ++ ++ V INL+ D+ Y ++D RV
Sbjct: 280 LIQGLSLVFGVLVVVINLLADLSYMLVDRRV 310
>gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T45531 agaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665707|gb|AAB88467.1| (AF242881) agaB
[Agrobacterium tumefaciens]
Length = 323
Score = 177 bits (445), Expect = 1e-43
Identities = 108/337 (32%), Positives = 178/337 (52%), Gaps = 24/337 (7%)
Query: 1 MANLKKFLIR---RILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEK-ATKEAIELIK 56
M L F+I R++T + + + +VF I Y +P DP G E + EA+ ++
Sbjct: 1 METLSTFVITLGSRLITALVQLWVIATLVFSIMYIMPGDPVLLLLGPESNPSPEAVAAMR 60
Query: 57 KMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIG 116
LD+P QY+ + + + + V+ I P T +LA A IIG
Sbjct: 61 HQLGLDQPVMSQYLKWLGNAASGDLGNSVDGVSVVEYITASIPKTMELATAAIILASIIG 120
Query: 117 IPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEP 176
+P+GI +AL+R ++D+++ + LG+S P + LG L++ +F +K +G
Sbjct: 121 VPIGIAAALRRGRFLDSLLTSLSTLGISLPVYILGSLLILMFSLKLGWLPSSGYTDISRS 180
Query: 177 ITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVT-ARFVRNSFLEALSSDYVQF 235
+ H + LP TLG LG+ + AR R+S LE L D+V+
Sbjct: 181 VF-----------------LHFQKLTLPAVTLG-LGLAASIARMTRSSMLEILGRDFVRS 222
Query: 236 LKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294
L+A+G+ + R I+ H L+NA +PIVT++GLQ G L+GGT + E ++ PG+ + V A+
Sbjct: 223 LRARGMRERRVIWVHVLRNAAIPIVTIIGLQLGNLMGGTVLVEALYNWPGLSTLLVTAVS 282
Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
N ++P+V A +++ INL VDILY+++DPR+R
Sbjct: 283 NRNYPLVQGSILTIAALFILINLCVDILYSLLDPRIR 319
>pir||T34758 oligopeptide transport system integral membrane protein -
Streptomyces coelicolor >gi|3402245|emb|CAA20181.1|
(AL031184) oligopeptide transport system integral
membrane protein [Streptomyces coelicolor A3(2)]
Length = 332
Score = 177 bits (444), Expect = 2e-43
Identities = 119/350 (34%), Positives = 177/350 (50%), Gaps = 48/350 (13%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAG--------GEKATKEAIELIKKM 58
+LIRR+ ++ + L+VF I + +P WAG G++A A+E +++
Sbjct: 4 YLIRRLFAAAVMLVVIILVVFCIFFLVPK-----WAGVDIALNFVGKQADPAAVEGVREK 58
Query: 59 YHLDEPWYDQYVFLIKGLITNTIIDP----------------RTSNPVMTDIGKRFPVTF 102
L +P + Q KG+ +T V + +RFPVT
Sbjct: 59 LGLGDPVFVQAWEFFKGIFAGRTYAAGGDVTHCAAPCFGYSFKTEQSVWPVLTERFPVTL 118
Query: 103 QLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKY 162
LA+ A LI G+ G++SALKR + D + AL GVS P ++ G L L IF Y
Sbjct: 119 ALALGAAVLWLIFGVAAGVLSALKRGTLWDRGAMVVALAGVSLPIYFTGLLSLAIF--SY 176
Query: 163 RLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRN 222
L I G +P+ D+L L LP TL FL + AR R
Sbjct: 177 GLGWIDG--------EFVPLEDSLTGW--------LGGMILPWITLAFLYAAMYARITRA 220
Query: 223 SFLEALSSDYVQFLKAKGVPK-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFG 281
+ LE L DY++ +AKG+ + + I +HA+++ L P++T+LG+ G L+GG +TET F
Sbjct: 221 TMLEILGEDYIRTARAKGLKEQVVISKHAMRSTLTPLLTMLGMDLGALMGGAILTETTFS 280
Query: 282 LPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
LPG+G + AI+N D P ++ V I ++ + NL+VDILYAVIDPRVR
Sbjct: 281 LPGLGQKVLDAIKNHDLPFILGVVLITSLAVLIANLVVDILYAVIDPRVR 330
>pir||E70343 transporter (OppBC family) - Aquifex aeolicus
>gi|2983140|gb|AAC06743.1| (AE000692) transporter (OppBC
family) [Aquifex aeolicus]
Length = 327
Score = 176 bits (443), Expect = 2e-43
Identities = 116/329 (35%), Positives = 172/329 (52%), Gaps = 16/329 (4%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
KF++ R+L IPT++GVT + FLI P D + + E IE +K +Y LD+P
Sbjct: 3 KFILFRVLQAIPTLLGVTFLSFLIIKLAPGDYLDQLRLNPQISPETIERLKHLYGLDKPL 62
Query: 66 YDQYVFLIKG-LITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124
QY +K L + + PV I +R P T L++ + F ++ IPLG ++A
Sbjct: 63 LVQYFLWLKNALFFDLGYSFQYHAPVAELILERIPNTLLLSVSSALFAWLLSIPLGTLAA 122
Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGV--PPFPEPITHIPM 182
K NS D V F+ +S P+F+L +L+L+ F K + + G+ P F + +
Sbjct: 123 FKENSLFDRFVVGFSYTFMSVPSFFLAFLLLF-FASKTGILPVGGMQSPNFEQLSIPEKV 181
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
+D L +HL +P TLG + + R VR+S LE LSS V LKAKGV
Sbjct: 182 LDIL---------KHLI---IPSLTLGLVSLASLTRLVRSSVLEILSSPMVTMLKAKGVG 229
Query: 243 KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
+ RH LKNA+ P T+LG + L+ G + E + G PGMG + A+ + D +V+
Sbjct: 230 TFTLVRHVLKNAMNPFTTLLGYEIASLISGAALIEIIVGWPGMGMLMLNAVLSQDLFLVM 289
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+I I+ + NLI D+L A IDPRVR
Sbjct: 290 GGLYIGTIMLLVGNLIADLLLAYIDPRVR 318
>sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442405|pir||H69668 oligopeptide transport system
permease protein oppB - Bacillus subtilis
>gi|2633498|emb|CAB13001.1| (Z99110) oligopeptide ABC
transporter (permease) [Bacillus subtilis]
Length = 311
Score = 175 bits (438), Expect = 9e-43
Identities = 105/330 (31%), Positives = 170/330 (50%), Gaps = 33/330 (10%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
K++ RR++ I T+ + + F + P P ++G +K E + Y LD+P
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGP---FSGEKKLPPEIEANLNAHYGLDKPL 59
Query: 66 YDQYVFLIKGLITNTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
+ QYV +K + P V I FPV+F L A L +G+ G+I
Sbjct: 60 FVQYVSYLKS-VAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVI 118
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+AL N W D V I + G+S P+F + ++ Y+F +K L +AG +
Sbjct: 119 AALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSW--------- 169
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
A +LP L + M AR R+S +E L+SDY++ KAKG+
Sbjct: 170 ----------------AYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLS 213
Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ + RHA++NAL+P+VT +G +L G+ I ET+FG+PG+G++ V +I N D+ V+
Sbjct: 214 RPAVTVRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVI 273
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ VT +++I + LIVD+LY +IDPR++
Sbjct: 274 MGVTVFFSVILLLCVLIVDVLYGIIDPRIK 303
>sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPB
>gi|2126889|pir||I40546 oligopeptide ABC transporter
(permease) appB - Bacillus subtilis
>gi|677946|gb|AAA62359.1| (U20909) AppB [Bacillus
subtilis] >gi|2633493|emb|CAB12996.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 317
Score = 174 bits (437), Expect = 1e-42
Identities = 103/332 (31%), Positives = 173/332 (52%), Gaps = 24/332 (7%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
++IRR L IP ++G+T++ F+I P DP + + + + I+K Y L++P Y
Sbjct: 4 YIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMDPKISQADREQFIEK-YGLNDPQY 62
Query: 67 DQYVF----LIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
QY+ +++G +I+ R PV I R P T L +++ L+I IP G++
Sbjct: 63 VQYLKWLGNMVQGDFGTSIV--RKGTPVSELIMARLPNTLLLMLVSTILALMISIPFGVL 120
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
SA + S ID + + +G++ P FW G +++ + V GV
Sbjct: 121 SAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGGV------------ 168
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
L F +F + LP F L M R+ R++ L+ L+ DY++ +AKG
Sbjct: 169 --ETLNTEFNIF-DRIHHLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRTARAKGFK 225
Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAV-QAIQNLDFPV 300
+ R+ ++H L+NAL+P++T+ GL +GG+ + E +F PG+G V A Q +
Sbjct: 226 ENRVLFKHGLRNALLPVITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDSAFQRTIIRI 285
Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
++A+T I A++ V NLI DILYA++DPR+ Y
Sbjct: 286 IMAMTVISAVLVVVGNLIADILYAIVDPRIEY 317
>gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T45537 moaB
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665713|gb|AAB88473.1| (AF242881) moaB
[Agrobacterium tumefaciens]
Length = 313
Score = 173 bits (435), Expect = 2e-42
Identities = 103/331 (31%), Positives = 179/331 (53%), Gaps = 27/331 (8%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
+L +R+ + T++ V ++FL+ +P DP G ++A+ E++ +++ LD+P
Sbjct: 4 YLAKRLCFAVVTLLSVLTLIFLMVRVLPGDPVLMILG-DQASPESVAALRQRLGLDQPIG 62
Query: 67 DQYV-FL---IKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
QYV FL +KG + N+++ T PV ++ P T +L + LI+G+P G+
Sbjct: 63 LQYVQFLGSAVKGDLGNSMV---TGRPVTEEVMSVLPYTLELTFASLVVGLILGVPTGVW 119
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+A+KR+ D ++R+ +L+G+S P F ++L +F + R P+
Sbjct: 120 AAVKRSKLPDYILRLISLIGLSLPGFVSAIVLLIVFAINLRW---------------FPV 164
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV- 241
I A G + + + LP +L + M R R++ LE L+ D+V+ +AKG
Sbjct: 165 ISA---GTGDGIVNRVWQMTLPVISLALIMMAYITRVTRSAMLEVLNQDFVRTARAKGAR 221
Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
P + I+RHAL N L+PI TV+GL G L+G + +TE VF PG+G + A+ D+ ++
Sbjct: 222 PSVVIWRHALGNCLIPISTVVGLYLGILIGNSVLTEIVFSRPGLGKLILTALSQRDYTLL 281
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ +Y +I V +NL D+ Y + DPRV+Y
Sbjct: 282 QGMVVVYTLIVVIVNLATDLTYGLFDPRVQY 312
>pir||T03433 probable transport protein accD - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153180|gb|AAC17200.1| (AF010180) AccD
[Agrobacterium tumefaciens]
Length = 306
Score = 173 bits (435), Expect = 2e-42
Identities = 114/327 (34%), Positives = 170/327 (51%), Gaps = 31/327 (9%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F++ R++ I ++ VF+I ++ DPA+A G E AT EA+ + + LD
Sbjct: 4 FILARLVRAIIVMMLTVTFVFIIL-RLGGDPARAMLG-ENATPEALAAFRTAWGLDRSIP 61
Query: 67 DQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
+Q+ ++L L + + V T I +R P T L I AF +++GIP GII+A+
Sbjct: 62 EQFLIYLASALRGDFGVSAADGREVFTVISERIPKTLTLTISAFVLSILVGIPAGIIAAV 121
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185
+R+S D V A+LG S P F LG ++++F V +R+ +G + I
Sbjct: 122 RRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTWQHAI-------- 173
Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMR 245
LP T G + A R +E L Y+ +A G+PK
Sbjct: 174 -----------------LPVATFGLVNAAAIALPFR--VIEVLEQPYIAAARADGIPKWE 214
Query: 246 IY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304
+ RHAL NA +P+VT+LG GLLGG+ I ETVF PG+GS V+AI D VV A+
Sbjct: 215 VVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAM 274
Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVR 331
++ VTINLIVD+LYAV++P++R
Sbjct: 275 ILLFTAFMVTINLIVDVLYAVLNPKIR 301
>pir||B38447 oligopeptide permease oppB homolog - Bacillus subtilis
>gi|580897|emb|CAA39788.1| (X56347) OppB [Bacillus
subtilis]
Length = 311
Score = 173 bits (434), Expect = 3e-42
Identities = 105/330 (31%), Positives = 170/330 (50%), Gaps = 33/330 (10%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
K++ RR++ I T+ + + F + P P ++G +K E + Y LD+P
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGP---FSGEKKLPPEIEANLNAHYGLDKPL 59
Query: 66 YDQYVFLIKGLITNTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
+ QYV +K + P V I FPV+F L A L +G+ G+I
Sbjct: 60 FVQYVSYLKS-VAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALGLGVLFGVI 118
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+AL N W D V I + G+S P+F + ++ Y+F +K L +AG +
Sbjct: 119 AALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSW--------- 169
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
A +LP L + M AR R+S +E L+SDY++ KAKG+
Sbjct: 170 ----------------AYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLS 213
Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ + RHA++NAL+P+VT +G +L G+ I ET+FG+PG+G++ V +I N D+ V+
Sbjct: 214 RPALTVRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVI 273
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ VT +++I + LIVD+LY +IDPR++
Sbjct: 274 MGVTVFFSVILLLCVLIVDVLYGIIDPRIK 303
>dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 172 bits (432), Expect = 5e-42
Identities = 101/328 (30%), Positives = 176/328 (52%), Gaps = 29/328 (8%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F+ +R+ IP + ++ IVF + + + +P A E A++E I+ + LD+P+
Sbjct: 4 FVFKRLAEMIPVLFIISFIVFALVF-VAGNPV-ALMLPEDASQEDIDQLTASLGLDQPFL 61
Query: 67 DQYVFLIKGLITNTIIDP-RTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
QY + L+ + R + + + +R P T +LA+ A + + IPLG+ SA
Sbjct: 62 VQYGKYLLNLVQGDFGESFRYNTSALPLVLERLPATLELAVAALVLAVAMAIPLGVWSAT 121
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185
K++S +D + +++G + P FWLG +++ IF V ++G
Sbjct: 122 KQHSPVDLLAAGGSVIGKAMPNFWLGIMLILIFSVMLGWFPVSG---------------- 165
Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK-M 244
RG L LP TL R +R+S +E L+ DY++ ++KG+ + M
Sbjct: 166 --RGT-------LGHLVLPAMTLATGIAAEITRLLRSSMIEILNQDYIRTARSKGIREGM 216
Query: 245 RIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304
+Y+HA +N+L+P+VT++ LQ ++GGT ITETVF PG+G +QA+ D +V A
Sbjct: 217 VVYKHAFRNSLIPLVTIVALQTSTVVGGTLITETVFSWPGLGQLLIQAVHTRDMAIVQAC 276
Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVRY 332
F+ AI+ + +NL+ D+LY ++DPR++Y
Sbjct: 277 VFVIAILVIFMNLVADVLYRLLDPRIKY 304
>pir||C82242 oligopeptide ABC transporter, permease protein VC1092 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655561|gb|AAF94251.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 306
Score = 172 bits (431), Expect = 6e-42
Identities = 106/333 (31%), Positives = 173/333 (51%), Gaps = 35/333 (10%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
KF+ +RI IPT++ + I F + P +P ++ E + I Y LD+P
Sbjct: 3 KFIAKRIFEAIPTMLVLITISFFLMRYAPGNP---FSSERPLPPEVMANINAKYGLDKPV 59
Query: 66 YDQYVFLIKGLITNTI-----IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
+QY+ + ++ T N + I PV+ ++ + AF F +I+G+ +G
Sbjct: 60 SEQYLTYLTNIVQGDFGPSFKYKDYTVNEL---IASALPVSVKIGLAAFVFTVIMGVTVG 116
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
I+ALK+N+WID + A+LGV P+F L +++YIF +++ L G
Sbjct: 117 TIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQD-------- 168
Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
G FE LP + L + AR R S +E L+S++++ +AKG
Sbjct: 169 --------GGFEYMA-------LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKG 213
Query: 241 VPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299
+ I +HALK AL+P+V+ +G F G++ G+ + ET+FGLPG+G V A N D+
Sbjct: 214 LSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYS 273
Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+V+ VT + +++ N IVDIL A IDP++RY
Sbjct: 274 LVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306
>emb|CAC11408.1| (AL445063) dipeptide transport system permease protein (DPPB)
related protein [Thermoplasma acidophilum]
Length = 343
Score = 171 bits (429), Expect = 1e-41
Identities = 106/334 (31%), Positives = 174/334 (51%), Gaps = 9/334 (2%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADP---AKAWAGGEKATKEAIELIKKMYHLDE 63
F+IRR + I T++ + + +F + + I +P A+ +AG A++ + I+K Y L+
Sbjct: 8 FIIRRAIYAIFTLLILIVFIFTLIHIIAPNPLALARLYAGNPHASQSELIGIEKKYGLNL 67
Query: 64 PWYDQYVFLIKGL-ITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
P YDQ + IK + I N D PV+ IG+ P+T + + +IIG+ G
Sbjct: 68 PIYDQVINYIKDVFIGNLGYDYLHDQPVLKLIGEYLPITLEFVLTGIVLSVIIGLFTGAY 127
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLG-YLMLYIFFVKYRLTTIAGVPPFPEPITHI- 180
+A +R D ++ L S P F L L LYI + L V P +P ++
Sbjct: 128 AAARRRKPADYTIKGLYLATWSMPTFLLAAVLQLYIAYDLKLLPATGMVNPTLKPPPNVL 187
Query: 181 --PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKA 238
P+++A+ ++ + LP ++ L GV R R++ L+ + DY +
Sbjct: 188 AFPLLNAIYAHDWVYASSVIHHMILPTLSVALLSFGVITRLTRSTMLDIMDMDYFRLTIM 247
Query: 239 KGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297
KG+P+ + +Y AL+NA +P+VT + L F +GG + E +F GMG Y VQA+ NLD
Sbjct: 248 KGIPRRKAVYGVALRNAAIPLVTYIVLAFAYAMGGAVVIEDIFSYHGMGYYIVQAVYNLD 307
Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+P ++ T I AI + NL+ D+LY ++DPRVR
Sbjct: 308 YPGILGTTIIIAIAVIVANLVADVLYGILDPRVR 341
>dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 315
Score = 169 bits (424), Expect = 4e-41
Identities = 100/330 (30%), Positives = 169/330 (50%), Gaps = 29/330 (8%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEK--ATKEAIELIKKMYHLDE 63
+ IRR+L ++ VT + FL P DP ++ ++E +E +++ ++
Sbjct: 3 RIFIRRLLEVALFVLFVTFVSFLFVRLAPGDPVLTILNVDELSVSQEEVETLREDMGFNK 62
Query: 64 PWYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
P QY +L+ + + + T PVM I K P T +L + + +LI+ IPLG +
Sbjct: 63 PLLVQYGHWLLDFVRLDFGVSYVTGQPVMDMIMKGLPATLELTVGSLIVMLIVSIPLGSL 122
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+AL RN WID + RI A+LG + P+FWLG + + +F V+ G F I
Sbjct: 123 AALYRNRWIDHLSRILAILGAAIPSFWLGLIFIDLFAVRLNWLPTMGRDGFVSLI----- 177
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
LP TLG V R +R+S L++LS ++++ +A+G+
Sbjct: 178 --------------------LPSVTLGLAISSVYVRLLRSSLLDSLSQEFIRAARARGLS 217
Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ RI+ HAL+++L P++TV G+ G L+GG + E +F PG+G V AI+ D+P++
Sbjct: 218 EKRIFVAHALRHSLPPVITVFGVSLGSLIGGVVVIEVLFAYPGIGKLVVDAIRQRDYPLI 277
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ A+I IN VD+ Y ++P ++
Sbjct: 278 QGYILVMALIVFVINTSVDLSYRYLNPEMK 307
>gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [Listeria monocytogenes]
Length = 309
Score = 168 bits (420), Expect = 1e-40
Identities = 101/332 (30%), Positives = 170/332 (50%), Gaps = 37/332 (11%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
K+ ++R+L + T+ + + F++ +P P + EK + E I + + Y L++
Sbjct: 3 KYTLKRVLYMLITLFIIASVTFVLMKFLPGTP---YRNQEKLSDEQIHMTNEKYGLNDSI 59
Query: 66 YDQYVFLIKGLITNTI-----IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
QY + GL+ + +D R PV + + QLA+ A F +I GI LG
Sbjct: 60 PVQYFNYMTGLVKGDLGVSFQLDNR---PVSEILSALIGPSVQLALEAMAFGVIFGILLG 116
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
+I+A+ +N W D A+LG S P+F ++ Y K ++ +AG F + I
Sbjct: 117 VIAAMYQNRWPDYTSTFIAILGKSVPSFVFATVLQYWLGAKLQIFPVAGWGTFADTI--- 173
Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
LP F L + ARF+R ++ +SDYV KAKG
Sbjct: 174 ----------------------LPAFALAMFPLATAARFMRTELIDVFASDYVLLAKAKG 211
Query: 241 VPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299
+ + +HA++NAL+P++TVLG L+ G+ + E ++ +PG+GS V +IQ D+P
Sbjct: 212 NSRTEVAVKHAIRNALIPLITVLGPLSVALMTGSLVIENIYSIPGIGSQFVSSIQTNDYP 271
Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
V++ T ++A++ V + L+VDILY +IDPR+R
Sbjct: 272 VIMGTTILFAVMLVFVILVVDILYGLIDPRIR 303
>pir||C70141 oligopeptide ABC transporter, permease protein (oppB-1) homolog -
Lyme disease spirochete >gi|2281460|gb|AAC46285.1|
(AF000366) oligopeptide permease homolog B [Borrelia
burgdorferi] >gi|2688245|gb|AAC66724.1| (AE001140)
oligopeptide ABC transporter, permease protein (oppB-1)
[Borrelia burgdorferi]
Length = 306
Score = 167 bits (418), Expect = 2e-40
Identities = 99/330 (30%), Positives = 175/330 (53%), Gaps = 31/330 (9%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIEL-IKKMYHLDEP 64
KF +++IL IPT++ + + F + P P + EK ++ + + YHLD+P
Sbjct: 3 KFTLKKILGIIPTLLVIIFLCFFVMRMAPGSPFDS----EKPIDPQVKARLMEKYHLDKP 58
Query: 65 WYDQYVFLIKGLITNTIIDPRTSNPVMTD---IGKRFPVTFQLAIIAFFFILIIGIPLGI 121
+Y Q + I + + P +T I FP + L +I+ L IGIP+GI
Sbjct: 59 FYIQAFYYITNALRGDL-GPSLKKKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPIGI 117
Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181
++A+ +N+++D ++ A+LG+S P F +G ++ Y F +K+ L +G IT
Sbjct: 118 LAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGLLYTSGW------ITE-- 169
Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241
RG F + LP TL + + AR +R S LE + SD+++ +AKG+
Sbjct: 170 ------RGGF-------SNLILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGL 216
Query: 242 P-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300
K + +H L+ A++P+V+ +G F ++ G+ + E +F + GMG + ++ N D+PV
Sbjct: 217 SFKKIVIKHMLRGAMLPVVSYIGPAFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPV 276
Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRV 330
++ +Y+II + LI DI+Y ++DPRV
Sbjct: 277 LMGGLLVYSIILLISILISDIIYKILDPRV 306
>pir||F72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982325|gb|AAD36812.1|AE001813_4 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 341
Score = 165 bits (413), Expect = 8e-40
Identities = 98/340 (28%), Positives = 176/340 (50%), Gaps = 40/340 (11%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPAD----------PAKAWAGGEKATKEAIELI 55
KFL++R+LT +++ V +I +++ + P + A+ + A + ++
Sbjct: 26 KFLLKRLLTIAISMVVVIVITYVLMWLAPGNFFELQRVRDAIARVTTPDDPAYQATLKGF 85
Query: 56 KKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD---IGKRFPVTFQLAIIAFFFI 112
++ Y L+ P + Q + +KG + P S+P I ++FP+TF LA+ + F
Sbjct: 86 EERYGLNNPLWKQILMYLKGAVVFKF-GPSFSDPARNIEDLIKEKFPITFTLALSSILFA 144
Query: 113 LIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPP 172
L++G+PLGI++ALK+N+WID +++GV+ P++ + ++ IF + +G
Sbjct: 145 LVVGVPLGILAALKKNTWIDYTAMTVSVIGVAIPSYVVAVFLILIFSIYLGWLPTSGWEG 204
Query: 173 FPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDY 232
I LP L + ARF R S L+ L+ D+
Sbjct: 205 IRTKI-------------------------LPTIALALGPLASVARFTRVSLLDTLNQDF 239
Query: 233 VQFLKAKGVP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQ 291
++ AKG + I +HAL+ +++P+VT++G Q L+ GT E +F +PG+G
Sbjct: 240 IRTAYAKGGDDRTVIMKHALRPSMIPLVTIVGPQMAYLMVGTVWVENIFRIPGLGQLFAN 299
Query: 292 AIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
A D+P++V TFI A+ + +NLIVD+LYA++DPR++
Sbjct: 300 AAVTRDYPLLVTSTFILALTVMIMNLIVDVLYAILDPRIK 339
>sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|72438|pir||QREBOB oligopeptide transport system
permease protein oppB - Salmonella typhimurium
>gi|47803|emb|CAA29040.1| (X05491) Opp B (AA1-306)
[Salmonella typhimurium]
Length = 306
Score = 164 bits (411), Expect = 1e-39
Identities = 103/330 (31%), Positives = 168/330 (50%), Gaps = 29/330 (8%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
KF++RR L IPT+ + I F + P P + G E + I+ YHL++P
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERALPPEVLANIEAKYHLNDPI 59
Query: 66 YDQYVFLIKGLITNTIIDP-RTSNPVMTD-IGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
QY +K L + + + D + FPV+ +L AF +IIG+ G+I+
Sbjct: 60 MTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIA 119
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183
ALK+N+ D V FA+ GV P+F + L++ +F + + G +PM+
Sbjct: 120 ALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLPGGGWNGGALKFMILPMV 179
Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243
L + AR R S +E L S++++ +AKG+P
Sbjct: 180 -----------------------ALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPM 216
Query: 244 MR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
R I+RHALK AL+P+++ +G F G++ G+ + ET++GLPG+G V N D+ +V+
Sbjct: 217 RRIIFRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL 276
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
++T + + + N IVD+LYAVIDP++RY
Sbjct: 277 SLTILVGALTILFNAIVDVLYAVIDPKIRY 306
>pir||F75529 probable peptide ABC transporter, permease protein - Deinococcus
radiodurans (strain R1)
>gi|6458040|gb|AAF09943.1|AE001896_8 (AE001896) peptide
ABC transporter, permease protein, putative [Deinococcus
radiodurans]
Length = 340
Score = 164 bits (411), Expect = 1e-39
Identities = 112/338 (33%), Positives = 179/338 (52%), Gaps = 14/338 (4%)
Query: 7 FLIRRILTFIPTIIGVT--LIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEP 64
F++RR++ IP ++ V L+V + P A + G+ IE I L +P
Sbjct: 4 FIVRRLIQ-IPLVMVVLSLLLVGITQLLTPEQRAAPYIRGDNQAAR-IEQIIDQRGLRDP 61
Query: 65 WYDQYVFLIKGLITNTIIDPRTSNPVMTD-IGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
+ QY + + R S + D I +R P T +L ++ IL++ + LG +S
Sbjct: 62 FPVQYGRWAASAVQGDLGFSRASGKDVIDTIKERLPNTIELTLLTAIPILLLSVWLGSLS 121
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG----VPPFP----E 175
AL ++ +ID V+R+ +LG S P F LG ++L IF+ AG V F +
Sbjct: 122 ALNKDKFIDQVLRVLTILGYSLPTFVLGIVLLAIFYAYLGWLPGAGQLEVVNQFAVSDMK 181
Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235
T + +DALL G + + + LP TL + + +RNS L+ LSSDY++
Sbjct: 182 RYTGMLTVDALLNGRWSVAWDVVRHMILPATTLAIVSSADIIKVMRNSMLDVLSSDYIRT 241
Query: 236 LKAKGV-PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294
+AKG+ P + +HA +NAL+P++T+ GL LL G+ ITET+F PG+G + VQ+
Sbjct: 242 ARAKGLTPGVVNRKHARRNALLPVITLGGLLIINLLSGSLITETIFAYPGIGQWVVQSAL 301
Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+D V+ + A+I V +N +VDILY ++DPRVR+
Sbjct: 302 QIDLAGVLGFALLSALIVVVMNTLVDILYGIVDPRVRF 339
>pir||B75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459333|gb|AAF11132.1|AE002000_8
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 333
Score = 163 bits (409), Expect = 2e-39
Identities = 100/331 (30%), Positives = 170/331 (51%), Gaps = 7/331 (2%)
Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDE 63
L +++RR+L FIPT + T++ F I P D E IE +++ + LD+
Sbjct: 7 LLPYILRRVLQFIPTFVLATMLAFFITQAAPGDFLSQLKENPSVKPETIERLRREFGLDQ 66
Query: 64 PWYDQYVFLIKGLITNTIIDP-RTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
P + QY++ K L+ + D + PV I F + L +I+ + IP+G+
Sbjct: 67 PVFVQYLYWFKNLLMGDLGDSFQYKRPVAEVIQGPFLNSLILVVISTVLHFAVSIPVGVY 126
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
SALK S+ D V F+ +G+ P+F+ G L +Y ++ + +P + + +P
Sbjct: 127 SALKPYSFWDRVFTFFSYIGLGIPSFFFGLLAIYAM-LQLKQQFGWDLPLGGKSSSALPT 185
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
+ LR +++F L +P L G+ +RF+R LE L DY++ +AKG+
Sbjct: 186 DISPLRHVWDVFLHAL----IPSIILVLRGISGESRFIRGQMLEVLGQDYIRTARAKGLN 241
Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ Y+HA K A++P + LG L+GG E VF PG+ + A+ N D ++
Sbjct: 242 DRAVTYKHAFKLAMIPTIAGLGGLLPALIGGAGFLEIVFNWPGLTPLQLTALGNQDIYIL 301
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+AVT + ++Y+ NL+ D+L A +DPR+RY
Sbjct: 302 MAVTALGTLLYMIGNLLSDLLLAAVDPRIRY 332
>dbj|BAA14776.1| (D90763) Oligopeptide transport system permease protein OppB.
[Escherichia coli] >gi|1805525|dbj|BAA16039.1| (D90852)
Oligopeptide transport system permease protein OppB.
[Escherichia coli]
Length = 306
Score = 162 bits (407), Expect = 4e-39
Identities = 105/331 (31%), Positives = 165/331 (49%), Gaps = 31/331 (9%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
KF++RR L IPT+ + I F + P P + G E + I+ YHL++P
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAKYHLNDPI 59
Query: 66 YDQYVFLIKGLITNTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
QY +K L DP V + FPV+ +L AFF +I+G+ G+I
Sbjct: 60 MTQYFSYLKQLAHGDF-DPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVI 118
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+ALK+N+ D V A+ GV P+F + L++ IF + G +PM
Sbjct: 119 AALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPM 178
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
+ L + AR R S +E L S++++ +AKG+P
Sbjct: 179 V-----------------------ALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLP 215
Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
RI RHALK AL+P+++ +G F G++ G+ + ET++GLPG+G V N D+ +V
Sbjct: 216 MRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLV 275
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+++T + + + N IVD+LYAVIDP++RY
Sbjct: 276 LSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
>pir||C71130 probable oligopeptide transport permease protein APPB - Pyrococcus
horikoshii >gi|3257218|dbj|BAA29901.1| (AP000003) 323aa
long hypothetical oligopeptide transport permease
protein APPB [Pyrococcus horikoshii]
Length = 323
Score = 162 bits (406), Expect = 5e-39
Identities = 105/339 (30%), Positives = 176/339 (50%), Gaps = 23/339 (6%)
Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60
M ++K ++I+R + I I V + F+I P +PA+ AG E +T+E I+ I+ +
Sbjct: 1 MGSMKVYIIKRSIQLILVIFFVLFLNFIIINAAPGNPAQLMAG-EYSTEEYIKAIEARWG 59
Query: 61 LDEPWYDQYVFLIKGLITNTI------IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILI 114
LD+P + +++ +K L+ + ++P S +M IGK +T I+AF +
Sbjct: 60 LDKPIHIRFLIYMKNLLHGDLGYSYRYLEP-VSKLIMERIGKTLLLTVPSIILAF----L 114
Query: 115 IGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFP 174
+G+ L I+A K +D + I L+ S P+FWLG L++ +F VK + IAG+
Sbjct: 115 VGVWLARIAARKPGGKLDVSLSIITLIFYSMPSFWLGLLLILVFGVKLGILPIAGMTN-- 172
Query: 175 EPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQ 234
I A+ +++ L LP TL + + R R + +E + DYV+
Sbjct: 173 --------IRAVYSSSWDKAFDILKHMVLPVTTLMLIQIPAYFRITRGAIIEQSTEDYVK 224
Query: 235 FLKAKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293
A G K I+ ++ +NA++P VT+LGL+ G G + E VFG PGMG + A
Sbjct: 225 TFDAVGFSKKHIFNKYIFRNAILPPVTILGLRLGYAFSGAALVEIVFGWPGMGRLLLDAA 284
Query: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
D+P+++ + + A+ I D+LYAV+DPR+RY
Sbjct: 285 FARDYPLIMGIYLVIAVSVAVAIFITDLLYAVLDPRIRY 323
>sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1074011|pir||E64184 oligopeptide transport system
permease protein oppB - Haemophilus influenzae (strain
Rd KW20) >gi|1574678|gb|AAC22777.1| (U32792)
oligopeptide ABC transporter, permease protein (oppB)
[Haemophilus influenzae Rd]
Length = 306
Score = 162 bits (405), Expect = 7e-39
Identities = 103/331 (31%), Positives = 172/331 (51%), Gaps = 31/331 (9%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA-TKEAIELIKKMYHLDEP 64
KF+ +R+L +PT+ + F + P P + E+A E + I+ YHL+EP
Sbjct: 3 KFIFKRLLEALPTLFILITFSFFLMRLAPGSPFTS----ERAYPPEVMANIEAKYHLNEP 58
Query: 65 WYDQYVFLIKGLITNTIIDP-RTSNPVMTD-IGKRFPVTFQLAIIAFFFILIIGIPLGII 122
Y QY ++ L + + + D I FPV+ +L ++AF F +++G+ G +
Sbjct: 59 LYKQYFLYLENLSKGDFGPSFKYKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTAGTL 118
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+AL +NS D ++ F++LGV P+F +++ IF + G
Sbjct: 119 AALNQNSRWDYILMSFSMLGVIMPSFVFAPVLVLIFAIYLGWLPAGG------------- 165
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
G ++ LP +L + AR +R S +E L S++++ KAKG+
Sbjct: 166 ----WNGGTAMY------MILPVASLTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLS 215
Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
RI +HAL+ AL+P++T LG F G++ G+ + E+VFGLPGMG V N D+ +V
Sbjct: 216 MSRIILKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLV 275
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+++T + + + N IVDILYA+IDP++RY
Sbjct: 276 LSLTILVGTLTILFNAIVDILYAIIDPKIRY 306
>dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 322
Score = 161 bits (404), Expect = 9e-39
Identities = 94/330 (28%), Positives = 162/330 (48%), Gaps = 16/330 (4%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKA-WAGGEKATKEAIELIKKMYHLDEP 64
K +IRR IP + +++IVF+IA +P DP + ++E I+ ++ Y L++P
Sbjct: 3 KLIIRRCFIMIPQLFLLSVIVFMIAQAMPGDPLTGFYQSNPNISQEVIDAQRERYGLNDP 62
Query: 65 WYDQYVFLIKGLITNTIIDPRTSN-PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
WY QYV + + D PV I R T L+++ +I IPLG++S
Sbjct: 63 WYVQYVRWVGNALQGDFGDSYQQRIPVTEVIDNRIWNTIWLSLLTLIMTYMIAIPLGLLS 122
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIF-FVKYRLTTIAGVPPFPEPITHIPM 182
++ +D + + +G + P F LML++F F T V P +P
Sbjct: 123 GRYNDTLLDRAITGYTYVGFAAPVFITSLLMLFLFGFQLGWFPTGGSVSPHAQP------ 176
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
G F + LP F+L + T +++R+ ++ SDYV+ +A+G
Sbjct: 177 ------GTFGYVLSKINHMLLPAFSLAIITTVSTVQYLRSELIDQKQSDYVRTARARGAS 230
Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ RIY +H +N+L+PI G + GL+GGT E +F PGMG + +I D+ VV
Sbjct: 231 ERRIYLKHLPRNSLLPIAAFFGYELTGLIGGTIFVEMIFSYPGMGQLFLSSIMQRDYSVV 290
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ ++ + + L+ DI+ +++DPR++
Sbjct: 291 TTMVLLFGVASILGALLSDIILSIVDPRIK 320
>sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|7442404|pir||B36263 oligopeptide transport system
permease protein oppB - Escherichia coli
>gi|1787497|gb|AAC74326.1| (AE000223) oligopeptide
transport permease protein [Escherichia coli K12]
Length = 306
Score = 160 bits (401), Expect = 2e-38
Identities = 102/330 (30%), Positives = 163/330 (48%), Gaps = 29/330 (8%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
KF++RR L IPT+ + I F + P P + G E + I+ YHL++P
Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAKYHLNDPI 59
Query: 66 YDQYVFLIKGLITNTIIDPRTSNPVMTD--IGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
QY +K L + + FPV+ +L AFF +I+G+ G+I+
Sbjct: 60 MTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIA 119
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183
ALK+N+ D V A+ GV P+F + L++ IF + G +PM+
Sbjct: 120 ALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPMV 179
Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243
L + AR R S +E L S++++ +AKG+P
Sbjct: 180 -----------------------ALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPM 216
Query: 244 MRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
RI RHALK AL+P+++ +G F G++ G+ + ET++GLPG+G V N D+ +V+
Sbjct: 217 RRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL 276
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
++T + + + N IVD+LYAVIDP++RY
Sbjct: 277 SLTILVGALTILFNAIVDVLYAVIDPKIRY 306
>pir||S77118 oligopeptide transport system permease protein appB - Synechocystis
sp. (strain PCC 6803) >gi|1652757|dbj|BAA17676.1|
(D90908) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 326
Score = 159 bits (398), Expect = 5e-38
Identities = 98/327 (29%), Positives = 172/327 (51%), Gaps = 15/327 (4%)
Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67
+ +R+ + T++G++L++F + P +P A ++E + +++ LD+
Sbjct: 13 ICKRLAIAVITLLGISLVIFSLLALAPGNPLGELATNPSISQEVRDNLRRSLGLDQALPI 72
Query: 68 QYVFLIKGLITNTIIDPRTS-NPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126
+Y+ + L+ + TS +PV+ IG+R P T L A+ L I IPLG+ +AL
Sbjct: 73 RYLKWLWSLLQGDLGYSFTSRSPVIDLIGQRLPTTLWLMGTAYLISLAIAIPLGVTAALY 132
Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDAL 186
R W + ++ +L+G S P F G L + IF V+ R PF T L
Sbjct: 133 RGRWWEPLISGISLMGFSLPTFLTGLLFILIFSVQLRWL------PFIYDST-------L 179
Query: 187 LRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI 246
+ + + +P L F V RFVR++ LE L +Y++ AKG+ +
Sbjct: 180 TVDSMASLGTQIRQLLMPVGVLVFYQSAVILRFVRSAALEELPQNYIRTAYAKGLGTWGM 239
Query: 247 YR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVT 305
+ H LKNA +P++T++ L + G +TE VF +PG+G+ +++I D PVV+AVT
Sbjct: 240 LKNHLLKNASLPLITLIALDVPTIFTGALVTEQVFRVPGIGALLIESIYRSDTPVVMAVT 299
Query: 306 FIYAIIYVTINLIVDILYAVIDPRVRY 332
F+YA++ V + + D++Y ++DPR+R+
Sbjct: 300 FLYAVLIVFFSSLADLIYQLVDPRIRW 326
>pir||H72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980514|gb|AAD35124.1|AE001690_18 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 338
Score = 155 bits (387), Expect = 9e-37
Identities = 107/336 (31%), Positives = 162/336 (47%), Gaps = 20/336 (5%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGG----EKATKEAIELIKKM--- 58
K+L+RR + + T I T IVF++ IP +P G +A EAI ++
Sbjct: 8 KYLLRRFIFLLVTYIVATTIVFILPRAIPGNPLSQILSGLSRVAQANPEAIRAAERTLME 67
Query: 59 -YHLDEPWYDQYVFLIKGLITNTIIDPRTSNP--VMTDIGKRFPVTFQLAIIAFFFILII 115
+ L +PWY QY I + + T P V+ I P T L + A I+
Sbjct: 68 EFGLGKPWYVQYFEFITKALRGDLGTSITFYPRKVIDLIIPVIPWTLILLLPATIVAWIL 127
Query: 116 GIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE 175
G LG ++A KRN+WID V +L+ P +WLG + +++F VK + G
Sbjct: 128 GNSLGALAAYKRNTWIDKGVLTTSLIVSQIPYYWLGMIFIFLFGVKLGWLPVQGAYSQGT 187
Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235
IP + ++ F L + +P ++ MG A +R + L SDY F
Sbjct: 188 ----IPNL------SWSFFVDVLKHYIMPFASIVVSAMGGWAIGMRLMVIYELGSDYAMF 237
Query: 236 LKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQN 295
+ G+ RI+++ +N+L+P +T L L GG+LGG ITE VF PG G +A+
Sbjct: 238 SEYLGMKDKRIFKYVFRNSLLPQITGLALSLGGVLGGALITEIVFNYPGTGYLLFRALTT 297
Query: 296 LDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
LD+P++ + I N IVD LYA+IDPR+R
Sbjct: 298 LDYPLIQGIFVILIASIYLANFIVDFLYALIDPRIR 333
>gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola]
Length = 341
Score = 154 bits (386), Expect = 1e-36
Identities = 95/335 (28%), Positives = 174/335 (51%), Gaps = 27/335 (8%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA---TKEA----IELIKKM 58
+++ +R+++ IP +I +++ +F++ +P DP A EK T E IE ++K
Sbjct: 21 RYIFKRLVSIIPVLIIMSVAIFILINLMPGDPILAMLDPEKTKAMTPEERALYIENMRKF 80
Query: 59 YHLDEPWYDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGI 117
D+ ++Y + + + PV IG +F++ I F +I I
Sbjct: 81 LGYDKGPVERYFLWMGDTFRGEFGYSIKYNKPVNEFIGTYIKRSFRINIWGFLLAFLISI 140
Query: 118 PLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI 177
P+GI +A+K+NS+ D V + ++G+S P+F+L L++ +F + ++ +G+ +P
Sbjct: 141 PVGITAAVKKNSFFDKTVTVLTIVGISLPSFFLALLLIMVFVIFMQILPFSGMS---DPR 197
Query: 178 THIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237
+P ++ LP + + R+VR++ +E L SDY++ +
Sbjct: 198 GILPDWHYII---------------LPVTVVVLTSLVGLIRYVRSAMIEILKSDYIRTAR 242
Query: 238 AKGVP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNL 296
AKG+ K+ IYRHA +NAL+P+VT++GL GL GG+ + E +F PGMG A
Sbjct: 243 AKGLSEKVVIYRHAFQNALIPVVTLIGLYIPGLFGGSIVVEKIFAYPGMGLLMNYAYGFK 302
Query: 297 DFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
D V+ V + ++ + N+ +D+ Y V+DPR+R
Sbjct: 303 DRAVLQTVLLFFGLLTLLGNIFIDVGYMVVDPRIR 337
>gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 311
Score = 154 bits (385), Expect = 2e-36
Identities = 98/330 (29%), Positives = 161/330 (48%), Gaps = 33/330 (10%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
K++ RR++ I T+ + + F + P P ++G +K E + Y LD+P
Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGP---FSGEKKLPPEIEANLNAHYGLDKPL 59
Query: 66 YDQYVFLIKGLITNTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
+ QYV +K + P V I FPV+F L A L +G+ G+I
Sbjct: 60 FVQYVSYLKS-VAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVI 118
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+AL N W D V I + G+S P+F + ++ Y+F +K L +AG +
Sbjct: 119 AALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSW--------- 169
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
A +LP L + M AR R+S +E L+SDY++ KAKG+
Sbjct: 170 ----------------AYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLS 213
Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
R+ + ++ +LG +L G+ I ET+FG+PG+G++ V +I N D+ V+
Sbjct: 214 AQRLQCGTPFETHFCRLLHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVI 273
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ VT +++I + LIVD+LY +IDPR++
Sbjct: 274 MGVTVFFSVILLLCVLIVDVLYGIIDPRIK 303
>gb|AAC69838.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 311
Score = 153 bits (384), Expect = 2e-36
Identities = 96/330 (29%), Positives = 163/330 (49%), Gaps = 29/330 (8%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA---GGEKATKEAIELIKKMYHLD 62
KF+++RI P +I V+ + FL+ Y +PA G T E I + Y +
Sbjct: 3 KFILKRIALMFPLMIVVSFMTFLLTYITNENPAVTILHAQGTPNVTPELIAETNEKYGFN 62
Query: 63 EPWYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121
+P QY +L++ + N T +PV IG F T +L II+ ++I I LG+
Sbjct: 63 DPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIILGV 122
Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181
+SALKR + D +R A + P++W+ +++ VK + +G+ P ++I
Sbjct: 123 VSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTG---PESYI- 178
Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241
LP + G+ R VR S +E L+ DYV +L+A GV
Sbjct: 179 ---------------------LPVIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGV 217
Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ + H L+NAL V++ + ++GG + E +F PG+G +++AI DFPV+
Sbjct: 218 KSITLMLHVLRNALQVAVSIFCMSIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVI 277
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
A I A++++ N + DI+ A+++PR+R
Sbjct: 278 QAYVLIVAVLFIVFNTLADIINALLNPRLR 307
>gb|AAC67218.1| (U78968) transmembrane transport protein DppB [Streptococcus
pyogenes]
Length = 325
Score = 153 bits (383), Expect = 3e-36
Identities = 106/330 (32%), Positives = 165/330 (49%), Gaps = 21/330 (6%)
Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA-TKEAIELIKKMYHLDEPWY 66
+I +I+ + I GV+++ F++ + P DP A + + T + I Y LD+P
Sbjct: 8 IIWKIIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQYKAIAHHYGLDKPAL 67
Query: 67 DQYVFLIKGLITNTIIDPRTS----NPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
QY +K +I D TS PV I R +F L +++ +IG LG +
Sbjct: 68 VQYFIWLKNVIQG---DLGTSLVYRQPVSDIIRSRAGASFILMGLSWILSGLIGFILGTL 124
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
SA + +D VVR F+ L +S P FW+G + L IF V+ I P I +
Sbjct: 125 SAFHQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFPIGISSPIGTLSQDITL 184
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
D + +HL LP FTL LG+ R + LSS+YV F +A+G
Sbjct: 185 ADRV---------KHLM---LPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGET 232
Query: 243 KMRIYRH-ALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ +I++H L+NA+VP +T+ FG L GG+ + E VF PG+GS +A D P++
Sbjct: 233 QWQIFKHHCLRNAIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLL 292
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+A+ I + NLI DIL ++I+P++R
Sbjct: 293 LAIVMIGTLFVFAGNLIADILNSIINPQLR 322
>gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis]
Length = 309
Score = 153 bits (383), Expect = 3e-36
Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 45/336 (13%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
+++++R + T+ +T + F + +P P K EK + E+I + Y L++P
Sbjct: 3 RYVLKRFVYMALTLFLITTLTFFLMKLLPGSPLK---NQEKLSPAQKEIILEKYGLNDPV 59
Query: 66 YDQYVFLIKGLITNTI-IDPRTSNPVMTD-IGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
QY + L + + + N +TD I R + QL + A IG+ LGI++
Sbjct: 60 PVQYARYLGNLAKGDLGVSFQYDNRPVTDMIVDRIGPSAQLGLQAIILGTFIGLILGIVA 119
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183
AL+ N+W+D I ++LG+S P+F L+ Y VK +A
Sbjct: 120 ALRNNTWVDYGATIISVLGMSVPSFVFAALLQYFVGVKLGWFPVA--------------- 164
Query: 184 DALLRGNFELFKQHLARFW-------LPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFL 236
FW +P L + ARF R +E + +DY+
Sbjct: 165 -----------------FWKGPEFTVMPTIALSMAVIATIARFSRAELIEVMQADYILTA 207
Query: 237 KAKGVPK-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQN 295
KAKG+ + + I +HAL+NAL+P+VT+LG L+ GT + E ++ +PG+G V++I
Sbjct: 208 KAKGISQGVIIVKHALRNALIPVVTILGPMVAALITGTLVIEQIYAVPGLGEQFVKSITV 267
Query: 296 LDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
D+ V++ T Y+ I++ + IVDILY +IDPR+R
Sbjct: 268 NDYTVIMGTTIFYSAIFILVIFIVDILYGIIDPRIR 303
>emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.]
Length = 207
Score = 152 bits (380), Expect = 6e-36
Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 18/219 (8%)
Query: 115 IGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFP 174
+G+ G+++A + ++D + F+ +G S P F +GY+++Y F ++ R + G
Sbjct: 6 VGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSIN 65
Query: 175 EPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQ 234
+ + P L+ LP TL + AR R S LE LS DY++
Sbjct: 66 QGVA--PWFLHLI---------------LPTVTLSVPYIAFIARITRGSMLEVLSEDYMR 108
Query: 235 FLKAKGV-PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293
AKG P ++ HALKNA VPI+TV+G+ F ++GG +TETVF +PG+G V AI
Sbjct: 109 TAAAKGASPFAMLFHHALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAI 168
Query: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+N D+P++ V + + +YV INL+VD+ Y +IDPR+RY
Sbjct: 169 KNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIRY 207
>sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|495179|gb|AAB00535.1| (U09553) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 151 bits (377), Expect = 1e-35
Identities = 99/328 (30%), Positives = 164/328 (49%), Gaps = 15/328 (4%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
K +IRRIL IP + ++++VF A +P DP G E +E +++ L +PW
Sbjct: 3 KVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHE-VEALRRAAGLYDPW 61
Query: 66 YDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124
++QY+ +L + N + PVMT IG R TF +++++ + IP+ I++A
Sbjct: 62 WEQYLRWLGNAIHGNLGMSYNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVAA 121
Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMID 184
W D + + + P + L+++IF Y L FP T P D
Sbjct: 122 RNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIF--GYSLNW------FPTGGTVSP--D 171
Query: 185 ALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKM 244
A+ G +F + LP F+L G + R+ L+ + DYV+ +AKGV +
Sbjct: 172 AM--GIIPVFFSKIYHMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEK 229
Query: 245 RIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVA 303
I+R H L+NA +PI + G GLLGG ET+FG PG+G + +I D+ ++ A
Sbjct: 230 VIFRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITA 289
Query: 304 VTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ + + + L+ DI+ A++DPR+R
Sbjct: 290 LILLNGFLGLLGALLSDIIMAMVDPRIR 317
>sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB
>gi|1075747|pir||C53290 oligopeptide transport protein
oppB - Lactococcus lactis subsp. lactis
>gi|308852|gb|AAA16165.1| (L18760) transmembrane protein
[Lactococcus lactis]
Length = 319
Score = 149 bits (373), Expect = 4e-35
Identities = 99/328 (30%), Positives = 163/328 (49%), Gaps = 15/328 (4%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65
K +IRRIL IP + ++++VF A +P DP G E +E +++ L +PW
Sbjct: 3 KVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHE-VEALRRAAGLYDPW 61
Query: 66 YDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124
++QY+ +L + N + PVMT IG R TF +++++ + IP+ I++A
Sbjct: 62 WEQYLRWLGNAIHGNLGMSYNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVAA 121
Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMID 184
W D + + + P + L+++IF Y L FP T P D
Sbjct: 122 RNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIF--GYSLNW------FPTGGTVSP--D 171
Query: 185 ALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKM 244
A+ G +F + LP F+L G + R+ L+ + DYV+ +AKGV +
Sbjct: 172 AM--GIIPVFFSKIYHMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEK 229
Query: 245 RIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVA 303
I+R H L+NA +PI + G GLLGG ET+FG PG+G + +I D+ ++ A
Sbjct: 230 VIFRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITA 289
Query: 304 VTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ + + L+ DI+ A++DPR+R
Sbjct: 290 LILLNGFSGLLGALLPDIIMAMVDPRIR 317
>gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 300
Score = 149 bits (372), Expect = 5e-35
Identities = 96/317 (30%), Positives = 156/317 (48%), Gaps = 30/317 (9%)
Query: 19 IIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYDQYVFLIKGLIT 78
II + +IV + + + A P ++G +K E + Y LD+P + QYV +K +
Sbjct: 2 IITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKS-VA 60
Query: 79 NTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVV 135
P V I FPV+F L A L +G+ G+I+AL N W D V
Sbjct: 61 MWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNKWQDYTV 120
Query: 136 RIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFK 195
I + G+S P+F + ++ Y+F +K L +AG +
Sbjct: 121 AILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSW---------------------- 158
Query: 196 QHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRIY-RHALKNA 254
A +LP L + M AR R+S +E L+SDY++ KAKG+ R+ +
Sbjct: 159 ---AYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETH 215
Query: 255 LVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVT 314
++ +LG +L G+ I ET+FG+PG+G++ V +I N D+ V++ VT +++I +
Sbjct: 216 FCRLLHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLL 275
Query: 315 INLIVDILYAVIDPRVR 331
LIVD+LY +IDPR++
Sbjct: 276 CVLIVDVLYGIIDPRIK 292
>sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB
>gi|7449120|pir||H64877 peptide transport system
permease protein sapB - Escherichia coli
>gi|1279401|emb|CAA65938.1| (X97282) SapB protein
[Escherichia coli] >gi|1742115|dbj|BAA14854.1| (D90767)
Peptide transport system permease protein SapB.
[Escherichia coli] >gi|1742124|dbj|BAA14863.1| (D90768)
Peptide transport system permease protein SapB.
[Escherichia coli] >gi|1787550|gb|AAC74375.1| (AE000227)
homolog of Salmonella peptide transport permease protein
[Escherichia coli K12]
Length = 321
Score = 147 bits (368), Expect = 1e-34
Identities = 99/330 (30%), Positives = 157/330 (47%), Gaps = 30/330 (9%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F +RRIL I T+ +T + F ++Y P P + + +
Sbjct: 4 FTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGAS----------------------LW 41
Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
+ +VF GLI + P+ + + FP T +L I+AF F LI+GIP+G+I+ +
Sbjct: 42 NAWVFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGI 101
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG---VPPFPEPITHIPM 182
R+ W D ++ ALLG S P FWL L+ + ++G + +PIT +
Sbjct: 102 TRHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFAL 161
Query: 183 IDALLRGN---FELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239
IDA L + E+ + LP TL R +R S +E +YV+ +
Sbjct: 162 IDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAAATR 221
Query: 240 GVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298
G+ + I RH L NAL P++ LGLQF +L ITE VF PG+G + + AI+ D+
Sbjct: 222 GLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDY 281
Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVIDP 328
+ A + + + +N+I DIL A+ +P
Sbjct: 282 AAISAGVMVCGSLVIIVNVISDILGAMANP 311
>pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001545|dbj|BAA10172.1| (D64000) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 337
Score = 146 bits (364), Expect = 4e-34
Identities = 96/335 (28%), Positives = 162/335 (47%), Gaps = 27/335 (8%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
++++R++ + T++ +L+ F I P K + E ++ +K + LD+PWY
Sbjct: 15 YVVQRLIEGLITLLLASLLSFAIVQLAPGSYLDTLQQNPKISPETLQQLKVQFGLDQPWY 74
Query: 67 DQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124
QY + ++T + V + + +R P T LAI + I IPLGI+ A
Sbjct: 75 VQYWRWLTQVVTRFNFGESFVYNRSVASLLIERIPATLLLAITSIILTWAIAIPLGIVGA 134
Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMID 184
+++N++ID +R+ + +G P+F L+L++ V P P+ + ID
Sbjct: 135 VQQNTFIDRSLRVISYIGQGFPSFITALLLLFL---------AQSVSPLL-PVGDMTSID 184
Query: 185 ALLRGNFELFKQHLARFW-------LPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237
E H + W LP L R +R L+ L DY+Q +
Sbjct: 185 FA-----EFSWPH--KVWDVAWHMILPTLALSITSFAGLQRLMRGQLLDVLRQDYIQTAR 237
Query: 238 AKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNL 296
AKG+P+ R IY HAL+NA+ P++T+LG +F LL G I E F PG+G +QA+
Sbjct: 238 AKGLPENRVIYVHALRNAINPLITILGFEFASLLSGAFIAEFFFNWPGLGRLILQAVTAQ 297
Query: 297 DFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
D +V+ + A + + NL+ D+L DPR++
Sbjct: 298 DLYLVMGSLMMGATLLIVGNLLADLLLKFTDPRIQ 332
>pir||D75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460715|gb|AAF12420.1|AE001863_45
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 328
Score = 144 bits (360), Expect = 1e-33
Identities = 97/333 (29%), Positives = 166/333 (49%), Gaps = 13/333 (3%)
Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLD 62
++ + +RRIL IPT++ ++++ FL+ P + + +KE + I + LD
Sbjct: 5 HMLNYTLRRILGMIPTLLVISVLCFLVIKLQPGSFIDQYLEDPRFSKETVANITRQLGLD 64
Query: 63 EPWYDQYVFLIKGLITNTIIDPRTSN--PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
+P + QY+ I G++T ++ PV + IG+R T +A + +I +PLG
Sbjct: 65 QPAWKQYLNWITGVVTRLDFGYSFASGAPVTSIIGERLGWTVFIAALTLALTWLIAVPLG 124
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
I +A R + +G++ P F L L+L + + T + G +
Sbjct: 125 IYTAFNRYGIPAQIANFLGYVGLAIPDF-LAALLLVVLVRQLGGTNVGG-------LFRP 176
Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
MIDA +F LA W+P +G G+ R +R S L+ LS DY++ KAKG
Sbjct: 177 DMIDA--PWSFAKVLDLLAHLWIPVLAVGLEGVAGLMRQMRASTLDVLSQDYIRTAKAKG 234
Query: 241 VPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299
+P+ R I++HA++NA+ P++++ GL L+ GT I V LP +G ++ N D
Sbjct: 235 LPQGRVIWKHAVRNAINPLISLAGLSLPTLISGTIIISIVMSLPTIGPLLYDSLLNKDQY 294
Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ + + A + + NL+ D+ A DPRVRY
Sbjct: 295 TAMTLLMLSAFLLLIGNLLSDLALAWADPRVRY 327
>pir||B82356 peptide ABC transporter, permease protein VC0172 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654575|gb|AAF93348.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 342
Score = 144 bits (360), Expect = 1e-33
Identities = 95/329 (28%), Positives = 166/329 (49%), Gaps = 19/329 (5%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
FL++R+ + + ++L+ F I + DP + G + E + ++ L++P+
Sbjct: 21 FLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAER-QALRDELGLNDPFI 78
Query: 67 DQYVFLIKGLITNTIIDPRTS----NPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
+Y + + D TS P + I + T +L A I++ IPLG+
Sbjct: 79 IKYSRFVTAAVQG---DLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 135
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
SA+ S +V + +G+S P F +++Y+F ++ + P + T
Sbjct: 136 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIE-----LGWXPSYGRGET---- 186
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
++ L + L LP L + + + R VR+ LE LSS+Y++F +AKG+P
Sbjct: 187 VNLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLP 246
Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+IY +HALKN ++P++TV G+Q G ++ T +TETVF PG G ++AI +D P++
Sbjct: 247 LNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLI 306
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRV 330
A +I+V N IVD+LY +I+P V
Sbjct: 307 TAYVIFVGLIFVVTNTIVDLLYGLINPTV 335
>dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 310
Score = 143 bits (357), Expect = 3e-33
Identities = 94/329 (28%), Positives = 163/329 (48%), Gaps = 29/329 (8%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA---GGEKATKEAIELIKKMYHLDE 63
++++R+ + IP + ++ + F+ P DPA+ G T E I K+ LD+
Sbjct: 4 YVMKRLFSVIPLLFIISFLTFVFINLSPLDPAEVVLQAQGVPTITDELIAQTKQELGLDQ 63
Query: 64 PWYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
P+ QY +L+ L + T PV IG F T +L +++ I+++ I LG+I
Sbjct: 64 PFLIQYFHWLLACLQLDFGHSYVTKEPVSAIIGPAFFNTLKLTLVSSIVIIVLSILLGVI 123
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
A+K ID +R F+ L + P++ L M++ F VK L +G+ + I + +
Sbjct: 124 CAMKGGKAIDKSIRGFSFLLMGIPSYLLASFMIWYFSVKLDLLPTSGLDSYQSYILPVTV 183
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
I A +G+ R VRNS L L+ D+V + +A G+
Sbjct: 184 ITASY-------------------------VGIYFRSVRNSMLSHLNEDFVLYGRACGIS 218
Query: 243 KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
+ ++ H L+N+L +++ + +LGGT + E VF PG+GS +V++I N DFP++
Sbjct: 219 EKKVTIHILRNSLQVAISIFCMGIPTILGGTVVVENVFAWPGLGSLSVKSILNRDFPIIQ 278
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331
A I A+ +V N DI+ A ++P+ R
Sbjct: 279 AYVLILAVSFVFFNTFSDIINAAMNPKQR 307
>gi|10954708 hypothetical ABC-transporter gene~similar to agaB gene
[Agrobacterium rhizogenes] >gi|8918708|dbj|BAA97773.1|
(AB039932) hypothetical ABC-transporter gene~similar to
agaB gene [Agrobacterium rhizogenes]
>gi|10567372|dbj|BAB16181.1| (AP002086) hypothetical
ABC-transporter gene~similar to agaB gene [Agrobacterium
rhizogenes]
Length = 319
Score = 142 bits (354), Expect = 7e-33
Identities = 96/345 (27%), Positives = 155/345 (44%), Gaps = 47/345 (13%)
Query: 9 IRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYDQ 68
+RR+L I+ V I+F + +P DPA+ GG A + + K LD Q
Sbjct: 1 MRRLLQGGLIILLVIFIIFTLLRVVPGDPARLIVGG-MAPDAVVAMKAKELGLDRAIPLQ 59
Query: 69 YVFLIKGLITNTI----IDPRT---------SNPVMTDIGK-------RFPVTFQLAIIA 108
+V + L T + + P++ ++P + K P+T QLA +A
Sbjct: 60 FVSYLGHLATGDLGTSFVRPKSGASLAGSAYNDPTREERAKVLDLILGTLPMTLQLAAVA 119
Query: 109 FFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIA 168
L++ +PLG+ L + W D + + VSTP FWLG ++ VK R+
Sbjct: 120 LVIALLVAVPLGLAGGLYQGRWPDKLALALGSIFVSTPNFWLGIVLTLFLSVKLRVLPAI 179
Query: 169 GVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEAL 228
G F I LP L R + S + L
Sbjct: 180 GYNGFEYTI-------------------------LPAIVLAVEIAPFILRTLTVSVAQVL 214
Query: 229 SSDYVQFLKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGS 287
D++Q +G+ + R I+ H L N+ VP++ +LG+Q G LLGG + E +F PG+G
Sbjct: 215 REDFIQLAAVRGLSRGRTIFSHVLGNSAVPLINLLGVQLGMLLGGVLVVEFIFDYPGLGL 274
Query: 288 YAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ A+Q DFP++ V ++++V IN++VD++ IDPR+ Y
Sbjct: 275 LTINAVQQRDFPLIQGVAIFISVMFVVINILVDLIAMTIDPRLEY 319
>dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus]
Length = 320
Score = 141 bits (352), Expect = 1e-32
Identities = 74/254 (29%), Positives = 136/254 (53%), Gaps = 7/254 (2%)
Query: 85 RTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVS 144
+ N + ++ FP T +L AF L+IGIPLG ++ +K+ W+DT + ++ G S
Sbjct: 60 KNGNAIYDELAVVFPATLELCFFAFLVSLLIGIPLGTVAGMKQGKWLDTSISFMSMSGYS 119
Query: 145 TPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI---PMIDALL-RGNF--ELFKQHL 198
P FW+ L++ +F ++Y+L +AG I H+ +IDA + +G + + +
Sbjct: 120 APIFWVALLLIMVFSLEYQLFPVAGRYDLLYEIDHVTGFAIIDAFMAKGEYRAHALQSVI 179
Query: 199 ARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRIY-RHALKNALVP 257
LP L +R+S E +S +Y++ + KG+ I +H L+NA+ P
Sbjct: 180 EHMVLPCLVLALAPTTQVVGLMRSSVAEVMSQNYIRAARIKGLSNREIVTQHVLRNAIPP 239
Query: 258 IVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINL 317
I+ +G+Q ++ ITE++F PG+G + + A+ N D+ + A + A + +T N+
Sbjct: 240 IIPKVGVQLSSMITLAIITESIFNWPGIGRWLLDALANQDYASIQAGVMVLATLVLTANI 299
Query: 318 IVDILYAVIDPRVR 331
+ D++ A+I+P VR
Sbjct: 300 LSDLIGAMINPLVR 313
>sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB
>gi|628818|pir||S39586 peptide transport system permease
protein sapB - Salmonella typhimurium
>gi|414209|emb|CAA52285.1| (X74212) sapB [Salmonella
typhimurium]
Length = 321
Score = 139 bits (347), Expect = 4e-32
Identities = 93/330 (28%), Positives = 153/330 (46%), Gaps = 30/330 (9%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F +RR+L + T+ +T I F ++Y P P + + +
Sbjct: 4 FTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGAS----------------------LW 41
Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125
+ +VF GL+ + + + + FP T +L I+AF F L++GIP+G ++ +
Sbjct: 42 NAWVFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGTVAGV 101
Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPF---PEPITHIPM 182
R+ W D + ALLG S P FWL L+ F + ++G +P+T +
Sbjct: 102 TRSKWPDRFISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFAI 161
Query: 183 IDALLRG---NFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239
IDA + E+ + LP TL R +R S +E +YV+ +
Sbjct: 162 IDAWISDCPWRDEMVMSAIRHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVKAAATR 221
Query: 240 GVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298
G+ + I R H L NAL P++ LGLQF +L ITE VF PG+G + + AI+ D+
Sbjct: 222 GLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAIRQQDY 281
Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVIDP 328
+ A + + + +N+I DIL A+ +P
Sbjct: 282 AAISAGVMVIGSLVIVVNVISDILGAMANP 311
>pir||A75142 oligopeptide transport system permease protein appb PAB0628 -
Pyrococcus abyssi (strain Orsay)
>gi|5458361|emb|CAB49850.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT SYSTEM PERMEASE PROTEIN APPB [Pyrococcus
abyssi]
Length = 334
Score = 138 bits (345), Expect = 7e-32
Identities = 97/338 (28%), Positives = 166/338 (48%), Gaps = 20/338 (5%)
Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKA----WAGGEKATKEAIELIK 56
M+ +K++L+R+ + +I T I F+I +P DP +A +ATK
Sbjct: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61
Query: 57 KMYHLDEPWYDQYVFLIKGLITNT--IIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILI 114
+ + LD+P ++QY+ K ++ I PV + + P L A
Sbjct: 62 QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121
Query: 115 IGIPLGIISALKRNSWIDT-VVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPF 173
+G LG ++ +N +D ++ IF L S P FW L+ Y+F K I+G +
Sbjct: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSY 178
Query: 174 PEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYV 233
IP + ++E K +L + LP +L + +G A +RN + + +DY+
Sbjct: 179 GI----IPSL------SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYI 228
Query: 234 QFLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293
++L++ GV + + +HA KNA++P VT L LQ G L+ G + VF PG+G +Q I
Sbjct: 229 RYLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288
Query: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
N D+ ++ + + + N ++D+LYA+IDPRVR
Sbjct: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326
>pir||A71212 probable oligopeptide transport system permease protein appB -
Pyrococcus horikoshii >gi|3258405|dbj|BAA31088.1|
(AP000007) 349aa long hypothetical oligopeptide
transport system permease protein appB [Pyrococcus
horikoshii]
Length = 349
Score = 132 bits (329), Expect = 6e-30
Identities = 107/354 (30%), Positives = 159/354 (44%), Gaps = 40/354 (11%)
Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIP-------------------ADPAKAWAGG 44
L K+L+ RI+ + + VTL+V + K+ A +A A
Sbjct: 3 LGKYLVIRIINALIVLSIVTLVVSALFVKVAEKDLENRIQELINSEYQSLAQRGRAPANP 62
Query: 45 EKATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPR-----TSNPVMTDIGKRFP 99
++ E I + + LD P++ + ++ K I + R T V I P
Sbjct: 63 DEWRAERIAYYRHQFKLDRPYWWRVLYYSKRTIMLDFGNTRIPIFGTERNVKNIISLALP 122
Query: 100 VTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFF 159
T L A ++IIG+ LG+ +A S D + I AL+ S P +W G + L IF
Sbjct: 123 RTILLFTTAQIIVIIIGLLLGVKAAQMVGSAFDRSLSILALVTTSIPMWWFGMMSLLIFA 182
Query: 160 VKYRLTTIAGVP-PFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTAR 218
K +P P + H+ + R LP FT+ F+ G A
Sbjct: 183 FKLGWFPANSMPDPNLTGLAHVLDV--------------AKRLVLPIFTIVFVLFGGWAW 228
Query: 219 FVRNSFLEALSSDYVQFLKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITE 277
RN + + D++ +AKGVP+ + IY HAL+ A PIVT+ G LGG ITE
Sbjct: 229 VTRNIMITTMQEDFIMAARAKGVPERKVIYGHALRAAAPPIVTMTIFSLLGSLGGAIITE 288
Query: 278 TVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+VF PGMG AIQ + +V+ +TFI +Y+T +I DI Y +DPRVR
Sbjct: 289 SVFNWPGMGRVYWIAIQTNEINLVMGLTFISVALYLTGVIIADISYGFLDPRVR 342
>pir||C82170 peptide ABC transporter, permease protein VC1681 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656197|gb|AAF94831.1| (AE004246) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 320
Score = 132 bits (328), Expect = 7e-30
Identities = 85/335 (25%), Positives = 160/335 (47%), Gaps = 35/335 (10%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
+ +R+ FI T++ +T++ + +A DP W + + W
Sbjct: 4 YTVRKFNLFIITLLILTMVGYSLAR---FDPHSPWT---------------LIGFWQGWS 45
Query: 67 DQYVFLIK---GLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
V L++ GL N + P++ ++ FP T +L IAF L++GIP+G ++
Sbjct: 46 SYLVQLMEFNFGLNKNGV-------PILHELLVVFPATIELCTIAFILSLLVGIPIGTLA 98
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI--- 180
+++ W+DT++ ++ G S P FWL +M+ F + + + +AG I H+
Sbjct: 99 GMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGF 158
Query: 181 PMIDALLRGN---FELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237
+IDA L + + + + LP L +R S E ++ +Y++ K
Sbjct: 159 ALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAK 218
Query: 238 AKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNL 296
KG+ +I +H L+NA+ P++ G+Q +L ITE++F PG+G + + A+ N
Sbjct: 219 IKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANR 278
Query: 297 DFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
DF + A + + +T N++ D++ A +P VR
Sbjct: 279 DFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
>pir||T35939 probable transport permease protein - Streptomyces coelicolor
>gi|4158198|emb|CAA22761.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 334
Score = 131 bits (326), Expect = 1e-29
Identities = 89/326 (27%), Positives = 165/326 (50%), Gaps = 18/326 (5%)
Query: 10 RRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEK--ATKEAIELIKKMYHLDEPWYD 67
RR L +P ++ VT F IA P DP +A+AG A +E ++ +++ +DE +
Sbjct: 19 RRALFAVPVVLVVTFGAFAIAAASPFDPVRAYAGTAALGADQETLDRLRENLGVDESFVA 78
Query: 68 QYVFLIKGLITNTIIDPRT-SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126
++ + +T + PV IG+R + L +AF + +G+ LG+++A +
Sbjct: 79 RWWHWLTSALTGDLGHSSVLRQPVTQVIGERLVWSALLCAVAFAVAVGLGLLLGVLAARR 138
Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDAL 186
S +D V + + P FW+ L +++F +++ + G+ +
Sbjct: 139 PGSVLDRAVTSLSYTLEAAPVFWIALLAVWLFALQWDVLPAGGLTDTASQ----QVTPGQ 194
Query: 187 LRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI 246
+ G+ L LA LP FTL +VR +AL+ D V+ +A+G+ + +
Sbjct: 195 VAGHIVLPAGVLAVSQLPWFTL----------YVRQGVGDALAEDPVRGARARGLAEGTV 244
Query: 247 Y-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVT 305
HAL++ L+P++T++G + L+ G + ETVF PG+ + V+A +DFP++ A+T
Sbjct: 245 LVGHALRSGLLPVLTLIGSRVPELITGALLVETVFSWPGIAAATVEAATAVDFPLLAALT 304
Query: 306 FIYAIIYVTINLIVDILYAVIDPRVR 331
+ + + NL+ D+LY + DPRV+
Sbjct: 305 VLATVAVLAGNLLADLLYGLFDPRVK 330
>pir||A75027 oligopeptide transport permease protein appb PAB1194 - Pyrococcus
abyssi (strain Orsay) >gi|5459169|emb|CAB50655.1|
(AJ248288) OLIGOPEPTIDE TRANSPORT PERMEASE PROTEIN APPB
[Pyrococcus abyssi]
Length = 353
Score = 129 bits (321), Expect = 5e-29
Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 17/292 (5%)
Query: 45 EKATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRT----SNPVMTDIGKRFPV 100
E+ K + + K Y LD P++ + + K + D R+ V I P
Sbjct: 67 EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPR 126
Query: 101 TFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFV 160
T L A ++ +GI LG+ +A K D + +FA++ S P +W G +++ +F
Sbjct: 127 TVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSF 186
Query: 161 KYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFV 220
K L G+ P + F + L LP T+ F+ G A
Sbjct: 187 KLNLLPSGGMTSIPP------------KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVT 234
Query: 221 RNSFLEALSSDYVQFLKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETV 279
RN + L D++ +AKGVP+ + IY HAL+ A PI+T+ G LGG +TE+V
Sbjct: 235 RNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESV 294
Query: 280 FGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
F PGMG AIQ ++ +++ T+I +Y+ L+ D+ Y +DPRV+
Sbjct: 295 FNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346
>sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1283C
>gi|7442425|pir||G70771 probable peptidetransport system
permease - Mycobacterium tuberculosis (strain H37RV)
>gi|1322407|emb|CAA97749.1| (Z73419) oppB [Mycobacterium
tuberculosis]
Length = 325
Score = 128 bits (319), Expect = 8e-29
Identities = 81/329 (24%), Positives = 150/329 (44%), Gaps = 7/329 (2%)
Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDE 63
+ ++L RR+L ++ + + + + + + + + I+ LD
Sbjct: 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60
Query: 64 PWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
P +Y + + T PV T++G+R V+ +L ++ F + G+ +G
Sbjct: 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183
A+++ D V+ ALL +STP F + L++ R+ G+ F P +
Sbjct: 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLI---LGALRVNWAVGIQLFDYTGETSPGV 177
Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243
G ++ L LP TL +R+ RN+ L+ L D+++ +AKG+ +
Sbjct: 178 AG---GVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTR 234
Query: 244 MR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
R + +H L+ AL+P+ T+ GL+ G E +FG GMG + V+ I D +V
Sbjct: 235 RRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVA 294
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331
A+T + + L+ D++YA +DPRVR
Sbjct: 295 AITVFSGAVVLLAGLLSDVIYAALDPRVR 323
>gb|AAC69843.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 328
Score = 128 bits (319), Expect = 8e-29
Identities = 88/330 (26%), Positives = 159/330 (47%), Gaps = 33/330 (10%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA--TKEAIELIKKMYHLDE 63
K ++ R++ I + ++ + F++ P +P + A + E I K L++
Sbjct: 5 KSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLND 64
Query: 64 PWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRF-PVTFQLAIIAFFFILIIGIPLGII 122
Q+ + L+ + S +T I + P+T ++ L I IPLGII
Sbjct: 65 SLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGII 124
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+A + + W D V+R+ + L +S PAF++G ++L+I +T++
Sbjct: 125 AAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFI-------------------VTNLMN 165
Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
ID+++ L++F LP TL R VR++ L L S+ VQ + +G+
Sbjct: 166 IDSVI----------LSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMN 215
Query: 243 KMRIYRH-ALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ I H LK ++PI+ +LG+ G L+GGT + E +F +PG+G + +I++ D+PV+
Sbjct: 216 ERYILIHDLLKPTILPIIPLLGISLGSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVI 275
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
V IN I D+L ++DP+ R
Sbjct: 276 QGCVLFIGFFVVIINTIADLLTLLLDPKQR 305
>gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB-2) [Sulfolobus
solfataricus]
Length = 333
Score = 127 bits (317), Expect = 1e-28
Identities = 80/337 (23%), Positives = 168/337 (49%), Gaps = 28/337 (8%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIP----ADPAKAWAGGEKATKEA------IELIK 56
+ I+R + I ++G+ ++++ + +P +PA +A + K A I I
Sbjct: 11 YAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSASYFQNIINDIT 70
Query: 57 KMYHLDEPWYDQYVFLIKGLIT-NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILII 115
+Y ++P Y Q++ + L + N D + V+ ++ + P T L + F F ++
Sbjct: 71 TLYGFNQPLYVQFIRYLYALFSFNLGYDFQHHEYVINEVLQYLPYTIILTLPPFIFQTLL 130
Query: 116 GIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE 175
I +G +ALKRN +D ++ + +L + P F++ ++ +F V + I+G+
Sbjct: 131 AIVVGAYAALKRNKAVDHIISNYMILQYNIPGFFILAVLWVVFAVYIKAIPISGIQ---- 186
Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFL-GMGVTARFVRNSFLEALSSDYVQ 234
+ H+ I ++L+ +WLP F+ G V +RN+ ++ L SD+V+
Sbjct: 187 -VLHLNDIVSILKV-----------YWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVK 234
Query: 235 FLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294
+ + G+ + + A +N+++P++T G+ +LGG E +FG+PGMG + A
Sbjct: 235 YARLSGLKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAAT 294
Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
L+ P++ F + + + +D++Y ++DPR++
Sbjct: 295 ELNIPLLTGSFFFLTLYALVVLYAMDLIYPLVDPRIK 331
>pir||E72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981607|gb|AAD36141.1|AE001766_7 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 327
Score = 127 bits (315), Expect = 2e-28
Identities = 91/335 (27%), Positives = 159/335 (47%), Gaps = 21/335 (6%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPAD-----PAKAWAGGEKATKEAIELIKKMYHL 61
+++RR++T T+ +++I F+I P D A+ GE IE +KK Y L
Sbjct: 4 YILRRLITAFITLWIISIISFVIIQLPPGDFLTSYIAQLKVSGEDVDIATIEALKKQYGL 63
Query: 62 DEPWYDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
D+P Y QY+ + G++ PV + R VT +A ++ F I G +G
Sbjct: 64 DKPIYVQYLKWLWGILHGDFGYSFSWKKPVNELLWNRLGVTVLVATLSLIFSWIFGFIIG 123
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFF--VKYRLTTIAGVPPFPEPIT 178
+ SA+ S D + I +G++ P F L ++++ + L+ + V P+T
Sbjct: 124 MYSAVHPYSIGDYLATILGYIGLAVPNFLLALILMWGIYSLTGINLSGLHSVKYLNTPMT 183
Query: 179 HIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKA 238
+D L HL W+P LG GM R +R + L+ L YV+ +
Sbjct: 184 IDKFLDIL---------NHL---WIPVLVLGTSGMAGLIRTLRANLLDELHKPYVEAALS 231
Query: 239 KGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297
KG+P+ +++ ++ L+ A++P ++ +G + G IT V LP +G + A++N D
Sbjct: 232 KGLPENKVFWKYPLRIAMIPFISTVGWSLPWIFSGATITAIVLNLPSVGPLLLNALKNQD 291
Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ ++ + V LI DIL A +DPR+R+
Sbjct: 292 MYLAGSLVMFLSFFTVIGTLISDILLAWVDPRIRF 326
>emb|CAC12449.1| (AL445067) dipeptide transport system, permease protein (dppB)
related protein [Thermoplasma acidophilum]
Length = 340
Score = 126 bits (313), Expect = 4e-28
Identities = 89/335 (26%), Positives = 152/335 (44%), Gaps = 19/335 (5%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAW------AGGEKATKEAIELIKKMY 59
K++I++I F IG + FL+ +P +PA AGG + ++ Y
Sbjct: 12 KYIIKKISLFFGIFIGAITVNFLLPRMMPGNPAVVVYNEILKAGGSGVNPAYLHQLEVEY 71
Query: 60 HLDE-PWYDQYVFLIKGLITNTI--IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIG 116
+ P YDQY + L + PV + + P T L I + +G
Sbjct: 72 GISNAPIYDQYFQYLWNLFHGNLGLSIAFYPEPVSAILAEALPWTLFLVISSITISFFLG 131
Query: 117 IPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEP 176
LG + + RN+ D + +FA+ S PAF L +++L IF V + + G
Sbjct: 132 NRLGRYAGINRNTSKDLAIDVFAMFMASFPAFVLAFIVLDIFSVYGHIFPLGGAYG---- 187
Query: 177 ITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFL 236
++ + N + LP T+ +G +RN+ + L+SD++ +
Sbjct: 188 ------VNVNMGFNVPFIISVIYHAVLPVLTIILTSLGGWVLGMRNNIIPNLNSDFINYS 241
Query: 237 KAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNL 296
+ G +I A KNAL+P +T + G + G I E++F PG+G Y + AI +L
Sbjct: 242 ENLGFKDYQIKSIAYKNALLPNLTGFAMSIGLSVSGVIIEESIFSYPGVGLYMITAINSL 301
Query: 297 DFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
D+P++ + + I + NL+VD+LY +DPR+R
Sbjct: 302 DYPLMQGIFLMVVIAVLAGNLVVDLLYGFLDPRIR 336
>gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1]
Length = 315
Score = 124 bits (308), Expect = 2e-27
Identities = 82/293 (27%), Positives = 138/293 (46%), Gaps = 25/293 (8%)
Query: 50 EAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAF 109
E + + LD+P D+Y + GL + + ++ KR V+ +L +
Sbjct: 36 EVLHAMAVKLRLDQPLLDRYWMWLSGLFVGDFGPSIHNIDIGAELVKRLGVSLRLLALGI 95
Query: 110 FFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYI---------FFV 160
++ + +I A+ + SW D ++ A+ +S P FWL + + F +
Sbjct: 96 VLAFLMAVAASVIGAVLQFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQELGFRL 155
Query: 161 KYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFV 220
Y AG+ P + ++ +L LP L G +R+
Sbjct: 156 LYTSGDGAGMTA-STPWDRVLLLIGVLA--------------LPTIALSMQACGKWSRYG 200
Query: 221 RNSFLEALSSDYVQFLKAKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETV 279
R + ++AL+S+YV+ +AKG+ + R+ H L+ +L P++TV+ +LG + +TETV
Sbjct: 201 RVALIDALNSEYVKLARAKGLSETRVVLAHGLRTSLAPMLTVVAAGGAVILGESVVTETV 260
Query: 280 FGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
F GMG V IQN D VV+ + +I + NLI DILYAV+DPR+RY
Sbjct: 261 FQWRGMGDLLVTGIQNNDVYVVLGWLLVAGLIIMVFNLIADILYAVLDPRIRY 313
>pir||A72537 probable oligopeptide transport permease protein APE1582 -
Aeropyrum pernix (strain K1) >gi|5105269|dbj|BAA80582.1|
(AP000062) 363aa long hypothetical oligopeptide
transport permease protein [Aeropyrum pernix]
Length = 363
Score = 124 bits (308), Expect = 2e-27
Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 16/236 (6%)
Query: 104 LAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYR 163
L + A IGI LG A K S D + +F ++ S P +W+ +M+ IF R
Sbjct: 132 LFLTATLITFAIGIILGFQMARKPGSIFDRGLSVFGMISWSFPTWWVAIIMILIFSFYLR 191
Query: 164 LTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHL--ARFWL-----PGFTLGFLGMGVT 216
L FP ++ + L + LF++ + A+ WL P T+ + G
Sbjct: 192 L--------FPAQAQYVYFELSKLPPDLPLFEKIVEQAKIWLKYMTMPVMTIVLVSFGGA 243
Query: 217 ARFVRNSFLEALSSDYVQFLKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPI 275
+ +RN L L D+V +A+G+P+ R IY H L+ + PIVT L L G GG I
Sbjct: 244 SYLIRNIVLGILQEDFVTAARARGLPERRVIYGHVLRTSSPPIVTYLALSIVGAFGGAII 303
Query: 276 TETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
TE VFG PGMG AIQ D V+VA T++ + ++ LI+D +Y+++DPRVR
Sbjct: 304 TEAVFGWPGMGLVYWIAIQQSDAKVLVASTWVLTVFFILTILILDFIYSLLDPRVR 359
>gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S77573
oligopeptide transport protein homolog ophB -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215732|gb|AAC44509.1| (AF242881) ophB
[Agrobacterium tumefaciens]
Length = 334
Score = 123 bits (307), Expect = 2e-27
Identities = 88/329 (26%), Positives = 156/329 (46%), Gaps = 26/329 (7%)
Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67
L++R+ + ++ ++ ++F+ + +P D A A G AT A+ +++ L+EP
Sbjct: 24 LLKRVAAGLGLLLVLSSLIFIGSTLLPGDAATAILG-RSATPAALAELRERLGLNEPLIV 82
Query: 68 QYVF----LIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
+Y+ + G + +++I+ R+ V IG R T LA + + + LG++S
Sbjct: 83 RYMSWLNAFVHGDLGSSLINGRS---VADSIGARLGNTLFLAASVALVAVPLAVFLGVLS 139
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183
R +D + + V+ P F++GYL++YI V F T +
Sbjct: 140 VRYRGRVLDRTIALVTRTFVALPEFFIGYLLIYILSVSLGW--------FASSSTVFARM 191
Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243
F + LP TL F+ G VR S L+ + +++ KGV
Sbjct: 192 G---------FADRVVAIALPCLTLVFVVTGHITTMVRASVLDVMERPFIEMAALKGVSH 242
Query: 244 MRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
+ +RHAL NAL PI+ V+ + L+ G + E +F PG+G Y V ++ N PVV
Sbjct: 243 GAVVWRHALPNALSPIINVVLVNLAYLVAGVVVVEVIFVYPGIGQYMVDSVVNRHVPVVQ 302
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331
A ++A +Y+ +NL D+L + +PR+R
Sbjct: 303 ATALLFAGVYIGLNLCADVLSVLANPRLR 331
>pir||F81699 peptide ABC transporter, permease protein TC0472 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190513|gb|AAF39320.1| (AE002315) peptide ABC
transporter, permease protein [Chlamydia muridarum]
Length = 314
Score = 123 bits (307), Expect = 2e-27
Identities = 88/332 (26%), Positives = 154/332 (45%), Gaps = 36/332 (10%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
++ +R+L + ++ V + F I IP DP G ++E + ++ K Y LD+P +
Sbjct: 4 YIKKRLLFNLLSLWVVVTLTFFIIRTIPGDPFND-ENGNVLSEEILAILNKRYGLDKPLF 62
Query: 67 DQYVFLIKGLIT-----NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121
QY+ +K L+T + I RT ++T P + L + + L GI LGI
Sbjct: 63 TQYLIYLKCLLTLDFGESLIYKDRTVIGIITTA---LPSSAILGLESLCLALFGGITLGI 119
Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181
++A + T+ +++ +S PAF +G + YIF +KY L IA F +
Sbjct: 120 LAAFYKRGCGRTIF-FSSIIQISVPAFVIGAFLQYIFAIKYSLLPIACWGDFSHTL---- 174
Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241
LP L M + S +L DYV AKG+
Sbjct: 175 ---------------------LPSIALAIAPMAFITQLTYASVSASLKKDYVLLAYAKGL 213
Query: 242 PKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300
+++ +H L AL P+++ L+ GT E +F +PG+G + + +I+ D+P+
Sbjct: 214 SPLKVLIKHVLPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPM 273
Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ ++ Y ++ I+L+ D+L A IDP++RY
Sbjct: 274 TLGLSVFYGAFFMLISLLCDLLQAWIDPQIRY 305
>emb|CAA10910.1| (AJ222649) sapB [Erwinia chrysanthemi]
Length = 313
Score = 123 bits (306), Expect = 3e-27
Identities = 76/254 (29%), Positives = 124/254 (47%), Gaps = 14/254 (5%)
Query: 82 IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALL 141
+ P+ + + P T +++++AF +L++GIPLGI + + ++ D ++ ALL
Sbjct: 57 VSSTNGQPISEQLREVLPATVEVSLLAFLLLLLVGIPLGITTGVMQHKAADRIISGLALL 116
Query: 142 GVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEP------ITHIPMIDALLRGNFELFK 195
G P FWL LM FF+ ++G P H P + ++
Sbjct: 117 GFLLPVFWLALLMTLFFFLHLGWLPVSGRFELLYPALMDAWFVHSPYREEMIASAI---- 172
Query: 196 QHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRIYR-HALKNA 254
QH+ LP L R +R S + + +Y++ +G+P+ + R H L NA
Sbjct: 173 QHMI---LPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNA 229
Query: 255 LVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVT 314
L PI+ LGLQF +L ITE VF PG+G + V AI+ DF + A + + +T
Sbjct: 230 LPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGGWLVNAIRQQDFAAISAGVMVVGALVIT 289
Query: 315 INLIVDILYAVIDP 328
IN++ DIL A+ +P
Sbjct: 290 INVLSDILGAMANP 303
>pir||C71545 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328605|gb|AAC67791.1| (AE001293)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 313
Score = 122 bits (302), Expect = 8e-27
Identities = 91/332 (27%), Positives = 152/332 (45%), Gaps = 36/332 (10%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
++ RR+L + ++ V + F I IP DP G + E + L+K Y LD+P +
Sbjct: 4 YIKRRLLFNLLSLWVVVTLTFFIIKTIPGDPFND-ENGNILSSETLALLKNRYGLDKPLF 62
Query: 67 DQYVFLIKGLIT-----NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121
QY+ +K L+T + I RT V++ I P + L + + L GI LGI
Sbjct: 63 TQYLIYLKCLLTLDFGESLIYKDRT---VISIIAAALPSSAILGLESLCLSLFGGITLGI 119
Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181
++A + S T+ +++ +S PAF +G + Y+F +KY IA
Sbjct: 120 LAAFYKKSCGRTIF-FSSVIQISVPAFVIGAFLQYVFAIKYSCLPIA------------- 165
Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241
GNF + LP L M + S L DYV AKG+
Sbjct: 166 -----CWGNF-------SHTLLPSIALAITPMAFITQLTCASVSANLKKDYVLLAYAKGL 213
Query: 242 PKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300
++ +H L AL P+++ L+ GT E +F +PG+G + + +I+ D+P+
Sbjct: 214 SPFKVLIKHILPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPI 273
Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ ++ Y ++ +L D+L A IDP++RY
Sbjct: 274 TLGLSVFYGAFFMLTSLCCDLLQAWIDPQIRY 305
>pir||C64676 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2314415|gb|AAD08295.1|
(AE000630) oligopeptide ABC transporter, permease
protein (oppB) [Helicobacter pylori 26695]
Length = 348
Score = 121 bits (300), Expect = 1e-26
Identities = 90/356 (25%), Positives = 160/356 (44%), Gaps = 44/356 (12%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPA---------------------KAWAGGE 45
++++R+L IPT++ + I F + P P +++ +
Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63
Query: 46 KATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGK-RFPVTFQL 104
+ +E +KK+Y D+P ++Y+ ++K + + + D+ K + PV+ L
Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISL 123
Query: 105 AIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRL 164
+ + I +I IPLGI A + N +D + + ++ + PAF L ++L +FF
Sbjct: 124 GLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAF-LFAVVLIVFFAGGNY 182
Query: 165 TTIAGVPPFPEPITHIPMIDALLRGNFELF------KQHLARFWLPGFTLGFLGMGVTAR 218
H + L+ NFE K +L LP + G
Sbjct: 183 W-------------HWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTL 229
Query: 219 FVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLL-GGTPIT 276
V+NSFL+ + YV KAKG RI Y H +NA++ +V F G+ + +
Sbjct: 230 LVKNSFLDEMGKLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLI 289
Query: 277 ETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
E VF L G+G ++I + D+PVV +I+ ++ + +LI D+L VIDPR+ +
Sbjct: 290 EIVFSLDGLGLLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRIDF 345
>pir||E72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980546|gb|AAD35154.1|AE001692_11 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 328
Score = 121 bits (300), Expect = 1e-26
Identities = 83/334 (24%), Positives = 160/334 (47%), Gaps = 18/334 (5%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA-----GGEKATKEAIELIKKMYHL 61
++ +R+L IP + ++++ F+I P D + GE + A+E++KK Y L
Sbjct: 4 YIAKRVLYAIPLLFVISIVSFIIIELPPGDYLTTYVMTLRQSGETIDQAALEVLKKRYGL 63
Query: 62 DEPWYDQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPL 119
D+P +Y + I +IT PV + +R T +++++ F + G +
Sbjct: 64 DKPVIVRYFYWIGNIITKGDFGYSFMWEKPVSDLLNQRVWWTILISVLSTAFAWVFGFLI 123
Query: 120 GIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITH 179
G+ S + S D V + +G++TP F L ++L+ FV ++ + G+ F
Sbjct: 124 GVYSGTHQYSIGDYVFTVLGYIGLATPNFLLALILLWFMFVTTGVS-LGGL--FSPEYAG 180
Query: 180 IPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239
P ++ F L W+P LG M R +R + L+ ++ YV +A+
Sbjct: 181 APW-------SWAKFVDLLKHIWIPVVVLGTGSMAGLIRVLRANLLDEINKPYVVAARAR 233
Query: 240 GVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298
GVP+ ++++ L+ A++P + G ++ G +T V LP +G+ + A+ + D
Sbjct: 234 GVPERELVWKYPLRVAVIPFASTAGWALPQIVSGAVVTGIVLNLPTVGTLLLDALTSQDM 293
Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ ++ I ++ + LI DIL A +DPR+R+
Sbjct: 294 YLAGSLVLILSVFTIIGTLISDILLAWLDPRIRF 327
>pir||B72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980801|gb|AAD35389.1|AE001712_2 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 121 bits (300), Expect = 1e-26
Identities = 95/346 (27%), Positives = 166/346 (47%), Gaps = 27/346 (7%)
Query: 1 MANLKKFLIRRILTFI-PTIIGVTLIVFLIAYKIPADPAKAWAGG----EKATKEAI--- 52
M +K +LI R++ ++ +IG+TL VFLI P DP + + T EA+
Sbjct: 1 MKFIKSYLIPRLIQYVYMVVIGITL-VFLIPRLSPVDPIEQILNTRLRIQNTTPEAVIKM 59
Query: 53 -ELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNP--VMTDIGKRFPVTFQLAIIAF 109
E+++++Y L ++QYV L K L+ P V++ I P T L +
Sbjct: 60 REVMEELYGLKGTLWEQYVNLWKRLLKGDFGPSMVYYPASVISLIRNSLPWTIGLLTLTT 119
Query: 110 FFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG 169
++G+ +G I + S+ ++ + P + +L +F + + + G
Sbjct: 120 LISWVLGLVIGAILGYYKESFGSKILTGILMAINPIPYYIFALTLLLLFCYVFPIFPLGG 179
Query: 170 VPPFPEPIT--HIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEA 227
+ I+ ++D + G L LGF G G+ + + + E
Sbjct: 180 GFSVGQKISLSWSFILDVIKHGTLPA---------LSLIILGFAGWGLGTKILVQNLRE- 229
Query: 228 LSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMG 286
DYV + + G+ +I + + L+NA++P VT LGL GG+ GG +TE +F PG+G
Sbjct: 230 --EDYVVYARMMGLRNSKILFSYVLRNAMLPQVTGLGLSLGGIFGGAMMTEILFTYPGIG 287
Query: 287 SYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
+ A A++ D+ V++A++F I T LI+D+LY +IDPR+RY
Sbjct: 288 TLAYNAVRANDYNVMIAISFFSIIAVATALLILDLLYPLIDPRIRY 333
>pir||C71841 probable peptide ABC transporter, ATP-binding protein -
Helicobacter pylori (strain J99)
>gi|4155769|gb|AAD06746.1| (AE001544) putative Peptide
ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 348
Score = 120 bits (298), Expect = 2e-26
Identities = 90/356 (25%), Positives = 159/356 (44%), Gaps = 44/356 (12%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPA---------------------KAWAGGE 45
++++R+L IPT++ + I F + P P +++ +
Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63
Query: 46 KATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGK-RFPVTFQL 104
+ +E +KK+Y D+P ++Y+ ++K + + + D+ K + PV+ L
Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISL 123
Query: 105 AIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRL 164
+ I +I IPLGI A + N +D + + ++ + PAF L ++L +FF
Sbjct: 124 GFFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAF-LFAVVLIVFFAGGNY 182
Query: 165 TTIAGVPPFPEPITHIPMIDALLRGNFELF------KQHLARFWLPGFTLGFLGMGVTAR 218
H + L+ NFE K +L LP + G
Sbjct: 183 W-------------HWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTL 229
Query: 219 FVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLL-GGTPIT 276
V+NSFL+ + YV KAKG RI Y H +NA++ +V F G+ + +
Sbjct: 230 LVKNSFLDEMGKLYVVSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLI 289
Query: 277 ETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
E VF L G+G ++I + D+PVV +I+ ++ + +LI D+L VIDPR+ +
Sbjct: 290 EIVFSLDGLGLLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRIDF 345
>pir||F83419 probable permease of ABC transporter PA1809 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947793|gb|AAG05198.1|AE004607_4 (AE004607) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 360
Score = 120 bits (298), Expect = 2e-26
Identities = 94/370 (25%), Positives = 166/370 (44%), Gaps = 61/370 (16%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK--------------------AWAGGEK 46
+++RR+L +PT+ G+ LI F+I P P + + GGE
Sbjct: 4 YILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDAASGGATGRISGGGGEV 63
Query: 47 AT------------KEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD- 93
A E ++ I++MY D+ ++++ ++K + + +TD
Sbjct: 64 AVAGSQYRGAQGLDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDL 123
Query: 94 IGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYL 153
I ++ PV+ L + + + ++ IPLGI A++ S D ++G + PAF L
Sbjct: 124 IIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAIL 183
Query: 154 MLYIFFVKYRLTTIAGVPP---FPEPITHIPMIDALLRGNFE---LFKQHLARFW---LP 204
++ +F AG FP + L NF+ L + L FW LP
Sbjct: 184 LVVLF---------AGGSYWDWFP--------LRGLTSNNFDQLSLGGKVLDYFWHLALP 226
Query: 205 GFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLG 263
L +NSFL+ + YV +AKG+ + R+ Y H +NA++ ++ L
Sbjct: 227 VTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLP 286
Query: 264 LQFGGL-LGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDIL 322
G+ G+ + E +F L G+G + +A N D+PVV FI+ + + + LI DI+
Sbjct: 287 AALLGIFFTGSLLIEVIFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIV 346
Query: 323 YAVIDPRVRY 332
Y ++DPR+ +
Sbjct: 347 YTLVDPRIDF 356
>pir||B71163 probable oligopeptide transport system permease protein AppB -
Pyrococcus horikoshii >gi|3256908|dbj|BAA29591.1|
(AP000002) 330aa long hypothetical oligopeptide
transport system permease protein AppB [Pyrococcus
horikoshii]
Length = 330
Score = 119 bits (295), Expect = 5e-26
Identities = 90/334 (26%), Positives = 162/334 (47%), Gaps = 24/334 (7%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK-----AWAGGEKATKEAIELIKKMYHL 61
+L R+I+ ++ T I + +L+ +P DP + A + + + +++Y L
Sbjct: 6 YLKRKIIVYVLTFIFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLRFYEQLYGL 65
Query: 62 DEPWYDQYV----FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGI 117
++P Y Q+V L KG + +I+ PV + P + + A +IG
Sbjct: 66 NKPLYVQFVNFWVALFKGDLGYSIL---YRAPVSRLLKNALPYDIAILLPAIVLSWLIGN 122
Query: 118 PLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI 177
LG + K + ++ +F L S P FW L++Y+ VK AG+ P+
Sbjct: 123 WLGAFAG-KNKKYDKYMMPLFYFLA-SMPYFWFAMLLVYLVGVK------AGILPYQGAY 174
Query: 178 THIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237
+ D + + + L + +P +L + +G A +RN + L +DYV++L+
Sbjct: 175 SP----DLIPTFSLKFVVDFLKHWIMPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLE 230
Query: 238 AKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297
A G + + +HA KNA++P +T L LQ G ++ G TE VF PG+G ++A + D
Sbjct: 231 ALGASEKLMTKHAYKNAILPQITGLALQLGLMVAGAIATEIVFNYPGVGVLLMKAAMSQD 290
Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ ++ + I + N ++DI+YA+IDPRVR
Sbjct: 291 YFLLQGGFLMIVISVLVANFVIDIVYALIDPRVR 324
>pir||E72107 peptide ABC transporter, permease protein CP0568 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376470|gb|AAD18352.1| (AE001606) Oligopeptide
Permease [Chlamydophila pneumoniae CWL029]
>gi|7189480|gb|AAF38387.1| (AE002215) peptide ABC
transporter, permease protein [Chlamydophila pneumoniae
AR39] >gi|8978572|dbj|BAA98409.1| (AP002545)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 314
Score = 119 bits (295), Expect = 5e-26
Identities = 87/333 (26%), Positives = 157/333 (47%), Gaps = 38/333 (11%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
++ RIL + ++ V + FL+ IP DP G ++E ++ +K Y LD+P Y
Sbjct: 4 YIKNRILFNLLSLWIVLTLTFLVMKTIPGDPFND-EGCNVLSEEVLQTLKSRYGLDKPLY 62
Query: 67 DQYVFLIKGLIT----NTII--DPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120
QY + + N+++ D + +N + T FP++ L + + F + GI LG
Sbjct: 63 QQYTQYLHSIAKLDFGNSLVYKDRKVTNIIST----AFPISAILGLQSLFLSIGGGIALG 118
Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180
I+ALK+ ++ ++L +S PAF L+ Y+F VK L IA F I
Sbjct: 119 TIAALKKKKQRRYILGA-SILQISIPAFIFATLLQYVFAVKIPLLPIACWGSFTHTI--- 174
Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240
LP L M + +S AL+ DYV AKG
Sbjct: 175 ----------------------LPTLALAVTPMAFIIQLTYSSVSAALNKDYVLLAYAKG 212
Query: 241 VPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299
+ +++ +H L A+ P ++ ++ GT E +F +PG+G + + +I+ D+P
Sbjct: 213 LSPLKVVIKHILPYAIFPTISYSAFLTTTVITGTFAIENIFCIPGLGKWFICSIKQRDYP 272
Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
V + ++ Y +++ +L+ D++ ++IDP++RY
Sbjct: 273 VALGLSVFYGTLFMLSSLLSDLIQSIIDPQIRY 305
>pir||C72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981749|gb|AAD36273.1|AE001776_9 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 334
Score = 119 bits (295), Expect = 5e-26
Identities = 100/345 (28%), Positives = 156/345 (44%), Gaps = 31/345 (8%)
Query: 4 LKKFLIRRILT-FIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA---------TKEAIE 53
+K +LI R+L FI T +G++ I FL +P DP K + +E +
Sbjct: 4 IKGYLIPRLLQYFIVTFLGLSAIFFLPRL-LPTDPVKQQLQQYQTFGVYIPPEQQEEMMR 62
Query: 54 LIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD--IGKRFPVTFQLAIIAFFF 111
++++Y L+ ++QY+ K L+T + PV I + P T L +
Sbjct: 63 TLRQLYGLEGTLWEQYLDFWKRLLTGDFGPSFSRFPVSVSKVISQALPWTVGLLSLTTIL 122
Query: 112 ILIIGIPLGIISALKRNSW---IDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIA 168
II + +G I R W +D VV I + A L Y+F
Sbjct: 123 SWIIAVIVGGIVGYYRKRWMEALDVVVMIIRPIPYYVMALICLILFAYVF---------- 172
Query: 169 GVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEAL 228
P FP ++ I L + E + LP TL +G+ + ++
Sbjct: 173 --PIFP--LSGGIGIGQKLSFDLETILSIVKHGTLPALTLMIVGIAWQFQSMKLIVQIVK 228
Query: 229 SSDYVQFLKAKGVP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGS 287
S D+V + K GV KM + H ++NA++P++T LGLQFGG+ G ITE VF PG+G
Sbjct: 229 SEDHVWYAKTAGVTEKMIVRNHVIRNAMLPMITQLGLQFGGIFSGALITEMVFAYPGIGW 288
Query: 288 YAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
AI D+ +++ V I I T L++D++Y + DPRVRY
Sbjct: 289 ILYDAIMKADYNLIMGVMCISTIAITTSILLLDLIYPLFDPRVRY 333
>pir||D72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981775|gb|AAD36297.1|AE001778_18 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 329
Score = 117 bits (290), Expect = 2e-25
Identities = 95/335 (28%), Positives = 158/335 (46%), Gaps = 20/335 (5%)
Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK----AWAGGEKATKEAIELIKKMY 59
++K+L ++IL +I T I + I +P +P +AG ++ K + +
Sbjct: 1 MRKYLTKKILIYILTFFFAVTIDWAIPRFMPGNPINFLISRFAGLPESVKVLQSYFTQAF 60
Query: 60 HLDEPWYDQYVFLIKGLITNT--IIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGI 117
LD+P ++QY+ K L I PV I + P + + + A IG
Sbjct: 61 GLDKPLWEQYINFWKALFRGDLGISIYMYPQPVAKVIARALPYSLIVLLPAVLLSFAIGN 120
Query: 118 PLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI 177
G A K+ +D ++P FW G L+ +IF V L +AG F I
Sbjct: 121 RFGAFVARKKR--LDNFALPVFYTLTASPYFWFGILLAWIFGVVIPLFPLAGAYSFG--I 176
Query: 178 THIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237
T D +L L + LP +L + +G A +RN + L ++Y ++L+
Sbjct: 177 TPSFSWDFIL--------DFLHHWVLPFGSLFLVMLGGWAIGMRNMIIYELEANYSRYLE 228
Query: 238 AKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297
A G + I ++A +NA++P +T L +Q G ++ G TE VF PG+G +Q I N D
Sbjct: 229 ALGSSQRLIRKYAYRNAILPQITGLAIQLGTVVAGALTTEIVFSYPGIGYILMQGILNQD 288
Query: 298 FPVVVAVTFIYAIIYVTI-NLIVDILYAVIDPRVR 331
+ ++ F++ I+ V + N +VDI Y +IDPR+R
Sbjct: 289 Y-FLIQGCFLFIILGVLLANFLVDIFYVIIDPRIR 322
>pir||H72420 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980560|gb|AAD35166.1|AE001694_2 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 335
Score = 115 bits (284), Expect = 1e-24
Identities = 97/349 (27%), Positives = 167/349 (47%), Gaps = 32/349 (9%)
Query: 1 MANLKKFLIRRILT-FIPTIIGVTLIVFLIAYKIPADPAKAWA------GGE---KATKE 50
M+ ++++L+ R++T F+ +G+T++ FL + +P+DP +A+ GG + +
Sbjct: 1 MSFVRRYLLPRLITYFLVVFVGLTIVFFLPRF-LPSDPIQAYIDRLITQGGNLNPEYFNK 59
Query: 51 AIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDP--RTSNPVMTDIGKRFPVTFQLAIIA 108
+E IK++Y L ++QYV K L+ + PVM I + P T L +
Sbjct: 60 LVETIKELYGLQGSLWNQYVNFWKRLLKGDFGPSYFQFPTPVMKLIRQSLPWTAWLLFVT 119
Query: 109 FFFILIIGIPLGIISA-LKRNSWI---DTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRL 164
IIG LG ++ W+ D + + + A L L+ YIF
Sbjct: 120 TVISWIIGNILGGLAGYFSDKKWVKILDGIAMVIRPMPYYILALGLLILLAYIF------ 173
Query: 165 TTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSF 224
P FP I I ++E L +LP +L +G+ + ++
Sbjct: 174 ------PIFP--IGGGFAIGMKFTFSWENLLILLKHAFLPALSLVLIGVFSWFQAMKLVV 225
Query: 225 LEALSSDYVQFLKAKGVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLP 283
+ DYV++ K GV + RI R + ++NA++P +T L L G + GG ITE VF P
Sbjct: 226 QSVKTEDYVKYAKMGGVEERRIVRRYVIRNAMLPQITGLALSLGQIFGGALITEIVFSYP 285
Query: 284 GMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
G+GS AI D+ +++ ++ + ++ T L++D+LY + DPRVRY
Sbjct: 286 GIGSLLYNAIFTGDYNLLMGISTLSILLVTTSILVIDLLYPLFDPRVRY 334
>pir||H75068 dipeptide abc transporter, permease protein (dppb) PAB1344 -
Pyrococcus abyssi (strain Orsay)
>gi|5458958|emb|CAB50445.1| (AJ248287) dipeptide ABC
transporter, permease protein (dppB) [Pyrococcus abyssi]
Length = 330
Score = 114 bits (282), Expect = 2e-24
Identities = 94/340 (27%), Positives = 161/340 (46%), Gaps = 32/340 (9%)
Query: 5 KKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK-----AWAGGEKATKEAIELIKKMY 59
K++L R+I+ + T + + +L+ +P DP + A + + ++ + +Y
Sbjct: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLY 63
Query: 60 HLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKR-FPVTFQLAIIAFFFILIIGIP 118
L++P Y Q++ K L+ + +++I K P + A IIG
Sbjct: 64 GLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123
Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG------VPP 172
LG ++ K + ++ +F L S P FW +++Y VK + G VP
Sbjct: 124 LGALAG-KNKKYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181
Query: 173 FPEPITHIPMIDALLRGNFELFKQHLARFW-LPGFTLGFLGMGVTARFVRNSFLEALSSD 231
F IT I +D L + W LP +L + +G A +RN + L +D
Sbjct: 182 FS--ITFI--VDFL-------------KHWILPFLSLFIVMIGSWAIGMRNMIIYELEAD 224
Query: 232 YVQFLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQ 291
YV++L+A G + + +HA +NA++P VT L LQ G ++ G TE VF PG+G +
Sbjct: 225 YVRYLEALGASEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMH 284
Query: 292 AIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
A + D+ ++ + I + N I+DI+YA+IDPRVR
Sbjct: 285 AALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324
>pir||D72059 peptide ABC transporter, permease protein, probable CP0150
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376893|gb|AAD18737.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189086|gb|AAF38032.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39]
Length = 493
Score = 109 bits (271), Expect = 4e-23
Identities = 79/252 (31%), Positives = 124/252 (48%), Gaps = 21/252 (8%)
Query: 90 VMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFW 149
V++++ KR + L+I+ ++ G+I ALKRN WID + L+ S P F
Sbjct: 247 VISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFV 306
Query: 150 LGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQH---------LAR 200
+L F + + P T IPM + LR E+F + ++
Sbjct: 307 AVPWILDNFVINKTI-----------PFTTIPMPYSGLRSPPEVFNELSTLGRIFDLVSH 355
Query: 201 FWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIV 259
+LP + + + +R R+ FLE LS D++ KA+G+ I Y+H KNA V IV
Sbjct: 356 GFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIV 415
Query: 260 TVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIV 319
T L G LLGG + ET+F + G G++ QAI N D VV+ + + + + L+
Sbjct: 416 TSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLG 475
Query: 320 DILYAVIDPRVR 331
DI Y ++DPRV+
Sbjct: 476 DICYVLLDPRVQ 487
>dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 493
Score = 109 bits (271), Expect = 4e-23
Identities = 79/252 (31%), Positives = 124/252 (48%), Gaps = 21/252 (8%)
Query: 90 VMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFW 149
V++++ KR + L+I+ ++ G+I ALKRN WID + L+ S P F
Sbjct: 247 VISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFV 306
Query: 150 LGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQH---------LAR 200
+L F + + P T IPM + LR E+F + ++
Sbjct: 307 AVPWILDNFVINKTI-----------PFTTIPMPYSGLRSPPEVFNELSTLGRIFDLVSH 355
Query: 201 FWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIV 259
+LP + + + +R R+ FLE LS D++ KA+G+ I Y+H KNA V IV
Sbjct: 356 GFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIV 415
Query: 260 TVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIV 319
T L G LLGG + ET+F + G G++ QAI N D VV+ + + + + L+
Sbjct: 416 TSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLG 475
Query: 320 DILYAVIDPRVR 331
DI Y ++DPRV+
Sbjct: 476 DICYVLLDPRVQ 487
>emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 500
Score = 109 bits (269), Expect = 6e-23
Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 27/230 (11%)
Query: 106 IIAFFFIL---IIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKY 162
+I FF ++ I+G+PLG+ A +N++ D +T F L + + +V
Sbjct: 286 VIGFFGVMFSHIVGLPLGLFMARFKNTYFDR-------FSTATMTFMLALPSIAVIYVVR 338
Query: 163 RLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRN 222
L + G+P PM+ A + LP LG L + T + R
Sbjct: 339 FLGGMVGLP------DSFPMLGA----------SDPKSYILPALILGILNIPTTVIWFRR 382
Query: 223 SFLEALSSDYVQFLKAKGVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFG 281
++ +SD+V+F ++KG+ + IYR H KNA+VPIV+ + +GG +TETVF
Sbjct: 383 YLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFA 442
Query: 282 LPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
PGMG + +I++ + ++V +TFI+ ++ + L+ DI+ ++DPR++
Sbjct: 443 FPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIK 492
>sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJB
>gi|7442459|pir||A64987 hypothetical 40.4 kD protein in
bcr 5' region - Escherichia coli (strain K-12)
>gi|1736843|dbj|BAA15986.1| (D90849) Oligopeptide
transport system permease protein OppB. [Escherichia
coli] >gi|1788504|gb|AAC75239.1| (AE000307) putative
transport system permease protein [Escherichia coli K12]
Length = 364
Score = 108 bits (268), Expect = 8e-23
Identities = 92/372 (24%), Positives = 153/372 (40%), Gaps = 60/372 (16%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKA-------------------------- 40
+LIRR+L IPT+ + I F I P P
Sbjct: 4 YLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHA 63
Query: 41 -----------WAGGEKATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPR-TSN 88
+ GG E I I Y D+P +++Y ++ I D S
Sbjct: 64 QTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSA 123
Query: 89 PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAF 148
V+T I PV+ L + + I ++ IPLGI A+ S D F ++G + PAF
Sbjct: 124 SVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPAF 183
Query: 149 WLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFK------QHLARFW 202
L ++L +FF + FP + L+ NF+ +L
Sbjct: 184 -LFAILLIVFFAGGSYFDL-----FP--------LRGLVSANFDSLPWYQKITDYLWHIT 229
Query: 203 LPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTV 261
LP G +NSFL+ + YV +AKGV + I ++H +NA++ ++
Sbjct: 230 LPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAG 289
Query: 262 LGLQFGGLL-GGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVD 320
F + G+ + E +F L G+G +A + D+PV+ +I+ +I + +N++ D
Sbjct: 290 FPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSD 349
Query: 321 ILYAVIDPRVRY 332
I Y ++DPR+ +
Sbjct: 350 ISYTLVDPRIDF 361
>gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB-1) [Sulfolobus
solfataricus]
Length = 348
Score = 108 bits (268), Expect = 8e-23
Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 20/292 (6%)
Query: 47 ATKEAIELIKKMYHLDEPWYDQYVFLIKGLI------TNTIIDPRTSNPVMTDIGKRFPV 100
A ++ E + Y L++P D+Y + L+ + P S V + I P
Sbjct: 67 AVEKYRESLIAAYGLNQPIIDKYFIQMYNLMRFDFGTAYFLQAPSGSREVSSIIAYYLPN 126
Query: 101 TFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFV 160
T L A ++ G +G++SA K W + V+ I A++ S P +WLG++++
Sbjct: 127 TILLFTTATIVFIVAGTIIGLLSA-KSKFW-EKVIAIIAVIHSSIPTWWLGFVLIAALAY 184
Query: 161 KYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFV 220
++ G+ P P + F+ L LP T+ + +G A V
Sbjct: 185 AVKVFPPGGMTSVPPP-----------KNPFDYGISVLYHMALPLITIFIVNVGGFAYIV 233
Query: 221 RNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETV 279
R+ + D+V KA+G+P RI YRH L++ I T L G LGG+ TE V
Sbjct: 234 RSLVTSIMKEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVV 293
Query: 280 FGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
F PG+G AI D PV++ +T++ I+ + + +++Y ++DPR++
Sbjct: 294 FEWPGVGLLTYVAITLNDLPVILGITYVLTIVLLLGLFLGELVYGLLDPRIK 345
>gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halobacterium sp.
NRC-1]
Length = 326
Score = 108 bits (267), Expect = 1e-22
Identities = 85/343 (24%), Positives = 150/343 (42%), Gaps = 34/343 (9%)
Query: 4 LKKFLIRRIL-TFIPTIIGVTLIVFLIAYKIPADPAKAW-----AGGEKATKEAIELIKK 57
+K ++++R+L TF+ I +TL L+ K+ +GG+ ++ E ++
Sbjct: 1 MKWYIVKRVLWTFVVMWIALTLTFGLLVASPDTGQTKSVMSCSASGGD--AQQCREQYRE 58
Query: 58 MYHLDEPWYDQYVFLIKGLIT-NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIG 116
+LD+P ++YV + + T N S VM I + +P T Q AI I+G
Sbjct: 59 RQNLDKPITERYVNYVTNMATLNWGWSESRSQSVMAAISEAWPYTAQYAIPVLVVSTILG 118
Query: 117 IPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEP 176
LG+ SA K + D + G+S P FW +++ +
Sbjct: 119 YGLGLYSAYKPYTKADYLGSFVGFFGISIPNFWFALVLIILLG----------------- 161
Query: 177 ITHIPMIDALLRGNFELFK-----QHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSD 231
TH I + + + ++ + +P F L + R+ R +E ++ +
Sbjct: 162 -THFEFISTYYQSGIPINQGWASMANITQLLIPSFVLLTASLAWQMRYSRAQAIEQMNQE 220
Query: 232 YVQFLKAKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLL-GGTPITETVFGLPGMGSYA 289
+V+ KAKG + R+ H + A VP+ T + G+ I E +F +PG+G
Sbjct: 221 FVKVAKAKGASQWRLMIHHVFRMAAVPLTTSFVSSLLAIFWSGSVIIEQIFSIPGLGLMT 280
Query: 290 VQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
AI D +V+A T I + + NLI D+ Y ++DPR+ Y
Sbjct: 281 FTAITEQDTTLVLATTMITVFLAIIGNLIEDVSYTILDPRIDY 323
>pir||H83388 probable permease of ABC transporter PA2059 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948067|gb|AAG05447.1|AE004632_6 (AE004632) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 357
Score = 107 bits (265), Expect = 2e-22
Identities = 81/357 (22%), Positives = 151/357 (41%), Gaps = 39/357 (10%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPA-----------------KAWAGGEKATK 49
+L+RR+ +PT++G+ LI F I P P + GG A +
Sbjct: 4 YLLRRLALILPTLLGILLINFAIVQAAPGGPVDQAIARLQGVDGGGPLGRGGEGGHGALE 63
Query: 50 -----------EAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD-IGKR 97
+ + +++ Y D+P + ++ + + + D I ++
Sbjct: 64 PQRHGETGIDPQLVAALERQYGFDKPPLQRLWLMLSSYARLDFGESFYRDARVIDLIAEK 123
Query: 98 FPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYI 157
PV+ L + A ++ IPLG+ A++ S D ++G + P F +++ +
Sbjct: 124 LPVSLSLGLWATLITYLVSIPLGVAKAVRHGSAFDLWSSALVVIGYAVPGFLFAIVLIVL 183
Query: 158 FFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTA 217
F L P+ + A G F +L LP +L G
Sbjct: 184 FAGGSYLDWF--------PLRGLASEGAERLGPLARFADYLWHLALPVGSLVVGGFASLT 235
Query: 218 RFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLL-GGTPI 275
+NSFL+ +S YV +AKG+ + R+ Y H +NA++ +V L + G+ +
Sbjct: 236 LLTKNSFLDEISRQYVATARAKGLSERRVLYGHVFRNAMLLVVAGLPAALVSVFFTGSLL 295
Query: 276 TETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
E +F L G+G +A D+PVV FI+ ++ + + L D+ Y+++DPR+ +
Sbjct: 296 IEVLFSLDGLGLMGYEAALGRDYPVVFGSLFIFTLLGLLVKLAGDLAYSLVDPRIDF 352
>pir||E82442 probable peptide ABC transporter, permease protein VCA0590
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9658001|gb|AAF96492.1| (AE004389) peptide ABC
transporter, permease protein, putative [Vibrio
cholerae]
Length = 360
Score = 107 bits (265), Expect = 2e-22
Identities = 84/368 (22%), Positives = 157/368 (41%), Gaps = 56/368 (15%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK--------------------------- 39
+++RR+L +PT+ + I F I P P +
Sbjct: 4 YILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEVAAP 63
Query: 40 ------AWAGGEKATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD 93
+ G + +E I + + D+P +++Y ++K T + + D
Sbjct: 64 TDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGDVID 123
Query: 94 -IGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGY 152
I +R PV+ L + + I +I IPLGI A+ S D ++G + P F
Sbjct: 124 LIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFLFAI 183
Query: 153 LMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFEL---FKQHLARFW---LPGF 206
+++ +F + FP + L+ NF ++Q L FW LP
Sbjct: 184 ILIILFASGNYFSW------FP--------LRGLVSDNFASLPWYQQVLDYFWHLTLPTL 229
Query: 207 TLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQ 265
+ G + +NSFL+ ++ YV +AKG+ + RI Y+H +NA++ I+
Sbjct: 230 AMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSA 289
Query: 266 FGGLL-GGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYA 324
F + G+ + E +F L G+G +A D+P+V + +I ++ + +++I D+ Y
Sbjct: 290 FISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYM 349
Query: 325 VIDPRVRY 332
+DPR+ +
Sbjct: 350 WVDPRIDF 357
>emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 315
Score = 105 bits (259), Expect = 9e-22
Identities = 82/320 (25%), Positives = 139/320 (42%), Gaps = 21/320 (6%)
Query: 15 FIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAI-ELIKKMYHLDEPWYDQYVFLI 73
++ ++ + +I F + +P DP K G + E + E ++ LD P Y+Q+ +
Sbjct: 11 YLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVMEELRAELGLDRPLYEQFASFV 70
Query: 74 KGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWID 132
++ + PV + R T + G LG ++ K
Sbjct: 71 SDILHLDLGYSYHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGALAGWKPEKRTS 130
Query: 133 TVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFE 192
V + ++ TP ++L L LYIF + L G PE I ++L
Sbjct: 131 RVTGLAFIVFSCTPPYFLALLSLYIFSFRLGLFPSKGFYDAPE-------IGSILH---- 179
Query: 193 LFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHAL 251
HL +LP + +R S ++ Y + +AKG+ + +RH L
Sbjct: 180 ----HL---FLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVL 232
Query: 252 KNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAII 311
KN+ +PI+T+L L FG L G E +F L GMG+ AI D+P++ + ++
Sbjct: 233 KNSSLPIITLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLT 292
Query: 312 YVTINLIVDILYAVIDPRVR 331
+ N++ D+LYA+IDPRVR
Sbjct: 293 ALLANMLADLLYALIDPRVR 312
>emb|CAA68074.1| (X99740) oligopeptide transport system permease protein homolog
[Mycoplasma hominis]
Length = 381
Score = 104 bits (257), Expect = 2e-21
Identities = 83/358 (23%), Positives = 163/358 (45%), Gaps = 50/358 (13%)
Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGE-KATKEA----------I 52
+ K++++RI I T+ +++ V+++ +P A + +A+K++ +
Sbjct: 1 MTKYILQRIAFAILTLFIISIFVYVLVAAFGNNPVNDLAQAQFQASKKSGLTYTEILHKL 60
Query: 53 ELIKKMYHLDEP--------WYDQYVFLIK-----GLITNTIIDPRTSNPVMTDIGKRFP 99
E+ + + D P Y Y+ I G + N +P ++ + T++ K F
Sbjct: 61 EIENGLRYKDNPDVLVPIIVRYGNYMKNIFTKGDFGFLYNPANNPNSA--LYTNMAKLFF 118
Query: 100 VTFQLAII----AFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLML 155
Q ++I FF I+GI +G+I+ KR W D +F L+ V+ P+F L +++
Sbjct: 119 TPLQYSLIITVPTFFISSILGIAIGVIAGYKRGKWFDVSSNVFVLIFVAIPSFILAPIVI 178
Query: 156 YIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGV 215
I I+ V P P + F + P F + +
Sbjct: 179 TISVA----LGISSVVPRPGE---------------QSFGVMFVSYLPPIFVMSITSLAG 219
Query: 216 TARFVRNSFLEALSSDYVQFLKAKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTP 274
+ RN + L+S++V K KG+ +I+ ++ L+N +P+ +++ F GLL G+
Sbjct: 220 YVTYTRNQVITVLTSNFVLIAKTKGLSSSQIFFKYVLRNISIPLFSLVFGSFIGLLSGSI 279
Query: 275 ITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332
I E + +PG V A + VV+ T + I + ++I+D+ YA++DP+++Y
Sbjct: 280 IIEQYWQVPGTSQIIVNAFPTGEINVVMFSTLFFTFISLIADIIIDVSYAILDPKIKY 337
>pir||E81253 probable peptide ABC-transport system permease protein Cj1583c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6969000|emb|CAB73571.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 314
Score = 103 bits (254), Expect = 3e-21
Identities = 81/330 (24%), Positives = 150/330 (44%), Gaps = 24/330 (7%)
Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA-TKEAIELIKKMYHLD 62
LK+ + + F T + L+ F + + A+A G + +KE ++ I++ LD
Sbjct: 2 LKRLVFSIFIAFFSTFLCFVLLHF-------SKGSIAYANGVNSQSKEFVQRIEQNLGLD 54
Query: 63 EPWYDQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121
+P +QY ++L K L + + + V+ I +R TF L A + ++ + L +
Sbjct: 55 KPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSALMLLFLLSVFLAL 114
Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181
+ + S+ID ++ A + P F L L + IF + +++ + G +
Sbjct: 115 LGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPVMGSSDIGFEDDFLN 174
Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241
++ L+ L HLA F R RN E+ S ++Q L A+ +
Sbjct: 175 RLEHLILPVLVLVLSHLALF---------------LRIARNFINESFSQIFIQNLYARAL 219
Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301
+ IY LK +L PIV G + GT + E+VF G+GS ++I D+P+V
Sbjct: 220 REKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIFKDYPIV 279
Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+A+ F ++ + DI+ +++PR+R
Sbjct: 280 LALIFFSVLLAAFFTFLSDIVARILNPRLR 309
>emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related protein [Thermoplasma
acidophilum]
Length = 331
Score = 101 bits (248), Expect = 2e-20
Identities = 88/333 (26%), Positives = 156/333 (46%), Gaps = 23/333 (6%)
Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIEL-IKKMYHLDEPWY 66
+ R+I+ + II V +I++++ +P P + G K E ++ I+K L +
Sbjct: 12 ITRKIIQDVVLIIFVVVILYVVFRIMPGSPVDLFLHGLKHPTEQEKITIEKQLGLYGGKF 71
Query: 67 DQYVFLI--KGLIT-NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
FLI + + T N D T V+ I + P T L A IGIPLGI +
Sbjct: 72 SLTNFLIYLRDMFTFNFGEDYYTGQSVIFVIKQALPYTLLLFGSAAVISFAIGIPLGIYT 131
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE----PITH 179
+ KR ++ G+ T + L + ++F + + + + FP PI++
Sbjct: 132 SFKRGKKSES--------GIITASTLLNSIPFFVFAIIFFVYLAGDLHIFPLRSIFPISY 183
Query: 180 IPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239
I + L+ + EL +LA +P L + +R + + L D++ +AK
Sbjct: 184 I--VHPTLK-SIELILYYLA---MPIIVLVIVEAAGHLLTMRAAMVSVLGEDFITTARAK 237
Query: 240 GVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298
GV + I + HA +NA++P+ T + L+F L+ G I E +F + GMG+ A D+
Sbjct: 238 GVSERGIMFHHAARNAMIPVSTRMALEFAFLMSGAVIVEVIFSIHGMGTVLYDATLQEDY 297
Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
PV F+ +II + +D ++A +DPR++
Sbjct: 298 PVSEGALFVISIIVILAYSAIDFIHAWLDPRIK 330
>dbj|BAB13783.1| (AB038238) NikB [Vibrio parahaemolyticus]
Length = 320
Score = 98.3 bits (241), Expect = 1e-19
Identities = 81/326 (24%), Positives = 149/326 (44%), Gaps = 24/326 (7%)
Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67
L+R L + T++G+ L+V P DP + GG + + E + H+
Sbjct: 9 LLRTFLLLVVTVMGIVLLVS----HSPTDPVNEFLGGNVFSVSS-EQRDNIAHILGTNMS 63
Query: 68 QYVFLIKGLITNTIIDPRTSN----PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123
+ L L+ T + SN PV + +R + L I ++ L G LG+++
Sbjct: 64 ELDRLTDWLVQMTHGEWGYSNYYQQPVSDVLKERSGNSLNLLIFSWSLTLCFGYALGLVA 123
Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183
LK S + + + + P+FW+G +++ IF +K + G T + ++
Sbjct: 124 GLKNKSTLGKCLYYGSWILSCLPSFWVGIILIAIFALKLHWFPVGGA-------TSLSIV 176
Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243
++ +GN QH+ LP L +G+G + + L SDYV++ + +PK
Sbjct: 177 NSTWQGNL----QHMI---LPIVCLVLVGIGPLILHTKEKVVSLLDSDYVKYAQMHQIPK 229
Query: 244 MR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
R I ++ +K +LVP VT+ F LLG + E+VF PG+G+ V + D +++
Sbjct: 230 KRLICQYLIKGSLVPTVTLHFAAFAELLGNAVLIESVFNYPGLGNAFVYSGLTKDSHLLL 289
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDP 328
A++ ++ T N +I+ + P
Sbjct: 290 ALSLCTTLMIATGNAFANIIQRISQP 315
>gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 323
Score = 97.5 bits (239), Expect = 2e-19
Identities = 78/329 (23%), Positives = 137/329 (40%), Gaps = 23/329 (6%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGE--KATKEAIELIKKMYHLDE 63
K L I ++ V F++ P DP +A+ G + E I + LD+
Sbjct: 2 KLFFSHFLRLIILLVLVAAGTFILLSFSPVDPIRAYIGNDLLHVPPEQYARIAARWGLDQ 61
Query: 64 PWYDQYVFLIKGLITNTIIDPRTSN-PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122
P ++++ L+ + N PV + I +RF +F L A+ ++G+ LG +
Sbjct: 62 PLWERFGHWFWRLLQGDMGYSMLFNMPVASVIRERFATSFALLAGAWLLSGVLGVTLGFL 121
Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182
+ + W D ++ + L S P FW+ L + P+ +P+
Sbjct: 122 AGRFLHRWPDKMICRISYLLSSLPTFWIAMLSGAVC----------------RPLAVLPV 165
Query: 183 IDALLRGN---FELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239
A GN L + L LP L LGMG A R + S++++F +A+
Sbjct: 166 CCAWDPGNNAGTALLSERLRHLVLPVCALSLLGMGQIALHTREKIASVMKSEFIRFARAQ 225
Query: 240 GVPKMRIYRH-ALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298
G + RH L++A+ P + + G L+GG + E VF PG+G + A D
Sbjct: 226 GDKGWSLLRHQVLRHAITPALCLQFASLGELMGGALLAEKVFAYPGLGQATIDAGLRGDV 285
Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVID 327
P+++ + ++ N I L V++
Sbjct: 286 PLLMGIVLFCTLLVFAGNTISAWLVVVLN 314
>gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 342
Score = 95.2 bits (233), Expect = 1e-18
Identities = 87/343 (25%), Positives = 146/343 (42%), Gaps = 30/343 (8%)
Query: 5 KKFLIRR-ILTFIPTIIGVTLIVFLIAYKIPADPAKA-------WAG---GEKATKEAIE 53
+ FLI+R I I +G+T I F++ IP + AG G+ +E
Sbjct: 3 RDFLIKRGIYYIIVWFVGIT-IDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQI 61
Query: 54 LIKKM--YHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVM--TDIGKRFPVTFQLAIIAF 109
L++++ +P Y QY +K ++T T PV T I + P TF + I A
Sbjct: 62 LVQQLGLAQYQQPLYIQYFNYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPAI 121
Query: 110 FFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG 169
IG LG ++AL R D + + + P F G +++ + + + G
Sbjct: 122 VASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVFVTGEILIEVLAIDLHIFPTGG 181
Query: 170 ---VPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLE 226
F +P +P I +++ LP TL + +RN+ +
Sbjct: 182 QYNTFQFLKPTMSLPFIWSVIYHAI-----------LPTLTLILFSLAGWIMGMRNNMIP 230
Query: 227 ALSSDYVQFLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMG 286
L DY+ + + GV + + A + AL+P T + G + G E +F G+G
Sbjct: 231 ILQEDYMNYYRLMGVSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLG 290
Query: 287 SYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPR 329
+ QAI LD+P++ + F+ V N + DI+Y +IDPR
Sbjct: 291 YFFNQAITGLDYPLLSGIFFMLVTAMVLSNFVADIIYTIIDPR 333
>gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
Length = 322
Score = 94.8 bits (232), Expect = 1e-18
Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 20/329 (6%)
Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66
F++ + +P ++ + + +I+ + A AG E +L PWY
Sbjct: 5 FVVITVNFILPRLMPGSALAVVISLIEGQNGVAATAGSSAIALEVSQLEAAFGLTPAPWY 64
Query: 67 DQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124
QY I+G+ T + T PV++ I P T L ++ +G LG I+
Sbjct: 65 VQYAHYIQGIFTLNLGASITYYPTPVLSIILSGLPWTLFLVVVGAIIAFFLGSYLGSIAG 124
Query: 125 LKRNSWIDTVVRIFALLGVSTPAFW-LGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183
R S D V+ I + + P+F L YL +++ V++ + I+ FP I P
Sbjct: 125 FNRRSRKDLVILIITSILAALPSFVILMYLEMWLS-VQHGIFLIS----FPSKINTSP-- 177
Query: 184 DALLRGNFELFKQHLARFW-LPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242
++++ L+RF+ LP L F + +RN+ L + +YV + + G+
Sbjct: 178 NSIMA---------LSRFYTLPIIALMFTSLSGFVLGMRNNMLHTIRDNYVTYAEILGLD 228
Query: 243 KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302
RI + KN+L+P +T + G + + E + PG+G + A+ + D P++
Sbjct: 229 HNRIRKMVYKNSLLPNITAFAIILGLAISQSLTVEGLLTTPGVGFFFGLALTSKDLPLLQ 288
Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ AI+ + IV+ +Y ++DPR R
Sbjct: 289 GIFLFIAIMLILSIAIVEAIYTILDPRAR 317
>gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhodococcus fascians]
Length = 714
Score = 92.4 bits (226), Expect = 7e-18
Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 22 VTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYDQYVFLIKGLIT--- 78
++ +VF + +P DPA AGG+ A+ IE I++ +L++P+ QY + G +
Sbjct: 1 MSFLVFSLVALVPGDPAATLAGGDSASPATIEQIRQELNLNDPFLVQYKDWLVGAVQFDF 60
Query: 79 -NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRI 137
N++ T PV ++ +R PVT LA+ F ++ + +G+I L+ N+++D V++
Sbjct: 61 GNSLY---TQQPVAEELAQRLPVTLSLAVAVFILVIPFSVIIGVIGGLRPNAFVDRVLQF 117
Query: 138 FALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE 175
L VS P FW+ +++ IF V + G PF +
Sbjct: 118 LTSLAVSMPPFWVALVLISIFAVNLGVLPAYGFSPFTD 155
>gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 333
Score = 87.0 bits (212), Expect = 3e-16
Identities = 79/337 (23%), Positives = 139/337 (40%), Gaps = 22/337 (6%)
Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPA---------KAWAGGEKATKEAIELIK 56
K+LIRR+ + I I +I + + P PA + +A + I+ +
Sbjct: 4 KWLIRRLASVIIAIFVTIVISWALLEFSPYSPANYIMQFINPQDFAQKPELYASLIDYLN 63
Query: 57 KMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIG 116
+ P + ++ L N ++ PV I P T + + + +G
Sbjct: 64 TLRPHGNPLINAVNYIWNTLHGNLGFSIISNVPVAELIAVALPWTLFIVVTSILISFFLG 123
Query: 117 IPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFP-E 175
I LG R + D+V + + S P + L++YI Y + G
Sbjct: 124 IRLGQKLGYLRGTKTDSVATVSLSILRSVPIYIYAVLLIYILAFIYHIFPTGGAYSIHVT 183
Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235
P ++P I ++L F LP TL + + +R + + L D+V F
Sbjct: 184 PGFNLPFIASVLYHAF-----------LPILTLTIVNLVGWILQMRANTIYVLGEDFVNF 232
Query: 236 LKAKGVPKMRIYRHAL-KNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294
+ GV K I + + KNA++P+ T L + G G+ E F PG+G+ + +I
Sbjct: 233 AEISGVKKDIIEKKYIGKNAILPLYTSLIISIGFSFSGSVFVEQTFSYPGVGNLLINSIT 292
Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331
+ D+P + V I + + NLI D+ Y+ +DPR +
Sbjct: 293 SNDYPTEMGVFIIIIVAVIVGNLIADLTYSFLDPRAK 329
>emb|CAC17495.1| (AL450432) putative metal transport integral membrane protein
[Streptomyces coelicolor]
Length = 316
Score = 85.0 bits (207), Expect = 1e-15
Identities = 80/329 (24%), Positives = 132/329 (39%), Gaps = 21/329 (6%)
Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLD 62
NL F RR+ + ++ ++ VF +P D A AG + + + E ++ LD
Sbjct: 2 NLLAFAARRLAEAVVLLVLLSAAVFAATAVLPGDAVSAVAGVDASETQRAE-VRAELGLD 60
Query: 63 EPWYDQYVFLIKGLITNTIIDPRTSN-PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121
P +Y G + + PV + R P + LA + + LG+
Sbjct: 61 RPAVQRYADWAAGAVRGDLGRGFVGERPVADVLTTRLPNSLLLAGLTLAVTAPLATLLGL 120
Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181
+ L R D VV A + + P F + L++ + V + V P +P
Sbjct: 121 WTGL-RGGVADRVVSTSAQILAAVPEFVVAALLVAVLAVWLEVLPRVSVIPLGGTPLDVP 179
Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241
DAL+ LP TL +G+ V R +R S + + Y + + GV
Sbjct: 180 --DALV---------------LPVLTLSAVGLAVATRLLRASVADTAARPYCEAARLNGV 222
Query: 242 PKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300
+R+ RH L NA P V L L G L+G + E VF PG+G A+ D P+
Sbjct: 223 RGVRLAVRHILPNAAGPAVQALTLTTGALVGSAVVVENVFDYPGIGRELQLAVAARDVPM 282
Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPR 329
V + + + + L+ D+ ++ R
Sbjct: 283 VQGIATALVAVMLAVLLLGDVCARLLGAR 311
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.148 0.452
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122499824
Number of Sequences: 2977
Number of extensions: 5290908
Number of successful extensions: 20648
Number of sequences better than 1.0e-10: 136
Number of HSP's better than 0.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 20175
Number of HSP's gapped (non-prelim): 172
length of query: 332
length of database: 189,106,746
effective HSP length: 50
effective length of query: 282
effective length of database: 159,182,396
effective search space: 44889435672
effective search space used: 44889435672
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)