BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB1872 (dppB-2) DE:dipeptide ABC transporter, permease protein (dppB) (332 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||B75118 dipeptide abc transporter, permease protein (dppb) P... 666 0.0 pir||D71014 probable dipeptide transport system permease protein... 633 e-180 pir||B72617 probable dipeptide transport system permease protein... 380 e-104 pir||G71951 dipeptide transport system permease protein - Helico... 256 4e-67 pir||C64557 dipeptide ABC transporter, permease protein - Helico... 252 3e-66 sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 250 1e-65 sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 249 5e-65 pir||A72289 oligopeptide ABC transporter, permease protein - The... 233 2e-60 dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) ... 233 3e-60 gi|11499357 dipeptide ABC transporter, permease protein (dppB) [... 230 2e-59 sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 227 2e-58 pir||F75454 peptide ABC transporter, permease protein - Deinococ... 224 9e-58 dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permeas... 223 3e-57 sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 217 1e-55 sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 211 1e-53 pir||C83082 probable permease of ABC transporter PA4503 [importe... 209 4e-53 pir||F72720 probable oligopeptide transport system permease prot... 206 4e-52 gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; Dp... 205 9e-52 pir||F72451 probable peptide transport system permease protein A... 196 4e-49 pir||D75202 dipeptide abc transporter, dipeptide-binding protein... 192 6e-48 pir||B70789 probable peptidetransport system permease - Mycobact... 191 1e-47 emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter... 189 6e-47 sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 188 1e-46 pir||B72367 oligopeptide ABC transporter, permease protein - The... 187 2e-46 gi|10954943 Probable accD [Agrobacterium tumefaciens] >gi|649829... 187 2e-46 sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 186 3e-46 gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-... 186 4e-46 sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 184 1e-45 dbj|BAB04287.1| (AP001509) nickel transport system (permease) [B... 184 1e-45 pir||F72371 oligopeptide ABC transporter, permease protein - The... 183 2e-45 pir||S47696 nickel transport system permease protein nikB - Esch... 183 3e-45 emb|CAC05748.1| (AL391751) putative peptide transport system int... 181 9e-45 dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [O... 178 8e-44 gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T... 177 1e-43 pir||T34758 oligopeptide transport system integral membrane prot... 177 2e-43 pir||E70343 transporter (OppBC family) - Aquifex aeolicus >gi|29... 176 2e-43 sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 175 9e-43 sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 174 1e-42 gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T... 173 2e-42 pir||T03433 probable transport protein accD - Agrobacterium tume... 173 2e-42 pir||B38447 oligopeptide permease oppB homolog - Bacillus subtil... 173 3e-42 dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permeas... 172 5e-42 pir||C82242 oligopeptide ABC transporter, permease protein VC109... 172 6e-42 emb|CAC11408.1| (AL445063) dipeptide transport system permease p... 171 1e-41 dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Ba... 169 4e-41 gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [... 168 1e-40 pir||C70141 oligopeptide ABC transporter, permease protein (oppB... 167 2e-40 pir||F72215 oligopeptide ABC transporter, permease protein - The... 165 8e-40 sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 164 1e-39 pir||F75529 probable peptide ABC transporter, permease protein -... 164 1e-39 pir||B75381 peptide ABC transporter, permease protein - Deinococ... 163 2e-39 dbj|BAA14776.1| (D90763) Oligopeptide transport system permease ... 162 4e-39 pir||C71130 probable oligopeptide transport permease protein APP... 162 5e-39 sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 162 7e-39 dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permeas... 161 9e-39 sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 160 2e-38 pir||S77118 oligopeptide transport system permease protein appB ... 159 5e-38 pir||H72428 oligopeptide ABC transporter, permease protein - The... 155 9e-37 gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola] 154 1e-36 gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis] 154 2e-36 gb|AAC69838.1| (AF076683) oligopeptide transporter putative memb... 153 2e-36 gb|AAC67218.1| (U78968) transmembrane transport protein DppB [St... 153 3e-36 gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis] 153 3e-36 emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.] 152 6e-36 sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 151 1e-35 sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 149 4e-35 gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis] 149 5e-35 sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 147 1e-34 pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC... 146 4e-34 pir||D75573 peptide ABC transporter, permease protein - Deinococ... 144 1e-33 pir||B82356 peptide ABC transporter, permease protein VC0172 [im... 144 1e-33 dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permeas... 143 3e-33 gi|10954708 hypothetical ABC-transporter gene~similar to agaB ge... 142 7e-33 dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus] 141 1e-32 sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 139 4e-32 pir||A75142 oligopeptide transport system permease protein appb ... 138 7e-32 pir||A71212 probable oligopeptide transport system permease prot... 132 6e-30 pir||C82170 peptide ABC transporter, permease protein VC1681 [im... 132 7e-30 pir||T35939 probable transport permease protein - Streptomyces c... 131 1e-29 pir||A75027 oligopeptide transport permease protein appb PAB1194... 129 5e-29 sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 128 8e-29 gb|AAC69843.1| (AF076684) oligopeptide transporter putative memb... 128 8e-29 gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB... 127 1e-28 pir||E72300 oligopeptide ABC transporter, permease protein - The... 127 2e-28 emb|CAC12449.1| (AL445067) dipeptide transport system, permease ... 126 4e-28 gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1] 124 2e-27 pir||A72537 probable oligopeptide transport permease protein APE... 124 2e-27 gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S7... 123 2e-27 pir||F81699 peptide ABC transporter, permease protein TC0472 [im... 123 2e-27 emb|CAA10910.1| (AJ222649) sapB [Erwinia chrysanthemi] 123 3e-27 pir||C71545 probable oligopeptide permease - Chlamydia trachomat... 122 8e-27 pir||C64676 oligopeptide ABC transporter, permease protein - Hel... 121 1e-26 pir||E72424 oligopeptide ABC transporter, permease protein - The... 121 1e-26 pir||B72393 oligopeptide ABC transporter, permease protein - The... 121 1e-26 pir||C71841 probable peptide ABC transporter, ATP-binding protei... 120 2e-26 pir||F83419 probable permease of ABC transporter PA1809 [importe... 120 2e-26 pir||B71163 probable oligopeptide transport system permease prot... 119 5e-26 pir||E72107 peptide ABC transporter, permease protein CP0568 [im... 119 5e-26 pir||C72284 oligopeptide ABC transporter, permease protein - The... 119 5e-26 pir||D72282 oligopeptide ABC transporter, permease protein - The... 117 2e-25 pir||H72420 oligopeptide ABC transporter, permease protein - The... 115 1e-24 pir||H75068 dipeptide abc transporter, permease protein (dppb) P... 114 2e-24 pir||D72059 peptide ABC transporter, permease protein, probable ... 109 4e-23 dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila ... 109 4e-23 emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyo... 109 6e-23 sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 108 8e-23 gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB... 108 8e-23 gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halob... 108 1e-22 pir||H83388 probable permease of ABC transporter PA2059 [importe... 107 2e-22 pir||E82442 probable peptide ABC transporter, permease protein V... 107 2e-22 emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methan... 105 9e-22 emb|CAA68074.1| (X99740) oligopeptide transport system permease ... 104 2e-21 pir||E81253 probable peptide ABC-transport system permease prote... 103 3e-21 emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related prote... 101 2e-20 dbj|BAB13783.1| (AB038238) NikB [Vibrio parahaemolyticus] 98 1e-19 gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonel... 98 2e-19 gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus] 95 1e-18 gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus sol... 95 1e-18 gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhod... 92 7e-18 gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus sol... 87 3e-16 emb|CAC17495.1| (AL450432) putative metal transport integral mem... 85 1e-15 >pir||B75118 dipeptide abc transporter, permease protein (dppb) PAB1872 - Pyrococcus abyssi (strain Orsay) >gi|5458170|emb|CAB49659.1| (AJ248285) dipeptide ABC transporter, permease protein (dppB) [Pyrococcus abyssi] Length = 332 Score = 666 bits (1701), Expect = 0.0 Identities = 332/332 (100%), Positives = 332/332 (100%) Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH Sbjct: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60 Query: 61 LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG Sbjct: 61 LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI Sbjct: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG Sbjct: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 Query: 241 VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300 VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV Sbjct: 241 VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300 Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY Sbjct: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 >pir||D71014 probable dipeptide transport system permease protein dppB - Pyrococcus horikoshii >gi|3257833|dbj|BAA30516.1| (AP000006) 332aa long hypothetical dipeptide transport system permease protein dppB [Pyrococcus horikoshii] Length = 332 Score = 633 bits (1614), Expect = e-180 Identities = 305/332 (91%), Positives = 325/332 (97%) Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60 MANLKKFLIRR+LTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKAT++AIELIKKMYH Sbjct: 1 MANLKKFLIRRLLTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATQQAIELIKKMYH 60 Query: 61 LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 LD PWYDQYVFLIKGLI NTIIDPRTSNP+M D+GKRFPVT QLAIIAF FILIIGIPLG Sbjct: 61 LDRPWYDQYVFLIKGLIANTIIDPRTSNPIMYDVGKRFPVTLQLAIIAFIFILIIGIPLG 120 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 IISALKRN+W+DTVVRIFALLGVSTPAFWLGYLM+YIFFVKY++TTIAGVPP P+PIT++ Sbjct: 121 IISALKRNTWVDTVVRIFALLGVSTPAFWLGYLMIYIFFVKYKVTTIAGVPPMPKPITYV 180 Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 PMIDALLRGNF+LFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYV FLKAKG Sbjct: 181 PMIDALLRGNFDLFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVLFLKAKG 240 Query: 241 VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300 VPKMR+YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQ+IQNLDFPV Sbjct: 241 VPKMRVYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQSIQNLDFPV 300 Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 V+A+TFIYAIIYVTINLIVD+LYA+IDPRVRY Sbjct: 301 VIAITFIYAIIYVTINLIVDVLYAIIDPRVRY 332 >pir||B72617 probable dipeptide transport system permease protein APE1395 - Aeropyrum pernix (strain K1) >gi|5105078|dbj|BAA80392.1| (AP000061) 336aa long hypothetical dipeptide transport system permease protein [Aeropyrum pernix] Length = 336 Score = 380 bits (965), Expect = e-104 Identities = 178/332 (53%), Positives = 245/332 (73%) Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60 ++NL +FL+RR+LTFIPT++GVT + FLIA +P +PAK WAGGEKA+ E +E I + Y Sbjct: 5 VSNLTRFLVRRLLTFIPTLVGVTFVTFLIATVVPGNPAKLWAGGEKASPEVVEQIVREYR 64 Query: 61 LDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 LD P+++QY F + L+TNT+I P TSN V I +R PVT QL ++AF FI+++GIPLG Sbjct: 65 LDRPFWEQYFFFMYKLLTNTMISPVTSNYVWDMIVERLPVTIQLTLLAFVFIILLGIPLG 124 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 IISAL R++ ID +RI AL+G+S P FWL YL++++F+ KYRL T+AG P P IT I Sbjct: 125 IISALTRDTIIDAAIRIMALVGISVPIFWLAYLLIFVFYTKYRLITLAGTPEPPYSITGI 184 Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 P+ID+++ + F+ L R+ +P FTL + +G AR VRNSFL+A+S DYV+F+ A+G Sbjct: 185 PLIDSIIMLDAATFEDVLRRYTIPAFTLAYPSIGFVARLVRNSFLDAMSGDYVEFMDARG 244 Query: 241 VPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300 +P YRH L+N+ +PIVTVLGL FGGLL G PITET+FGLPG+G + + +I N D+ Sbjct: 245 LPSTWKYRHILRNSSIPIVTVLGLIFGGLLTGAPITETIFGLPGLGKFLLDSINNYDYLS 304 Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 ++ IIY+T+NL+VDI YA+IDPRVRY Sbjct: 305 LMGGVLFVGIIYLTVNLLVDITYAIIDPRVRY 336 >pir||G71951 dipeptide transport system permease protein - Helicobacter pylori (strain J99) >gi|4154809|gb|AAD05865.1| (AE001465) DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter pylori J99] Length = 334 Score = 256 bits (646), Expect = 4e-67 Identities = 133/330 (40%), Positives = 201/330 (60%), Gaps = 6/330 (1%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F+I+RIL IPT+ GV++IVF++ + +P DPA G EKA + AI+ +++ + L++P Sbjct: 4 FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILG-EKANQAAIDALREQFGLNKPLI 62 Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 +QY F I ++ T PVM + +RFP T +LA+IA F L++GI +G+++A+ Sbjct: 63 EQYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLAAI 122 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPP---FPEPITHIPM 182 KR S D FAL G+S P FWLG +++YIF V+ + G + + T + + Sbjct: 123 KRYSMFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGLYL 182 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 ID+L+ G++ F + LP L + V AR R S E DYV+ KAKG Sbjct: 183 IDSLIAGDYGAFVDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKGCS 242 Query: 243 KMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 R I+ H L+NAL+P+ T+ GL GLLGG+ ITETVF PG+G + V A+ DFP++ Sbjct: 243 SFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFPII 302 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 +++ I A++Y+ NL+VD+LYA IDPR+R Sbjct: 303 QSMSLIIAMMYIGANLLVDVLYAFIDPRIR 332 >pir||C64557 dipeptide ABC transporter, permease protein - Helicobacter pylori (strain 26695) >gi|2313397|gb|AAD07368.1| (AE000548) dipeptide ABC transporter, permease protein (dppB) [Helicobacter pylori 26695] Length = 334 Score = 252 bits (638), Expect = 3e-66 Identities = 133/330 (40%), Positives = 200/330 (60%), Gaps = 6/330 (1%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F+I+RIL IPT+ GV++IVF++ + +P DPA G EKA + AI+ +++ + L++P Sbjct: 4 FIIKRILWAIPTLFGVSIIVFMMVHLVPGDPALVILG-EKANQAAIDALREQFGLNKPLI 62 Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 +QY F I ++ T PVM + +RFP T +LA+IA F L++GI +G+++A+ Sbjct: 63 EQYFFFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLAAI 122 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPP---FPEPITHIPM 182 KR S D FAL G+S P FWLG +++YIF V+ + G + + T + + Sbjct: 123 KRYSVFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGLYL 182 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 ID+L+ ++ F + LP L + V AR R S E DYV+ KAKG Sbjct: 183 IDSLIARDYGAFMDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKGCS 242 Query: 243 KMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 R I+ H L+NAL+P+ T+ GL GLLGG+ ITETVF PG+G + V A+ DFP++ Sbjct: 243 SFRVIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFPII 302 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 +++ I A++Y+ NL+VDILYA IDPR+R Sbjct: 303 QSMSLIIAMMYIGANLLVDILYAFIDPRIR 332 >sp|P77308|YDDR_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDR >gi|7449121|pir||A64902 peptide transport system permease protein b1486 - Escherichia coli >gi|1742426|dbj|BAA15141.1| (D90789) Dipeptide transport system permease protein DppB. [Escherichia coli] >gi|1742437|dbj|BAA15151.1| (D90790) Dipeptide transport system permease protein DppB. [Escherichia coli] >gi|1787761|gb|AAC74559.1| (AE000245) putative transport system permease protein [Escherichia coli K12] Length = 340 Score = 250 bits (633), Expect = 1e-65 Identities = 137/329 (41%), Positives = 203/329 (61%), Gaps = 7/329 (2%) Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67 L +R + + GV +I F+I++ IP DPA+ AG ++A+ +E I++ LD+P Y Sbjct: 7 LRQRCWGLVLVVAGVCVITFIISHLIPGDPARLLAG-DRASDAIVENIRQQLGLDQPLYV 65 Query: 68 QYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126 Q+ + L + RT PV+ ++ FP T +LA A L+IGIPLGI+SA+ Sbjct: 66 QFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLELAFGALLLALLIGIPLGILSAVW 125 Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG-VPPFPEPITHIP---M 182 RN W+D +VRI A+ G+STPAFWLG ++ +F+ ++ G + + +P TH+ + Sbjct: 126 RNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGFYL 185 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 +DALL GN E+F L LP TL F+ +G+ AR +R++ LE LS DY++ +A G+P Sbjct: 186 LDALLEGNGEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLP 245 Query: 243 KMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 I +AL NAL+P +TVLGL G LL G +TETVF PGMG++ V +IQ LDFP V Sbjct: 246 GWYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAV 305 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRV 330 + + + YV +NL+VD+LY IDPR+ Sbjct: 306 MGFAVVVSFAYVLVNLVVDLLYLWIDPRI 334 >sp|P94311|DPPB_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB >gi|11279742|pir||T44636 dipeptide transport protein dppB [imported] - Bacillus firmus >gi|1813496|gb|AAB41689.1| (U64514) dipeptide transporter protein dppB [Bacillus firmus] Length = 333 Score = 249 bits (628), Expect = 5e-65 Identities = 134/331 (40%), Positives = 202/331 (60%), Gaps = 6/331 (1%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 + +RR+L IP +IG+T++ F I + IP +PA+ G E+A+ +AI +++ L+EP++ Sbjct: 4 YAMRRLLLLIPVLIGMTIVTFSIIHLIPGNPAQTILG-EQASPQAIADLEERLGLNEPYW 62 Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 QY +K L T + RT+ P+M +I T +L I A F +IIG+ GI+SA Sbjct: 63 VQYGLYMKDLATGDLGTSLRTNKPIMEEIWPYLAATIELTIFAMIFAIIIGVNAGIVSAW 122 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI---THIPM 182 K+NSW D + AL+GVS P FWL + +IF + G +PI T + + Sbjct: 123 KQNSWFDYLSMFIALVGVSMPIFWLALMEQWIFAQELGWLPAFGRDNPRDPIISTTGLYV 182 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 D ++ G F+ + + LPG LG + M + AR R+S LE L SDY++ + AKG Sbjct: 183 FDTIISGQFDKTWESIKHLILPGIALGTIPMAIIARMTRSSMLEVLRSDYIRTVNAKGSG 242 Query: 243 K-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + + IY+HALKNAL+P++TV+GLQ G LLGG +TET+F PG+G Y +AI D+PV+ Sbjct: 243 QGVVIYKHALKNALIPVLTVVGLQTGNLLGGAILTETIFSWPGIGRYIFEAINYRDYPVI 302 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + + A I+V INL VD+LY+ IDPR++Y Sbjct: 303 QSGILVVATIFVLINLFVDLLYSYIDPRIKY 333 >pir||A72289 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4981697|gb|AAD36225.1|AE001772_4 (AE001772) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 335 Score = 233 bits (589), Expect = 2e-60 Identities = 138/338 (40%), Positives = 200/338 (58%), Gaps = 12/338 (3%) Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLD 62 +LK ++I RIL P I + ++FL+ IP DP A GG KA KE IE + LD Sbjct: 2 SLKNYVITRILLAAPMIFILLALIFLVLRIIPGDPVLAILGG-KAPKEVIEQKRHELGLD 60 Query: 63 EP----WYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIP 118 +P ++D L+KG + + + T PV +I +RFP T +L + AF ++IGI Sbjct: 61 KPIIVQFFDYIGDLLKGDLGKSTL---TGRPVWEEIKERFPATLELTLFAFIVAVLIGIF 117 Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG-VPPFP--E 175 G +A KR+S +D R+F+++ + P FW G +M YIF V R + G + P + Sbjct: 118 WGSFAAYKRDSGVDIGARMFSMVMYAVPVFWFGLMMQYIFGVILRWLPVGGRLSPTMNLK 177 Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235 IT I IDAL GN+E K LPG TLG + V R VRN+ + L+ D+V+ Sbjct: 178 VITGIYSIDALFTGNWEALKDVFEHLLLPGLTLGLVISSVFVRMVRNNTVLTLAQDFVKA 237 Query: 236 LKAKGVP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294 +A+G+ ++ ++R+ALKNALVPI T++GLQF LLGG +TET F PG+GSY V I+ Sbjct: 238 ARARGLKERVVLFRYALKNALVPIFTMMGLQFALLLGGAVLTETTFSWPGLGSYLVMKIR 297 Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 DFP + +A+I V I+++VD++ A+IDPRVRY Sbjct: 298 YRDFPAIQGTVVFFALIVVVISILVDVINALIDPRVRY 335 >dbj|BAB07362.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus halodurans] Length = 333 Score = 233 bits (587), Expect = 3e-60 Identities = 127/331 (38%), Positives = 199/331 (59%), Gaps = 6/331 (1%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 +++ R++ IP +IG+T+I F I + IP +PA+ G E+A+ +A+ +++ L+EP+ Sbjct: 4 YVLHRVMLLIPVLIGMTIITFSIVHLIPGNPAQTILG-EQASPQAVAELEERLGLNEPYL 62 Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 QY + ++ L+T RT P+ +I T +L A F +++G+ GIISA Sbjct: 63 VQYGYYVRDLLTGDFGTSLRTRAPISEEIVPYLGATLELTFFAMLFAVVVGVNAGIISAW 122 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI---THIPM 182 K++S+ D + ALLGVS P FWL + +IF + G +PI T + + Sbjct: 123 KQHSFFDYACMLVALLGVSMPIFWLALMQQWIFAQELGWFPAFGRDNPRDPIQSITGLYV 182 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 +DA+L ++ L LP LG + M + AR R+S LE L SDY++ + AKG Sbjct: 183 LDAILHWRWDHVHVALKHLVLPAIALGTIPMAIIARMTRSSMLEVLRSDYIRTVHAKGSS 242 Query: 243 K-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + + IY+HALKNA++P++TV GLQ G LLGG +TET+F PG+G Y +AI D+PV+ Sbjct: 243 QFVVIYKHALKNAMIPVLTVAGLQTGVLLGGAILTETIFSWPGIGRYIYEAITYRDYPVI 302 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + + AI++V INLIVD+LY+ IDPR++Y Sbjct: 303 QSGILVVAIMFVVINLIVDLLYSYIDPRIKY 333 >gi|11499357 dipeptide ABC transporter, permease protein (dppB) [Archaeoglobus fulgidus] >gi|7449122|pir||G69470 dipeptide ABC transporter, permease protein (dppB) homolog - Archaeoglobus fulgidus >gi|2648780|gb|AAB89482.1| (AE000980) dipeptide ABC transporter, permease protein (dppB) [Archaeoglobus fulgidus] Length = 354 Score = 230 bits (581), Expect = 2e-59 Identities = 120/337 (35%), Positives = 199/337 (58%), Gaps = 6/337 (1%) Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60 M++L ++I R L IPT++ + IVFLI IP DP A G +K +E +E ++ Sbjct: 19 MSSLPAYIITRFLMVIPTVLILLTIVFLILRIIPGDPITAMVG-QKVPEEVLEKLRHEAG 77 Query: 61 LDEPWYDQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIP 118 LD+P+++QY+ +KG+ T + PV+ +I FP T +L I F ++IG+ Sbjct: 78 LDKPYHEQYIEYLKGVFTGDLGKSMIWGKRPVIAEIMDHFPATLELTIFGFILSVLIGVA 137 Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG-VPP--FPE 175 G I+A +R S +D+ +RI++++ + W G L+ +F V ++ I G + P PE Sbjct: 138 TGSIAAFRRGSKVDSGMRIYSIVAYTLFIPWFGMLLQMLFGVYLKVLPIGGRITPGNTPE 197 Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235 IT + ++D++L NF LA LP TLG + G R +RN+ ++ LS D+++ Sbjct: 198 TITGLYVLDSILTLNFNSLIDALAHLALPAITLGIVLSGAYTRLLRNNLIDVLSQDFIKA 257 Query: 236 LKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQN 295 +A+GV ++ HA+KNA +P+VT++GLQF LL G +TE+ F PGMG++ ++ I+ Sbjct: 258 YRARGVRNRKVVFHAMKNAFIPVVTLMGLQFAILLAGAVLTESTFSWPGMGTFLIERIEY 317 Query: 296 LDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 D+ V YA+ I+L+VD++YA++DPR+RY Sbjct: 318 RDYTSVQGAIVFYAVFVALISLVVDVIYALLDPRIRY 354 >sp|P37316|DPPB_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB >gi|1073367|pir||S47765 dipeptide transport system permease protein dppb - Escherichia coli >gi|349226|gb|AAA23703.1| (L08399) transmembrane protein [Escherichia coli] >gi|466682|gb|AAB18521.1| (U00039) dppB [Escherichia coli] >gi|1789965|gb|AAC76568.1| (AE000431) dipeptide transport system permease protein 1 [Escherichia coli K12] Length = 339 Score = 227 bits (572), Expect = 2e-58 Identities = 121/335 (36%), Positives = 188/335 (56%), Gaps = 8/335 (2%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 +F++RR+ IPT IG+TL+ F + IP DP AG + E + LD+P Sbjct: 3 QFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPM 62 Query: 66 YDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124 + QY+ I G++ + I ++ PV + RF T +L + A F +GIP+G+++A Sbjct: 63 WQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAA 122 Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG------VPPFPEPIT 178 +KR S D AL G S P FW G +++ + V + LT ++G P+T Sbjct: 123 VKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPLT 182 Query: 179 HIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKA 238 +ID + G F +A LP LG + + V R R+S LE L DY++ +A Sbjct: 183 GFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARA 242 Query: 239 KGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297 KG+ +MR I HAL+NA++P+VTV+GLQ G LL G +TET+F PG+G + + A+Q D Sbjct: 243 KGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRD 302 Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 +PVV + A + + +NL+VD+LY V++PR+R+ Sbjct: 303 YPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRH 337 >pir||F75454 peptide ABC transporter, permease protein - Deinococcus radiodurans (strain R1) >gi|6458683|gb|AAF10534.1|AE001948_3 (AE001948) peptide ABC transporter, permease protein [Deinococcus radiodurans] Length = 345 Score = 224 bits (566), Expect = 9e-58 Identities = 134/350 (38%), Positives = 192/350 (54%), Gaps = 33/350 (9%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW- 65 +LIRR+L + ++G++L+VF IP P A G E+ T E+I D PW Sbjct: 4 YLIRRLLRTLLVMLGISLLVFTFVRLIPGGPCTAILG-ERGTPESIAACNHDRGFDRPWF 62 Query: 66 -------------YDQYVF-LIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFF 111 Y +Y+ L++G + +II T PV D+ RFP T +LA A F Sbjct: 63 FNAGGEGGALNAQYPEYMAGLLRGDLDKSII---TQIPVKEDLKTRFPATVELAFAALIF 119 Query: 112 ILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVP 171 L++G+P GII+AL+RNS D + +L+GVS P FWLG L+ Y F VK + +P Sbjct: 120 ALLVGLPAGIIAALRRNSLWDNLATTISLIGVSMPVFWLGLLLSYFFGVK-----LGWLP 174 Query: 172 PFP--------EPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNS 223 P + IT + ++D LLRG LP LG + + + AR R+S Sbjct: 175 PSARLGTEFDLQSITGMNVLDGLLRGQPAAAWDAAKHLVLPAIALGTIPLAIIARITRSS 234 Query: 224 FLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGL 282 L+ L DYV+ +AKG+ I +HAL+NAL+PIVTV+GLQ GGLLGG +TET+F Sbjct: 235 LLDVLGQDYVRTARAKGLSARNITLKHALRNALLPIVTVIGLQIGGLLGGAVLTETIFSW 294 Query: 283 PGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 G+GS+ AI DF V+ A++ +NL+VD+ YA +DPR++Y Sbjct: 295 NGVGSWLYDAISARDFFVIQGGVIFIALVISLVNLLVDLSYAALDPRIQY 344 >dbj|BAB03748.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus halodurans] Length = 314 Score = 223 bits (562), Expect = 3e-57 Identities = 127/327 (38%), Positives = 194/327 (58%), Gaps = 22/327 (6%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F+IRR+L IP +IGV++IVF + + +P DPA AG E A ++ +E I++ L++P Sbjct: 4 FIIRRLLQTIPVLIGVSIIVFSLLHLVPGDPAIMIAG-ESAPQQTVENIRERLGLNDPVP 62 Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 QY + G+I + R+ PV DI +RF VT +L+I + + +G+ GI+SA Sbjct: 63 VQYFNYVSGVIQGDLGTSFRSGRPVADDIAQRFWVTLELSIYSIILSVFLGLIAGIVSAT 122 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185 KR S+ DT + I AL G+S P FWLG +++ F + Y +P A Sbjct: 123 KRYSFADTSLMIIALFGLSMPNFWLGLMLIQWFAIGYT--------------PWLPFDTA 168 Query: 186 LLR-GNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP-K 243 + F+Q + LP TLG G + AR R+S LE L DY++ +AKGV + Sbjct: 169 WFAPSGWGSFRQIV----LPVITLGTAGAAIVARMTRSSMLEVLHQDYIRTARAKGVKER 224 Query: 244 MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVA 303 + +YRHALKNAL+P+VTV+G+QFG LLGG+ +TE VF + G+G ++AI+ DFPVV Sbjct: 225 VVVYRHALKNALIPVVTVVGIQFGFLLGGSVLTEQVFAINGLGRLIIEAIRQRDFPVVQG 284 Query: 304 VTFIYAIIYVTINLIVDILYAVIDPRV 330 + ++++V +NL+VDI Y ++ R+ Sbjct: 285 AVLVISVLFVFVNLLVDITYRFLNKRI 311 >sp|P45096|DPPB_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB >gi|1074012|pir||G64188 transmembrane protein dppB - Haemophilus influenzae (strain Rd KW20) >gi|972895|gb|AAA95972.1| (U17295) DppB [Haemophilus influenzae] >gi|1574114|gb|AAC22840.1| (U32798) dipeptide ABC transporter, permease protein (dppB) [Haemophilus influenzae Rd] Length = 333 Score = 217 bits (548), Expect = 1e-55 Identities = 128/337 (37%), Positives = 184/337 (53%), Gaps = 16/337 (4%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 KF+ +RIL IPT I +TLI F + + IP DP + G T E + + LD P Sbjct: 3 KFVFKRILMVIPTFIAITLITFALVHFIPGDPVEIMMGERGLTAEVHQQMMHQLGLDLPL 62 Query: 66 YDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124 Y QY I +I RT PV+T+ FP T +LA A F+ L+ GI LG I+A Sbjct: 63 YQQYFHYIGNVIQGDFGASFRTQQPVLTEFFTLFPATAELAFFALFWSLLGGIILGTIAA 122 Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPP--------FPEP 176 +K++SWI V +L G S P FW G ++ I +V +L G+P + + Sbjct: 123 VKKDSWISHTVTAASLTGYSMPIFWWGLIL--ILYVSPQL----GLPQGGRLDNEFWIDT 176 Query: 177 ITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFL 236 T +ID+ L G F+ + LP LG + + + R R++ LE L DY++ Sbjct: 177 PTGFMLIDSWLSGVSGAFENAVKSLILPAIVLGTVPLAIITRMTRSAMLEVLGEDYIRTA 236 Query: 237 KAKGVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQN 295 KAKG+ RI HAL+NAL+P+VTV+GL LL G +TET+F PG+G + + AIQ Sbjct: 237 KAKGLSYTRIVIVHALRNALIPVVTVVGLIVAQLLSGAVLTETIFSWPGIGKWIIDAIQA 296 Query: 296 LDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 D+PV+ I A I + +NL VD+LY V++PR+R+ Sbjct: 297 RDYPVLQGSVLIIATIIIVVNLTVDLLYGVVNPRIRH 333 >sp|P75798|YLIC_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLIC >gi|7442416|pir||G64820 probable oligopeptide transport protein b0831 - Escherichia coli >gi|1787053|gb|AAC73918.1| (AE000185) putative transport system permease protein [Escherichia coli K12] >gi|4062408|dbj|BAA35526.1| (D90721) Hypothetical protein o314 [Escherichia coli] >gi|4062416|dbj|BAA35534.1| (D90722) Hypothetical protein o314 [Escherichia coli] Length = 306 Score = 211 bits (531), Expect = 1e-53 Identities = 118/328 (35%), Positives = 186/328 (55%), Gaps = 28/328 (8%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 ++I+R+L IPT+ V+++VFL + +P DPA+ AG E A + IEL+++ LD+P Y Sbjct: 4 YVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPE-ADAQVIELVRQQLGLDQPLY 62 Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 Q+ I + + + PV +I RF T L I + + +I G+ GII+A+ Sbjct: 63 HQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAV 122 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185 RN W D + A+ G+S PAF LG L++ +F V+ G + Sbjct: 123 WRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSW------------ 170 Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMR 245 QH + LP TLG V ARF R SF++ LS DY++ +AKGV + Sbjct: 171 ----------QH---YILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETW 217 Query: 246 IY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304 + +H L+NA++P+VT++GLQFG LLGG+ + E VF PG+G V +++ D+PV+ A Sbjct: 218 VVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAE 277 Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVRY 332 ++++ ++ INL+VD+LYA I+P +RY Sbjct: 278 ILLFSLEFILINLVVDVLYAAINPAIRY 305 >pir||C83082 probable permease of ABC transporter PA4503 [imported] - Pseudomonas aeruginosa (strain PAO1) >gi|9950743|gb|AAG07891.1|AE004864_3 (AE004864) probable permease of ABC transporter [Pseudomonas aeruginosa] Length = 336 Score = 209 bits (526), Expect = 4e-53 Identities = 120/331 (36%), Positives = 175/331 (52%), Gaps = 5/331 (1%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F+ RR+ IPT GVTL+ F + IP DP + G + + LD+P Y Sbjct: 4 FIARRLGLLIPTFFGVTLLTFALIRLIPGDPVEVMMGERRVDPQMHAEALHRLGLDKPLY 63 Query: 67 DQYVFLIKGLITNTIIDP-RTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 QY+ + L + RT PV + F T +L+ A F +G+ G+++AL Sbjct: 64 QQYLDYVGNLAQGNLGKSIRTHEPVWNEFLTLFSATLELSFAAMLFAGTLGLLAGVVAAL 123 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIA---GVPPFPEPITHIPM 182 KR S D V +L G S P FW G L++ +F V T ++ GV EP T + Sbjct: 124 KRGSIFDHGVMTISLAGYSMPIFWWGLLLIMLFSVSLGWTPVSDRIGVLYEVEPKTGFML 183 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 ID LL F + LP LG + + V AR R++ LE L DYV+ +AKG+ Sbjct: 184 IDTLLSDEEGAFLDAVRHLILPAIVLGTIPLAVIARMTRSAMLEVLREDYVRTARAKGLS 243 Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 R+ + HAL+NAL+P++TVLGLQ G LL G +TET+F PG+G + + AI D+PVV Sbjct: 244 PARVVFVHALRNALIPVLTVLGLQVGTLLAGAVLTETIFSWPGIGKWLIDAISARDYPVV 303 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + A + + +N +VDILY + +PR+R+ Sbjct: 304 QNGILLVATLVILVNFVVDILYGLANPRIRH 334 >pir||F72720 probable oligopeptide transport system permease protein oppB APE0303 - Aeropyrum pernix (strain K1) >gi|5103942|dbj|BAA79258.1| (AP000059) 342aa long hypothetical oligopeptide transport system permease protein oppB [Aeropyrum pernix] Length = 342 Score = 206 bits (518), Expect = 4e-52 Identities = 116/345 (33%), Positives = 196/345 (56%), Gaps = 21/345 (6%) Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDE 63 L K++I R L+ IPT+ G++++VF++ ++ DPA + + T E ++ ++++YH D+ Sbjct: 2 LIKYIIYRFLSAIPTLFGLSILVFILT-RLVGDPAAIYIHPDM-TPEDVQRVRELYHFDD 59 Query: 64 PWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRF-PVTFQLAIIAFFFILIIGIPLGII 122 P Y QY++ +KG++ + T+N +T+ K F P T +LA+ AF +I+G+ LG Sbjct: 60 PLYVQYIYWLKGVLQGDLGYSVTANMPVTEAIKSFLPATLELALYAFTLSIIVGVYLGTK 119 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG------------V 170 +A ++ ID + R+ AL G S P FWL ++LY+F Y + G + Sbjct: 120 AAANKDKLIDHLTRLLALSGYSMPVFWLALMLLYLF---YNVLDFVGPGRLSLEVRFKYM 176 Query: 171 PPFPEP--ITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEAL 228 PP+ + T + IDALL N E+F + P T ++ + + R +R+S +E + Sbjct: 177 PPYGDFKFYTGLLTIDALLNRNIEVFIDAVKHLIPPVLTQTYIHIAIFIRVLRSSMIEEM 236 Query: 229 SSDYVQFLKAKGVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGS 287 + +YV F +KG+ + + + + +N+ + +V V GLQF GL+ G +TETVF PG+G Sbjct: 237 NKEYVDFALSKGLRREVVLKDYVRRNSYISLVNVAGLQFVGLMSGVVLTETVFNWPGLGR 296 Query: 288 YAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 +A A LD VV T +++ +NL VDIL A +DPR+RY Sbjct: 297 FAANAAIQLDPAAVVGFTLFVGTLFIVVNLAVDILLAYLDPRIRY 341 >gb|AAG20589.1| (AE005129) dipeptide ABC transporter permease; DppB2 [Halobacterium sp. NRC-1] Length = 347 Score = 205 bits (515), Expect = 9e-52 Identities = 116/350 (33%), Positives = 193/350 (55%), Gaps = 30/350 (8%) Query: 5 KKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEP 64 K+F+++R+L +P + GV VF+I + DPA+ G ++ I+L +++ L++P Sbjct: 4 KRFILKRLLLLVPVLFGVATFVFVILHLASGDPARVILGQRAPQQQVIQLRQEL-GLNDP 62 Query: 65 WYDQYV-FLIKGLITN--TIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121 Y QY FL+ + V + + + PVT +LA+ +++GIPLG+ Sbjct: 63 VYVQYARFLVDAAQFDFGQSYSVAQGTAVRSVLADKIPVTLELALYGQAIGILLGIPLGV 122 Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE------ 175 ISA+++++ D RI AL G+S P +W G L++ F +T GV P Sbjct: 123 ISAVEQDTLTDHFGRIGALSGISVPIYWSGPLLILAF------STFLGVFPASGRIESTI 176 Query: 176 -------------PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRN 222 P+T + +D LL GN + + LP T+G M + +R +R+ Sbjct: 177 FLADSWSLFGVTLPLTGMLTVDTLLLGNVSAWVSAVMHLILPAATIGIYSMALISRMMRS 236 Query: 223 SFLEALSSDYVQFLKAKGV-PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFG 281 S LE + DY++ +AKG K+ I +H +NALVP++TV+G+QFG LLGG +TETVFG Sbjct: 237 SMLEVVRQDYMRTARAKGQGSKITIMKHGFRNALVPVITVIGIQFGSLLGGAVLTETVFG 296 Query: 282 LPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 + G+G+ V AI D+P+V +A+++ +NL+VD+ Y+ +DPR++ Sbjct: 297 IEGIGTILVSAINANDYPLVQGTVLTFALLFTLVNLLVDVTYSYLDPRIQ 346 >pir||F72451 probable peptide transport system permease protein APE2258 - Aeropyrum pernix (strain K1) >gi|5105959|dbj|BAA81270.1| (AP000064) 339aa long hypothetical peptide transport system permease protein [Aeropyrum pernix] Length = 339 Score = 196 bits (492), Expect = 4e-49 Identities = 107/335 (31%), Positives = 184/335 (53%), Gaps = 6/335 (1%) Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLD 62 +L ++ + R L +PT++ + +VF++ IP DP A G E +E I++ LD Sbjct: 6 SLLRYAVTRALAIVPTVLILYTVVFIVLRVIPGDPVTAALGTRSIPPEELEAIRERLGLD 65 Query: 63 EPWYDQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 +P + QY+ + G++ + T PV DI +RFP T +L I F +++G+ G Sbjct: 66 QPLWRQYIDYLLGVMRGDFGESMTLYGRPVARDIMERFPATLELTIFGFIVSVVLGVGSG 125 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG-VPPFP--EPI 177 +++A R +D ++R +++ + WLG ++ Y+F +K + G + P + + Sbjct: 126 VVAAF-RGGLVDRLLRTSSIVAYTLFIPWLGLMLKYVFSIKLGILPTGGRIDPRVNLDVV 184 Query: 178 THIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237 T + ++D+++ N + LP TLG + GV R VR EAL S+ + Sbjct: 185 TGLYVLDSIITANPAALVSAVEHLILPSLTLGIVLSGVYTRLVRIHVAEALRSEVAVAYR 244 Query: 238 AKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297 A+G+ + RI H L+ +L+P +T++GLQF LLGG +TE F PG+GS V+ I D Sbjct: 245 ARGLRESRIAVHMLRISLIPTITMMGLQFAILLGGAVLTEATFSWPGLGSLLVERISYRD 304 Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + + VT +A + ++LIVDI+YA+++PRVRY Sbjct: 305 YSTIQGVTVFFAFMVGLVSLIVDIIYAIVNPRVRY 339 >pir||D75202 dipeptide abc transporter, dipeptide-binding protein PAB0092 - Pyrococcus abyssi (strain Orsay) >gi|5457576|emb|CAB49067.1| (AJ248283) dipeptide ABC transporter, dipeptide-binding protein [Pyrococcus abyssi] Length = 310 Score = 192 bits (482), Expect = 6e-48 Identities = 116/332 (34%), Positives = 180/332 (53%), Gaps = 34/332 (10%) Query: 5 KKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEP 64 K+++I++IL+ + I V++ F I + IP DPA+ + GE AT+E + + LD P Sbjct: 3 KEWIIKKILSLLIPIFIVSVFSFSILHLIPGDPAR-YLLGEFATEEQLAKFRHQLGLDRP 61 Query: 65 WYDQYVF----LIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 Y QY+ +++G +++ PV I R T +L + A+ + G+ G Sbjct: 62 LYIQYIDWMSKVLRGDFGTSLVQ---GVPVSELIAGRLSYTLKLTVTAWIIAWVFGLVFG 118 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 +++A+ +++ D +V A+ +S P FWLG L++ IF VK + I+G + Sbjct: 119 MLAAVYKHTLFDYIVMTLAVFFMSMPYFWLGILLILIFGVKLGILPISGPGDW------- 171 Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 +HL LP TLG + V AR R + L+ L DY+ +AKG Sbjct: 172 ---------------RHLI---LPSLTLGLPQVAVIARLTRANMLDVLEKDYIMTARAKG 213 Query: 241 VP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299 +P +M +Y+HAL+NAL+P+VT + LQ L GG +TETVFG PGMG+ V AI D+P Sbjct: 214 LPERMVVYKHALRNALIPLVTYMFLQIPWLFGGAVVTETVFGWPGMGNLLVMAIFQRDYP 273 Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 VV A+ I ++ V N + DI Y +IDPRVR Sbjct: 274 VVQAIVLIIGVLTVIANFLADITYTIIDPRVR 305 >pir||B70789 probable peptidetransport system permease - Mycobacterium tuberculosis (strain H37RV) >gi|2960089|emb|CAA17987.1| (AL022121) dppB [Mycobacterium tuberculosis] Length = 308 Score = 191 bits (480), Expect = 1e-47 Identities = 100/327 (30%), Positives = 171/327 (51%), Gaps = 24/327 (7%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 ++ RR+ +P +G TL+++ + + +P DP A AG T ++ YHLD+P+ Sbjct: 4 YVARRVAVMVPVFLGATLLIYGMVFLLPGDPVAALAGDRPLTPAVAAQLRSHYHLDDPFL 63 Query: 67 DQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126 QY+ + G++ + + PV + FPVT +LA+IA ++GI G+I+ L+ Sbjct: 64 VQYLRYLGGILHGDLGRAYSGLPVSAVLAHAFPVTIRLALIALAVEAVLGIGFGVIAGLR 123 Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDAL 186 + D+ V + L+ ++ P F LG+L ++F V+ + P+T Sbjct: 124 QGGIFDSAVLVTGLVIIAIPIFVLGFLAQFLFGVQLEIA----------PVTVGE----- 168 Query: 187 LRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI 246 + + R LPG LG + R R++ +DYV+ AKG+ + R+ Sbjct: 169 --------RASVGRLLLPGIVLGAMSFAYVVRLTRSAVAANAHADYVRTATAKGLSRPRV 220 Query: 247 YR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVT 305 H L+N+L+P+VT LG G L+GG +TE +F + G+G QA+ + P VV++ Sbjct: 221 VTVHILRNSLIPVVTFLGADLGALMGGAIVTEGIFNIHGVGGVLYQAVTRQETPTVVSIV 280 Query: 306 FIYAIIYVTINLIVDILYAVIDPRVRY 332 + +IY+ NL+VD+LYA +DPR+RY Sbjct: 281 TVLVLIYLITNLLVDLLYAALDPRIRY 307 >emb|CAC16444.1| (AL450165) putative oligopeptide ABC transporter integral membrane protein [Streptomyces coelicolor] Length = 330 Score = 189 bits (474), Expect = 6e-47 Identities = 111/326 (34%), Positives = 170/326 (52%), Gaps = 29/326 (8%) Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67 +++R+LT + + + F + ++ DP K + AT E +++ LD+ + Sbjct: 29 VLKRLLTALFVLFCTATVAFFLV-RLSGDPVKILLPPD-ATAEQERVLRHSLGLDQSLFA 86 Query: 68 QYVFLIKGLITNTIIDPRT-SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126 QY+ ++GL+ D PV + R P T +LA A L++ IP GI++A++ Sbjct: 87 QYLDYLRGLLHLDFGDSLVYGQPVSEILADRLPATIELAAAALAVTLVVAIPAGIVAAMR 146 Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDAL 186 R D V LLG STP FW+G L++ +F V R +G Sbjct: 147 RGRGTDKTVMTGVLLGQSTPPFWVGILLILVFAVWLRALPASGYGT-------------- 192 Query: 187 LRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV-PKMR 245 LA LP TL + V AR +R+S ++ LSSD+++ +AKG P Sbjct: 193 -----------LANLVLPAVTLAVYSVAVVARLLRSSLIDVLSSDHIRSARAKGFGPLQV 241 Query: 246 IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVT 305 + RH L+NA +P+VTV+GL+ G LLGG +TE VF PG+G V+AI N DFP+V A Sbjct: 242 VLRHGLRNASLPVVTVVGLEVGNLLGGAILTERVFSWPGVGQLTVEAISNRDFPLVQATV 301 Query: 306 FIYAIIYVTINLIVDILYAVIDPRVR 331 +A +V +NL+VD+ Y+ +DPRVR Sbjct: 302 LFFAATFVVVNLLVDLSYSFLDPRVR 327 >sp|P26903|DPPB_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB >gi|98272|pir||S16648 dipeptide transport system permease protein dppB - Bacillus subtilis >gi|580850|emb|CAA40003.1| (X56678) dciAB [Bacillus subtilis] >gi|2632014|emb|CAA05573.1| (AJ002571) DppB [Bacillus subtilis] >gi|2633647|emb|CAB13150.1| (Z99110) dipeptide ABC transporter (permease) [Bacillus subtilis] Length = 308 Score = 188 bits (472), Expect = 1e-46 Identities = 111/334 (33%), Positives = 182/334 (54%), Gaps = 37/334 (11%) Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIEL-IKKMYHLD 62 + +++I+R TI+ +T + F++ IP P E+ T EA++ ++ YHLD Sbjct: 1 MARYMIKRFWAMAATILVITTLTFVLMKVIPGSPFNE----ERGTNEAVQKNLEAYYHLD 56 Query: 63 EPWYDQYVFLIKGLIT----NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIP 118 +P QY+F +K +IT +I P S M + G FPV+F+L + A +I G+ Sbjct: 57 DPLIFQYIFYLKSIITFDFGPSIKKPSDSVNDMLERG--FPVSFELGMTAIVIAVISGLV 114 Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPIT 178 LG+I+AL+RN ++D A+LG+S P F L L++ F V +L FP Sbjct: 115 LGVIAALRRNGFLDYAAMSLAVLGISIPNFILATLLIQQFAVNLKL--------FPAATW 166 Query: 179 HIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKA 238 P+ H+ LP L M + AR R+S +E L+ DY++ KA Sbjct: 167 TSPI--------------HMV---LPTAALAVGPMAIIARLTRSSMVEVLTQDYIRTAKA 209 Query: 239 KGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297 KG+ +I +HAL+NAL+P++TVLG +L G+ + E +F +PGMG Y V++I D Sbjct: 210 KGLSPFKIIVKHALRNALMPVITVLGTLVASILTGSFVIEKIFAIPGMGKYFVESINQRD 269 Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 +PV++ T Y++I + + +VD+ Y ++DPR++ Sbjct: 270 YPVIMGTTVFYSVILIIMLFLVDLAYGLLDPRIK 303 >pir||B72367 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4981045|gb|AAD35617.1|AE001728_18 (AE001728) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 321 Score = 187 bits (470), Expect = 2e-46 Identities = 114/329 (34%), Positives = 178/329 (53%), Gaps = 13/329 (3%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 K++ RR++ IP +I ++ IVF+I P D + +++ +E ++K LD+PW Sbjct: 3 KYIARRLIIMIPELIIISFIVFIIMEAAPGDFLDMYRLDPSVSQQFLEKMEKELGLDKPW 62 Query: 66 YDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124 QY +K ++ PV T I +R T L++ + F ++GI +G+ SA Sbjct: 63 IVQYGIWLKNVLKGDFGYSFYYRRPVSTLIWERVFATVILSVSSLAFEWLLGIIVGVFSA 122 Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMID 184 LK+ S D ++ + A G++ P F+L L+LY+ K IAG+ + H M Sbjct: 123 LKKYSIWDKILTVVAFSGIALPGFFLAILLLYMA-AKTGWFPIAGMVS----VNHNQMT- 176 Query: 185 ALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP-K 243 +E FK + LP LGF G R++R S L+ L+ DYV+F +AKG+P + Sbjct: 177 -----TWEKFKDIASHLVLPTIALGFGGFASLMRYMRGSLLDVLNEDYVEFARAKGMPER 231 Query: 244 MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVA 303 + IY+HAL+NA+ P++T LG +LGG I E +F PGMG QA+ D +V+A Sbjct: 232 VVIYKHALRNAINPMITFLGFSISNVLGGAVIIENIFAWPGMGRLIYQALLQQDIYIVMA 291 Query: 304 VTFIYAIIYVTINLIVDILYAVIDPRVRY 332 I AI+ V NL+ D+L A +DPRVR+ Sbjct: 292 SAVISAIMLVIGNLVADVLLAAVDPRVRF 320 >gi|10954943 Probable accD [Agrobacterium tumefaciens] >gi|6498296|dbj|BAA87748.1| (AB016260) Probable accD [Agrobacterium tumefaciens] Length = 308 Score = 187 bits (469), Expect = 2e-46 Identities = 116/327 (35%), Positives = 174/327 (52%), Gaps = 29/327 (8%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F++ R++ I ++ VF+I ++ DPA+A G E AT EA+ + + LD Sbjct: 4 FILARLVRAIIVMMLTVTFVFIIL-RLGGDPARAMLG-ENATPEALAAFRTAWGLDRSIP 61 Query: 67 DQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 +Q+ ++L L + + V T I +R P T L I AF +++GIP GII+A+ Sbjct: 62 EQFLIYLASALRGDFGVSAADGREVFTVIAERIPKTLTLTISAFVLSILVGIPAGIIAAV 121 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185 +R+S D V A+LG S P F LG ++++F V +R+ +G + I Sbjct: 122 RRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTWQHAI-------- 173 Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMR 245 LP T G + ARF R++ +E L Y+ +A G+PK Sbjct: 174 -----------------LPVATFGLVNAAAIARFARSALIEVLEQPYIAAARADGIPKWE 216 Query: 246 IY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304 + RHAL NA +P+VT+LG GLLGG+ I ETVF PG+GS V+AI D VV A+ Sbjct: 217 VVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAM 276 Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVR 331 ++ VTINLIVD+LYAV++P++R Sbjct: 277 ILLFTAFMVTINLIVDVLYAVLNPKIR 303 >sp|Q53191|Y4TP_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TP >gi|2182646|gb|AAB91869.1| (AE000098) Y4tP [Rhizobium sp. NGR234] Length = 313 Score = 186 bits (468), Expect = 3e-46 Identities = 105/328 (32%), Positives = 176/328 (53%), Gaps = 20/328 (6%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 +++RR+++ I + V + +FL+ P DPA AG AT++ + I++ L+EP Sbjct: 4 YILRRLVSTIAVMAMVGIFIFLLLRLAPGDPAAVIAG-PTATEQMVANIREELGLNEPLP 62 Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 Q+V ++ T PV+ + +R T L+++ + +G+ G+++A Sbjct: 63 VQFVHWASDVLRGNFGASVFTGVPVLQLLSQRLEPTISLSVLTMILSVTVGVSFGVLAAW 122 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185 + ++D + F+ +G S P F +GY+++Y F ++ R + G + + P Sbjct: 123 RSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSINQGVA--PWFLH 180 Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV-PKM 244 L+ LP TL + AR R S LE LS DY++ AKG P Sbjct: 181 LI---------------LPTVTLSVPYIAFIARITRGSMLEVLSEDYMRTAAAKGASPFA 225 Query: 245 RIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304 ++ HALKNA VPI+TV+G+ F ++GG +TETVF +PG+G V AI+N D+P++ V Sbjct: 226 MLFHHALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAIKNRDYPIIQTV 285 Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVRY 332 + + +YV INL+VD+ Y +IDPR+RY Sbjct: 286 LVLISGLYVLINLLVDLAYTLIDPRIRY 313 >gb|AAK42738.1| Dipeptide ABC transporter permease protein (dppB-3) [Sulfolobus solfataricus] Length = 343 Score = 186 bits (467), Expect = 4e-46 Identities = 115/338 (34%), Positives = 184/338 (54%), Gaps = 10/338 (2%) Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADP---AKAWAGGEKATKEAIELIKKMY 59 N+ F+IRRI+ T+I + ++VF++ + I +P A+ + G AT +E + K Y Sbjct: 4 NIVFFIIRRIINAFITLILLIILVFIMIHIIAPNPLALARLYTGPH-ATYTELEQVAKQY 62 Query: 60 HLDEPWYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIP 118 LD+P Y Q + ++I L N IDP PV+T IGK P T +L I A ++IG+ Sbjct: 63 GLDQPLYIQIINYIINVLHGNFGIDPTYKVPVITLIGKYLPRTLELVIPATILSVVIGLF 122 Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLT----TIAGVPPFP 174 G I+A RN +D +VR L+ ++P F + ++ + RL T+ V P Sbjct: 123 TGAIAASNRNKPLDYLVRGVYLVTWASPPFLIAVILQLVIAYYLRLLPPTGTVNPVLTPP 182 Query: 175 EPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQ 234 + IT P+++A+L G++ F + LP + + G+ R R S L+ + SD+ + Sbjct: 183 KSITPFPLLNAMLAGDWPYFSSLVHHMVLPVIAIALVSFGIVTRIARASMLDYMESDFAK 242 Query: 235 FLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293 KG+ + R+ Y L+NA +P+VT++ L FG + G + E +F GMG + QAI Sbjct: 243 LSLMKGLSRRRVVYGVVLRNASIPLVTLIALLFGYSVAGAVVIEDIFQYHGMGYFITQAI 302 Query: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 ++LD+ ++ T I I + NLI DILY V+DPRVR Sbjct: 303 ESLDYTSILGTTIIVGIAIIIANLIADILYGVLDPRVR 340 >sp|P33591|NIKB_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKB >gi|628767|pir||S39595 NikB protein - Escherichia coli >gi|404846|emb|CAA51660.1| (X73143) NikB [Escherichia coli] Length = 314 Score = 184 bits (463), Expect = 1e-45 Identities = 112/330 (33%), Positives = 174/330 (51%), Gaps = 29/330 (8%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA--GGEKATKEAIELIKKMYHLDE 63 ++++RR L IP ++ ++I+FLI DPA + T E + + M LD+ Sbjct: 3 RYVLRRFLLLIPMVLAASVIIFLIVRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQ 62 Query: 64 PWYDQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 P Y QY +L K L + I + PV+ D+ P T +LA A IL+ +PLGI Sbjct: 63 PLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIW 122 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +A R+ D VR A LGVS P FWL +L++ F V ++ Sbjct: 123 AARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV------------------YLQW 164 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV- 241 + A+ G + QH+ LP ++ F+ + + AR +R S L+ +V + + +G+ Sbjct: 165 LPAMGYGGW----QHII---LPAVSIAFMSLAINARLLRPSMLDVAGQRHVTWARLRGLN 217 Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 K RH L+NA +P++T +G+ G L+GGT I E +F PG+G YAV AI N D+PV+ Sbjct: 218 DKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVI 277 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 T + +++V NLIVD+L A +DPR+R Sbjct: 278 QCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307 >dbj|BAB04287.1| (AP001509) nickel transport system (permease) [Bacillus halodurans] Length = 314 Score = 184 bits (463), Expect = 1e-45 Identities = 111/328 (33%), Positives = 170/328 (50%), Gaps = 29/328 (8%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAW--AGGEKATKEAIELIKKMYHLDEP 64 ++ +RI IP ++ I+F+ P DPA+A+ A T+E + + + LD+P Sbjct: 4 YIAKRIFAVIPIVLFAIFIMFVFIRLSPVDPAEAYLTAANIHPTEELLAEKRHEFGLDQP 63 Query: 65 WYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 QYV ++K + T+ PV ++ R P T QLA+ + F ++I IPLG +S Sbjct: 64 MAVQYVQTIVKVFQLDFGHSYVTNQPVWDEVTARMPATLQLAVSSIFLAVLISIPLGFLS 123 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183 A+ +NS ID R+ + LG S P FWLGYL+++ F VK L + G Sbjct: 124 AIYKNSLIDRFSRLLSYLGASIPQFWLGYLLIFFFSVKLNLFPVEG-------------- 169 Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV-P 242 RG++ A LP TL + + R +R S LE + YV + + +G+ Sbjct: 170 ----RGSW-------AHLVLPTVTLSLALIAIYTRLLRASVLEQMQESYVLYARTRGIKE 218 Query: 243 KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 K+ + +H LK A+ P++T LG+ G LL GT I E VF PG G Y V AI N D PV+ Sbjct: 219 KVIMVKHVLKLAISPVITGLGMNVGKLLTGTIIVEQVFSWPGFGRYFVDAIFNRDIPVIQ 278 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRV 330 + A +++ NLIVD++ +DPR+ Sbjct: 279 CYVLLAACLFIVCNLIVDLVQLAMDPRI 306 >pir||F72371 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4981014|gb|AAD35588.1|AE001726_22 (AE001726) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 345 Score = 183 bits (460), Expect = 2e-45 Identities = 118/340 (34%), Positives = 181/340 (52%), Gaps = 15/340 (4%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGG----EKATKEAIELIKKMYHLD 62 ++IRR+L ++GVT IVF + + D A +K T E ++ +K+ Y L+ Sbjct: 4 YIIRRLLLLPLILLGVTFIVFSMIQSLGPDKLLAAYVNPNMLDKLTPEQMDALKEKYGLN 63 Query: 63 EPWYDQYVFLIKGLITNTIIDPRTSN-PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121 + + +YV + + + PV + +R P T +LA+ A F ++ +GI LG+ Sbjct: 64 DFFVVRYVKWLANTLRGDLGWSLVGKEPVKDALLRRLPYTVELALYAIFPVVFVGIWLGV 123 Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181 +A+ R ++D +RIFA++G S P F G L+L IF+ + + E + P Sbjct: 124 KAAVHRGKFLDHFIRIFAVVGWSFPDFVFGLLVLMIFYSILNWLPPGNLSMWAEEVIKSP 183 Query: 182 ---------MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDY 232 IDALL G ++F L P TL +L R R+S LE L+ +Y Sbjct: 184 EFHRYTKLITIDALLNGRLDIFWDGLKHLIGPIITLSWLWWAYLLRITRSSMLEVLNKEY 243 Query: 233 VQFLKAKGVPK-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQ 291 V+ +AKG+P+ + I +HA +NAL+P+ TV G GL GT I ETVF G+GS+ Q Sbjct: 244 VRTARAKGLPEDVVINKHARRNALIPVTTVAGGMVIGLFSGTVIVETVFNRTGVGSFTAQ 303 Query: 292 AIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 A LD+ V+A ++ I V NLI+DILYA+IDPR+R Sbjct: 304 AALQLDYASVMASALFFSTILVVGNLIIDILYALIDPRIR 343 >pir||S47696 nickel transport system permease protein nikB - Escherichia coli >gi|466613|gb|AAB18452.1| (U00039) nikB [Escherichia coli] >gi|1789888|gb|AAC76502.1| (AE000423) transport of nickel, membrane protein [Escherichia coli K12] Length = 314 Score = 183 bits (459), Expect = 3e-45 Identities = 111/330 (33%), Positives = 174/330 (52%), Gaps = 29/330 (8%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA--GGEKATKEAIELIKKMYHLDE 63 ++++RR L IP ++ ++I+FL+ DPA + T E + + M LD+ Sbjct: 3 RYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGLDQ 62 Query: 64 PWYDQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 P Y QY +L K L + I + PV+ D+ P T +LA A IL+ +PLGI Sbjct: 63 PLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLGIW 122 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +A R+ D VR A LGVS P FWL +L++ F V ++ Sbjct: 123 AARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV------------------YLQW 164 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV- 241 + A+ G + QH+ LP ++ F+ + + AR +R S L+ +V + + +G+ Sbjct: 165 LPAMGYGGW----QHII---LPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLN 217 Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 K RH L+NA +P++T +G+ G L+GGT I E +F PG+G YAV AI N D+PV+ Sbjct: 218 DKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVI 277 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 T + +++V NLIVD+L A +DPR+R Sbjct: 278 QCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307 >emb|CAC05748.1| (AL391751) putative peptide transport system integral membrane protein [Streptomyces coelicolor] Length = 307 Score = 181 bits (455), Expect = 9e-45 Identities = 102/330 (30%), Positives = 165/330 (49%), Gaps = 29/330 (8%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 ++++RR+L IP IG TL++FL+ + DP G + ++ + LD+P Sbjct: 3 RYVVRRLLQMIPVFIGATLLIFLMV-NVMGDPIAGLCGDRECDPATAAQLRHEFGLDQPV 61 Query: 66 YDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 + QY + + T PV +G FPVT +L I+A F +++GI LG+++ L Sbjct: 62 WQQYATYMGNVFTGDFGTAFNGQPVTELMGTAFPVTIRLTIVAILFEIVVGIILGVLTGL 121 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLT--TIAGVPPFPEPITHIPMI 183 +R +DT V + L+ +S P F G L+ + VK+ ++ F E I Sbjct: 122 RRGRPVDTGVLLLTLVVISVPTFVTGLLLQLLLGVKWGWIDPAVSSEAAFGELI------ 175 Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243 +PG L + + R R S E SDYV+ AKG+P+ Sbjct: 176 -------------------VPGLVLASVSLAYVTRLTRTSIAENRRSDYVRTAIAKGLPR 216 Query: 244 MRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 R+ RH L+N+L+P+VT +G G L+GG +TE +F + G+G Q I + VV Sbjct: 217 HRVITRHLLRNSLIPVVTFIGTDIGALMGGAIVTERIFNIHGVGYQLYQGILRQNTQTVV 276 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + ++++ NL+VD+LYAV+DPR+RY Sbjct: 277 GFVTVLVLVFLVANLVVDLLYAVLDPRIRY 306 >dbj|BAA94700.1| (AB026907) dipeptide transporter DppB homolog [Ochrobactrum anthropi] Length = 313 Score = 178 bits (447), Expect = 8e-44 Identities = 100/331 (30%), Positives = 178/331 (53%), Gaps = 31/331 (9%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH---LD 62 +++I R+L IP ++GVT+ VFL + +P DP + G E + +YH +D Sbjct: 5 RYVISRLLHAIPVVLGVTICVFLTIHLVPGDPVRIMMHGRIGDDE----VAAIYHQLGMD 60 Query: 63 EPWYDQYVFLIKGLITNTIIDPRTSNPVMTDI--GKRFPVTFQLAIIAFFFILIIGIPLG 120 P QY ++ +T + +TD+ K +P LA +LI IPLG Sbjct: 61 RPLLVQYFDFVRHALTGNLGTSIVQKAPVTDLVLEKLWPTLLLLAFSTLISVLI-AIPLG 119 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 ++++ RN W D +R+ + +G + P++W+G L++ +F + I+G+ Sbjct: 120 LVASFYRNRWPDHAIRLVSSIGFAMPSYWIGLLLILLFGLWLGWFPISGIG--------- 170 Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 +G+ E+ L +LP T+ V + +R+S L+ L+S+Y++ +AKG Sbjct: 171 -------QGHLEI----LHHLFLPALTISLFLGPVLIQSLRSSMLDVLTSEYIEVARAKG 219 Query: 241 VPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299 V + RI +H ++NAL+P++TVL + LL G I E VFGLPG+GS V+++ D+P Sbjct: 220 VSEWRILTKHVMRNALIPVITVLAINISWLLSGAVIVEYVFGLPGLGSLLVRSVGYRDYP 279 Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRV 330 ++ ++ ++ ++ V INL+ D+ Y ++D RV Sbjct: 280 LIQGLSLVFGVLVVVINLLADLSYMLVDRRV 310 >gi|10955082 agaB [Agrobacterium tumefaciens] >gi|11277276|pir||T45531 agaB protein [imported] - Agrobacterium tumefaciens plasmid pTi15955 >gi|2665707|gb|AAB88467.1| (AF242881) agaB [Agrobacterium tumefaciens] Length = 323 Score = 177 bits (445), Expect = 1e-43 Identities = 108/337 (32%), Positives = 178/337 (52%), Gaps = 24/337 (7%) Query: 1 MANLKKFLIR---RILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEK-ATKEAIELIK 56 M L F+I R++T + + + +VF I Y +P DP G E + EA+ ++ Sbjct: 1 METLSTFVITLGSRLITALVQLWVIATLVFSIMYIMPGDPVLLLLGPESNPSPEAVAAMR 60 Query: 57 KMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIG 116 LD+P QY+ + + + + V+ I P T +LA A IIG Sbjct: 61 HQLGLDQPVMSQYLKWLGNAASGDLGNSVDGVSVVEYITASIPKTMELATAAIILASIIG 120 Query: 117 IPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEP 176 +P+GI +AL+R ++D+++ + LG+S P + LG L++ +F +K +G Sbjct: 121 VPIGIAAALRRGRFLDSLLTSLSTLGISLPVYILGSLLILMFSLKLGWLPSSGYTDISRS 180 Query: 177 ITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVT-ARFVRNSFLEALSSDYVQF 235 + H + LP TLG LG+ + AR R+S LE L D+V+ Sbjct: 181 VF-----------------LHFQKLTLPAVTLG-LGLAASIARMTRSSMLEILGRDFVRS 222 Query: 236 LKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294 L+A+G+ + R I+ H L+NA +PIVT++GLQ G L+GGT + E ++ PG+ + V A+ Sbjct: 223 LRARGMRERRVIWVHVLRNAAIPIVTIIGLQLGNLMGGTVLVEALYNWPGLSTLLVTAVS 282 Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 N ++P+V A +++ INL VDILY+++DPR+R Sbjct: 283 NRNYPLVQGSILTIAALFILINLCVDILYSLLDPRIR 319 >pir||T34758 oligopeptide transport system integral membrane protein - Streptomyces coelicolor >gi|3402245|emb|CAA20181.1| (AL031184) oligopeptide transport system integral membrane protein [Streptomyces coelicolor A3(2)] Length = 332 Score = 177 bits (444), Expect = 2e-43 Identities = 119/350 (34%), Positives = 177/350 (50%), Gaps = 48/350 (13%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAG--------GEKATKEAIELIKKM 58 +LIRR+ ++ + L+VF I + +P WAG G++A A+E +++ Sbjct: 4 YLIRRLFAAAVMLVVIILVVFCIFFLVPK-----WAGVDIALNFVGKQADPAAVEGVREK 58 Query: 59 YHLDEPWYDQYVFLIKGLITNTIIDP----------------RTSNPVMTDIGKRFPVTF 102 L +P + Q KG+ +T V + +RFPVT Sbjct: 59 LGLGDPVFVQAWEFFKGIFAGRTYAAGGDVTHCAAPCFGYSFKTEQSVWPVLTERFPVTL 118 Query: 103 QLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKY 162 LA+ A LI G+ G++SALKR + D + AL GVS P ++ G L L IF Y Sbjct: 119 ALALGAAVLWLIFGVAAGVLSALKRGTLWDRGAMVVALAGVSLPIYFTGLLSLAIF--SY 176 Query: 163 RLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRN 222 L I G +P+ D+L L LP TL FL + AR R Sbjct: 177 GLGWIDG--------EFVPLEDSLTGW--------LGGMILPWITLAFLYAAMYARITRA 220 Query: 223 SFLEALSSDYVQFLKAKGVPK-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFG 281 + LE L DY++ +AKG+ + + I +HA+++ L P++T+LG+ G L+GG +TET F Sbjct: 221 TMLEILGEDYIRTARAKGLKEQVVISKHAMRSTLTPLLTMLGMDLGALMGGAILTETTFS 280 Query: 282 LPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 LPG+G + AI+N D P ++ V I ++ + NL+VDILYAVIDPRVR Sbjct: 281 LPGLGQKVLDAIKNHDLPFILGVVLITSLAVLIANLVVDILYAVIDPRVR 330 >pir||E70343 transporter (OppBC family) - Aquifex aeolicus >gi|2983140|gb|AAC06743.1| (AE000692) transporter (OppBC family) [Aquifex aeolicus] Length = 327 Score = 176 bits (443), Expect = 2e-43 Identities = 116/329 (35%), Positives = 172/329 (52%), Gaps = 16/329 (4%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 KF++ R+L IPT++GVT + FLI P D + + E IE +K +Y LD+P Sbjct: 3 KFILFRVLQAIPTLLGVTFLSFLIIKLAPGDYLDQLRLNPQISPETIERLKHLYGLDKPL 62 Query: 66 YDQYVFLIKG-LITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124 QY +K L + + PV I +R P T L++ + F ++ IPLG ++A Sbjct: 63 LVQYFLWLKNALFFDLGYSFQYHAPVAELILERIPNTLLLSVSSALFAWLLSIPLGTLAA 122 Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGV--PPFPEPITHIPM 182 K NS D V F+ +S P+F+L +L+L+ F K + + G+ P F + + Sbjct: 123 FKENSLFDRFVVGFSYTFMSVPSFFLAFLLLF-FASKTGILPVGGMQSPNFEQLSIPEKV 181 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 +D L +HL +P TLG + + R VR+S LE LSS V LKAKGV Sbjct: 182 LDIL---------KHLI---IPSLTLGLVSLASLTRLVRSSVLEILSSPMVTMLKAKGVG 229 Query: 243 KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 + RH LKNA+ P T+LG + L+ G + E + G PGMG + A+ + D +V+ Sbjct: 230 TFTLVRHVLKNAMNPFTTLLGYEIASLISGAALIEIIVGWPGMGMLMLNAVLSQDLFLVM 289 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331 +I I+ + NLI D+L A IDPRVR Sbjct: 290 GGLYIGTIMLLVGNLIADLLLAYIDPRVR 318 >sp|P24138|OPPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB >gi|7442405|pir||H69668 oligopeptide transport system permease protein oppB - Bacillus subtilis >gi|2633498|emb|CAB13001.1| (Z99110) oligopeptide ABC transporter (permease) [Bacillus subtilis] Length = 311 Score = 175 bits (438), Expect = 9e-43 Identities = 105/330 (31%), Positives = 170/330 (50%), Gaps = 33/330 (10%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 K++ RR++ I T+ + + F + P P ++G +K E + Y LD+P Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGP---FSGEKKLPPEIEANLNAHYGLDKPL 59 Query: 66 YDQYVFLIKGLITNTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 + QYV +K + P V I FPV+F L A L +G+ G+I Sbjct: 60 FVQYVSYLKS-VAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVI 118 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +AL N W D V I + G+S P+F + ++ Y+F +K L +AG + Sbjct: 119 AALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSW--------- 169 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 A +LP L + M AR R+S +E L+SDY++ KAKG+ Sbjct: 170 ----------------AYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLS 213 Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + + RHA++NAL+P+VT +G +L G+ I ET+FG+PG+G++ V +I N D+ V+ Sbjct: 214 RPAVTVRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVI 273 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 + VT +++I + LIVD+LY +IDPR++ Sbjct: 274 MGVTVFFSVILLLCVLIVDVLYGIIDPRIK 303 >sp|P42062|APPB_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPB >gi|2126889|pir||I40546 oligopeptide ABC transporter (permease) appB - Bacillus subtilis >gi|677946|gb|AAA62359.1| (U20909) AppB [Bacillus subtilis] >gi|2633493|emb|CAB12996.1| (Z99110) oligopeptide ABC transporter (permease) [Bacillus subtilis] Length = 317 Score = 174 bits (437), Expect = 1e-42 Identities = 103/332 (31%), Positives = 173/332 (52%), Gaps = 24/332 (7%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 ++IRR L IP ++G+T++ F+I P DP + + + + I+K Y L++P Y Sbjct: 4 YIIRRTLMSIPILLGITILSFVIMKAAPGDPMTLMMDPKISQADREQFIEK-YGLNDPQY 62 Query: 67 DQYVF----LIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 QY+ +++G +I+ R PV I R P T L +++ L+I IP G++ Sbjct: 63 VQYLKWLGNMVQGDFGTSIV--RKGTPVSELIMARLPNTLLLMLVSTILALMISIPFGVL 120 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 SA + S ID + + +G++ P FW G +++ + V GV Sbjct: 121 SAKRPYSKIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGGV------------ 168 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 L F +F + LP F L M R+ R++ L+ L+ DY++ +AKG Sbjct: 169 --ETLNTEFNIF-DRIHHLILPAFVLATADMAGLTRYTRSNMLDVLNQDYIRTARAKGFK 225 Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAV-QAIQNLDFPV 300 + R+ ++H L+NAL+P++T+ GL +GG+ + E +F PG+G V A Q + Sbjct: 226 ENRVLFKHGLRNALLPVITIFGLMIPSFIGGSVVVEQIFTWPGLGKLFVDSAFQRTIIRI 285 Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 ++A+T I A++ V NLI DILYA++DPR+ Y Sbjct: 286 IMAMTVISAVLVVVGNLIADILYAIVDPRIEY 317 >gi|10955090 moaB [Agrobacterium tumefaciens] >gi|11277277|pir||T45537 moaB protein [imported] - Agrobacterium tumefaciens plasmid pTi15955 >gi|2665713|gb|AAB88473.1| (AF242881) moaB [Agrobacterium tumefaciens] Length = 313 Score = 173 bits (435), Expect = 2e-42 Identities = 103/331 (31%), Positives = 179/331 (53%), Gaps = 27/331 (8%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 +L +R+ + T++ V ++FL+ +P DP G ++A+ E++ +++ LD+P Sbjct: 4 YLAKRLCFAVVTLLSVLTLIFLMVRVLPGDPVLMILG-DQASPESVAALRQRLGLDQPIG 62 Query: 67 DQYV-FL---IKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 QYV FL +KG + N+++ T PV ++ P T +L + LI+G+P G+ Sbjct: 63 LQYVQFLGSAVKGDLGNSMV---TGRPVTEEVMSVLPYTLELTFASLVVGLILGVPTGVW 119 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +A+KR+ D ++R+ +L+G+S P F ++L +F + R P+ Sbjct: 120 AAVKRSKLPDYILRLISLIGLSLPGFVSAIVLLIVFAINLRW---------------FPV 164 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV- 241 I A G + + + LP +L + M R R++ LE L+ D+V+ +AKG Sbjct: 165 ISA---GTGDGIVNRVWQMTLPVISLALIMMAYITRVTRSAMLEVLNQDFVRTARAKGAR 221 Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 P + I+RHAL N L+PI TV+GL G L+G + +TE VF PG+G + A+ D+ ++ Sbjct: 222 PSVVIWRHALGNCLIPISTVVGLYLGILIGNSVLTEIVFSRPGLGKLILTALSQRDYTLL 281 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + +Y +I V +NL D+ Y + DPRV+Y Sbjct: 282 QGMVVVYTLIVVIVNLATDLTYGLFDPRVQY 312 >pir||T03433 probable transport protein accD - Agrobacterium tumefaciens plasmid pTiC58 >gi|3153180|gb|AAC17200.1| (AF010180) AccD [Agrobacterium tumefaciens] Length = 306 Score = 173 bits (435), Expect = 2e-42 Identities = 114/327 (34%), Positives = 170/327 (51%), Gaps = 31/327 (9%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F++ R++ I ++ VF+I ++ DPA+A G E AT EA+ + + LD Sbjct: 4 FILARLVRAIIVMMLTVTFVFIIL-RLGGDPARAMLG-ENATPEALAAFRTAWGLDRSIP 61 Query: 67 DQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 +Q+ ++L L + + V T I +R P T L I AF +++GIP GII+A+ Sbjct: 62 EQFLIYLASALRGDFGVSAADGREVFTVISERIPKTLTLTISAFVLSILVGIPAGIIAAV 121 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185 +R+S D V A+LG S P F LG ++++F V +R+ +G + I Sbjct: 122 RRDSAADKSVMAGAVLGYSVPNFLLGLTLIFVFAVWFRVLPSSGSSTWQHAI-------- 173 Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMR 245 LP T G + A R +E L Y+ +A G+PK Sbjct: 174 -----------------LPVATFGLVNAAAIALPFR--VIEVLEQPYIAAARADGIPKWE 214 Query: 246 IY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304 + RHAL NA +P+VT+LG GLLGG+ I ETVF PG+GS V+AI D VV A+ Sbjct: 215 VVIRHALPNAAIPMVTMLGFVAAGLLGGSAIVETVFAWPGLGSGFVRAITLSDLNVVQAM 274 Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVR 331 ++ VTINLIVD+LYAV++P++R Sbjct: 275 ILLFTAFMVTINLIVDVLYAVLNPKIR 301 >pir||B38447 oligopeptide permease oppB homolog - Bacillus subtilis >gi|580897|emb|CAA39788.1| (X56347) OppB [Bacillus subtilis] Length = 311 Score = 173 bits (434), Expect = 3e-42 Identities = 105/330 (31%), Positives = 170/330 (50%), Gaps = 33/330 (10%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 K++ RR++ I T+ + + F + P P ++G +K E + Y LD+P Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGP---FSGEKKLPPEIEANLNAHYGLDKPL 59 Query: 66 YDQYVFLIKGLITNTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 + QYV +K + P V I FPV+F L A L +G+ G+I Sbjct: 60 FVQYVSYLKS-VAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALGLGVLFGVI 118 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +AL N W D V I + G+S P+F + ++ Y+F +K L +AG + Sbjct: 119 AALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSW--------- 169 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 A +LP L + M AR R+S +E L+SDY++ KAKG+ Sbjct: 170 ----------------AYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLS 213 Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + + RHA++NAL+P+VT +G +L G+ I ET+FG+PG+G++ V +I N D+ V+ Sbjct: 214 RPALTVRHAIRNALLPVVTYMGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVI 273 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 + VT +++I + LIVD+LY +IDPR++ Sbjct: 274 MGVTVFFSVILLLCVLIVDVLYGIIDPRIK 303 >dbj|BAB04067.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus halodurans] Length = 305 Score = 172 bits (432), Expect = 5e-42 Identities = 101/328 (30%), Positives = 176/328 (52%), Gaps = 29/328 (8%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F+ +R+ IP + ++ IVF + + + +P A E A++E I+ + LD+P+ Sbjct: 4 FVFKRLAEMIPVLFIISFIVFALVF-VAGNPV-ALMLPEDASQEDIDQLTASLGLDQPFL 61 Query: 67 DQYVFLIKGLITNTIIDP-RTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 QY + L+ + R + + + +R P T +LA+ A + + IPLG+ SA Sbjct: 62 VQYGKYLLNLVQGDFGESFRYNTSALPLVLERLPATLELAVAALVLAVAMAIPLGVWSAT 121 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDA 185 K++S +D + +++G + P FWLG +++ IF V ++G Sbjct: 122 KQHSPVDLLAAGGSVIGKAMPNFWLGIMLILIFSVMLGWFPVSG---------------- 165 Query: 186 LLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK-M 244 RG L LP TL R +R+S +E L+ DY++ ++KG+ + M Sbjct: 166 --RGT-------LGHLVLPAMTLATGIAAEITRLLRSSMIEILNQDYIRTARSKGIREGM 216 Query: 245 RIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAV 304 +Y+HA +N+L+P+VT++ LQ ++GGT ITETVF PG+G +QA+ D +V A Sbjct: 217 VVYKHAFRNSLIPLVTIVALQTSTVVGGTLITETVFSWPGLGQLLIQAVHTRDMAIVQAC 276 Query: 305 TFIYAIIYVTINLIVDILYAVIDPRVRY 332 F+ AI+ + +NL+ D+LY ++DPR++Y Sbjct: 277 VFVIAILVIFMNLVADVLYRLLDPRIKY 304 >pir||C82242 oligopeptide ABC transporter, permease protein VC1092 [imported] - Vibrio cholerae (group O1 strain N16961) >gi|9655561|gb|AAF94251.1| (AE004190) oligopeptide ABC transporter, permease protein [Vibrio cholerae] Length = 306 Score = 172 bits (431), Expect = 6e-42 Identities = 106/333 (31%), Positives = 173/333 (51%), Gaps = 35/333 (10%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 KF+ +RI IPT++ + I F + P +P ++ E + I Y LD+P Sbjct: 3 KFIAKRIFEAIPTMLVLITISFFLMRYAPGNP---FSSERPLPPEVMANINAKYGLDKPV 59 Query: 66 YDQYVFLIKGLITNTI-----IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 +QY+ + ++ T N + I PV+ ++ + AF F +I+G+ +G Sbjct: 60 SEQYLTYLTNIVQGDFGPSFKYKDYTVNEL---IASALPVSVKIGLAAFVFTVIMGVTVG 116 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 I+ALK+N+WID + A+LGV P+F L +++YIF +++ L G Sbjct: 117 TIAALKQNTWIDYTIMSTAMLGVVMPSFVLAPVLIYIFAIQFSLFPAGGWQD-------- 168 Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 G FE LP + L + AR R S +E L+S++++ +AKG Sbjct: 169 --------GGFEYMA-------LPVLGMSLLYVATFARITRGSMIETLNSNFIRTARAKG 213 Query: 241 VPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299 + I +HALK AL+P+V+ +G F G++ G+ + ET+FGLPG+G V A N D+ Sbjct: 214 LSYGYIVVKHALKPALLPVVSYMGPAFVGIITGSVVIETIFGLPGIGKLFVNAAFNRDYS 273 Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 +V+ VT + +++ N IVDIL A IDP++RY Sbjct: 274 LVMGVTILIGFLFILFNAIVDILLAYIDPKIRY 306 >emb|CAC11408.1| (AL445063) dipeptide transport system permease protein (DPPB) related protein [Thermoplasma acidophilum] Length = 343 Score = 171 bits (429), Expect = 1e-41 Identities = 106/334 (31%), Positives = 174/334 (51%), Gaps = 9/334 (2%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADP---AKAWAGGEKATKEAIELIKKMYHLDE 63 F+IRR + I T++ + + +F + + I +P A+ +AG A++ + I+K Y L+ Sbjct: 8 FIIRRAIYAIFTLLILIVFIFTLIHIIAPNPLALARLYAGNPHASQSELIGIEKKYGLNL 67 Query: 64 PWYDQYVFLIKGL-ITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 P YDQ + IK + I N D PV+ IG+ P+T + + +IIG+ G Sbjct: 68 PIYDQVINYIKDVFIGNLGYDYLHDQPVLKLIGEYLPITLEFVLTGIVLSVIIGLFTGAY 127 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLG-YLMLYIFFVKYRLTTIAGVPPFPEPITHI- 180 +A +R D ++ L S P F L L LYI + L V P +P ++ Sbjct: 128 AAARRRKPADYTIKGLYLATWSMPTFLLAAVLQLYIAYDLKLLPATGMVNPTLKPPPNVL 187 Query: 181 --PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKA 238 P+++A+ ++ + LP ++ L GV R R++ L+ + DY + Sbjct: 188 AFPLLNAIYAHDWVYASSVIHHMILPTLSVALLSFGVITRLTRSTMLDIMDMDYFRLTIM 247 Query: 239 KGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297 KG+P+ + +Y AL+NA +P+VT + L F +GG + E +F GMG Y VQA+ NLD Sbjct: 248 KGIPRRKAVYGVALRNAAIPLVTYIVLAFAYAMGGAVVIEDIFSYHGMGYYIVQAVYNLD 307 Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 +P ++ T I AI + NL+ D+LY ++DPRVR Sbjct: 308 YPGILGTTIIIAIAVIVANLVADVLYGILDPRVR 341 >dbj|BAB05516.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans] Length = 315 Score = 169 bits (424), Expect = 4e-41 Identities = 100/330 (30%), Positives = 169/330 (50%), Gaps = 29/330 (8%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEK--ATKEAIELIKKMYHLDE 63 + IRR+L ++ VT + FL P DP ++ ++E +E +++ ++ Sbjct: 3 RIFIRRLLEVALFVLFVTFVSFLFVRLAPGDPVLTILNVDELSVSQEEVETLREDMGFNK 62 Query: 64 PWYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 P QY +L+ + + + T PVM I K P T +L + + +LI+ IPLG + Sbjct: 63 PLLVQYGHWLLDFVRLDFGVSYVTGQPVMDMIMKGLPATLELTVGSLIVMLIVSIPLGSL 122 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +AL RN WID + RI A+LG + P+FWLG + + +F V+ G F I Sbjct: 123 AALYRNRWIDHLSRILAILGAAIPSFWLGLIFIDLFAVRLNWLPTMGRDGFVSLI----- 177 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 LP TLG V R +R+S L++LS ++++ +A+G+ Sbjct: 178 --------------------LPSVTLGLAISSVYVRLLRSSLLDSLSQEFIRAARARGLS 217 Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + RI+ HAL+++L P++TV G+ G L+GG + E +F PG+G V AI+ D+P++ Sbjct: 218 EKRIFVAHALRHSLPPVITVFGVSLGSLIGGVVVIEVLFAYPGIGKLVVDAIRQRDYPLI 277 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 + A+I IN VD+ Y ++P ++ Sbjct: 278 QGYILVMALIVFVINTSVDLSYRYLNPEMK 307 >gb|AAF73091.1|AF103793_2 (AF103793) transmembrane protein OppB [Listeria monocytogenes] Length = 309 Score = 168 bits (420), Expect = 1e-40 Identities = 101/332 (30%), Positives = 170/332 (50%), Gaps = 37/332 (11%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 K+ ++R+L + T+ + + F++ +P P + EK + E I + + Y L++ Sbjct: 3 KYTLKRVLYMLITLFIIASVTFVLMKFLPGTP---YRNQEKLSDEQIHMTNEKYGLNDSI 59 Query: 66 YDQYVFLIKGLITNTI-----IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 QY + GL+ + +D R PV + + QLA+ A F +I GI LG Sbjct: 60 PVQYFNYMTGLVKGDLGVSFQLDNR---PVSEILSALIGPSVQLALEAMAFGVIFGILLG 116 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 +I+A+ +N W D A+LG S P+F ++ Y K ++ +AG F + I Sbjct: 117 VIAAMYQNRWPDYTSTFIAILGKSVPSFVFATVLQYWLGAKLQIFPVAGWGTFADTI--- 173 Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 LP F L + ARF+R ++ +SDYV KAKG Sbjct: 174 ----------------------LPAFALAMFPLATAARFMRTELIDVFASDYVLLAKAKG 211 Query: 241 VPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299 + + +HA++NAL+P++TVLG L+ G+ + E ++ +PG+GS V +IQ D+P Sbjct: 212 NSRTEVAVKHAIRNALIPLITVLGPLSVALMTGSLVIENIYSIPGIGSQFVSSIQTNDYP 271 Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 V++ T ++A++ V + L+VDILY +IDPR+R Sbjct: 272 VIMGTTILFAVMLVFVILVVDILYGLIDPRIR 303 >pir||C70141 oligopeptide ABC transporter, permease protein (oppB-1) homolog - Lyme disease spirochete >gi|2281460|gb|AAC46285.1| (AF000366) oligopeptide permease homolog B [Borrelia burgdorferi] >gi|2688245|gb|AAC66724.1| (AE001140) oligopeptide ABC transporter, permease protein (oppB-1) [Borrelia burgdorferi] Length = 306 Score = 167 bits (418), Expect = 2e-40 Identities = 99/330 (30%), Positives = 175/330 (53%), Gaps = 31/330 (9%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIEL-IKKMYHLDEP 64 KF +++IL IPT++ + + F + P P + EK ++ + + YHLD+P Sbjct: 3 KFTLKKILGIIPTLLVIIFLCFFVMRMAPGSPFDS----EKPIDPQVKARLMEKYHLDKP 58 Query: 65 WYDQYVFLIKGLITNTIIDPRTSNPVMTD---IGKRFPVTFQLAIIAFFFILIIGIPLGI 121 +Y Q + I + + P +T I FP + L +I+ L IGIP+GI Sbjct: 59 FYIQAFYYITNALRGDL-GPSLKKKDLTVSQYIKLGFPKSLTLGVISLIISLSIGIPIGI 117 Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181 ++A+ +N+++D ++ A+LG+S P F +G ++ Y F +K+ L +G IT Sbjct: 118 LAAIYKNTYVDYIITSIAILGISIPLFVIGPILQYFFAIKWGLLYTSGW------ITE-- 169 Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241 RG F + LP TL + + AR +R S LE + SD+++ +AKG+ Sbjct: 170 ------RGGF-------SNLILPIITLSMPNVAIFARIIRGSMLEIIQSDFIRTARAKGL 216 Query: 242 P-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300 K + +H L+ A++P+V+ +G F ++ G+ + E +F + GMG + ++ N D+PV Sbjct: 217 SFKKIVIKHMLRGAMLPVVSYIGPAFAAIISGSVVIEKIFRIAGMGMFITESALNRDYPV 276 Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRV 330 ++ +Y+II + LI DI+Y ++DPRV Sbjct: 277 LMGGLLVYSIILLISILISDIIYKILDPRV 306 >pir||F72215 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4982325|gb|AAD36812.1|AE001813_4 (AE001813) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 341 Score = 165 bits (413), Expect = 8e-40 Identities = 98/340 (28%), Positives = 176/340 (50%), Gaps = 40/340 (11%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPAD----------PAKAWAGGEKATKEAIELI 55 KFL++R+LT +++ V +I +++ + P + A+ + A + ++ Sbjct: 26 KFLLKRLLTIAISMVVVIVITYVLMWLAPGNFFELQRVRDAIARVTTPDDPAYQATLKGF 85 Query: 56 KKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD---IGKRFPVTFQLAIIAFFFI 112 ++ Y L+ P + Q + +KG + P S+P I ++FP+TF LA+ + F Sbjct: 86 EERYGLNNPLWKQILMYLKGAVVFKF-GPSFSDPARNIEDLIKEKFPITFTLALSSILFA 144 Query: 113 LIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPP 172 L++G+PLGI++ALK+N+WID +++GV+ P++ + ++ IF + +G Sbjct: 145 LVVGVPLGILAALKKNTWIDYTAMTVSVIGVAIPSYVVAVFLILIFSIYLGWLPTSGWEG 204 Query: 173 FPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDY 232 I LP L + ARF R S L+ L+ D+ Sbjct: 205 IRTKI-------------------------LPTIALALGPLASVARFTRVSLLDTLNQDF 239 Query: 233 VQFLKAKGVP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQ 291 ++ AKG + I +HAL+ +++P+VT++G Q L+ GT E +F +PG+G Sbjct: 240 IRTAYAKGGDDRTVIMKHALRPSMIPLVTIVGPQMAYLMVGTVWVENIFRIPGLGQLFAN 299 Query: 292 AIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 A D+P++V TFI A+ + +NLIVD+LYA++DPR++ Sbjct: 300 AAVTRDYPLLVTSTFILALTVMIMNLIVDVLYAILDPRIK 339 >sp|P08005|OPPB_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB >gi|72438|pir||QREBOB oligopeptide transport system permease protein oppB - Salmonella typhimurium >gi|47803|emb|CAA29040.1| (X05491) Opp B (AA1-306) [Salmonella typhimurium] Length = 306 Score = 164 bits (411), Expect = 1e-39 Identities = 103/330 (31%), Positives = 168/330 (50%), Gaps = 29/330 (8%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 KF++RR L IPT+ + I F + P P + G E + I+ YHL++P Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERALPPEVLANIEAKYHLNDPI 59 Query: 66 YDQYVFLIKGLITNTIIDP-RTSNPVMTD-IGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 QY +K L + + + D + FPV+ +L AF +IIG+ G+I+ Sbjct: 60 MTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIA 119 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183 ALK+N+ D V FA+ GV P+F + L++ +F + + G +PM+ Sbjct: 120 ALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLPGGGWNGGALKFMILPMV 179 Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243 L + AR R S +E L S++++ +AKG+P Sbjct: 180 -----------------------ALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPM 216 Query: 244 MR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 R I+RHALK AL+P+++ +G F G++ G+ + ET++GLPG+G V N D+ +V+ Sbjct: 217 RRIIFRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL 276 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 ++T + + + N IVD+LYAVIDP++RY Sbjct: 277 SLTILVGALTILFNAIVDVLYAVIDPKIRY 306 >pir||F75529 probable peptide ABC transporter, permease protein - Deinococcus radiodurans (strain R1) >gi|6458040|gb|AAF09943.1|AE001896_8 (AE001896) peptide ABC transporter, permease protein, putative [Deinococcus radiodurans] Length = 340 Score = 164 bits (411), Expect = 1e-39 Identities = 112/338 (33%), Positives = 179/338 (52%), Gaps = 14/338 (4%) Query: 7 FLIRRILTFIPTIIGVT--LIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEP 64 F++RR++ IP ++ V L+V + P A + G+ IE I L +P Sbjct: 4 FIVRRLIQ-IPLVMVVLSLLLVGITQLLTPEQRAAPYIRGDNQAAR-IEQIIDQRGLRDP 61 Query: 65 WYDQYVFLIKGLITNTIIDPRTSNPVMTD-IGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 + QY + + R S + D I +R P T +L ++ IL++ + LG +S Sbjct: 62 FPVQYGRWAASAVQGDLGFSRASGKDVIDTIKERLPNTIELTLLTAIPILLLSVWLGSLS 121 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG----VPPFP----E 175 AL ++ +ID V+R+ +LG S P F LG ++L IF+ AG V F + Sbjct: 122 ALNKDKFIDQVLRVLTILGYSLPTFVLGIVLLAIFYAYLGWLPGAGQLEVVNQFAVSDMK 181 Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235 T + +DALL G + + + LP TL + + +RNS L+ LSSDY++ Sbjct: 182 RYTGMLTVDALLNGRWSVAWDVVRHMILPATTLAIVSSADIIKVMRNSMLDVLSSDYIRT 241 Query: 236 LKAKGV-PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294 +AKG+ P + +HA +NAL+P++T+ GL LL G+ ITET+F PG+G + VQ+ Sbjct: 242 ARAKGLTPGVVNRKHARRNALLPVITLGGLLIINLLSGSLITETIFAYPGIGQWVVQSAL 301 Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 +D V+ + A+I V +N +VDILY ++DPRVR+ Sbjct: 302 QIDLAGVLGFALLSALIVVVMNTLVDILYGIVDPRVRF 339 >pir||B75381 peptide ABC transporter, permease protein - Deinococcus radiodurans (strain R1) >gi|6459333|gb|AAF11132.1|AE002000_8 (AE002000) peptide ABC transporter, permease protein [Deinococcus radiodurans] Length = 333 Score = 163 bits (409), Expect = 2e-39 Identities = 100/331 (30%), Positives = 170/331 (51%), Gaps = 7/331 (2%) Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDE 63 L +++RR+L FIPT + T++ F I P D E IE +++ + LD+ Sbjct: 7 LLPYILRRVLQFIPTFVLATMLAFFITQAAPGDFLSQLKENPSVKPETIERLRREFGLDQ 66 Query: 64 PWYDQYVFLIKGLITNTIIDP-RTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 P + QY++ K L+ + D + PV I F + L +I+ + IP+G+ Sbjct: 67 PVFVQYLYWFKNLLMGDLGDSFQYKRPVAEVIQGPFLNSLILVVISTVLHFAVSIPVGVY 126 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 SALK S+ D V F+ +G+ P+F+ G L +Y ++ + +P + + +P Sbjct: 127 SALKPYSFWDRVFTFFSYIGLGIPSFFFGLLAIYAM-LQLKQQFGWDLPLGGKSSSALPT 185 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 + LR +++F L +P L G+ +RF+R LE L DY++ +AKG+ Sbjct: 186 DISPLRHVWDVFLHAL----IPSIILVLRGISGESRFIRGQMLEVLGQDYIRTARAKGLN 241 Query: 243 KMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + Y+HA K A++P + LG L+GG E VF PG+ + A+ N D ++ Sbjct: 242 DRAVTYKHAFKLAMIPTIAGLGGLLPALIGGAGFLEIVFNWPGLTPLQLTALGNQDIYIL 301 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 +AVT + ++Y+ NL+ D+L A +DPR+RY Sbjct: 302 MAVTALGTLLYMIGNLLSDLLLAAVDPRIRY 332 >dbj|BAA14776.1| (D90763) Oligopeptide transport system permease protein OppB. [Escherichia coli] >gi|1805525|dbj|BAA16039.1| (D90852) Oligopeptide transport system permease protein OppB. [Escherichia coli] Length = 306 Score = 162 bits (407), Expect = 4e-39 Identities = 105/331 (31%), Positives = 165/331 (49%), Gaps = 31/331 (9%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 KF++RR L IPT+ + I F + P P + G E + I+ YHL++P Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAKYHLNDPI 59 Query: 66 YDQYVFLIKGLITNTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 QY +K L DP V + FPV+ +L AFF +I+G+ G+I Sbjct: 60 MTQYFSYLKQLAHGDF-DPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVI 118 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +ALK+N+ D V A+ GV P+F + L++ IF + G +PM Sbjct: 119 AALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPM 178 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 + L + AR R S +E L S++++ +AKG+P Sbjct: 179 V-----------------------ALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLP 215 Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 RI RHALK AL+P+++ +G F G++ G+ + ET++GLPG+G V N D+ +V Sbjct: 216 MRRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLV 275 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 +++T + + + N IVD+LYAVIDP++RY Sbjct: 276 LSLTILVGALTILFNAIVDVLYAVIDPKIRY 306 >pir||C71130 probable oligopeptide transport permease protein APPB - Pyrococcus horikoshii >gi|3257218|dbj|BAA29901.1| (AP000003) 323aa long hypothetical oligopeptide transport permease protein APPB [Pyrococcus horikoshii] Length = 323 Score = 162 bits (406), Expect = 5e-39 Identities = 105/339 (30%), Positives = 176/339 (50%), Gaps = 23/339 (6%) Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYH 60 M ++K ++I+R + I I V + F+I P +PA+ AG E +T+E I+ I+ + Sbjct: 1 MGSMKVYIIKRSIQLILVIFFVLFLNFIIINAAPGNPAQLMAG-EYSTEEYIKAIEARWG 59 Query: 61 LDEPWYDQYVFLIKGLITNTI------IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILI 114 LD+P + +++ +K L+ + ++P S +M IGK +T I+AF + Sbjct: 60 LDKPIHIRFLIYMKNLLHGDLGYSYRYLEP-VSKLIMERIGKTLLLTVPSIILAF----L 114 Query: 115 IGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFP 174 +G+ L I+A K +D + I L+ S P+FWLG L++ +F VK + IAG+ Sbjct: 115 VGVWLARIAARKPGGKLDVSLSIITLIFYSMPSFWLGLLLILVFGVKLGILPIAGMTN-- 172 Query: 175 EPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQ 234 I A+ +++ L LP TL + + R R + +E + DYV+ Sbjct: 173 --------IRAVYSSSWDKAFDILKHMVLPVTTLMLIQIPAYFRITRGAIIEQSTEDYVK 224 Query: 235 FLKAKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293 A G K I+ ++ +NA++P VT+LGL+ G G + E VFG PGMG + A Sbjct: 225 TFDAVGFSKKHIFNKYIFRNAILPPVTILGLRLGYAFSGAALVEIVFGWPGMGRLLLDAA 284 Query: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 D+P+++ + + A+ I D+LYAV+DPR+RY Sbjct: 285 FARDYPLIMGIYLVIAVSVAVAIFITDLLYAVLDPRIRY 323 >sp|P45054|OPPB_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB >gi|1074011|pir||E64184 oligopeptide transport system permease protein oppB - Haemophilus influenzae (strain Rd KW20) >gi|1574678|gb|AAC22777.1| (U32792) oligopeptide ABC transporter, permease protein (oppB) [Haemophilus influenzae Rd] Length = 306 Score = 162 bits (405), Expect = 7e-39 Identities = 103/331 (31%), Positives = 172/331 (51%), Gaps = 31/331 (9%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA-TKEAIELIKKMYHLDEP 64 KF+ +R+L +PT+ + F + P P + E+A E + I+ YHL+EP Sbjct: 3 KFIFKRLLEALPTLFILITFSFFLMRLAPGSPFTS----ERAYPPEVMANIEAKYHLNEP 58 Query: 65 WYDQYVFLIKGLITNTIIDP-RTSNPVMTD-IGKRFPVTFQLAIIAFFFILIIGIPLGII 122 Y QY ++ L + + + D I FPV+ +L ++AF F +++G+ G + Sbjct: 59 LYKQYFLYLENLSKGDFGPSFKYKDQSVNDLIASAFPVSIKLGMVAFAFAVVLGVTAGTL 118 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +AL +NS D ++ F++LGV P+F +++ IF + G Sbjct: 119 AALNQNSRWDYILMSFSMLGVIMPSFVFAPVLVLIFAIYLGWLPAGG------------- 165 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 G ++ LP +L + AR +R S +E L S++++ KAKG+ Sbjct: 166 ----WNGGTAMY------MILPVASLTIAYVAGIARIMRGSMIEVLHSNFIRTAKAKGLS 215 Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 RI +HAL+ AL+P++T LG F G++ G+ + E+VFGLPGMG V N D+ +V Sbjct: 216 MSRIILKHALRPALLPVITYLGPAFVGIITGSMVIESVFGLPGMGLLFVNGALNRDYSLV 275 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 +++T + + + N IVDILYA+IDP++RY Sbjct: 276 LSLTILVGTLTILFNAIVDILYAIIDPKIRY 306 >dbj|BAB07357.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus halodurans] Length = 322 Score = 161 bits (404), Expect = 9e-39 Identities = 94/330 (28%), Positives = 162/330 (48%), Gaps = 16/330 (4%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKA-WAGGEKATKEAIELIKKMYHLDEP 64 K +IRR IP + +++IVF+IA +P DP + ++E I+ ++ Y L++P Sbjct: 3 KLIIRRCFIMIPQLFLLSVIVFMIAQAMPGDPLTGFYQSNPNISQEVIDAQRERYGLNDP 62 Query: 65 WYDQYVFLIKGLITNTIIDPRTSN-PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 WY QYV + + D PV I R T L+++ +I IPLG++S Sbjct: 63 WYVQYVRWVGNALQGDFGDSYQQRIPVTEVIDNRIWNTIWLSLLTLIMTYMIAIPLGLLS 122 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIF-FVKYRLTTIAGVPPFPEPITHIPM 182 ++ +D + + +G + P F LML++F F T V P +P Sbjct: 123 GRYNDTLLDRAITGYTYVGFAAPVFITSLLMLFLFGFQLGWFPTGGSVSPHAQP------ 176 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 G F + LP F+L + T +++R+ ++ SDYV+ +A+G Sbjct: 177 ------GTFGYVLSKINHMLLPAFSLAIITTVSTVQYLRSELIDQKQSDYVRTARARGAS 230 Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + RIY +H +N+L+PI G + GL+GGT E +F PGMG + +I D+ VV Sbjct: 231 ERRIYLKHLPRNSLLPIAAFFGYELTGLIGGTIFVEMIFSYPGMGQLFLSSIMQRDYSVV 290 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 + ++ + + L+ DI+ +++DPR++ Sbjct: 291 TTMVLLFGVASILGALLSDIILSIVDPRIK 320 >sp|P31132|OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB >gi|7442404|pir||B36263 oligopeptide transport system permease protein oppB - Escherichia coli >gi|1787497|gb|AAC74326.1| (AE000223) oligopeptide transport permease protein [Escherichia coli K12] Length = 306 Score = 160 bits (401), Expect = 2e-38 Identities = 102/330 (30%), Positives = 163/330 (48%), Gaps = 29/330 (8%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 KF++RR L IPT+ + I F + P P + G E + I+ YHL++P Sbjct: 3 KFILRRCLEAIPTLFILITISFFMMRLAPGSP---FTGERTLPPEVMANIEAKYHLNDPI 59 Query: 66 YDQYVFLIKGLITNTIIDPRTSNPVMTD--IGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 QY +K L + + FPV+ +L AFF +I+G+ G+I+ Sbjct: 60 MTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIA 119 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183 ALK+N+ D V A+ GV P+F + L++ IF + G +PM+ Sbjct: 120 ALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHWLPGGGWNGGALKFMILPMV 179 Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243 L + AR R S +E L S++++ +AKG+P Sbjct: 180 -----------------------ALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPM 216 Query: 244 MRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 RI RHALK AL+P+++ +G F G++ G+ + ET++GLPG+G V N D+ +V+ Sbjct: 217 RRIILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL 276 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 ++T + + + N IVD+LYAVIDP++RY Sbjct: 277 SLTILVGALTILFNAIVDVLYAVIDPKIRY 306 >pir||S77118 oligopeptide transport system permease protein appB - Synechocystis sp. (strain PCC 6803) >gi|1652757|dbj|BAA17676.1| (D90908) oligopeptide transport system permease protein [Synechocystis sp.] Length = 326 Score = 159 bits (398), Expect = 5e-38 Identities = 98/327 (29%), Positives = 172/327 (51%), Gaps = 15/327 (4%) Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67 + +R+ + T++G++L++F + P +P A ++E + +++ LD+ Sbjct: 13 ICKRLAIAVITLLGISLVIFSLLALAPGNPLGELATNPSISQEVRDNLRRSLGLDQALPI 72 Query: 68 QYVFLIKGLITNTIIDPRTS-NPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126 +Y+ + L+ + TS +PV+ IG+R P T L A+ L I IPLG+ +AL Sbjct: 73 RYLKWLWSLLQGDLGYSFTSRSPVIDLIGQRLPTTLWLMGTAYLISLAIAIPLGVTAALY 132 Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDAL 186 R W + ++ +L+G S P F G L + IF V+ R PF T L Sbjct: 133 RGRWWEPLISGISLMGFSLPTFLTGLLFILIFSVQLRWL------PFIYDST-------L 179 Query: 187 LRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI 246 + + + +P L F V RFVR++ LE L +Y++ AKG+ + Sbjct: 180 TVDSMASLGTQIRQLLMPVGVLVFYQSAVILRFVRSAALEELPQNYIRTAYAKGLGTWGM 239 Query: 247 YR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVT 305 + H LKNA +P++T++ L + G +TE VF +PG+G+ +++I D PVV+AVT Sbjct: 240 LKNHLLKNASLPLITLIALDVPTIFTGALVTEQVFRVPGIGALLIESIYRSDTPVVMAVT 299 Query: 306 FIYAIIYVTINLIVDILYAVIDPRVRY 332 F+YA++ V + + D++Y ++DPR+R+ Sbjct: 300 FLYAVLIVFFSSLADLIYQLVDPRIRW 326 >pir||H72428 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4980514|gb|AAD35124.1|AE001690_18 (AE001690) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 338 Score = 155 bits (387), Expect = 9e-37 Identities = 107/336 (31%), Positives = 162/336 (47%), Gaps = 20/336 (5%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGG----EKATKEAIELIKKM--- 58 K+L+RR + + T I T IVF++ IP +P G +A EAI ++ Sbjct: 8 KYLLRRFIFLLVTYIVATTIVFILPRAIPGNPLSQILSGLSRVAQANPEAIRAAERTLME 67 Query: 59 -YHLDEPWYDQYVFLIKGLITNTIIDPRTSNP--VMTDIGKRFPVTFQLAIIAFFFILII 115 + L +PWY QY I + + T P V+ I P T L + A I+ Sbjct: 68 EFGLGKPWYVQYFEFITKALRGDLGTSITFYPRKVIDLIIPVIPWTLILLLPATIVAWIL 127 Query: 116 GIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE 175 G LG ++A KRN+WID V +L+ P +WLG + +++F VK + G Sbjct: 128 GNSLGALAAYKRNTWIDKGVLTTSLIVSQIPYYWLGMIFIFLFGVKLGWLPVQGAYSQGT 187 Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235 IP + ++ F L + +P ++ MG A +R + L SDY F Sbjct: 188 ----IPNL------SWSFFVDVLKHYIMPFASIVVSAMGGWAIGMRLMVIYELGSDYAMF 237 Query: 236 LKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQN 295 + G+ RI+++ +N+L+P +T L L GG+LGG ITE VF PG G +A+ Sbjct: 238 SEYLGMKDKRIFKYVFRNSLLPQITGLALSLGGVLGGALITEIVFNYPGTGYLLFRALTT 297 Query: 296 LDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 LD+P++ + I N IVD LYA+IDPR+R Sbjct: 298 LDYPLIQGIFVILIASIYLANFIVDFLYALIDPRIR 333 >gb|AAC64253.1| (AF042861) putative OppB [Treponema denticola] Length = 341 Score = 154 bits (386), Expect = 1e-36 Identities = 95/335 (28%), Positives = 174/335 (51%), Gaps = 27/335 (8%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA---TKEA----IELIKKM 58 +++ +R+++ IP +I +++ +F++ +P DP A EK T E IE ++K Sbjct: 21 RYIFKRLVSIIPVLIIMSVAIFILINLMPGDPILAMLDPEKTKAMTPEERALYIENMRKF 80 Query: 59 YHLDEPWYDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGI 117 D+ ++Y + + + PV IG +F++ I F +I I Sbjct: 81 LGYDKGPVERYFLWMGDTFRGEFGYSIKYNKPVNEFIGTYIKRSFRINIWGFLLAFLISI 140 Query: 118 PLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI 177 P+GI +A+K+NS+ D V + ++G+S P+F+L L++ +F + ++ +G+ +P Sbjct: 141 PVGITAAVKKNSFFDKTVTVLTIVGISLPSFFLALLLIMVFVIFMQILPFSGMS---DPR 197 Query: 178 THIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237 +P ++ LP + + R+VR++ +E L SDY++ + Sbjct: 198 GILPDWHYII---------------LPVTVVVLTSLVGLIRYVRSAMIEILKSDYIRTAR 242 Query: 238 AKGVP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNL 296 AKG+ K+ IYRHA +NAL+P+VT++GL GL GG+ + E +F PGMG A Sbjct: 243 AKGLSEKVVIYRHAFQNALIPVVTLIGLYIPGLFGGSIVVEKIFAYPGMGLLMNYAYGFK 302 Query: 297 DFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 D V+ V + ++ + N+ +D+ Y V+DPR+R Sbjct: 303 DRAVLQTVLLFFGLLTLLGNIFIDVGYMVVDPRIR 337 >gb|AAA62688.1| (M57689) sporulation protein [Bacillus subtilis] Length = 311 Score = 154 bits (385), Expect = 2e-36 Identities = 98/330 (29%), Positives = 161/330 (48%), Gaps = 33/330 (10%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 K++ RR++ I T+ + + F + P P ++G +K E + Y LD+P Sbjct: 3 KYIGRRLVYMIITLFVIVTVTFFLMQAAPGGP---FSGEKKLPPEIEANLNAHYGLDKPL 59 Query: 66 YDQYVFLIKGLITNTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 + QYV +K + P V I FPV+F L A L +G+ G+I Sbjct: 60 FVQYVSYLKS-VAMWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVI 118 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +AL N W D V I + G+S P+F + ++ Y+F +K L +AG + Sbjct: 119 AALYHNKWQDYTVAILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSW--------- 169 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 A +LP L + M AR R+S +E L+SDY++ KAKG+ Sbjct: 170 ----------------AYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLS 213 Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 R+ + ++ +LG +L G+ I ET+FG+PG+G++ V +I N D+ V+ Sbjct: 214 AQRLQCGTPFETHFCRLLHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVI 273 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 + VT +++I + LIVD+LY +IDPR++ Sbjct: 274 MGVTVFFSVILLLCVLIVDVLYGIIDPRIK 303 >gb|AAC69838.1| (AF076683) oligopeptide transporter putative membrane permease domain [Staphylococcus aureus] Length = 311 Score = 153 bits (384), Expect = 2e-36 Identities = 96/330 (29%), Positives = 163/330 (49%), Gaps = 29/330 (8%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA---GGEKATKEAIELIKKMYHLD 62 KF+++RI P +I V+ + FL+ Y +PA G T E I + Y + Sbjct: 3 KFILKRIALMFPLMIVVSFMTFLLTYITNENPAVTILHAQGTPNVTPELIAETNEKYGFN 62 Query: 63 EPWYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121 +P QY +L++ + N T +PV IG F T +L II+ ++I I LG+ Sbjct: 63 DPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIILGV 122 Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181 +SALKR + D +R A + P++W+ +++ VK + +G+ P ++I Sbjct: 123 VSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTG---PESYI- 178 Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241 LP + G+ R VR S +E L+ DYV +L+A GV Sbjct: 179 ---------------------LPVIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGV 217 Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + + H L+NAL V++ + ++GG + E +F PG+G +++AI DFPV+ Sbjct: 218 KSITLMLHVLRNALQVAVSIFCMSIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVI 277 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 A I A++++ N + DI+ A+++PR+R Sbjct: 278 QAYVLIVAVLFIVFNTLADIINALLNPRLR 307 >gb|AAC67218.1| (U78968) transmembrane transport protein DppB [Streptococcus pyogenes] Length = 325 Score = 153 bits (383), Expect = 3e-36 Identities = 106/330 (32%), Positives = 165/330 (49%), Gaps = 21/330 (6%) Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA-TKEAIELIKKMYHLDEPWY 66 +I +I+ + I GV+++ F++ + P DP A + + T + I Y LD+P Sbjct: 8 IIWKIIRCVTLIFGVSVLTFVLLKQSPVDPVMASVNYDTSLTPAQYKAIAHHYGLDKPAL 67 Query: 67 DQYVFLIKGLITNTIIDPRTS----NPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 QY +K +I D TS PV I R +F L +++ +IG LG + Sbjct: 68 VQYFIWLKNVIQG---DLGTSLVYRQPVSDIIRSRAGASFILMGLSWILSGLIGFILGTL 124 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 SA + +D VVR F+ L +S P FW+G + L IF V+ I P I + Sbjct: 125 SAFHQGKLLDRVVRWFSYLQISVPTFWIGLIFLLIFSVQLGWFPIGISSPIGTLSQDITL 184 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 D + +HL LP FTL LG+ R + LSS+YV F +A+G Sbjct: 185 ADRV---------KHLM---LPVFTLSILGIANVTLHTRTKMMSVLSSEYVLFARARGET 232 Query: 243 KMRIYRH-ALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + +I++H L+NA+VP +T+ FG L GG+ + E VF PG+GS +A D P++ Sbjct: 233 QWQIFKHHCLRNAIVPAITLHFSYFGELFGGSVLAEQVFSYPGLGSTLTEAGLKSDTPLL 292 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 +A+ I + NLI DIL ++I+P++R Sbjct: 293 LAIVMIGTLFVFAGNLIADILNSIINPQLR 322 >gb|AAG22035.1|AF305387_2 (AF305387) OppB [Bacillus thuringiensis] Length = 309 Score = 153 bits (383), Expect = 3e-36 Identities = 98/336 (29%), Positives = 164/336 (48%), Gaps = 45/336 (13%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 +++++R + T+ +T + F + +P P K EK + E+I + Y L++P Sbjct: 3 RYVLKRFVYMALTLFLITTLTFFLMKLLPGSPLK---NQEKLSPAQKEIILEKYGLNDPV 59 Query: 66 YDQYVFLIKGLITNTI-IDPRTSNPVMTD-IGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 QY + L + + + N +TD I R + QL + A IG+ LGI++ Sbjct: 60 PVQYARYLGNLAKGDLGVSFQYDNRPVTDMIVDRIGPSAQLGLQAIILGTFIGLILGIVA 119 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183 AL+ N+W+D I ++LG+S P+F L+ Y VK +A Sbjct: 120 ALRNNTWVDYGATIISVLGMSVPSFVFAALLQYFVGVKLGWFPVA--------------- 164 Query: 184 DALLRGNFELFKQHLARFW-------LPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFL 236 FW +P L + ARF R +E + +DY+ Sbjct: 165 -----------------FWKGPEFTVMPTIALSMAVIATIARFSRAELIEVMQADYILTA 207 Query: 237 KAKGVPK-MRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQN 295 KAKG+ + + I +HAL+NAL+P+VT+LG L+ GT + E ++ +PG+G V++I Sbjct: 208 KAKGISQGVIIVKHALRNALIPVVTILGPMVAALITGTLVIEQIYAVPGLGEQFVKSITV 267 Query: 296 LDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 D+ V++ T Y+ I++ + IVDILY +IDPR+R Sbjct: 268 NDYTVIMGTTIFYSAIFILVIFIVDILYGIIDPRIR 303 >emb|CAA92398.1| (Z68203) OppB homologue [Rhizobium sp.] Length = 207 Score = 152 bits (380), Expect = 6e-36 Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 18/219 (8%) Query: 115 IGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFP 174 +G+ G+++A + ++D + F+ +G S P F +GY+++Y F ++ R + G Sbjct: 6 VGVSFGVLAAWRSGGFVDRALATFSAIGYSVPVFVIGYILIYFFAIQTRWLPVQGYTSIN 65 Query: 175 EPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQ 234 + + P L+ LP TL + AR R S LE LS DY++ Sbjct: 66 QGVA--PWFLHLI---------------LPTVTLSVPYIAFIARITRGSMLEVLSEDYMR 108 Query: 235 FLKAKGV-PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293 AKG P ++ HALKNA VPI+TV+G+ F ++GG +TETVF +PG+G V AI Sbjct: 109 TAAAKGASPFAMLFHHALKNAGVPILTVIGISFAYMIGGVVLTETVFNVPGIGRLVVDAI 168 Query: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 +N D+P++ V + + +YV INL+VD+ Y +IDPR+RY Sbjct: 169 KNRDYPIIQTVLVLISGLYVLINLLVDLAYTLIDPRIRY 207 >sp|P50989|OPPB_LACLC OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB >gi|495179|gb|AAB00535.1| (U09553) transmembrane protein [Lactococcus lactis] Length = 319 Score = 151 bits (377), Expect = 1e-35 Identities = 99/328 (30%), Positives = 164/328 (49%), Gaps = 15/328 (4%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 K +IRRIL IP + ++++VF A +P DP G E +E +++ L +PW Sbjct: 3 KVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHE-VEALRRAAGLYDPW 61 Query: 66 YDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124 ++QY+ +L + N + PVMT IG R TF +++++ + IP+ I++A Sbjct: 62 WEQYLRWLGNAIHGNLGMSYNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVAA 121 Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMID 184 W D + + + P + L+++IF Y L FP T P D Sbjct: 122 RNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIF--GYSLNW------FPTGGTVSP--D 171 Query: 185 ALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKM 244 A+ G +F + LP F+L G + R+ L+ + DYV+ +AKGV + Sbjct: 172 AM--GIIPVFFSKIYHMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEK 229 Query: 245 RIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVA 303 I+R H L+NA +PI + G GLLGG ET+FG PG+G + +I D+ ++ A Sbjct: 230 VIFRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITA 289 Query: 304 VTFIYAIIYVTINLIVDILYAVIDPRVR 331 + + + + L+ DI+ A++DPR+R Sbjct: 290 LILLNGFLGLLGALLSDIIMAMVDPRIR 317 >sp|Q07742|OPPB_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPB >gi|1075747|pir||C53290 oligopeptide transport protein oppB - Lactococcus lactis subsp. lactis >gi|308852|gb|AAA16165.1| (L18760) transmembrane protein [Lactococcus lactis] Length = 319 Score = 149 bits (373), Expect = 4e-35 Identities = 99/328 (30%), Positives = 163/328 (49%), Gaps = 15/328 (4%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPW 65 K +IRRIL IP + ++++VF A +P DP G E +E +++ L +PW Sbjct: 3 KVIIRRILLMIPQLFILSILVFFFAKLMPGDPFSGLIGPHTDPHE-VEALRRAAGLYDPW 61 Query: 66 YDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124 ++QY+ +L + N + PVMT IG R TF +++++ + IP+ I++A Sbjct: 62 WEQYLRWLGNAIHGNLGMSYNLKEPVMTVIGHRAINTFWMSLLSVILTYLFAIPMSIVAA 121 Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMID 184 W D + + + P + L+++IF Y L FP T P D Sbjct: 122 RNEGKWQDQLWLTYNSITFGIPPYVFYLLIIFIF--GYSLNW------FPTGGTVSP--D 171 Query: 185 ALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKM 244 A+ G +F + LP F+L G + R+ L+ + DYV+ +AKGV + Sbjct: 172 AM--GIIPVFFSKIYHMILPAFSLAVFGTVGIFTYFRSGILDEQTQDYVRTARAKGVKEK 229 Query: 245 RIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVA 303 I+R H L+NA +PI + G GLLGG ET+FG PG+G + +I D+ ++ A Sbjct: 230 VIFRRHILRNASLPIASNFGFVITGLLGGAIFAETIFGYPGLGQLFITSISGRDYSMITA 289 Query: 304 VTFIYAIIYVTINLIVDILYAVIDPRVR 331 + + + L+ DI+ A++DPR+R Sbjct: 290 LILLNGFSGLLGALLPDIIMAMVDPRIR 317 >gb|AAA62689.1| (M57689) sporulation protein [Bacillus subtilis] Length = 300 Score = 149 bits (372), Expect = 5e-35 Identities = 96/317 (30%), Positives = 156/317 (48%), Gaps = 30/317 (9%) Query: 19 IIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYDQYVFLIKGLIT 78 II + +IV + + + A P ++G +K E + Y LD+P + QYV +K + Sbjct: 2 IITLFVIVTVTFFLMQAAPGGPFSGEKKLPPEIEANLNAHYGLDKPLFVQYVSYLKS-VA 60 Query: 79 NTIIDPR---TSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVV 135 P V I FPV+F L A L +G+ G+I+AL N W D V Sbjct: 61 MWDFGPSFKYKGQSVNDLISSGFPVSFTLGAEAILLALALGVLFGVIAALYHNKWQDYTV 120 Query: 136 RIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFK 195 I + G+S P+F + ++ Y+F +K L +AG + Sbjct: 121 AILTIFGISVPSFIMAAVLQYVFSMKLGLFPVAGWDSW---------------------- 158 Query: 196 QHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRIY-RHALKNA 254 A +LP L + M AR R+S +E L+SDY++ KAKG+ R+ + Sbjct: 159 ---AYTFLPSIALASMPMAFIARLSRSSMIEVLNSDYIRTAKAKGLSAQRLQCGTPFETH 215 Query: 255 LVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVT 314 ++ +LG +L G+ I ET+FG+PG+G++ V +I N D+ V++ VT +++I + Sbjct: 216 FCRLLHILGPMAAQVLTGSFIIETIFGIPGLGAHFVNSITNRDYTVIMGVTVFFSVILLL 275 Query: 315 INLIVDILYAVIDPRVR 331 LIVD+LY +IDPR++ Sbjct: 276 CVLIVDVLYGIIDPRIK 292 >sp|Q47623|SAPB_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB >gi|7449120|pir||H64877 peptide transport system permease protein sapB - Escherichia coli >gi|1279401|emb|CAA65938.1| (X97282) SapB protein [Escherichia coli] >gi|1742115|dbj|BAA14854.1| (D90767) Peptide transport system permease protein SapB. [Escherichia coli] >gi|1742124|dbj|BAA14863.1| (D90768) Peptide transport system permease protein SapB. [Escherichia coli] >gi|1787550|gb|AAC74375.1| (AE000227) homolog of Salmonella peptide transport permease protein [Escherichia coli K12] Length = 321 Score = 147 bits (368), Expect = 1e-34 Identities = 99/330 (30%), Positives = 157/330 (47%), Gaps = 30/330 (9%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F +RRIL I T+ +T + F ++Y P P + + + Sbjct: 4 FTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGAS----------------------LW 41 Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 + +VF GLI + P+ + + FP T +L I+AF F LI+GIP+G+I+ + Sbjct: 42 NAWVFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGI 101 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG---VPPFPEPITHIPM 182 R+ W D ++ ALLG S P FWL L+ + ++G + +PIT + Sbjct: 102 TRHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFAL 161 Query: 183 IDALLRGN---FELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239 IDA L + E+ + LP TL R +R S +E +YV+ + Sbjct: 162 IDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAAATR 221 Query: 240 GVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298 G+ + I RH L NAL P++ LGLQF +L ITE VF PG+G + + AI+ D+ Sbjct: 222 GLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDY 281 Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVIDP 328 + A + + + +N+I DIL A+ +P Sbjct: 282 AAISAGVMVCGSLVIIVNVISDILGAMANP 311 >pir||S76320 hypothetical protein - Synechocystis sp. (strain PCC 6803) >gi|1001545|dbj|BAA10172.1| (D64000) oligopeptide transport system permease protein [Synechocystis sp.] Length = 337 Score = 146 bits (364), Expect = 4e-34 Identities = 96/335 (28%), Positives = 162/335 (47%), Gaps = 27/335 (8%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 ++++R++ + T++ +L+ F I P K + E ++ +K + LD+PWY Sbjct: 15 YVVQRLIEGLITLLLASLLSFAIVQLAPGSYLDTLQQNPKISPETLQQLKVQFGLDQPWY 74 Query: 67 DQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124 QY + ++T + V + + +R P T LAI + I IPLGI+ A Sbjct: 75 VQYWRWLTQVVTRFNFGESFVYNRSVASLLIERIPATLLLAITSIILTWAIAIPLGIVGA 134 Query: 125 LKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMID 184 +++N++ID +R+ + +G P+F L+L++ V P P+ + ID Sbjct: 135 VQQNTFIDRSLRVISYIGQGFPSFITALLLLFL---------AQSVSPLL-PVGDMTSID 184 Query: 185 ALLRGNFELFKQHLARFW-------LPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237 E H + W LP L R +R L+ L DY+Q + Sbjct: 185 FA-----EFSWPH--KVWDVAWHMILPTLALSITSFAGLQRLMRGQLLDVLRQDYIQTAR 237 Query: 238 AKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNL 296 AKG+P+ R IY HAL+NA+ P++T+LG +F LL G I E F PG+G +QA+ Sbjct: 238 AKGLPENRVIYVHALRNAINPLITILGFEFASLLSGAFIAEFFFNWPGLGRLILQAVTAQ 297 Query: 297 DFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 D +V+ + A + + NL+ D+L DPR++ Sbjct: 298 DLYLVMGSLMMGATLLIVGNLLADLLLKFTDPRIQ 332 >pir||D75573 peptide ABC transporter, permease protein - Deinococcus radiodurans (strain R1) >gi|6460715|gb|AAF12420.1|AE001863_45 (AE001863) peptide ABC transporter, permease protein [Deinococcus radiodurans] Length = 328 Score = 144 bits (360), Expect = 1e-33 Identities = 97/333 (29%), Positives = 166/333 (49%), Gaps = 13/333 (3%) Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLD 62 ++ + +RRIL IPT++ ++++ FL+ P + + +KE + I + LD Sbjct: 5 HMLNYTLRRILGMIPTLLVISVLCFLVIKLQPGSFIDQYLEDPRFSKETVANITRQLGLD 64 Query: 63 EPWYDQYVFLIKGLITNTIIDPRTSN--PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 +P + QY+ I G++T ++ PV + IG+R T +A + +I +PLG Sbjct: 65 QPAWKQYLNWITGVVTRLDFGYSFASGAPVTSIIGERLGWTVFIAALTLALTWLIAVPLG 124 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 I +A R + +G++ P F L L+L + + T + G + Sbjct: 125 IYTAFNRYGIPAQIANFLGYVGLAIPDF-LAALLLVVLVRQLGGTNVGG-------LFRP 176 Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 MIDA +F LA W+P +G G+ R +R S L+ LS DY++ KAKG Sbjct: 177 DMIDA--PWSFAKVLDLLAHLWIPVLAVGLEGVAGLMRQMRASTLDVLSQDYIRTAKAKG 234 Query: 241 VPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299 +P+ R I++HA++NA+ P++++ GL L+ GT I V LP +G ++ N D Sbjct: 235 LPQGRVIWKHAVRNAINPLISLAGLSLPTLISGTIIISIVMSLPTIGPLLYDSLLNKDQY 294 Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + + + A + + NL+ D+ A DPRVRY Sbjct: 295 TAMTLLMLSAFLLLIGNLLSDLALAWADPRVRY 327 >pir||B82356 peptide ABC transporter, permease protein VC0172 [imported] - Vibrio cholerae (group O1 strain N16961) >gi|9654575|gb|AAF93348.1| (AE004107) peptide ABC transporter, permease protein [Vibrio cholerae] Length = 342 Score = 144 bits (360), Expect = 1e-33 Identities = 95/329 (28%), Positives = 166/329 (49%), Gaps = 19/329 (5%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 FL++R+ + + ++L+ F I + DP + G + E + ++ L++P+ Sbjct: 21 FLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAER-QALRDELGLNDPFI 78 Query: 67 DQYVFLIKGLITNTIIDPRTS----NPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 +Y + + D TS P + I + T +L A I++ IPLG+ Sbjct: 79 IKYSRFVTAAVQG---DLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 135 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 SA+ S +V + +G+S P F +++Y+F ++ + P + T Sbjct: 136 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIE-----LGWXPSYGRGET---- 186 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 ++ L + L LP L + + + R VR+ LE LSS+Y++F +AKG+P Sbjct: 187 VNLLGWESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLP 246 Query: 243 KMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 +IY +HALKN ++P++TV G+Q G ++ T +TETVF PG G ++AI +D P++ Sbjct: 247 LNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLI 306 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRV 330 A +I+V N IVD+LY +I+P V Sbjct: 307 TAYVIFVGLIFVVTNTIVDLLYGLINPTV 335 >dbj|BAB05794.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus halodurans] Length = 310 Score = 143 bits (357), Expect = 3e-33 Identities = 94/329 (28%), Positives = 163/329 (48%), Gaps = 29/329 (8%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA---GGEKATKEAIELIKKMYHLDE 63 ++++R+ + IP + ++ + F+ P DPA+ G T E I K+ LD+ Sbjct: 4 YVMKRLFSVIPLLFIISFLTFVFINLSPLDPAEVVLQAQGVPTITDELIAQTKQELGLDQ 63 Query: 64 PWYDQYV-FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 P+ QY +L+ L + T PV IG F T +L +++ I+++ I LG+I Sbjct: 64 PFLIQYFHWLLACLQLDFGHSYVTKEPVSAIIGPAFFNTLKLTLVSSIVIIVLSILLGVI 123 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 A+K ID +R F+ L + P++ L M++ F VK L +G+ + I + + Sbjct: 124 CAMKGGKAIDKSIRGFSFLLMGIPSYLLASFMIWYFSVKLDLLPTSGLDSYQSYILPVTV 183 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 I A +G+ R VRNS L L+ D+V + +A G+ Sbjct: 184 ITASY-------------------------VGIYFRSVRNSMLSHLNEDFVLYGRACGIS 218 Query: 243 KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 + ++ H L+N+L +++ + +LGGT + E VF PG+GS +V++I N DFP++ Sbjct: 219 EKKVTIHILRNSLQVAISIFCMGIPTILGGTVVVENVFAWPGLGSLSVKSILNRDFPIIQ 278 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331 A I A+ +V N DI+ A ++P+ R Sbjct: 279 AYVLILAVSFVFFNTFSDIINAAMNPKQR 307 >gi|10954708 hypothetical ABC-transporter gene~similar to agaB gene [Agrobacterium rhizogenes] >gi|8918708|dbj|BAA97773.1| (AB039932) hypothetical ABC-transporter gene~similar to agaB gene [Agrobacterium rhizogenes] >gi|10567372|dbj|BAB16181.1| (AP002086) hypothetical ABC-transporter gene~similar to agaB gene [Agrobacterium rhizogenes] Length = 319 Score = 142 bits (354), Expect = 7e-33 Identities = 96/345 (27%), Positives = 155/345 (44%), Gaps = 47/345 (13%) Query: 9 IRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYDQ 68 +RR+L I+ V I+F + +P DPA+ GG A + + K LD Q Sbjct: 1 MRRLLQGGLIILLVIFIIFTLLRVVPGDPARLIVGG-MAPDAVVAMKAKELGLDRAIPLQ 59 Query: 69 YVFLIKGLITNTI----IDPRT---------SNPVMTDIGK-------RFPVTFQLAIIA 108 +V + L T + + P++ ++P + K P+T QLA +A Sbjct: 60 FVSYLGHLATGDLGTSFVRPKSGASLAGSAYNDPTREERAKVLDLILGTLPMTLQLAAVA 119 Query: 109 FFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIA 168 L++ +PLG+ L + W D + + VSTP FWLG ++ VK R+ Sbjct: 120 LVIALLVAVPLGLAGGLYQGRWPDKLALALGSIFVSTPNFWLGIVLTLFLSVKLRVLPAI 179 Query: 169 GVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEAL 228 G F I LP L R + S + L Sbjct: 180 GYNGFEYTI-------------------------LPAIVLAVEIAPFILRTLTVSVAQVL 214 Query: 229 SSDYVQFLKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGS 287 D++Q +G+ + R I+ H L N+ VP++ +LG+Q G LLGG + E +F PG+G Sbjct: 215 REDFIQLAAVRGLSRGRTIFSHVLGNSAVPLINLLGVQLGMLLGGVLVVEFIFDYPGLGL 274 Query: 288 YAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + A+Q DFP++ V ++++V IN++VD++ IDPR+ Y Sbjct: 275 LTINAVQQRDFPLIQGVAIFISVMFVVINILVDLIAMTIDPRLEY 319 >dbj|BAA97044.1| (AB015765) SapB [Vibrio alginolyticus] Length = 320 Score = 141 bits (352), Expect = 1e-32 Identities = 74/254 (29%), Positives = 136/254 (53%), Gaps = 7/254 (2%) Query: 85 RTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVS 144 + N + ++ FP T +L AF L+IGIPLG ++ +K+ W+DT + ++ G S Sbjct: 60 KNGNAIYDELAVVFPATLELCFFAFLVSLLIGIPLGTVAGMKQGKWLDTSISFMSMSGYS 119 Query: 145 TPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI---PMIDALL-RGNF--ELFKQHL 198 P FW+ L++ +F ++Y+L +AG I H+ +IDA + +G + + + Sbjct: 120 APIFWVALLLIMVFSLEYQLFPVAGRYDLLYEIDHVTGFAIIDAFMAKGEYRAHALQSVI 179 Query: 199 ARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRIY-RHALKNALVP 257 LP L +R+S E +S +Y++ + KG+ I +H L+NA+ P Sbjct: 180 EHMVLPCLVLALAPTTQVVGLMRSSVAEVMSQNYIRAARIKGLSNREIVTQHVLRNAIPP 239 Query: 258 IVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINL 317 I+ +G+Q ++ ITE++F PG+G + + A+ N D+ + A + A + +T N+ Sbjct: 240 IIPKVGVQLSSMITLAIITESIFNWPGIGRWLLDALANQDYASIQAGVMVLATLVLTANI 299 Query: 318 IVDILYAVIDPRVR 331 + D++ A+I+P VR Sbjct: 300 LSDLIGAMINPLVR 313 >sp|P36668|SAPB_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPB >gi|628818|pir||S39586 peptide transport system permease protein sapB - Salmonella typhimurium >gi|414209|emb|CAA52285.1| (X74212) sapB [Salmonella typhimurium] Length = 321 Score = 139 bits (347), Expect = 4e-32 Identities = 93/330 (28%), Positives = 153/330 (46%), Gaps = 30/330 (9%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F +RR+L + T+ +T I F ++Y P P + + + Sbjct: 4 FTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGAS----------------------LW 41 Query: 67 DQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISAL 125 + +VF GL+ + + + + FP T +L I+AF F L++GIP+G ++ + Sbjct: 42 NAWVFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGTVAGV 101 Query: 126 KRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPF---PEPITHIPM 182 R+ W D + ALLG S P FWL L+ F + ++G +P+T + Sbjct: 102 TRSKWPDRFISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFAI 161 Query: 183 IDALLRG---NFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239 IDA + E+ + LP TL R +R S +E +YV+ + Sbjct: 162 IDAWISDCPWRDEMVMSAIRHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVKAAATR 221 Query: 240 GVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298 G+ + I R H L NAL P++ LGLQF +L ITE VF PG+G + + AI+ D+ Sbjct: 222 GLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAIRQQDY 281 Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVIDP 328 + A + + + +N+I DIL A+ +P Sbjct: 282 AAISAGVMVIGSLVIVVNVISDILGAMANP 311 >pir||A75142 oligopeptide transport system permease protein appb PAB0628 - Pyrococcus abyssi (strain Orsay) >gi|5458361|emb|CAB49850.1| (AJ248285) OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPB [Pyrococcus abyssi] Length = 334 Score = 138 bits (345), Expect = 7e-32 Identities = 97/338 (28%), Positives = 166/338 (48%), Gaps = 20/338 (5%) Query: 1 MANLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKA----WAGGEKATKEAIELIK 56 M+ +K++L+R+ + +I T I F+I +P DP +A +ATK Sbjct: 2 MSGIKRYLLRKTMIYILTFFFAVTIDFIIPRIMPGDPIAVLLSRFATLPEATKYLHSYFV 61 Query: 57 KMYHLDEPWYDQYVFLIKGLITNT--IIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILI 114 + + LD+P ++QY+ K ++ I PV + + P L A Sbjct: 62 QAFGLDKPLWEQYISFWKAVLHGDLGISIYYYPKPVAEILKEALPYDLALLFPALVASWF 121 Query: 115 IGIPLGIISALKRNSWIDT-VVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPF 173 +G LG ++ +N +D ++ IF L S P FW L+ Y+F K I+G + Sbjct: 122 VGNWLGALAG--KNKKLDNYLMPIFYFLQAS-PYFWFAILLSYLFTFKLGWFPISGAYSY 178 Query: 174 PEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYV 233 IP + ++E K +L + LP +L + +G A +RN + + +DY+ Sbjct: 179 GI----IPSL------SWEFIKDYLHHWTLPFLSLFMVQLGGWAIGMRNMIIYEIEADYI 228 Query: 234 QFLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAI 293 ++L++ GV + + +HA KNA++P VT L LQ G L+ G + VF PG+G +Q I Sbjct: 229 RYLESLGVSEKILMKHAFKNAMLPQVTGLALQLGLLVAGNVTVQVVFSYPGIGYVLMQGI 288 Query: 294 QNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 N D+ ++ + + + N ++D+LYA+IDPRVR Sbjct: 289 MNQDYFLIQGAFLVIILTVLVANFVIDLLYAIIDPRVR 326 >pir||A71212 probable oligopeptide transport system permease protein appB - Pyrococcus horikoshii >gi|3258405|dbj|BAA31088.1| (AP000007) 349aa long hypothetical oligopeptide transport system permease protein appB [Pyrococcus horikoshii] Length = 349 Score = 132 bits (329), Expect = 6e-30 Identities = 107/354 (30%), Positives = 159/354 (44%), Gaps = 40/354 (11%) Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIP-------------------ADPAKAWAGG 44 L K+L+ RI+ + + VTL+V + K+ A +A A Sbjct: 3 LGKYLVIRIINALIVLSIVTLVVSALFVKVAEKDLENRIQELINSEYQSLAQRGRAPANP 62 Query: 45 EKATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPR-----TSNPVMTDIGKRFP 99 ++ E I + + LD P++ + ++ K I + R T V I P Sbjct: 63 DEWRAERIAYYRHQFKLDRPYWWRVLYYSKRTIMLDFGNTRIPIFGTERNVKNIISLALP 122 Query: 100 VTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFF 159 T L A ++IIG+ LG+ +A S D + I AL+ S P +W G + L IF Sbjct: 123 RTILLFTTAQIIVIIIGLLLGVKAAQMVGSAFDRSLSILALVTTSIPMWWFGMMSLLIFA 182 Query: 160 VKYRLTTIAGVP-PFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTAR 218 K +P P + H+ + R LP FT+ F+ G A Sbjct: 183 FKLGWFPANSMPDPNLTGLAHVLDV--------------AKRLVLPIFTIVFVLFGGWAW 228 Query: 219 FVRNSFLEALSSDYVQFLKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITE 277 RN + + D++ +AKGVP+ + IY HAL+ A PIVT+ G LGG ITE Sbjct: 229 VTRNIMITTMQEDFIMAARAKGVPERKVIYGHALRAAAPPIVTMTIFSLLGSLGGAIITE 288 Query: 278 TVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 +VF PGMG AIQ + +V+ +TFI +Y+T +I DI Y +DPRVR Sbjct: 289 SVFNWPGMGRVYWIAIQTNEINLVMGLTFISVALYLTGVIIADISYGFLDPRVR 342 >pir||C82170 peptide ABC transporter, permease protein VC1681 [imported] - Vibrio cholerae (group O1 strain N16961) >gi|9656197|gb|AAF94831.1| (AE004246) peptide ABC transporter, permease protein [Vibrio cholerae] Length = 320 Score = 132 bits (328), Expect = 7e-30 Identities = 85/335 (25%), Positives = 160/335 (47%), Gaps = 35/335 (10%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 + +R+ FI T++ +T++ + +A DP W + + W Sbjct: 4 YTVRKFNLFIITLLILTMVGYSLAR---FDPHSPWT---------------LIGFWQGWS 45 Query: 67 DQYVFLIK---GLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 V L++ GL N + P++ ++ FP T +L IAF L++GIP+G ++ Sbjct: 46 SYLVQLMEFNFGLNKNGV-------PILHELLVVFPATIELCTIAFILSLLVGIPIGTLA 98 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI--- 180 +++ W+DT++ ++ G S P FWL +M+ F + + + +AG I H+ Sbjct: 99 GMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGF 158 Query: 181 PMIDALLRGN---FELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237 +IDA L + + + + LP L +R S E ++ +Y++ K Sbjct: 159 ALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAK 218 Query: 238 AKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNL 296 KG+ +I +H L+NA+ P++ G+Q +L ITE++F PG+G + + A+ N Sbjct: 219 IKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANR 278 Query: 297 DFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 DF + A + + +T N++ D++ A +P VR Sbjct: 279 DFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313 >pir||T35939 probable transport permease protein - Streptomyces coelicolor >gi|4158198|emb|CAA22761.1| (AL035206) putative transport permease protein [Streptomyces coelicolor A3(2)] Length = 334 Score = 131 bits (326), Expect = 1e-29 Identities = 89/326 (27%), Positives = 165/326 (50%), Gaps = 18/326 (5%) Query: 10 RRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEK--ATKEAIELIKKMYHLDEPWYD 67 RR L +P ++ VT F IA P DP +A+AG A +E ++ +++ +DE + Sbjct: 19 RRALFAVPVVLVVTFGAFAIAAASPFDPVRAYAGTAALGADQETLDRLRENLGVDESFVA 78 Query: 68 QYVFLIKGLITNTIIDPRT-SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALK 126 ++ + +T + PV IG+R + L +AF + +G+ LG+++A + Sbjct: 79 RWWHWLTSALTGDLGHSSVLRQPVTQVIGERLVWSALLCAVAFAVAVGLGLLLGVLAARR 138 Query: 127 RNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDAL 186 S +D V + + P FW+ L +++F +++ + G+ + Sbjct: 139 PGSVLDRAVTSLSYTLEAAPVFWIALLAVWLFALQWDVLPAGGLTDTASQ----QVTPGQ 194 Query: 187 LRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI 246 + G+ L LA LP FTL +VR +AL+ D V+ +A+G+ + + Sbjct: 195 VAGHIVLPAGVLAVSQLPWFTL----------YVRQGVGDALAEDPVRGARARGLAEGTV 244 Query: 247 Y-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVT 305 HAL++ L+P++T++G + L+ G + ETVF PG+ + V+A +DFP++ A+T Sbjct: 245 LVGHALRSGLLPVLTLIGSRVPELITGALLVETVFSWPGIAAATVEAATAVDFPLLAALT 304 Query: 306 FIYAIIYVTINLIVDILYAVIDPRVR 331 + + + NL+ D+LY + DPRV+ Sbjct: 305 VLATVAVLAGNLLADLLYGLFDPRVK 330 >pir||A75027 oligopeptide transport permease protein appb PAB1194 - Pyrococcus abyssi (strain Orsay) >gi|5459169|emb|CAB50655.1| (AJ248288) OLIGOPEPTIDE TRANSPORT PERMEASE PROTEIN APPB [Pyrococcus abyssi] Length = 353 Score = 129 bits (321), Expect = 5e-29 Identities = 85/292 (29%), Positives = 136/292 (46%), Gaps = 17/292 (5%) Query: 45 EKATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRT----SNPVMTDIGKRFPV 100 E+ K + + K Y LD P++ + + K + D R+ V I P Sbjct: 67 EEWKKREYDRLLKAYGLDRPFWVRVIDRTKKTMMLDFGDVRSPIFGETSVRKIIAVAIPR 126 Query: 101 TFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFV 160 T L A ++ +GI LG+ +A K D + +FA++ S P +W G +++ +F Sbjct: 127 TVMLFTTASLIVMFLGIMLGLKAAQKAGGLFDRGLSVFAMVTTSIPMWWFGMILILLFSF 186 Query: 161 KYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFV 220 K L G+ P + F + L LP T+ F+ G A Sbjct: 187 KLNLLPSGGMTSIPP------------KTGFAYYTDVLKHMILPLTTIVFVSFGGWAWVT 234 Query: 221 RNSFLEALSSDYVQFLKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETV 279 RN + L D++ +AKGVP+ + IY HAL+ A PI+T+ G LGG +TE+V Sbjct: 235 RNIMIGVLQEDFIMAARAKGVPENKVIYGHALRAAAPPIITMTIFTLLGSLGGAILTESV 294 Query: 280 FGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 F PGMG AIQ ++ +++ T+I +Y+ L+ D+ Y +DPRV+ Sbjct: 295 FNWPGMGRLYWVAIQQMELNLIMGSTYISVALYLIGVLLADLAYGFLDPRVK 346 >sp|Q10611|YC83_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1283C >gi|7442425|pir||G70771 probable peptidetransport system permease - Mycobacterium tuberculosis (strain H37RV) >gi|1322407|emb|CAA97749.1| (Z73419) oppB [Mycobacterium tuberculosis] Length = 325 Score = 128 bits (319), Expect = 8e-29 Identities = 81/329 (24%), Positives = 150/329 (44%), Gaps = 7/329 (2%) Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDE 63 + ++L RR+L ++ + + + + + + + + I+ LD Sbjct: 1 MTRYLARRLLNYLVLLALASFLTYCLTSLAFSPLESLMQRSPRPPQAVIDAKAHDLGLDR 60 Query: 64 PWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 P +Y + + T PV T++G+R V+ +L ++ F + G+ +G Sbjct: 61 PILARYANWVSHAVRGDFGTTITGQPVGTELGRRIGVSLRLLVVGSVFGTVAGVVIGAWG 120 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183 A+++ D V+ ALL +STP F + L++ R+ G+ F P + Sbjct: 121 AIRQYRLSDRVMTTLALLVLSTPTFVVANLLI---LGALRVNWAVGIQLFDYTGETSPGV 177 Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243 G ++ L LP TL +R+ RN+ L+ L D+++ +AKG+ + Sbjct: 178 AG---GVWDRLGDRLQHLILPSLTLALAAAAGFSRYQRNAMLDVLGQDFIRTARAKGLTR 234 Query: 244 MR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 R + +H L+ AL+P+ T+ GL+ G E +FG GMG + V+ I D +V Sbjct: 235 RRALLKHGLRTALIPMATLFAYGVAGLVTGAVFVEKIFGWHGMGEWMVRGISTQDTNIVA 294 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331 A+T + + L+ D++YA +DPRVR Sbjct: 295 AITVFSGAVVLLAGLLSDVIYAALDPRVR 323 >gb|AAC69843.1| (AF076684) oligopeptide transporter putative membrane permease domain [Staphylococcus aureus] Length = 328 Score = 128 bits (319), Expect = 8e-29 Identities = 88/330 (26%), Positives = 159/330 (47%), Gaps = 33/330 (10%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA--TKEAIELIKKMYHLDE 63 K ++ R++ I + ++ + F++ P +P + A + E I K L++ Sbjct: 5 KSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLND 64 Query: 64 PWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRF-PVTFQLAIIAFFFILIIGIPLGII 122 Q+ + L+ + S +T I + P+T ++ L I IPLGII Sbjct: 65 SLLVQWWHWMNHLLHFNLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGII 124 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 +A + + W D V+R+ + L +S PAF++G ++L+I +T++ Sbjct: 125 AAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFI-------------------VTNLMN 165 Query: 183 IDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 ID+++ L++F LP TL R VR++ L L S+ VQ + +G+ Sbjct: 166 IDSVI----------LSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMN 215 Query: 243 KMRIYRH-ALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + I H LK ++PI+ +LG+ G L+GGT + E +F +PG+G + +I++ D+PV+ Sbjct: 216 ERYILIHDLLKPTILPIIPLLGISLGSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVI 275 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 V IN I D+L ++DP+ R Sbjct: 276 QGCVLFIGFFVVIINTIADLLTLLLDPKQR 305 >gb|AAK41521.1| Oligo/dipeptide transport, permease protein (dppB-2) [Sulfolobus solfataricus] Length = 333 Score = 127 bits (317), Expect = 1e-28 Identities = 80/337 (23%), Positives = 168/337 (49%), Gaps = 28/337 (8%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIP----ADPAKAWAGGEKATKEA------IELIK 56 + I+R + I ++G+ ++++ + +P +PA +A + K A I I Sbjct: 11 YAIKRAVDRIILLLGLVILLWFVVEALPELFGVNPAIWYAPVGQLGKSASYFQNIINDIT 70 Query: 57 KMYHLDEPWYDQYVFLIKGLIT-NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILII 115 +Y ++P Y Q++ + L + N D + V+ ++ + P T L + F F ++ Sbjct: 71 TLYGFNQPLYVQFIRYLYALFSFNLGYDFQHHEYVINEVLQYLPYTIILTLPPFIFQTLL 130 Query: 116 GIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE 175 I +G +ALKRN +D ++ + +L + P F++ ++ +F V + I+G+ Sbjct: 131 AIVVGAYAALKRNKAVDHIISNYMILQYNIPGFFILAVLWVVFAVYIKAIPISGIQ---- 186 Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFL-GMGVTARFVRNSFLEALSSDYVQ 234 + H+ I ++L+ +WLP F+ G V +RN+ ++ L SD+V+ Sbjct: 187 -VLHLNDIVSILKV-----------YWLPWIIQVFIFGFPVRGILMRNTMVDVLDSDFVK 234 Query: 235 FLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294 + + G+ + + A +N+++P++T G+ +LGG E +FG+PGMG + A Sbjct: 235 YARLSGLKESTVRAIARRNSIIPVITRTGIDLAFILGGIYFIEYIFGIPGMGYLGIIAAT 294 Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 L+ P++ F + + + +D++Y ++DPR++ Sbjct: 295 ELNIPLLTGSFFFLTLYALVVLYAMDLIYPLVDPRIK 331 >pir||E72300 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4981607|gb|AAD36141.1|AE001766_7 (AE001766) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 327 Score = 127 bits (315), Expect = 2e-28 Identities = 91/335 (27%), Positives = 159/335 (47%), Gaps = 21/335 (6%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPAD-----PAKAWAGGEKATKEAIELIKKMYHL 61 +++RR++T T+ +++I F+I P D A+ GE IE +KK Y L Sbjct: 4 YILRRLITAFITLWIISIISFVIIQLPPGDFLTSYIAQLKVSGEDVDIATIEALKKQYGL 63 Query: 62 DEPWYDQYVFLIKGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 D+P Y QY+ + G++ PV + R VT +A ++ F I G +G Sbjct: 64 DKPIYVQYLKWLWGILHGDFGYSFSWKKPVNELLWNRLGVTVLVATLSLIFSWIFGFIIG 123 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFF--VKYRLTTIAGVPPFPEPIT 178 + SA+ S D + I +G++ P F L ++++ + L+ + V P+T Sbjct: 124 MYSAVHPYSIGDYLATILGYIGLAVPNFLLALILMWGIYSLTGINLSGLHSVKYLNTPMT 183 Query: 179 HIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKA 238 +D L HL W+P LG GM R +R + L+ L YV+ + Sbjct: 184 IDKFLDIL---------NHL---WIPVLVLGTSGMAGLIRTLRANLLDELHKPYVEAALS 231 Query: 239 KGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297 KG+P+ +++ ++ L+ A++P ++ +G + G IT V LP +G + A++N D Sbjct: 232 KGLPENKVFWKYPLRIAMIPFISTVGWSLPWIFSGATITAIVLNLPSVGPLLLNALKNQD 291 Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + ++ + V LI DIL A +DPR+R+ Sbjct: 292 MYLAGSLVMFLSFFTVIGTLISDILLAWVDPRIRF 326 >emb|CAC12449.1| (AL445067) dipeptide transport system, permease protein (dppB) related protein [Thermoplasma acidophilum] Length = 340 Score = 126 bits (313), Expect = 4e-28 Identities = 89/335 (26%), Positives = 152/335 (44%), Gaps = 19/335 (5%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAW------AGGEKATKEAIELIKKMY 59 K++I++I F IG + FL+ +P +PA AGG + ++ Y Sbjct: 12 KYIIKKISLFFGIFIGAITVNFLLPRMMPGNPAVVVYNEILKAGGSGVNPAYLHQLEVEY 71 Query: 60 HLDE-PWYDQYVFLIKGLITNTI--IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIG 116 + P YDQY + L + PV + + P T L I + +G Sbjct: 72 GISNAPIYDQYFQYLWNLFHGNLGLSIAFYPEPVSAILAEALPWTLFLVISSITISFFLG 131 Query: 117 IPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEP 176 LG + + RN+ D + +FA+ S PAF L +++L IF V + + G Sbjct: 132 NRLGRYAGINRNTSKDLAIDVFAMFMASFPAFVLAFIVLDIFSVYGHIFPLGGAYG---- 187 Query: 177 ITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFL 236 ++ + N + LP T+ +G +RN+ + L+SD++ + Sbjct: 188 ------VNVNMGFNVPFIISVIYHAVLPVLTIILTSLGGWVLGMRNNIIPNLNSDFINYS 241 Query: 237 KAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNL 296 + G +I A KNAL+P +T + G + G I E++F PG+G Y + AI +L Sbjct: 242 ENLGFKDYQIKSIAYKNALLPNLTGFAMSIGLSVSGVIIEESIFSYPGVGLYMITAINSL 301 Query: 297 DFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 D+P++ + + I + NL+VD+LY +DPR+R Sbjct: 302 DYPLMQGIFLMVVIAVLAGNLVVDLLYGFLDPRIR 336 >gb|AAG09258.1| (AF176664) EppB [EDTA-degrading bacterium BNC1] Length = 315 Score = 124 bits (308), Expect = 2e-27 Identities = 82/293 (27%), Positives = 138/293 (46%), Gaps = 25/293 (8%) Query: 50 EAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAF 109 E + + LD+P D+Y + GL + + ++ KR V+ +L + Sbjct: 36 EVLHAMAVKLRLDQPLLDRYWMWLSGLFVGDFGPSIHNIDIGAELVKRLGVSLRLLALGI 95 Query: 110 FFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYI---------FFV 160 ++ + +I A+ + SW D ++ A+ +S P FWL + + F + Sbjct: 96 VLAFLMAVAASVIGAVLQFSWADHIISFVAVAMISMPVFWLALQLKRLAISINQELGFRL 155 Query: 161 KYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFV 220 Y AG+ P + ++ +L LP L G +R+ Sbjct: 156 LYTSGDGAGMTA-STPWDRVLLLIGVLA--------------LPTIALSMQACGKWSRYG 200 Query: 221 RNSFLEALSSDYVQFLKAKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETV 279 R + ++AL+S+YV+ +AKG+ + R+ H L+ +L P++TV+ +LG + +TETV Sbjct: 201 RVALIDALNSEYVKLARAKGLSETRVVLAHGLRTSLAPMLTVVAAGGAVILGESVVTETV 260 Query: 280 FGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 F GMG V IQN D VV+ + +I + NLI DILYAV+DPR+RY Sbjct: 261 FQWRGMGDLLVTGIQNNDVYVVLGWLLVAGLIIMVFNLIADILYAVLDPRIRY 313 >pir||A72537 probable oligopeptide transport permease protein APE1582 - Aeropyrum pernix (strain K1) >gi|5105269|dbj|BAA80582.1| (AP000062) 363aa long hypothetical oligopeptide transport permease protein [Aeropyrum pernix] Length = 363 Score = 124 bits (308), Expect = 2e-27 Identities = 81/236 (34%), Positives = 120/236 (50%), Gaps = 16/236 (6%) Query: 104 LAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYR 163 L + A IGI LG A K S D + +F ++ S P +W+ +M+ IF R Sbjct: 132 LFLTATLITFAIGIILGFQMARKPGSIFDRGLSVFGMISWSFPTWWVAIIMILIFSFYLR 191 Query: 164 LTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHL--ARFWL-----PGFTLGFLGMGVT 216 L FP ++ + L + LF++ + A+ WL P T+ + G Sbjct: 192 L--------FPAQAQYVYFELSKLPPDLPLFEKIVEQAKIWLKYMTMPVMTIVLVSFGGA 243 Query: 217 ARFVRNSFLEALSSDYVQFLKAKGVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPI 275 + +RN L L D+V +A+G+P+ R IY H L+ + PIVT L L G GG I Sbjct: 244 SYLIRNIVLGILQEDFVTAARARGLPERRVIYGHVLRTSSPPIVTYLALSIVGAFGGAII 303 Query: 276 TETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 TE VFG PGMG AIQ D V+VA T++ + ++ LI+D +Y+++DPRVR Sbjct: 304 TEAVFGWPGMGLVYWIAIQQSDAKVLVASTWVLTVFFILTILILDFIYSLLDPRVR 359 >gi|10955049 ophB [Agrobacterium tumefaciens] >gi|7442423|pir||S77573 oligopeptide transport protein homolog ophB - Agrobacterium tumefaciens plasmid pTiR10 >gi|1215732|gb|AAC44509.1| (AF242881) ophB [Agrobacterium tumefaciens] Length = 334 Score = 123 bits (307), Expect = 2e-27 Identities = 88/329 (26%), Positives = 156/329 (46%), Gaps = 26/329 (7%) Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67 L++R+ + ++ ++ ++F+ + +P D A A G AT A+ +++ L+EP Sbjct: 24 LLKRVAAGLGLLLVLSSLIFIGSTLLPGDAATAILG-RSATPAALAELRERLGLNEPLIV 82 Query: 68 QYVF----LIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 +Y+ + G + +++I+ R+ V IG R T LA + + + LG++S Sbjct: 83 RYMSWLNAFVHGDLGSSLINGRS---VADSIGARLGNTLFLAASVALVAVPLAVFLGVLS 139 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183 R +D + + V+ P F++GYL++YI V F T + Sbjct: 140 VRYRGRVLDRTIALVTRTFVALPEFFIGYLLIYILSVSLGW--------FASSSTVFARM 191 Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243 F + LP TL F+ G VR S L+ + +++ KGV Sbjct: 192 G---------FADRVVAIALPCLTLVFVVTGHITTMVRASVLDVMERPFIEMAALKGVSH 242 Query: 244 MRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 + +RHAL NAL PI+ V+ + L+ G + E +F PG+G Y V ++ N PVV Sbjct: 243 GAVVWRHALPNALSPIINVVLVNLAYLVAGVVVVEVIFVYPGIGQYMVDSVVNRHVPVVQ 302 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331 A ++A +Y+ +NL D+L + +PR+R Sbjct: 303 ATALLFAGVYIGLNLCADVLSVLANPRLR 331 >pir||F81699 peptide ABC transporter, permease protein TC0472 [imported] - Chlamydia muridarum (strain Nigg) >gi|7190513|gb|AAF39320.1| (AE002315) peptide ABC transporter, permease protein [Chlamydia muridarum] Length = 314 Score = 123 bits (307), Expect = 2e-27 Identities = 88/332 (26%), Positives = 154/332 (45%), Gaps = 36/332 (10%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 ++ +R+L + ++ V + F I IP DP G ++E + ++ K Y LD+P + Sbjct: 4 YIKKRLLFNLLSLWVVVTLTFFIIRTIPGDPFND-ENGNVLSEEILAILNKRYGLDKPLF 62 Query: 67 DQYVFLIKGLIT-----NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121 QY+ +K L+T + I RT ++T P + L + + L GI LGI Sbjct: 63 TQYLIYLKCLLTLDFGESLIYKDRTVIGIITTA---LPSSAILGLESLCLALFGGITLGI 119 Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181 ++A + T+ +++ +S PAF +G + YIF +KY L IA F + Sbjct: 120 LAAFYKRGCGRTIF-FSSIIQISVPAFVIGAFLQYIFAIKYSLLPIACWGDFSHTL---- 174 Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241 LP L M + S +L DYV AKG+ Sbjct: 175 ---------------------LPSIALAIAPMAFITQLTYASVSASLKKDYVLLAYAKGL 213 Query: 242 PKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300 +++ +H L AL P+++ L+ GT E +F +PG+G + + +I+ D+P+ Sbjct: 214 SPLKVLIKHVLPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPM 273 Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + ++ Y ++ I+L+ D+L A IDP++RY Sbjct: 274 TLGLSVFYGAFFMLISLLCDLLQAWIDPQIRY 305 >emb|CAA10910.1| (AJ222649) sapB [Erwinia chrysanthemi] Length = 313 Score = 123 bits (306), Expect = 3e-27 Identities = 76/254 (29%), Positives = 124/254 (47%), Gaps = 14/254 (5%) Query: 82 IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALL 141 + P+ + + P T +++++AF +L++GIPLGI + + ++ D ++ ALL Sbjct: 57 VSSTNGQPISEQLREVLPATVEVSLLAFLLLLLVGIPLGITTGVMQHKAADRIISGLALL 116 Query: 142 GVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEP------ITHIPMIDALLRGNFELFK 195 G P FWL LM FF+ ++G P H P + ++ Sbjct: 117 GFLLPVFWLALLMTLFFFLHLGWLPVSGRFELLYPALMDAWFVHSPYREEMIASAI---- 172 Query: 196 QHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRIYR-HALKNA 254 QH+ LP L R +R S + + +Y++ +G+P+ + R H L NA Sbjct: 173 QHMI---LPVLVLSVGPTTEVVRLMRISTTDVGTQNYIKAAIIRGLPRATVIRRHLLHNA 229 Query: 255 LVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVT 314 L PI+ LGLQF +L ITE VF PG+G + V AI+ DF + A + + +T Sbjct: 230 LPPIIPQLGLQFSTMLTLEMITEVVFNWPGIGGWLVNAIRQQDFAAISAGVMVVGALVIT 289 Query: 315 INLIVDILYAVIDP 328 IN++ DIL A+ +P Sbjct: 290 INVLSDILGAMANP 303 >pir||C71545 probable oligopeptide permease - Chlamydia trachomatis (serotype D, strain UW3/Cx) >gi|3328605|gb|AAC67791.1| (AE001293) Oligopeptide Permease [Chlamydia trachomatis] Length = 313 Score = 122 bits (302), Expect = 8e-27 Identities = 91/332 (27%), Positives = 152/332 (45%), Gaps = 36/332 (10%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 ++ RR+L + ++ V + F I IP DP G + E + L+K Y LD+P + Sbjct: 4 YIKRRLLFNLLSLWVVVTLTFFIIKTIPGDPFND-ENGNILSSETLALLKNRYGLDKPLF 62 Query: 67 DQYVFLIKGLIT-----NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121 QY+ +K L+T + I RT V++ I P + L + + L GI LGI Sbjct: 63 TQYLIYLKCLLTLDFGESLIYKDRT---VISIIAAALPSSAILGLESLCLSLFGGITLGI 119 Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181 ++A + S T+ +++ +S PAF +G + Y+F +KY IA Sbjct: 120 LAAFYKKSCGRTIF-FSSVIQISVPAFVIGAFLQYVFAIKYSCLPIA------------- 165 Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241 GNF + LP L M + S L DYV AKG+ Sbjct: 166 -----CWGNF-------SHTLLPSIALAITPMAFITQLTCASVSANLKKDYVLLAYAKGL 213 Query: 242 PKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300 ++ +H L AL P+++ L+ GT E +F +PG+G + + +I+ D+P+ Sbjct: 214 SPFKVLIKHILPYALFPVISYSAFLITTLMTGTFSIENLFCIPGLGKWFICSIKQRDYPI 273 Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + ++ Y ++ +L D+L A IDP++RY Sbjct: 274 TLGLSVFYGAFFMLTSLCCDLLQAWIDPQIRY 305 >pir||C64676 oligopeptide ABC transporter, permease protein - Helicobacter pylori (strain 26695) >gi|2314415|gb|AAD08295.1| (AE000630) oligopeptide ABC transporter, permease protein (oppB) [Helicobacter pylori 26695] Length = 348 Score = 121 bits (300), Expect = 1e-26 Identities = 90/356 (25%), Positives = 160/356 (44%), Gaps = 44/356 (12%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPA---------------------KAWAGGE 45 ++++R+L IPT++ + I F + P P +++ + Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63 Query: 46 KATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGK-RFPVTFQL 104 + +E +KK+Y D+P ++Y+ ++K + + + D+ K + PV+ L Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISL 123 Query: 105 AIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRL 164 + + I +I IPLGI A + N +D + + ++ + PAF L ++L +FF Sbjct: 124 GLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAF-LFAVVLIVFFAGGNY 182 Query: 165 TTIAGVPPFPEPITHIPMIDALLRGNFELF------KQHLARFWLPGFTLGFLGMGVTAR 218 H + L+ NFE K +L LP + G Sbjct: 183 W-------------HWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTL 229 Query: 219 FVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLL-GGTPIT 276 V+NSFL+ + YV KAKG RI Y H +NA++ +V F G+ + + Sbjct: 230 LVKNSFLDEMGKLYVLSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLI 289 Query: 277 ETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 E VF L G+G ++I + D+PVV +I+ ++ + +LI D+L VIDPR+ + Sbjct: 290 EIVFSLDGLGLLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRIDF 345 >pir||E72424 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4980546|gb|AAD35154.1|AE001692_11 (AE001692) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 328 Score = 121 bits (300), Expect = 1e-26 Identities = 83/334 (24%), Positives = 160/334 (47%), Gaps = 18/334 (5%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWA-----GGEKATKEAIELIKKMYHL 61 ++ +R+L IP + ++++ F+I P D + GE + A+E++KK Y L Sbjct: 4 YIAKRVLYAIPLLFVISIVSFIIIELPPGDYLTTYVMTLRQSGETIDQAALEVLKKRYGL 63 Query: 62 DEPWYDQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPL 119 D+P +Y + I +IT PV + +R T +++++ F + G + Sbjct: 64 DKPVIVRYFYWIGNIITKGDFGYSFMWEKPVSDLLNQRVWWTILISVLSTAFAWVFGFLI 123 Query: 120 GIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITH 179 G+ S + S D V + +G++TP F L ++L+ FV ++ + G+ F Sbjct: 124 GVYSGTHQYSIGDYVFTVLGYIGLATPNFLLALILLWFMFVTTGVS-LGGL--FSPEYAG 180 Query: 180 IPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239 P ++ F L W+P LG M R +R + L+ ++ YV +A+ Sbjct: 181 APW-------SWAKFVDLLKHIWIPVVVLGTGSMAGLIRVLRANLLDEINKPYVVAARAR 233 Query: 240 GVPKMR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298 GVP+ ++++ L+ A++P + G ++ G +T V LP +G+ + A+ + D Sbjct: 234 GVPERELVWKYPLRVAVIPFASTAGWALPQIVSGAVVTGIVLNLPTVGTLLLDALTSQDM 293 Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + ++ I ++ + LI DIL A +DPR+R+ Sbjct: 294 YLAGSLVLILSVFTIIGTLISDILLAWLDPRIRF 327 >pir||B72393 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4980801|gb|AAD35389.1|AE001712_2 (AE001712) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 334 Score = 121 bits (300), Expect = 1e-26 Identities = 95/346 (27%), Positives = 166/346 (47%), Gaps = 27/346 (7%) Query: 1 MANLKKFLIRRILTFI-PTIIGVTLIVFLIAYKIPADPAKAWAGG----EKATKEAI--- 52 M +K +LI R++ ++ +IG+TL VFLI P DP + + T EA+ Sbjct: 1 MKFIKSYLIPRLIQYVYMVVIGITL-VFLIPRLSPVDPIEQILNTRLRIQNTTPEAVIKM 59 Query: 53 -ELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNP--VMTDIGKRFPVTFQLAIIAF 109 E+++++Y L ++QYV L K L+ P V++ I P T L + Sbjct: 60 REVMEELYGLKGTLWEQYVNLWKRLLKGDFGPSMVYYPASVISLIRNSLPWTIGLLTLTT 119 Query: 110 FFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG 169 ++G+ +G I + S+ ++ + P + +L +F + + + G Sbjct: 120 LISWVLGLVIGAILGYYKESFGSKILTGILMAINPIPYYIFALTLLLLFCYVFPIFPLGG 179 Query: 170 VPPFPEPIT--HIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEA 227 + I+ ++D + G L LGF G G+ + + + E Sbjct: 180 GFSVGQKISLSWSFILDVIKHGTLPA---------LSLIILGFAGWGLGTKILVQNLRE- 229 Query: 228 LSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMG 286 DYV + + G+ +I + + L+NA++P VT LGL GG+ GG +TE +F PG+G Sbjct: 230 --EDYVVYARMMGLRNSKILFSYVLRNAMLPQVTGLGLSLGGIFGGAMMTEILFTYPGIG 287 Query: 287 SYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 + A A++ D+ V++A++F I T LI+D+LY +IDPR+RY Sbjct: 288 TLAYNAVRANDYNVMIAISFFSIIAVATALLILDLLYPLIDPRIRY 333 >pir||C71841 probable peptide ABC transporter, ATP-binding protein - Helicobacter pylori (strain J99) >gi|4155769|gb|AAD06746.1| (AE001544) putative Peptide ABC transporter, ATP-binding protein [Helicobacter pylori J99] Length = 348 Score = 120 bits (298), Expect = 2e-26 Identities = 90/356 (25%), Positives = 159/356 (44%), Gaps = 44/356 (12%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPA---------------------KAWAGGE 45 ++++R+L IPT++ + I F + P P +++ + Sbjct: 4 YILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYRASQ 63 Query: 46 KATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGK-RFPVTFQL 104 + +E +KK+Y D+P ++Y+ ++K + + + D+ K + PV+ L Sbjct: 64 GLESDLLENLKKLYGFDKPIGERYLLMLKKYLQFDFGESFYRQIKVIDLIKEKLPVSISL 123 Query: 105 AIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRL 164 + I +I IPLGI A + N +D + + ++ + PAF L ++L +FF Sbjct: 124 GFFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAF-LFAVVLIVFFAGGNY 182 Query: 165 TTIAGVPPFPEPITHIPMIDALLRGNFELF------KQHLARFWLPGFTLGFLGMGVTAR 218 H + L+ NFE K +L LP + G Sbjct: 183 W-------------HWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTL 229 Query: 219 FVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLL-GGTPIT 276 V+NSFL+ + YV KAKG RI Y H +NA++ +V F G+ + + Sbjct: 230 LVKNSFLDEMGKLYVVSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLI 289 Query: 277 ETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 E VF L G+G ++I + D+PVV +I+ ++ + +LI D+L VIDPR+ + Sbjct: 290 EIVFSLDGLGLLGYESIVSRDYPVVFGSLYIFTLLGLVASLISDLLCVVIDPRIDF 345 >pir||F83419 probable permease of ABC transporter PA1809 [imported] - Pseudomonas aeruginosa (strain PAO1) >gi|9947793|gb|AAG05198.1|AE004607_4 (AE004607) probable permease of ABC transporter [Pseudomonas aeruginosa] Length = 360 Score = 120 bits (298), Expect = 2e-26 Identities = 94/370 (25%), Positives = 166/370 (44%), Gaps = 61/370 (16%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK--------------------AWAGGEK 46 +++RR+L +PT+ G+ LI F+I P P + + GGE Sbjct: 4 YILRRLLLIVPTLFGILLINFIIIQAAPGGPVEQMIAKLEGFDAASGGATGRISGGGGEV 63 Query: 47 AT------------KEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD- 93 A E ++ I++MY D+ ++++ ++K + + +TD Sbjct: 64 AVAGSQYRGAQGLDPELVKEIERMYGFDKSAPERFMIMLKNYLHLDFGQSFFRDAKVTDL 123 Query: 94 IGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYL 153 I ++ PV+ L + + + ++ IPLGI A++ S D ++G + PAF L Sbjct: 124 IIEKLPVSISLGLWSTLIMYLVSIPLGIAKAVRHGSVFDIWTSSAIIVGYAIPAFLFAIL 183 Query: 154 MLYIFFVKYRLTTIAGVPP---FPEPITHIPMIDALLRGNFE---LFKQHLARFW---LP 204 ++ +F AG FP + L NF+ L + L FW LP Sbjct: 184 LVVLF---------AGGSYWDWFP--------LRGLTSNNFDQLSLGGKVLDYFWHLALP 226 Query: 205 GFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLG 263 L +NSFL+ + YV +AKG+ + R+ Y H +NA++ ++ L Sbjct: 227 VTALVIGNFATITLLTKNSFLDEIGKQYVVTARAKGLTERRVLYGHVFRNAMLLVIAGLP 286 Query: 264 LQFGGL-LGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDIL 322 G+ G+ + E +F L G+G + +A N D+PVV FI+ + + + LI DI+ Sbjct: 287 AALLGIFFTGSLLIEVIFSLDGLGLLSFEAAMNRDYPVVFGTLFIFTLFGLVMKLISDIV 346 Query: 323 YAVIDPRVRY 332 Y ++DPR+ + Sbjct: 347 YTLVDPRIDF 356 >pir||B71163 probable oligopeptide transport system permease protein AppB - Pyrococcus horikoshii >gi|3256908|dbj|BAA29591.1| (AP000002) 330aa long hypothetical oligopeptide transport system permease protein AppB [Pyrococcus horikoshii] Length = 330 Score = 119 bits (295), Expect = 5e-26 Identities = 90/334 (26%), Positives = 162/334 (47%), Gaps = 24/334 (7%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK-----AWAGGEKATKEAIELIKKMYHL 61 +L R+I+ ++ T I + +L+ +P DP + A + + + +++Y L Sbjct: 6 YLKRKIIVYVLTFIFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLRFYEQLYGL 65 Query: 62 DEPWYDQYV----FLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGI 117 ++P Y Q+V L KG + +I+ PV + P + + A +IG Sbjct: 66 NKPLYVQFVNFWVALFKGDLGYSIL---YRAPVSRLLKNALPYDIAILLPAIVLSWLIGN 122 Query: 118 PLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI 177 LG + K + ++ +F L S P FW L++Y+ VK AG+ P+ Sbjct: 123 WLGAFAG-KNKKYDKYMMPLFYFLA-SMPYFWFAMLLVYLVGVK------AGILPYQGAY 174 Query: 178 THIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237 + D + + + L + +P +L + +G A +RN + L +DYV++L+ Sbjct: 175 SP----DLIPTFSLKFVVDFLKHWIMPFLSLFIVMIGSWAIGMRNMIIYELEADYVRYLE 230 Query: 238 AKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297 A G + + +HA KNA++P +T L LQ G ++ G TE VF PG+G ++A + D Sbjct: 231 ALGASEKLMTKHAYKNAILPQITGLALQLGLMVAGAIATEIVFNYPGVGVLLMKAAMSQD 290 Query: 298 FPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 + ++ + I + N ++DI+YA+IDPRVR Sbjct: 291 YFLLQGGFLMIVISVLVANFVIDIVYALIDPRVR 324 >pir||E72107 peptide ABC transporter, permease protein CP0568 [imported] - Chlamydophila pneumoniae (strains CWL029 and AR39) >gi|4376470|gb|AAD18352.1| (AE001606) Oligopeptide Permease [Chlamydophila pneumoniae CWL029] >gi|7189480|gb|AAF38387.1| (AE002215) peptide ABC transporter, permease protein [Chlamydophila pneumoniae AR39] >gi|8978572|dbj|BAA98409.1| (AP002545) oligopeptide permease [Chlamydophila pneumoniae J138] Length = 314 Score = 119 bits (295), Expect = 5e-26 Identities = 87/333 (26%), Positives = 157/333 (47%), Gaps = 38/333 (11%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 ++ RIL + ++ V + FL+ IP DP G ++E ++ +K Y LD+P Y Sbjct: 4 YIKNRILFNLLSLWIVLTLTFLVMKTIPGDPFND-EGCNVLSEEVLQTLKSRYGLDKPLY 62 Query: 67 DQYVFLIKGLIT----NTII--DPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLG 120 QY + + N+++ D + +N + T FP++ L + + F + GI LG Sbjct: 63 QQYTQYLHSIAKLDFGNSLVYKDRKVTNIIST----AFPISAILGLQSLFLSIGGGIALG 118 Query: 121 IISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHI 180 I+ALK+ ++ ++L +S PAF L+ Y+F VK L IA F I Sbjct: 119 TIAALKKKKQRRYILGA-SILQISIPAFIFATLLQYVFAVKIPLLPIACWGSFTHTI--- 174 Query: 181 PMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKG 240 LP L M + +S AL+ DYV AKG Sbjct: 175 ----------------------LPTLALAVTPMAFIIQLTYSSVSAALNKDYVLLAYAKG 212 Query: 241 VPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFP 299 + +++ +H L A+ P ++ ++ GT E +F +PG+G + + +I+ D+P Sbjct: 213 LSPLKVVIKHILPYAIFPTISYSAFLTTTVITGTFAIENIFCIPGLGKWFICSIKQRDYP 272 Query: 300 VVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 V + ++ Y +++ +L+ D++ ++IDP++RY Sbjct: 273 VALGLSVFYGTLFMLSSLLSDLIQSIIDPQIRY 305 >pir||C72284 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4981749|gb|AAD36273.1|AE001776_9 (AE001776) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 334 Score = 119 bits (295), Expect = 5e-26 Identities = 100/345 (28%), Positives = 156/345 (44%), Gaps = 31/345 (8%) Query: 4 LKKFLIRRILT-FIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA---------TKEAIE 53 +K +LI R+L FI T +G++ I FL +P DP K + +E + Sbjct: 4 IKGYLIPRLLQYFIVTFLGLSAIFFLPRL-LPTDPVKQQLQQYQTFGVYIPPEQQEEMMR 62 Query: 54 LIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD--IGKRFPVTFQLAIIAFFF 111 ++++Y L+ ++QY+ K L+T + PV I + P T L + Sbjct: 63 TLRQLYGLEGTLWEQYLDFWKRLLTGDFGPSFSRFPVSVSKVISQALPWTVGLLSLTTIL 122 Query: 112 ILIIGIPLGIISALKRNSW---IDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIA 168 II + +G I R W +D VV I + A L Y+F Sbjct: 123 SWIIAVIVGGIVGYYRKRWMEALDVVVMIIRPIPYYVMALICLILFAYVF---------- 172 Query: 169 GVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEAL 228 P FP ++ I L + E + LP TL +G+ + ++ Sbjct: 173 --PIFP--LSGGIGIGQKLSFDLETILSIVKHGTLPALTLMIVGIAWQFQSMKLIVQIVK 228 Query: 229 SSDYVQFLKAKGVP-KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGS 287 S D+V + K GV KM + H ++NA++P++T LGLQFGG+ G ITE VF PG+G Sbjct: 229 SEDHVWYAKTAGVTEKMIVRNHVIRNAMLPMITQLGLQFGGIFSGALITEMVFAYPGIGW 288 Query: 288 YAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 AI D+ +++ V I I T L++D++Y + DPRVRY Sbjct: 289 ILYDAIMKADYNLIMGVMCISTIAITTSILLLDLIYPLFDPRVRY 333 >pir||D72282 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4981775|gb|AAD36297.1|AE001778_18 (AE001778) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 329 Score = 117 bits (290), Expect = 2e-25 Identities = 95/335 (28%), Positives = 158/335 (46%), Gaps = 20/335 (5%) Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK----AWAGGEKATKEAIELIKKMY 59 ++K+L ++IL +I T I + I +P +P +AG ++ K + + Sbjct: 1 MRKYLTKKILIYILTFFFAVTIDWAIPRFMPGNPINFLISRFAGLPESVKVLQSYFTQAF 60 Query: 60 HLDEPWYDQYVFLIKGLITNT--IIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGI 117 LD+P ++QY+ K L I PV I + P + + + A IG Sbjct: 61 GLDKPLWEQYINFWKALFRGDLGISIYMYPQPVAKVIARALPYSLIVLLPAVLLSFAIGN 120 Query: 118 PLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPI 177 G A K+ +D ++P FW G L+ +IF V L +AG F I Sbjct: 121 RFGAFVARKKR--LDNFALPVFYTLTASPYFWFGILLAWIFGVVIPLFPLAGAYSFG--I 176 Query: 178 THIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLK 237 T D +L L + LP +L + +G A +RN + L ++Y ++L+ Sbjct: 177 TPSFSWDFIL--------DFLHHWVLPFGSLFLVMLGGWAIGMRNMIIYELEANYSRYLE 228 Query: 238 AKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLD 297 A G + I ++A +NA++P +T L +Q G ++ G TE VF PG+G +Q I N D Sbjct: 229 ALGSSQRLIRKYAYRNAILPQITGLAIQLGTVVAGALTTEIVFSYPGIGYILMQGILNQD 288 Query: 298 FPVVVAVTFIYAIIYVTI-NLIVDILYAVIDPRVR 331 + ++ F++ I+ V + N +VDI Y +IDPR+R Sbjct: 289 Y-FLIQGCFLFIILGVLLANFLVDIFYVIIDPRIR 322 >pir||H72420 oligopeptide ABC transporter, permease protein - Thermotoga maritima (strain MSB8) >gi|4980560|gb|AAD35166.1|AE001694_2 (AE001694) oligopeptide ABC transporter, permease protein [Thermotoga maritima] Length = 335 Score = 115 bits (284), Expect = 1e-24 Identities = 97/349 (27%), Positives = 167/349 (47%), Gaps = 32/349 (9%) Query: 1 MANLKKFLIRRILT-FIPTIIGVTLIVFLIAYKIPADPAKAWA------GGE---KATKE 50 M+ ++++L+ R++T F+ +G+T++ FL + +P+DP +A+ GG + + Sbjct: 1 MSFVRRYLLPRLITYFLVVFVGLTIVFFLPRF-LPSDPIQAYIDRLITQGGNLNPEYFNK 59 Query: 51 AIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDP--RTSNPVMTDIGKRFPVTFQLAIIA 108 +E IK++Y L ++QYV K L+ + PVM I + P T L + Sbjct: 60 LVETIKELYGLQGSLWNQYVNFWKRLLKGDFGPSYFQFPTPVMKLIRQSLPWTAWLLFVT 119 Query: 109 FFFILIIGIPLGIISA-LKRNSWI---DTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRL 164 IIG LG ++ W+ D + + + A L L+ YIF Sbjct: 120 TVISWIIGNILGGLAGYFSDKKWVKILDGIAMVIRPMPYYILALGLLILLAYIF------ 173 Query: 165 TTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSF 224 P FP I I ++E L +LP +L +G+ + ++ Sbjct: 174 ------PIFP--IGGGFAIGMKFTFSWENLLILLKHAFLPALSLVLIGVFSWFQAMKLVV 225 Query: 225 LEALSSDYVQFLKAKGVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFGLP 283 + DYV++ K GV + RI R + ++NA++P +T L L G + GG ITE VF P Sbjct: 226 QSVKTEDYVKYAKMGGVEERRIVRRYVIRNAMLPQITGLALSLGQIFGGALITEIVFSYP 285 Query: 284 GMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 G+GS AI D+ +++ ++ + ++ T L++D+LY + DPRVRY Sbjct: 286 GIGSLLYNAIFTGDYNLLMGISTLSILLVTTSILVIDLLYPLFDPRVRY 334 >pir||H75068 dipeptide abc transporter, permease protein (dppb) PAB1344 - Pyrococcus abyssi (strain Orsay) >gi|5458958|emb|CAB50445.1| (AJ248287) dipeptide ABC transporter, permease protein (dppB) [Pyrococcus abyssi] Length = 330 Score = 114 bits (282), Expect = 2e-24 Identities = 94/340 (27%), Positives = 161/340 (46%), Gaps = 32/340 (9%) Query: 5 KKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK-----AWAGGEKATKEAIELIKKMY 59 K++L R+I+ + T + + +L+ +P DP + A + + ++ + +Y Sbjct: 4 KQYLKRKIVIYFLTFLFAVTLNWLLPRLMPGDPIQIMINSALGLSPQERETLLKFYEDLY 63 Query: 60 HLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKR-FPVTFQLAIIAFFFILIIGIP 118 L++P Y Q++ K L+ + +++I K P + A IIG Sbjct: 64 GLNKPLYVQFINFWKSLLRGDLGYSILYRDSVSNIIKHALPYDIAILFPAIVLSWIIGNW 123 Query: 119 LGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG------VPP 172 LG ++ K + ++ +F L S P FW +++Y VK + G VP Sbjct: 124 LGALAG-KNKKYDKYLMPVFYFLA-SIPYFWFAMVLVYFLGVKLNIFPYQGAYSQNLVPS 181 Query: 173 FPEPITHIPMIDALLRGNFELFKQHLARFW-LPGFTLGFLGMGVTARFVRNSFLEALSSD 231 F IT I +D L + W LP +L + +G A +RN + L +D Sbjct: 182 FS--ITFI--VDFL-------------KHWILPFLSLFIVMIGSWAIGMRNMIIYELEAD 224 Query: 232 YVQFLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQ 291 YV++L+A G + + +HA +NA++P VT L LQ G ++ G TE VF PG+G + Sbjct: 225 YVRYLEALGASEKLLTKHAYRNAILPQVTGLALQLGLMVAGAIATEIVFNYPGVGVLLMH 284 Query: 292 AIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 A + D+ ++ + I + N I+DI+YA+IDPRVR Sbjct: 285 AALSQDYFLLQGGFLMVIIAVLVANFIIDIVYALIDPRVR 324 >pir||D72059 peptide ABC transporter, permease protein, probable CP0150 [imported] - Chlamydophila pneumoniae (strains CWL029 and AR39) >gi|4376893|gb|AAD18737.1| (AE001644) Oligopeptide Permease [Chlamydophila pneumoniae CWL029] >gi|7189086|gb|AAF38032.1| (AE002176) peptide ABC transporter, permease protein, putative [Chlamydophila pneumoniae AR39] Length = 493 Score = 109 bits (271), Expect = 4e-23 Identities = 79/252 (31%), Positives = 124/252 (48%), Gaps = 21/252 (8%) Query: 90 VMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFW 149 V++++ KR + L+I+ ++ G+I ALKRN WID + L+ S P F Sbjct: 247 VISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFV 306 Query: 150 LGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQH---------LAR 200 +L F + + P T IPM + LR E+F + ++ Sbjct: 307 AVPWILDNFVINKTI-----------PFTTIPMPYSGLRSPPEVFNELSTLGRIFDLVSH 355 Query: 201 FWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIV 259 +LP + + + +R R+ FLE LS D++ KA+G+ I Y+H KNA V IV Sbjct: 356 GFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIV 415 Query: 260 TVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIV 319 T L G LLGG + ET+F + G G++ QAI N D VV+ + + + + L+ Sbjct: 416 TSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLG 475 Query: 320 DILYAVIDPRVR 331 DI Y ++DPRV+ Sbjct: 476 DICYVLLDPRVQ 487 >dbj|BAA98805.1| (AP002547) oligopeptide permease [Chlamydophila pneumoniae J138] Length = 493 Score = 109 bits (271), Expect = 4e-23 Identities = 79/252 (31%), Positives = 124/252 (48%), Gaps = 21/252 (8%) Query: 90 VMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFW 149 V++++ KR + L+I+ ++ G+I ALKRN WID + L+ S P F Sbjct: 247 VISEVIKRLRCSLVLSILPMIVGFVLCQIFGMIMALKRNRWIDHSLNFIFLILFSIPVFV 306 Query: 150 LGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQH---------LAR 200 +L F + + P T IPM + LR E+F + ++ Sbjct: 307 AVPWILDNFVINKTI-----------PFTTIPMPYSGLRSPPEVFNELSTLGRIFDLVSH 355 Query: 201 FWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIV 259 +LP + + + +R R+ FLE LS D++ KA+G+ I Y+H KNA V IV Sbjct: 356 GFLPFCAVSYGALAAQSRLSRSIFLEVLSQDFICAAKARGLRWFDILYKHVGKNAAVSIV 415 Query: 260 TVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIV 319 T L G LLGG + ET+F + G G++ QAI N D VV+ + + + + L+ Sbjct: 416 TSLASSLGTLLGGALVVETLFNIDGFGNFFYQAILNRDHNVVLFSVLVGSALSLVGYLLG 475 Query: 320 DILYAVIDPRVR 331 DI Y ++DPRV+ Sbjct: 476 DICYVLLDPRVQ 487 >emb|CAA61523.1| (X89237) oligopeptidepermease [Streptococcus pyogenes] Length = 500 Score = 109 bits (269), Expect = 6e-23 Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 27/230 (11%) Query: 106 IIAFFFIL---IIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKY 162 +I FF ++ I+G+PLG+ A +N++ D +T F L + + +V Sbjct: 286 VIGFFGVMFSHIVGLPLGLFMARFKNTYFDR-------FSTATMTFMLALPSIAVIYVVR 338 Query: 163 RLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRN 222 L + G+P PM+ A + LP LG L + T + R Sbjct: 339 FLGGMVGLP------DSFPMLGA----------SDPKSYILPALILGILNIPTTVIWFRR 382 Query: 223 SFLEALSSDYVQFLKAKGVPKMRIYR-HALKNALVPIVTVLGLQFGGLLGGTPITETVFG 281 ++ +SD+V+F ++KG+ + IYR H KNA+VPIV+ + +GG +TETVF Sbjct: 383 YLVDLQASDWVRFARSKGLSESEIYRGHLFKNAMVPIVSGVPASIILAIGGATLTETVFA 442 Query: 282 LPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 PGMG + +I++ + ++V +TFI+ ++ + L+ DI+ ++DPR++ Sbjct: 443 FPGMGKMLIDSIKSANNSMIVGLTFIFTVLSIVSLLLGDIVMTLVDPRIK 492 >sp|P33914|YEJB_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YEJB >gi|7442459|pir||A64987 hypothetical 40.4 kD protein in bcr 5' region - Escherichia coli (strain K-12) >gi|1736843|dbj|BAA15986.1| (D90849) Oligopeptide transport system permease protein OppB. [Escherichia coli] >gi|1788504|gb|AAC75239.1| (AE000307) putative transport system permease protein [Escherichia coli K12] Length = 364 Score = 108 bits (268), Expect = 8e-23 Identities = 92/372 (24%), Positives = 153/372 (40%), Gaps = 60/372 (16%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKA-------------------------- 40 +LIRR+L IPT+ + I F I P P Sbjct: 4 YLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRASHA 63 Query: 41 -----------WAGGEKATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPR-TSN 88 + GG E I I Y D+P +++Y ++ I D S Sbjct: 64 QTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLFRSA 123 Query: 89 PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAF 148 V+T I PV+ L + + I ++ IPLGI A+ S D F ++G + PAF Sbjct: 124 SVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAIPAF 183 Query: 149 WLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFK------QHLARFW 202 L ++L +FF + FP + L+ NF+ +L Sbjct: 184 -LFAILLIVFFAGGSYFDL-----FP--------LRGLVSANFDSLPWYQKITDYLWHIT 229 Query: 203 LPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTV 261 LP G +NSFL+ + YV +AKGV + I ++H +NA++ ++ Sbjct: 230 LPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAG 289 Query: 262 LGLQFGGLL-GGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVD 320 F + G+ + E +F L G+G +A + D+PV+ +I+ +I + +N++ D Sbjct: 290 FPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSD 349 Query: 321 ILYAVIDPRVRY 332 I Y ++DPR+ + Sbjct: 350 ISYTLVDPRIDF 361 >gb|AAK41511.1| Oligo/dipeptide transport, permease protein (dppB-1) [Sulfolobus solfataricus] Length = 348 Score = 108 bits (268), Expect = 8e-23 Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 20/292 (6%) Query: 47 ATKEAIELIKKMYHLDEPWYDQYVFLIKGLI------TNTIIDPRTSNPVMTDIGKRFPV 100 A ++ E + Y L++P D+Y + L+ + P S V + I P Sbjct: 67 AVEKYRESLIAAYGLNQPIIDKYFIQMYNLMRFDFGTAYFLQAPSGSREVSSIIAYYLPN 126 Query: 101 TFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFV 160 T L A ++ G +G++SA K W + V+ I A++ S P +WLG++++ Sbjct: 127 TILLFTTATIVFIVAGTIIGLLSA-KSKFW-EKVIAIIAVIHSSIPTWWLGFVLIAALAY 184 Query: 161 KYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFV 220 ++ G+ P P + F+ L LP T+ + +G A V Sbjct: 185 AVKVFPPGGMTSVPPP-----------KNPFDYGISVLYHMALPLITIFIVNVGGFAYIV 233 Query: 221 RNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETV 279 R+ + D+V KA+G+P RI YRH L++ I T L G LGG+ TE V Sbjct: 234 RSLVTSIMKEDFVITAKARGLPASRILYRHVLRSGSPSIATQAILALAGSLGGSLTTEVV 293 Query: 280 FGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 F PG+G AI D PV++ +T++ I+ + + +++Y ++DPR++ Sbjct: 294 FEWPGVGLLTYVAITLNDLPVILGITYVLTIVLLLGLFLGELVYGLLDPRIK 345 >gb|AAG20458.1| (AE005118) oligopeptide ABC permease; AppB [Halobacterium sp. NRC-1] Length = 326 Score = 108 bits (267), Expect = 1e-22 Identities = 85/343 (24%), Positives = 150/343 (42%), Gaps = 34/343 (9%) Query: 4 LKKFLIRRIL-TFIPTIIGVTLIVFLIAYKIPADPAKAW-----AGGEKATKEAIELIKK 57 +K ++++R+L TF+ I +TL L+ K+ +GG+ ++ E ++ Sbjct: 1 MKWYIVKRVLWTFVVMWIALTLTFGLLVASPDTGQTKSVMSCSASGGD--AQQCREQYRE 58 Query: 58 MYHLDEPWYDQYVFLIKGLIT-NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIG 116 +LD+P ++YV + + T N S VM I + +P T Q AI I+G Sbjct: 59 RQNLDKPITERYVNYVTNMATLNWGWSESRSQSVMAAISEAWPYTAQYAIPVLVVSTILG 118 Query: 117 IPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEP 176 LG+ SA K + D + G+S P FW +++ + Sbjct: 119 YGLGLYSAYKPYTKADYLGSFVGFFGISIPNFWFALVLIILLG----------------- 161 Query: 177 ITHIPMIDALLRGNFELFK-----QHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSD 231 TH I + + + ++ + +P F L + R+ R +E ++ + Sbjct: 162 -THFEFISTYYQSGIPINQGWASMANITQLLIPSFVLLTASLAWQMRYSRAQAIEQMNQE 220 Query: 232 YVQFLKAKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLL-GGTPITETVFGLPGMGSYA 289 +V+ KAKG + R+ H + A VP+ T + G+ I E +F +PG+G Sbjct: 221 FVKVAKAKGASQWRLMIHHVFRMAAVPLTTSFVSSLLAIFWSGSVIIEQIFSIPGLGLMT 280 Query: 290 VQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 AI D +V+A T I + + NLI D+ Y ++DPR+ Y Sbjct: 281 FTAITEQDTTLVLATTMITVFLAIIGNLIEDVSYTILDPRIDY 323 >pir||H83388 probable permease of ABC transporter PA2059 [imported] - Pseudomonas aeruginosa (strain PAO1) >gi|9948067|gb|AAG05447.1|AE004632_6 (AE004632) probable permease of ABC transporter [Pseudomonas aeruginosa] Length = 357 Score = 107 bits (265), Expect = 2e-22 Identities = 81/357 (22%), Positives = 151/357 (41%), Gaps = 39/357 (10%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPA-----------------KAWAGGEKATK 49 +L+RR+ +PT++G+ LI F I P P + GG A + Sbjct: 4 YLLRRLALILPTLLGILLINFAIVQAAPGGPVDQAIARLQGVDGGGPLGRGGEGGHGALE 63 Query: 50 -----------EAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD-IGKR 97 + + +++ Y D+P + ++ + + + D I ++ Sbjct: 64 PQRHGETGIDPQLVAALERQYGFDKPPLQRLWLMLSSYARLDFGESFYRDARVIDLIAEK 123 Query: 98 FPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYI 157 PV+ L + A ++ IPLG+ A++ S D ++G + P F +++ + Sbjct: 124 LPVSLSLGLWATLITYLVSIPLGVAKAVRHGSAFDLWSSALVVIGYAVPGFLFAIVLIVL 183 Query: 158 FFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTA 217 F L P+ + A G F +L LP +L G Sbjct: 184 FAGGSYLDWF--------PLRGLASEGAERLGPLARFADYLWHLALPVGSLVVGGFASLT 235 Query: 218 RFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQFGGLL-GGTPI 275 +NSFL+ +S YV +AKG+ + R+ Y H +NA++ +V L + G+ + Sbjct: 236 LLTKNSFLDEISRQYVATARAKGLSERRVLYGHVFRNAMLLVVAGLPAALVSVFFTGSLL 295 Query: 276 TETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 E +F L G+G +A D+PVV FI+ ++ + + L D+ Y+++DPR+ + Sbjct: 296 IEVLFSLDGLGLMGYEAALGRDYPVVFGSLFIFTLLGLLVKLAGDLAYSLVDPRIDF 352 >pir||E82442 probable peptide ABC transporter, permease protein VCA0590 [imported] - Vibrio cholerae (group O1 strain N16961) >gi|9658001|gb|AAF96492.1| (AE004389) peptide ABC transporter, permease protein, putative [Vibrio cholerae] Length = 360 Score = 107 bits (265), Expect = 2e-22 Identities = 84/368 (22%), Positives = 157/368 (41%), Gaps = 56/368 (15%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAK--------------------------- 39 +++RR+L +PT+ + I F I P P + Sbjct: 4 YILRRLLLVVPTLWAIITINFFIIQIAPGGPVEQAIAQLEGNTSGVMERFTGGGQEVAAP 63 Query: 40 ------AWAGGEKATKEAIELIKKMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTD 93 + G + +E I + + D+P +++Y ++K T + + D Sbjct: 64 TDAPVSGYKGSRGLDPQVVEEITRRFGFDKPIHERYFQMLKDYATFNFGESLFRGGDVID 123 Query: 94 -IGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGY 152 I +R PV+ L + + I +I IPLGI A+ S D ++G + P F Sbjct: 124 LIVERLPVSISLGLWSTLLIYLISIPLGISKAIHHGSRFDVWSSAVVIIGYAIPGFLFAI 183 Query: 153 LMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFEL---FKQHLARFW---LPGF 206 +++ +F + FP + L+ NF ++Q L FW LP Sbjct: 184 ILIILFASGNYFSW------FP--------LRGLVSDNFASLPWYQQVLDYFWHLTLPTL 229 Query: 207 TLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHALKNALVPIVTVLGLQ 265 + G + +NSFL+ ++ YV +AKG+ + RI Y+H +NA++ I+ Sbjct: 230 AMVIGGFATLSMLTKNSFLDEINKQYVVTARAKGLDERRILYKHVFRNAMLIIIAGFPSA 289 Query: 266 FGGLL-GGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYA 324 F + G+ + E +F L G+G +A D+P+V + +I ++ + +++I D+ Y Sbjct: 290 FISIFFTGSMLIEVMFSLEGIGLLGFEATIQRDYPLVFSSLYIMTLLGLLLSIISDLTYM 349 Query: 325 VIDPRVRY 332 +DPR+ + Sbjct: 350 WVDPRIDF 357 >emb|CAA64609.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei] Length = 315 Score = 105 bits (259), Expect = 9e-22 Identities = 82/320 (25%), Positives = 139/320 (42%), Gaps = 21/320 (6%) Query: 15 FIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAI-ELIKKMYHLDEPWYDQYVFLI 73 ++ ++ + +I F + +P DP K G + E + E ++ LD P Y+Q+ + Sbjct: 11 YLASLALIIIINFTLPRLMPGDPVKNLIGEDVYVSEQVMEELRAELGLDRPLYEQFASFV 70 Query: 74 KGLITNTI-IDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWID 132 ++ + PV + R T + G LG ++ K Sbjct: 71 SDILHLDLGYSYHLHAPVAEILLDRIGWTLLFVGSSVIIGAFAGSLLGALAGWKPEKRTS 130 Query: 133 TVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFE 192 V + ++ TP ++L L LYIF + L G PE I ++L Sbjct: 131 RVTGLAFIVFSCTPPYFLALLSLYIFSFRLGLFPSKGFYDAPE-------IGSILH---- 179 Query: 193 LFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPKMRI-YRHAL 251 HL +LP + +R S ++ Y + +AKG+ + +RH L Sbjct: 180 ----HL---FLPICVMSVFSASRNFLVMRGSVIQEKKELYALYARAKGLNDTGVLFRHVL 232 Query: 252 KNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAII 311 KN+ +PI+T+L L FG L G E +F L GMG+ AI D+P++ + ++ Sbjct: 233 KNSSLPIITLLALDFGFLFSGALFIEIIFSLNGMGTLIYGAIMGKDYPLLQGAFLVISLT 292 Query: 312 YVTINLIVDILYAVIDPRVR 331 + N++ D+LYA+IDPRVR Sbjct: 293 ALLANMLADLLYALIDPRVR 312 >emb|CAA68074.1| (X99740) oligopeptide transport system permease protein homolog [Mycoplasma hominis] Length = 381 Score = 104 bits (257), Expect = 2e-21 Identities = 83/358 (23%), Positives = 163/358 (45%), Gaps = 50/358 (13%) Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGE-KATKEA----------I 52 + K++++RI I T+ +++ V+++ +P A + +A+K++ + Sbjct: 1 MTKYILQRIAFAILTLFIISIFVYVLVAAFGNNPVNDLAQAQFQASKKSGLTYTEILHKL 60 Query: 53 ELIKKMYHLDEP--------WYDQYVFLIK-----GLITNTIIDPRTSNPVMTDIGKRFP 99 E+ + + D P Y Y+ I G + N +P ++ + T++ K F Sbjct: 61 EIENGLRYKDNPDVLVPIIVRYGNYMKNIFTKGDFGFLYNPANNPNSA--LYTNMAKLFF 118 Query: 100 VTFQLAII----AFFFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLML 155 Q ++I FF I+GI +G+I+ KR W D +F L+ V+ P+F L +++ Sbjct: 119 TPLQYSLIITVPTFFISSILGIAIGVIAGYKRGKWFDVSSNVFVLIFVAIPSFILAPIVI 178 Query: 156 YIFFVKYRLTTIAGVPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGV 215 I I+ V P P + F + P F + + Sbjct: 179 TISVA----LGISSVVPRPGE---------------QSFGVMFVSYLPPIFVMSITSLAG 219 Query: 216 TARFVRNSFLEALSSDYVQFLKAKGVPKMRIY-RHALKNALVPIVTVLGLQFGGLLGGTP 274 + RN + L+S++V K KG+ +I+ ++ L+N +P+ +++ F GLL G+ Sbjct: 220 YVTYTRNQVITVLTSNFVLIAKTKGLSSSQIFFKYVLRNISIPLFSLVFGSFIGLLSGSI 279 Query: 275 ITETVFGLPGMGSYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVRY 332 I E + +PG V A + VV+ T + I + ++I+D+ YA++DP+++Y Sbjct: 280 IIEQYWQVPGTSQIIVNAFPTGEINVVMFSTLFFTFISLIADIIIDVSYAILDPKIKY 337 >pir||E81253 probable peptide ABC-transport system permease protein Cj1583c [imported] - Campylobacter jejuni (strain NCTC 11168) >gi|6969000|emb|CAB73571.1| (AL139079) putative peptide ABC-transport system permease protein [Campylobacter jejuni] Length = 314 Score = 103 bits (254), Expect = 3e-21 Identities = 81/330 (24%), Positives = 150/330 (44%), Gaps = 24/330 (7%) Query: 4 LKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKA-TKEAIELIKKMYHLD 62 LK+ + + F T + L+ F + + A+A G + +KE ++ I++ LD Sbjct: 2 LKRLVFSIFIAFFSTFLCFVLLHF-------SKGSIAYANGVNSQSKEFVQRIEQNLGLD 54 Query: 63 EPWYDQY-VFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121 +P +QY ++L K L + + + V+ I +R TF L A + ++ + L + Sbjct: 55 KPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSALMLLFLLSVFLAL 114 Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181 + + S+ID ++ A + P F L L + IF + +++ + G + Sbjct: 115 LGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPVMGSSDIGFEDDFLN 174 Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241 ++ L+ L HLA F R RN E+ S ++Q L A+ + Sbjct: 175 RLEHLILPVLVLVLSHLALF---------------LRIARNFINESFSQIFIQNLYARAL 219 Query: 242 PKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVV 301 + IY LK +L PIV G + GT + E+VF G+GS ++I D+P+V Sbjct: 220 REKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIFKDYPIV 279 Query: 302 VAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 +A+ F ++ + DI+ +++PR+R Sbjct: 280 LALIFFSVLLAAFFTFLSDIVARILNPRLR 309 >emb|CAC11413.1| (AL445063) ABC-transporter (orf B) related protein [Thermoplasma acidophilum] Length = 331 Score = 101 bits (248), Expect = 2e-20 Identities = 88/333 (26%), Positives = 156/333 (46%), Gaps = 23/333 (6%) Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIEL-IKKMYHLDEPWY 66 + R+I+ + II V +I++++ +P P + G K E ++ I+K L + Sbjct: 12 ITRKIIQDVVLIIFVVVILYVVFRIMPGSPVDLFLHGLKHPTEQEKITIEKQLGLYGGKF 71 Query: 67 DQYVFLI--KGLIT-NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 FLI + + T N D T V+ I + P T L A IGIPLGI + Sbjct: 72 SLTNFLIYLRDMFTFNFGEDYYTGQSVIFVIKQALPYTLLLFGSAAVISFAIGIPLGIYT 131 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE----PITH 179 + KR ++ G+ T + L + ++F + + + + FP PI++ Sbjct: 132 SFKRGKKSES--------GIITASTLLNSIPFFVFAIIFFVYLAGDLHIFPLRSIFPISY 183 Query: 180 IPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239 I + L+ + EL +LA +P L + +R + + L D++ +AK Sbjct: 184 I--VHPTLK-SIELILYYLA---MPIIVLVIVEAAGHLLTMRAAMVSVLGEDFITTARAK 237 Query: 240 GVPKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298 GV + I + HA +NA++P+ T + L+F L+ G I E +F + GMG+ A D+ Sbjct: 238 GVSERGIMFHHAARNAMIPVSTRMALEFAFLMSGAVIVEVIFSIHGMGTVLYDATLQEDY 297 Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 PV F+ +II + +D ++A +DPR++ Sbjct: 298 PVSEGALFVISIIVILAYSAIDFIHAWLDPRIK 330 >dbj|BAB13783.1| (AB038238) NikB [Vibrio parahaemolyticus] Length = 320 Score = 98.3 bits (241), Expect = 1e-19 Identities = 81/326 (24%), Positives = 149/326 (44%), Gaps = 24/326 (7%) Query: 8 LIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYD 67 L+R L + T++G+ L+V P DP + GG + + E + H+ Sbjct: 9 LLRTFLLLVVTVMGIVLLVS----HSPTDPVNEFLGGNVFSVSS-EQRDNIAHILGTNMS 63 Query: 68 QYVFLIKGLITNTIIDPRTSN----PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIIS 123 + L L+ T + SN PV + +R + L I ++ L G LG+++ Sbjct: 64 ELDRLTDWLVQMTHGEWGYSNYYQQPVSDVLKERSGNSLNLLIFSWSLTLCFGYALGLVA 123 Query: 124 ALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183 LK S + + + + P+FW+G +++ IF +K + G T + ++ Sbjct: 124 GLKNKSTLGKCLYYGSWILSCLPSFWVGIILIAIFALKLHWFPVGGA-------TSLSIV 176 Query: 184 DALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVPK 243 ++ +GN QH+ LP L +G+G + + L SDYV++ + +PK Sbjct: 177 NSTWQGNL----QHMI---LPIVCLVLVGIGPLILHTKEKVVSLLDSDYVKYAQMHQIPK 229 Query: 244 MR-IYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 R I ++ +K +LVP VT+ F LLG + E+VF PG+G+ V + D +++ Sbjct: 230 KRLICQYLIKGSLVPTVTLHFAAFAELLGNAVLIESVFNYPGLGNAFVYSGLTKDSHLLL 289 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDP 328 A++ ++ T N +I+ + P Sbjct: 290 ALSLCTTLMIATGNAFANIIQRISQP 315 >gb|AAB67064.1| (U94729) putative transmembrane protein [Salmonella typhimurium] Length = 323 Score = 97.5 bits (239), Expect = 2e-19 Identities = 78/329 (23%), Positives = 137/329 (40%), Gaps = 23/329 (6%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGE--KATKEAIELIKKMYHLDE 63 K L I ++ V F++ P DP +A+ G + E I + LD+ Sbjct: 2 KLFFSHFLRLIILLVLVAAGTFILLSFSPVDPIRAYIGNDLLHVPPEQYARIAARWGLDQ 61 Query: 64 PWYDQYVFLIKGLITNTIIDPRTSN-PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGII 122 P ++++ L+ + N PV + I +RF +F L A+ ++G+ LG + Sbjct: 62 PLWERFGHWFWRLLQGDMGYSMLFNMPVASVIRERFATSFALLAGAWLLSGVLGVTLGFL 121 Query: 123 SALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPM 182 + + W D ++ + L S P FW+ L + P+ +P+ Sbjct: 122 AGRFLHRWPDKMICRISYLLSSLPTFWIAMLSGAVC----------------RPLAVLPV 165 Query: 183 IDALLRGN---FELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAK 239 A GN L + L LP L LGMG A R + S++++F +A+ Sbjct: 166 CCAWDPGNNAGTALLSERLRHLVLPVCALSLLGMGQIALHTREKIASVMKSEFIRFARAQ 225 Query: 240 GVPKMRIYRH-ALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDF 298 G + RH L++A+ P + + G L+GG + E VF PG+G + A D Sbjct: 226 GDKGWSLLRHQVLRHAITPALCLQFASLGELMGGALLAEKVFAYPGLGQATIDAGLRGDV 285 Query: 299 PVVVAVTFIYAIIYVTINLIVDILYAVID 327 P+++ + ++ N I L V++ Sbjct: 286 PLLMGIVLFCTLLVFAGNTISAWLVVVLN 314 >gb|AAK43148.1| ABC transporter, permease [Sulfolobus solfataricus] Length = 342 Score = 95.2 bits (233), Expect = 1e-18 Identities = 87/343 (25%), Positives = 146/343 (42%), Gaps = 30/343 (8%) Query: 5 KKFLIRR-ILTFIPTIIGVTLIVFLIAYKIPADPAKA-------WAG---GEKATKEAIE 53 + FLI+R I I +G+T I F++ IP + AG G+ +E Sbjct: 3 RDFLIKRGIYYIIVWFVGIT-IDFILPRLIPGSALASIIYSRIGGAGSNYGQNVQQEIQI 61 Query: 54 LIKKM--YHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVM--TDIGKRFPVTFQLAIIAF 109 L++++ +P Y QY +K ++T T PV T I + P TF + I A Sbjct: 62 LVQQLGLAQYQQPLYIQYFNYLKEIVTLNFGVSLTEFPVSVSTIITEAAPWTFGIVIPAI 121 Query: 110 FFILIIGIPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAG 169 IG LG ++AL R D + + + P F G +++ + + + G Sbjct: 122 VASFFIGNLLGRVAALSRGKISDYAILGLMMFLYTFPVFVTGEILIEVLAIDLHIFPTGG 181 Query: 170 ---VPPFPEPITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLE 226 F +P +P I +++ LP TL + +RN+ + Sbjct: 182 QYNTFQFLKPTMSLPFIWSVIYHAI-----------LPTLTLILFSLAGWIMGMRNNMIP 230 Query: 227 ALSSDYVQFLKAKGVPKMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMG 286 L DY+ + + GV + + A + AL+P T + G + G E +F G+G Sbjct: 231 ILQEDYMNYYRLMGVSEKMVASKAYRLALLPNFTSFSISLGYSVLGAVAIEYLFNYAGLG 290 Query: 287 SYAVQAIQNLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPR 329 + QAI LD+P++ + F+ V N + DI+Y +IDPR Sbjct: 291 YFFNQAITGLDYPLLSGIFFMLVTAMVLSNFVADIIYTIIDPR 333 >gb|AAK43157.1| Maltose ABC transporter, permease [Sulfolobus solfataricus] Length = 322 Score = 94.8 bits (232), Expect = 1e-18 Identities = 80/329 (24%), Positives = 147/329 (44%), Gaps = 20/329 (6%) Query: 7 FLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWY 66 F++ + +P ++ + + +I+ + A AG E +L PWY Sbjct: 5 FVVITVNFILPRLMPGSALAVVISLIEGQNGVAATAGSSAIALEVSQLEAAFGLTPAPWY 64 Query: 67 DQYVFLIKGLITNTIIDPRT--SNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISA 124 QY I+G+ T + T PV++ I P T L ++ +G LG I+ Sbjct: 65 VQYAHYIQGIFTLNLGASITYYPTPVLSIILSGLPWTLFLVVVGAIIAFFLGSYLGSIAG 124 Query: 125 LKRNSWIDTVVRIFALLGVSTPAFW-LGYLMLYIFFVKYRLTTIAGVPPFPEPITHIPMI 183 R S D V+ I + + P+F L YL +++ V++ + I+ FP I P Sbjct: 125 FNRRSRKDLVILIITSILAALPSFVILMYLEMWLS-VQHGIFLIS----FPSKINTSP-- 177 Query: 184 DALLRGNFELFKQHLARFW-LPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGVP 242 ++++ L+RF+ LP L F + +RN+ L + +YV + + G+ Sbjct: 178 NSIMA---------LSRFYTLPIIALMFTSLSGFVLGMRNNMLHTIRDNYVTYAEILGLD 228 Query: 243 KMRIYRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPVVV 302 RI + KN+L+P +T + G + + E + PG+G + A+ + D P++ Sbjct: 229 HNRIRKMVYKNSLLPNITAFAIILGLAISQSLTVEGLLTTPGVGFFFGLALTSKDLPLLQ 288 Query: 303 AVTFIYAIIYVTINLIVDILYAVIDPRVR 331 + AI+ + IV+ +Y ++DPR R Sbjct: 289 GIFLFIAIMLILSIAIVEAIYTILDPRAR 317 >gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhodococcus fascians] Length = 714 Score = 92.4 bits (226), Expect = 7e-18 Identities = 47/158 (29%), Positives = 85/158 (53%), Gaps = 7/158 (4%) Query: 22 VTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLDEPWYDQYVFLIKGLIT--- 78 ++ +VF + +P DPA AGG+ A+ IE I++ +L++P+ QY + G + Sbjct: 1 MSFLVFSLVALVPGDPAATLAGGDSASPATIEQIRQELNLNDPFLVQYKDWLVGAVQFDF 60 Query: 79 -NTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGIISALKRNSWIDTVVRI 137 N++ T PV ++ +R PVT LA+ F ++ + +G+I L+ N+++D V++ Sbjct: 61 GNSLY---TQQPVAEELAQRLPVTLSLAVAVFILVIPFSVIIGVIGGLRPNAFVDRVLQF 117 Query: 138 FALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPE 175 L VS P FW+ +++ IF V + G PF + Sbjct: 118 LTSLAVSMPPFWVALVLISIFAVNLGVLPAYGFSPFTD 155 >gb|AAK42786.1| ABC transporter, permease protein [Sulfolobus solfataricus] Length = 333 Score = 87.0 bits (212), Expect = 3e-16 Identities = 79/337 (23%), Positives = 139/337 (40%), Gaps = 22/337 (6%) Query: 6 KFLIRRILTFIPTIIGVTLIVFLIAYKIPADPA---------KAWAGGEKATKEAIELIK 56 K+LIRR+ + I I +I + + P PA + +A + I+ + Sbjct: 4 KWLIRRLASVIIAIFVTIVISWALLEFSPYSPANYIMQFINPQDFAQKPELYASLIDYLN 63 Query: 57 KMYHLDEPWYDQYVFLIKGLITNTIIDPRTSNPVMTDIGKRFPVTFQLAIIAFFFILIIG 116 + P + ++ L N ++ PV I P T + + + +G Sbjct: 64 TLRPHGNPLINAVNYIWNTLHGNLGFSIISNVPVAELIAVALPWTLFIVVTSILISFFLG 123 Query: 117 IPLGIISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFP-E 175 I LG R + D+V + + S P + L++YI Y + G Sbjct: 124 IRLGQKLGYLRGTKTDSVATVSLSILRSVPIYIYAVLLIYILAFIYHIFPTGGAYSIHVT 183 Query: 176 PITHIPMIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQF 235 P ++P I ++L F LP TL + + +R + + L D+V F Sbjct: 184 PGFNLPFIASVLYHAF-----------LPILTLTIVNLVGWILQMRANTIYVLGEDFVNF 232 Query: 236 LKAKGVPKMRIYRHAL-KNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQ 294 + GV K I + + KNA++P+ T L + G G+ E F PG+G+ + +I Sbjct: 233 AEISGVKKDIIEKKYIGKNAILPLYTSLIISIGFSFSGSVFVEQTFSYPGVGNLLINSIT 292 Query: 295 NLDFPVVVAVTFIYAIIYVTINLIVDILYAVIDPRVR 331 + D+P + V I + + NLI D+ Y+ +DPR + Sbjct: 293 SNDYPTEMGVFIIIIVAVIVGNLIADLTYSFLDPRAK 329 >emb|CAC17495.1| (AL450432) putative metal transport integral membrane protein [Streptomyces coelicolor] Length = 316 Score = 85.0 bits (207), Expect = 1e-15 Identities = 80/329 (24%), Positives = 132/329 (39%), Gaps = 21/329 (6%) Query: 3 NLKKFLIRRILTFIPTIIGVTLIVFLIAYKIPADPAKAWAGGEKATKEAIELIKKMYHLD 62 NL F RR+ + ++ ++ VF +P D A AG + + + E ++ LD Sbjct: 2 NLLAFAARRLAEAVVLLVLLSAAVFAATAVLPGDAVSAVAGVDASETQRAE-VRAELGLD 60 Query: 63 EPWYDQYVFLIKGLITNTIIDPRTSN-PVMTDIGKRFPVTFQLAIIAFFFILIIGIPLGI 121 P +Y G + + PV + R P + LA + + LG+ Sbjct: 61 RPAVQRYADWAAGAVRGDLGRGFVGERPVADVLTTRLPNSLLLAGLTLAVTAPLATLLGL 120 Query: 122 ISALKRNSWIDTVVRIFALLGVSTPAFWLGYLMLYIFFVKYRLTTIAGVPPFPEPITHIP 181 + L R D VV A + + P F + L++ + V + V P +P Sbjct: 121 WTGL-RGGVADRVVSTSAQILAAVPEFVVAALLVAVLAVWLEVLPRVSVIPLGGTPLDVP 179 Query: 182 MIDALLRGNFELFKQHLARFWLPGFTLGFLGMGVTARFVRNSFLEALSSDYVQFLKAKGV 241 DAL+ LP TL +G+ V R +R S + + Y + + GV Sbjct: 180 --DALV---------------LPVLTLSAVGLAVATRLLRASVADTAARPYCEAARLNGV 222 Query: 242 PKMRI-YRHALKNALVPIVTVLGLQFGGLLGGTPITETVFGLPGMGSYAVQAIQNLDFPV 300 +R+ RH L NA P V L L G L+G + E VF PG+G A+ D P+ Sbjct: 223 RGVRLAVRHILPNAAGPAVQALTLTTGALVGSAVVVENVFDYPGIGRELQLAVAARDVPM 282 Query: 301 VVAVTFIYAIIYVTINLIVDILYAVIDPR 329 V + + + + L+ D+ ++ R Sbjct: 283 VQGIATALVAVMLAVLLLGDVCARLLGAR 311 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.331 0.148 0.452 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 122499824 Number of Sequences: 2977 Number of extensions: 5290908 Number of successful extensions: 20648 Number of sequences better than 1.0e-10: 136 Number of HSP's better than 0.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 42 Number of HSP's that attempted gapping in prelim test: 20175 Number of HSP's gapped (non-prelim): 172 length of query: 332 length of database: 189,106,746 effective HSP length: 50 effective length of query: 282 effective length of database: 159,182,396 effective search space: 44889435672 effective search space used: 44889435672 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 40 (21.8 bits) S2: 165 (68.7 bits)