BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1873 (dppC-2) DE:dipeptide ABC transporter, permease protein
(dppC)
(387 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75118 dipeptide abc transporter, permease protein (dppc) P... 783 0.0
pir||E71014 probable dipeptide transport system permease protein... 726 0.0
pir||C72617 probable dipeptide transport system permease protein... 433 e-120
pir||E72720 probable oligopeptide transport system permease prot... 219 5e-56
pir||E75202 dipeptide abc transporter, dipeptide-binding protein... 217 2e-55
pir||E75454 peptide ABC transporter, permease protein - Deinococ... 206 3e-52
sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 206 5e-52
dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permeas... 204 2e-51
dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permeas... 203 3e-51
pir||E72371 oligopeptide ABC transporter, permease protein - The... 199 3e-50
pir||T34756 oligopeptide transport integral membrane protein - S... 197 2e-49
sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 196 5e-49
pir||D83082 probable permease of ABC transporter PA4504 [importe... 195 7e-49
pir||D64557 dipeptide ABC transporter, permease protein - Helico... 194 2e-48
sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 193 3e-48
pir||C82356 peptide ABC transporter, permease protein VC0173 [im... 193 3e-48
pir||D71130 probable oligopeptide transport permease protein APP... 189 7e-47
sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 187 3e-46
gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T... 185 1e-45
gi|10954944 Probable accE [Agrobacterium tumefaciens] >gi|649829... 184 2e-45
dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) ... 184 2e-45
pir||T03434 probable transport protein accE - Agrobacterium tume... 183 2e-45
gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-... 181 1e-44
emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter... 181 1e-44
dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [O... 180 2e-44
sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE... 180 3e-44
dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Ba... 180 3e-44
sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 179 4e-44
pir||E72289 oligopeptide ABC transporter, permease protein - The... 179 6e-44
pir||C38447 sporulation initiation protein spo0KC - Bacillus sub... 176 4e-43
sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 176 4e-43
emb|CAC11409.1| (AL445063) probable dipeptide transport system p... 174 1e-42
gi|11499358 dipeptide ABC transporter, permease protein (dppC) [... 172 7e-42
sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 171 1e-41
gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola] 170 2e-41
pir||A75381 peptide ABC transporter, permease protein - Deinococ... 170 3e-41
gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhod... 168 1e-40
pir||C72367 oligopeptide ABC transporter, permease protein - The... 166 5e-40
pir||S75778 oligopeptide transport system permease protein appC ... 164 2e-39
gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; Dp... 162 5e-39
sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 162 6e-39
pir||D72424 oligopeptide ABC transporter, permease protein - The... 161 1e-38
sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 160 3e-38
pir||H72451 probable peptide transport system permease protein A... 159 5e-38
sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN... 159 5e-38
pir||JC5121 oligopeptide permease-like protein - Synechococcus s... 156 4e-37
pir||D82242 oligopeptide ABC transporter, permease protein VC109... 155 1e-36
pir||T45277 oligopeptide transport integral membrane protein bld... 154 1e-36
pir||D70141 oligopeptide ABC transporter, permease protein (oppC... 153 3e-36
emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis] 153 3e-36
pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC... 153 3e-36
dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permeas... 153 4e-36
pir||C75573 peptide ABC transporter, permease protein - Deinococ... 153 4e-36
gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; Dp... 153 4e-36
gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis] 152 5e-36
pir||G75529 peptide ABC transporter, permease protein - Deinococ... 152 5e-36
gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borre... 152 7e-36
pir||G72215 oligopeptide ABC transporter, permease protein - The... 152 9e-36
gb|AAC69844.1| (AF076684) oligopeptide transporter putative memb... 151 2e-35
gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1] 150 4e-35
emb|CAC05749.1| (AL391751) putative peptide transport system int... 149 5e-35
pir||D72300 oligopeptide ABC transporter, permease protein - The... 148 8e-35
dbj|BAB04288.1| (AP001509) nickel transport system (permease) [B... 148 1e-34
gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [... 148 1e-34
gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T... 146 3e-34
pir||B75142 oligopeptide transport integral membrane protein. PA... 146 3e-34
sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI... 145 7e-34
pir||T35981 probable peptide transport permease - Streptomyces c... 144 2e-33
pir||T44599 oligopeptide transport system permease protein [impo... 143 5e-33
pir||H75026 oligopeptide abc transporter, permease protein (appc... 141 1e-32
pir||D70431 oligopeptide transport system permease - Aquifex aeo... 141 1e-32
pir||H71211 probable oligopeptide transport system permease prot... 137 3e-31
pir||A70789 probable peptidetransport system permease - Mycobact... 137 3e-31
dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus] 136 3e-31
gb|AAB38742.1| (U78885) transport system permease homolog [Liste... 135 8e-31
sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN... 134 1e-30
gi|10954709 hypothetical ABC-transporter gene~similar to dppC ge... 134 2e-30
sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P... 134 2e-30
gb|AAG20459.1| (AE005118) oligopeptide transport permease protei... 133 3e-30
gb|AAC69839.1| (AF076683) oligopeptide transporter putative memb... 133 3e-30
dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permeas... 131 1e-29
gb|AAC18098.1| (AF058302) membrane component of putative ABC tra... 131 1e-29
pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain ... 131 1e-29
pir||H72536 probable oligopeptide transport system permease prot... 129 4e-29
pir||D82170 peptide ABC transporter, permease protein VC1682 [im... 128 1e-28
gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus sol... 125 7e-28
pir||D71545 probable oligopeptide permease - Chlamydia trachomat... 124 1e-27
dbj|BAA98410.1| (AP002545) oligopeptide permease [Chlamydophila ... 124 2e-27
pir||F72107 peptide ABC transporter, permease protein CP0567 [im... 122 7e-27
pir||G81699 peptide ABC transporter, permease protein TC0473 [im... 122 1e-26
pir||C72282 oligopeptide ABC transporter, permease protein - The... 121 1e-26
pir||C71163 probable oligopeptide transport system permease prot... 120 2e-26
emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi] 120 2e-26
pir||C72059 peptide ABC transporter, permease protein, probable ... 118 1e-25
sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 117 2e-25
emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methan... 116 3e-25
sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 115 1e-24
pir||C71510 probable oligopeptide permease - Chlamydia trachomat... 115 1e-24
pir||F81668 peptide ABC transporter, permease protein, probable ... 112 6e-24
pir||G72428 oligopeptide ABC transporter, permease protein - The... 111 1e-23
emb|CAA68075.1| (X99740) oligopeptide transport system permease ... 111 2e-23
gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC... 109 4e-23
gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana] 108 2e-22
pir||B72284 oligopeptide ABC transporter, permease protein - The... 107 3e-22
gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC... 106 5e-22
sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 105 1e-21
gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae] 105 1e-21
gi|10955048 ophC [Agrobacterium tumefaciens] >gi|7442467|pir||S7... 104 2e-21
gb|AAC67219.1| (U78968) transmembrane transport protein DppC [St... 103 3e-21
pir||A83389 probable permease of ABC transporter PA2060 [importe... 102 7e-21
pir||F82301 peptide ABC transporter, permease protein VC0618 [im... 101 2e-20
pir||F71957 ABC transporter, permease - Helicobacter pylori (str... 99 1e-19
pir||C64551 oligopeptide ABC transporter, permease protein - Hel... 98 1e-19
sp|P45287|SAPC_HAEIN PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S... 98 2e-19
pir||E83419 probable permease of ABC transporter PA1808 [importe... 97 4e-19
pir||T35940 probable transport permease protein - Streptomyces c... 96 5e-19
gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus] 92 8e-18
sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT... 92 1e-17
emb|CAC12448.1| (AL445067) oligopeptide transport system, permea... 89 9e-17
emb|CAC17496.1| (AL450432) putative transport system integral me... 87 3e-16
gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus sol... 85 1e-15
pir||C72393 oligopeptide ABC transporter, permease protein - The... 83 7e-15
pir||A72421 oligopeptide ABC transporter, permease protein - The... 80 5e-14
emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyo... 77 3e-13
pir||B82876 oligopeptide transport system permease protein UU561... 77 4e-13
gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonel... 75 2e-12
pir||D81253 probable peptide ABC-transport system permease prote... 69 7e-11
>pir||A75118 dipeptide abc transporter, permease protein (dppc) PAB1873 -
Pyrococcus abyssi (strain Orsay)
>gi|5458169|emb|CAB49658.1| (AJ248285) dipeptide ABC
transporter, permease protein (dppC) [Pyrococcus abyssi]
Length = 387
Score = 783 bits (2000), Expect = 0.0
Identities = 387/387 (100%), Positives = 387/387 (100%)
Query: 1 MQEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL 60
MQEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL
Sbjct: 1 MQEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL 60
Query: 61 FIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGA 120
FIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGA
Sbjct: 61 FIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGA 120
Query: 121 DHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLS 180
DHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLS
Sbjct: 121 DHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLS 180
Query: 181 FPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVW 240
FPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVW
Sbjct: 181 FPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVW 240
Query: 241 WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVL 300
WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVL
Sbjct: 241 WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVL 300
Query: 301 MEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRD 360
MEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRD
Sbjct: 301 MEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRD 360
Query: 361 ILDPKTRRSIEFKVKKQKKMEEGEESA 387
ILDPKTRRSIEFKVKKQKKMEEGEESA
Sbjct: 361 ILDPKTRRSIEFKVKKQKKMEEGEESA 387
>pir||E71014 probable dipeptide transport system permease protein dppC -
Pyrococcus horikoshii >gi|3257834|dbj|BAA30517.1|
(AP000006) 385aa long hypothetical dipeptide transport
system permease protein dppC [Pyrococcus horikoshii]
Length = 385
Score = 726 bits (1854), Expect = 0.0
Identities = 353/387 (91%), Positives = 371/387 (95%), Gaps = 2/387 (0%)
Query: 1 MQEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL 60
MQEEYKK+ILDK ADKLVYG+GKFI+LFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL
Sbjct: 1 MQEEYKKTILDKTADKLVYGLGKFISLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL 60
Query: 61 FIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGA 120
F+VIIFI +GIFGP+LAPWKYNFFPTLYTSHYD VYL PPGSKAVL++YNN I YPLG+
Sbjct: 61 FLVIIFIFLGIFGPYLAPWKYNFFPTLYTSHYDQVYLVPPGSKAVLDFYNNTVITYPLGS 120
Query: 121 DHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLS 180
DHYGRDLLSL+LQGARTSFVISIIVI GVPLGIILGL+AGYYGGK+DELIMR TDMFL+
Sbjct: 121 DHYGRDLLSLILQGARTSFVISIIVISLGVPLGIILGLIAGYYGGKIDELIMRTTDMFLA 180
Query: 181 FPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVW 240
FPALILAIAFSAVLPDRLQAFISSH +IEKIVLAIFALD REAGNLGRLLAVIVAMIIVW
Sbjct: 181 FPALILAIAFSAVLPDRLQAFISSHEIIEKIVLAIFALDQREAGNLGRLLAVIVAMIIVW 240
Query: 241 WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVL 300
WPGYARITRGSTLTEREKLYVEAARA+GLPTRTILF+HILPNIIGPILVYITLDFGGVVL
Sbjct: 241 WPGYARITRGSTLTEREKLYVEAARAVGLPTRTILFKHILPNIIGPILVYITLDFGGVVL 300
Query: 301 MEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRD 360
MEAGLSFLGLGA PPIADWGRIVYDGAQYFPRCWWLVFYPGL+VLLTALGWNLLGDGLRD
Sbjct: 301 MEAGLSFLGLGAVPPIADWGRIVYDGAQYFPRCWWLVFYPGLIVLLTALGWNLLGDGLRD 360
Query: 361 ILDPKTRRSIEFKVKKQKKMEEGEESA 387
ILDP+TRRSIEFKVKK KK EGEESA
Sbjct: 361 ILDPRTRRSIEFKVKKGKK--EGEESA 385
>pir||C72617 probable dipeptide transport system permease protein APE1396 -
Aeropyrum pernix (strain K1) >gi|5105079|dbj|BAA80393.1|
(AP000061) 387aa long hypothetical dipeptide transport
system permease protein [Aeropyrum pernix]
Length = 387
Score = 433 bits (1102), Expect = e-120
Identities = 211/384 (54%), Positives = 282/384 (72%), Gaps = 12/384 (3%)
Query: 2 QEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGLF 61
+E Y+K +LD++AD +V G+ I L + W ++N++R++E +L LYALNRSP L+G+
Sbjct: 4 EEVYEKKLLDRVADAIVDGLAALINLVRPGWADRNKARMDELKLTLYALNRSPIGLLGVA 63
Query: 62 IVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNA--------- 112
+VI F+++ + GP++AP YN + +D V LAPPG+ V+E ++
Sbjct: 64 LVIAFVIIAVIGPYIAPLGYNDQLVYCVTDFDAVRLAPPGT--VVEVAEDSICTQLGIEP 121
Query: 113 -TIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
T LGAD YGRDLLS +L GARTSF++ I+V+ G +GI+LGL +GY GG VDE+I
Sbjct: 122 GTYKLWLGADEYGRDLLSRILYGARTSFIVVILVMAVGPWIGILLGLFSGYRGGVVDEVI 181
Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
MR+ D+FL+FP LILAIA SAVLP RL I ++ ++ +L +FAL +A + RL+
Sbjct: 182 MRVVDVFLAFPGLILAIALSAVLPSRLDPIIINNELLLGTLLRLFALKPEDALPMVRLVV 241
Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
V++A+ IVWWP YAR+ RG L+ RE YVEAARA+G+PT +IL HILPNI+GP+LVY+
Sbjct: 242 VVIALWIVWWPVYARLVRGMVLSARENTYVEAARALGIPTHSILLGHILPNILGPVLVYL 301
Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
TLDFG V+L+EAGLSFLGLGA PPIADWGRI+YDGAQY+P WWLVF+PGL +L T LG+
Sbjct: 302 TLDFGAVILVEAGLSFLGLGAVPPIADWGRIIYDGAQYYPNAWWLVFFPGLAILFTVLGF 361
Query: 352 NLLGDGLRDILDPKTRRSIEFKVK 375
NLLGD LRDI+DP+TRR IEFKVK
Sbjct: 362 NLLGDALRDIMDPRTRRRIEFKVK 385
>pir||E72720 probable oligopeptide transport system permease protein oppC
APE0302 - Aeropyrum pernix (strain K1)
>gi|5103941|dbj|BAA79257.1| (AP000059) 308aa long
hypothetical oligopeptide transport system permease
protein oppC [Aeropyrum pernix]
Length = 308
Score = 219 bits (552), Expect = 5e-56
Identities = 126/336 (37%), Positives = 190/336 (56%), Gaps = 50/336 (14%)
Query: 37 RSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNF---FPTLYTSHYD 93
+S E++ ++ L +P + +GL I+ FIL+ + P LAP Y P +Y+S
Sbjct: 14 KSLYEKFESLILELYSNPLSRMGLIIITGFILIAVAAPLLAPPNYPDPYKIPKVYSSEP- 72
Query: 94 NVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLG 153
PP SK + YY + +YG ++ G R S IS+IV+ V +G
Sbjct: 73 ----LPPSSKHPFGT-SGPPGYYDI---YYG------VIWGTRISLRISLIVVGVAVAIG 118
Query: 154 IILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVL 213
+++G ++ Y+GG +D ++MR+T++FLS P LILA+A ++++ LQ
Sbjct: 119 VVVGSISAYFGGIIDNILMRITEVFLSLPGLILAMAIASMMERSLQN------------- 165
Query: 214 AIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRT 273
+I+A+I VWWP YARI R L + + YVEAA+ +GL T
Sbjct: 166 ------------------MILALIAVWWPAYARIVRAEVLRVKNEPYVEAAKILGLNTYR 207
Query: 274 ILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPR- 332
I+ RHILPN I +LV ++D G VVL+ +GL FLGLGA P A+WG ++ +G + +
Sbjct: 208 IIARHILPNSIYTVLVIASMDLGLVVLVASGLGFLGLGAQPGTAEWGIMISEGRNWLLQG 267
Query: 333 CWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
WW VF+PG+ + L LGW+LLGDGLRD+LDP+TR+
Sbjct: 268 AWWPVFFPGIAIFLWVLGWSLLGDGLRDVLDPRTRK 303
>pir||E75202 dipeptide abc transporter, dipeptide-binding protein PAB0093 -
Pyrococcus abyssi (strain Orsay)
>gi|5457577|emb|CAB49068.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 287
Score = 217 bits (547), Expect = 2e-55
Identities = 119/323 (36%), Positives = 175/323 (53%), Gaps = 50/323 (15%)
Query: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
W L ++ +IGL I+I ++LV IF PF+AP+ + H ++ L PP
Sbjct: 12 WHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPY------SPVEQHLED-RLKPPCE 64
Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
K Y G D +GRD+ S ++ G+R + V+ IIV + +G+ LGL++GY
Sbjct: 65 K------------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGY 112
Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
+GGKVDE+IMR D+ +FPALILA+A A+L L
Sbjct: 113 FGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGL------------------------ 148
Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
+ ++A+ +V W YAR+ R TL+ +E+L++EAARAIG ILF +ILPN
Sbjct: 149 -------INAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPN 201
Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
++ ILV IT + ++ + LSFLGLGA PP DWG ++ Y R W +PGL
Sbjct: 202 VMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGL 261
Query: 343 VVLLTALGWNLLGDGLRDILDPK 365
++ LG+N +GDGLRD + P+
Sbjct: 262 AIMTLVLGFNFVGDGLRDAIQPE 284
>pir||E75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458682|gb|AAF10533.1|AE001948_2
(AE001948) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 332
Score = 206 bits (519), Expect = 3e-52
Identities = 116/326 (35%), Positives = 183/326 (55%), Gaps = 29/326 (8%)
Query: 52 RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLE---- 107
RS P +G IV +F+L+ + P L P+ PT T + L PP A+ +
Sbjct: 23 RSTPGKVGAIIVALFVLLALLAPVLRPYD----PT--TDRNYRLNLKPPSITALWDAGAK 76
Query: 108 --YYNNATIYY-----PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVA 160
Y + AT P G D+ GRD+ + +L G R S + ++ + + +G +LG++A
Sbjct: 77 ETYTDPATGKVNLWAAPFGTDNLGRDIYARVLHGTRISLKVGVVSTLLALVIGTLLGVMA 136
Query: 161 GYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDV 220
G++GG D ++ LTD+ L+FP+++LAI F+ + F S HP L I LD
Sbjct: 137 GFFGGWFDSVMGYLTDVLLAFPSILLAIGFATI-------FSSDHPP-----LLIKGLDR 184
Query: 221 REAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHIL 280
A N +L+ ++A+ +V P Y R+ R L+ RE+ +V+AA A+G ++F+H+L
Sbjct: 185 LFALNSPQLVTAMLAVSLVQIPVYMRLARSVVLSIREREFVQAAGALGASQWRMVFKHVL 244
Query: 281 PNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYP 340
PN + P++V L + A L FLG+GA PP+ +WG ++ D QY+ W + +P
Sbjct: 245 PNSLSPLIVQGALSIATATIEVAALGFLGIGAQPPLPEWGTMISDSRQYYVDAPWTMIFP 304
Query: 341 GLVVLLTALGWNLLGDGLRDILDPKT 366
GL + LT LG+NLLGDGLRD+LDP++
Sbjct: 305 GLAIFLTVLGFNLLGDGLRDVLDPRS 330
>sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|1073368|pir||S47764 dipeptide transport system
permease protein dppC - Escherichia coli
>gi|349227|gb|AAA23704.1| (L08399) transmembrane protein
[Escherichia coli] >gi|466681|gb|AAB18520.1| (U00039)
dppC [Escherichia coli] >gi|1789964|gb|AAC76567.1|
(AE000431) dipeptide transport system permease protein 2
[Escherichia coli K12]
Length = 300
Score = 206 bits (518), Expect = 5e-52
Identities = 111/317 (35%), Positives = 174/317 (54%), Gaps = 44/317 (13%)
Query: 52 RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
R+ A++GL V+I + + IF ++AP+ + + LAPP +
Sbjct: 28 RNKGAVVGLVYVVIVLFIAIFANWIAPYNP-------AEQFRDALLAPPA------WQEG 74
Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
++ + LG D GRD+LS L+ GAR S ++ +V++ + +G+ILGL+AGY+GG VD +I
Sbjct: 75 GSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNII 134
Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
MR+ D+ L+ P+L+LA+ +++AIF + A
Sbjct: 135 MRVVDIMLALPSLLLAL----------------------VLVAIFGPSIGNAA------- 165
Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
+A+ V P Y R+TR + L E + YV A+R G +F +I PN + P++V
Sbjct: 166 --LALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQA 223
Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
+L F +L A L FLG+GA PP +WG ++ D Q+ WW+V +PGL +LLT L +
Sbjct: 224 SLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAF 283
Query: 352 NLLGDGLRDILDPKTRR 368
NL+GDGLRD LDPK ++
Sbjct: 284 NLMGDGLRDALDPKLKQ 300
>dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 305
Score = 204 bits (513), Expect = 2e-51
Identities = 112/318 (35%), Positives = 169/318 (52%), Gaps = 48/318 (15%)
Query: 50 LNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDN--VYLAPPGSKAVLE 107
L RS +GL IV++ +L+ F LAP + H N + L PP
Sbjct: 29 LIRSKTGTVGLIIVLVVLLLAAFADVLAP---------HNPHEVNPAMMLKPPA------ 73
Query: 108 YYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
+ + + + LG DH GRD+ S ++ G+R S ++ + ++ +G+ +G+VAG+YGG +
Sbjct: 74 WLDGGSSEHFLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGFYGGWL 133
Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
D MRL D FLS P ++LA+ ++L++F V
Sbjct: 134 DTAFMRLVDSFLSIPNILLAL----------------------VILSVFGPGV------- 164
Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
+I + + W YAR+ RG L+ +E+ +V+AARAIG+ R ++ RH+LPN++ P
Sbjct: 165 --WTLIFVLGVTNWVNYARLVRGEVLSIKEREFVKAARAIGVKNRMVMVRHLLPNVVSPF 222
Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
+V TL +++EA LSFLGLG PP WG I+ DG Y WWL +PGL + LT
Sbjct: 223 IVISTLSVATTIILEASLSFLGLGIQPPDISWGGILSDGRDYIATSWWLATFPGLAITLT 282
Query: 348 ALGWNLLGDGLRDILDPK 365
LG LGD LRD+LDP+
Sbjct: 283 VLGIIFLGDWLRDVLDPR 300
>dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 301
Score = 203 bits (511), Expect = 3e-51
Identities = 109/329 (33%), Positives = 176/329 (53%), Gaps = 50/329 (15%)
Query: 39 RLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLA 98
R++ W+ L ++ A++GL ++I FI+V + GP+ +T+H
Sbjct: 22 RIQSWKNFYKKLAKNKAAMVGLSLIIFFIVVALIGPY------------FTTH------- 62
Query: 99 PPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGL 158
P V+ + + G DH+GRD+ + ++ G + + ++ G +G+ILG+
Sbjct: 63 DPYEPNVMNKLAEPSAEHWFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILGV 122
Query: 159 VAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFAL 218
V+GYYG VD +IMR+ D+ L+FP ++LA+A ++L
Sbjct: 123 VSGYYGRLVDTVIMRIMDVLLAFPGILLALAIISILG----------------------- 159
Query: 219 DVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRH 278
G + VI+A+ I P +ARI RGSTL R+ Y++A +A+G I+F+H
Sbjct: 160 --------GSINNVIIAVGIFSIPVFARIVRGSTLAVRKLEYIDAVKALGASDARIIFKH 211
Query: 279 ILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVF 338
ILPN++ PI+V TL +L + LSFLGLGA PPI +WG ++ DG Y +
Sbjct: 212 ILPNVLSPIIVQGTLSIATSILTASALSFLGLGAQPPIPEWGAMLSDGRNYMYDAPHVAL 271
Query: 339 YPGLVVLLTALGWNLLGDGLRDILDPKTR 367
+PGL +++ L +N+ GDGLRD LDPK++
Sbjct: 272 FPGLAIVVVVLAFNIFGDGLRDALDPKSK 300
>pir||E72371 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981013|gb|AAD35587.1|AE001726_21 (AE001726)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 313
Score = 199 bits (502), Expect = 3e-50
Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 47/342 (13%)
Query: 41 EEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFF------PTLYTSHYDN 94
+E++ ++ R P A+IG +V+ F+++ I P +AP + P L N
Sbjct: 3 QEFKRIMKRFFRDPSAIIGFSLVLFFVVIAILAPVIAPPIHPLTRAKLPDPYLMPVVSWN 62
Query: 95 VYLAPPGSK--AVLEYYNNATI----YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMF 148
PP +K A+ + N I Y+P G GRD+L ++ G RT+F I +IV +
Sbjct: 63 QSPQPPTTKEDALAKNPNREPIRCVDYHPFGVIG-GRDILYGIVWGTRTAFKIGLIVTLA 121
Query: 149 GVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVI 208
+ +G+ +G ++GY+GG +DE++MR+TD+FLS P LI A+ + VL L
Sbjct: 122 RLLIGVFIGSISGYFGGWIDEVLMRITDIFLSIPFLIAAVVLTTVLGTGLDK-------- 173
Query: 209 EKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIG 268
V++AMI+ W G AR+ RG+ L RE+ +V AA+AIG
Sbjct: 174 -----------------------VMIAMIVFGWMGAARLIRGNILQVREEQFVLAAKAIG 210
Query: 269 LPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV---YD 325
+P I+ +H+LPN I P+L++ +++ G +V+ A LSFLGLGA ADWG I+ D
Sbjct: 211 VPDFLIILKHVLPNTIFPVLIWASMNMGSLVITAAVLSFLGLGAPQGYADWGSILSYSRD 270
Query: 326 GAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
+ W+ + YPG ++L LGWNLLGD LRD DP+ +
Sbjct: 271 WMMEIGKHWYALVYPGTAMVLFVLGWNLLGDALRDAFDPRLK 312
>pir||T34756 oligopeptide transport integral membrane protein - Streptomyces
coelicolor >gi|3402243|emb|CAA20179.1| (AL031184)
oligopeptide transport integral membrane protein
[Streptomyces coelicolor A3(2)]
Length = 335
Score = 197 bits (495), Expect = 2e-49
Identities = 116/333 (34%), Positives = 172/333 (50%), Gaps = 42/333 (12%)
Query: 44 RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHY-DNVYLAPPGS 102
R+ L R AL G +V++ I+V +F P + Y P Y D ++ P GS
Sbjct: 37 RIAWERLKRDKLALAGGIVVLVLIVVAVFAPLITSL-YGQDPNAYNEDMIDPLFGTPTGS 95
Query: 103 KAVLEYYNNATIYYPLGADHY-------GRDLLSLLLQGARTSFVISIIVIMFGVPLGII 155
LG +H+ GRD+ + ++ GAR S ++ + M V LG +
Sbjct: 96 LG------------GLGGEHWLGVEPVNGRDIFARIVHGARISLLVGFLSAMVAVVLGTV 143
Query: 156 LGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAI 215
LG++AG++GG VD LI R+ D L+FP L+ IA +V+PD +
Sbjct: 144 LGVLAGFFGGWVDSLICRIMDGLLAFPQLLFIIALVSVMPDNMLGL-------------- 189
Query: 216 FALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTIL 275
+G RLL +IV + WP R+ RG TL+ RE+ YVEAAR++G IL
Sbjct: 190 -------SGTGVRLLMMIVVIGFFGWPYIGRVVRGQTLSMREREYVEAARSLGAGRFYIL 242
Query: 276 FRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW 335
F+ +LPN++ PI+VY T+ +L EA LSFLG+G PP + WG+++ Y+
Sbjct: 243 FKELLPNLVAPIIVYTTMMIPTNILTEAALSFLGVGVKPPTSSWGQMLSSAIDYYKSDPM 302
Query: 336 LVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
+ PG+ + +T L +NL GDG+RD LDPK R
Sbjct: 303 YMVVPGVAIFITVLAFNLFGDGVRDALDPKGSR 335
>sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC
>gi|2126890|pir||I40547 oligopeptide ABC transporter
(permease) appC - Bacillus subtilis
>gi|677947|gb|AAA62360.1| (U20909) AppC [Bacillus
subtilis] >gi|2633494|emb|CAB12997.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 303
Score = 196 bits (492), Expect = 5e-49
Identities = 112/337 (33%), Positives = 175/337 (51%), Gaps = 54/337 (16%)
Query: 33 MEKNRSRLEEWRLMLY--ALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTS 90
+++N S+ E ++ +++ A++G I+ I I+ +F P +AP+
Sbjct: 14 LKENISKKPETMTKIFWEKFSKNKLAILGAVILFIIIMSAVFAPLIAPY----------- 62
Query: 91 HYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGV 150
P +++L+ Y + + +G D +GRD+ S +L GAR S ++ ++ +
Sbjct: 63 --------PQEQQSLLDKYKAPGLEHLMGTDKFGRDIFSRILYGARVSLLVGFASVVGSI 114
Query: 151 PLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEK 210
+G +LG +AGY+ G VD +IMR+ D+ LS P + L I + P ++K
Sbjct: 115 LIGTVLGALAGYFRGIVDAVIMRVVDIVLSIPDIFLLITLVTIFK----------PGVDK 164
Query: 211 IVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLP 270
++L IF L W AR+ RG L+ R + YV AA+ IG
Sbjct: 165 LIL-IFCL--------------------TGWTTTARLVRGEFLSLRSREYVLAAKTIGTK 203
Query: 271 TRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQY- 329
T I+F HILPN +GPI+V TL G V+L E+ LS+LG G PPIA WG ++ D +
Sbjct: 204 THKIIFSHILPNALGPIIVSATLKVGSVILAESALSYLGFGIQPPIASWGNMLQDAQNFT 263
Query: 330 -FPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPK 365
+ WW +PGL +L+T L +N +GDGLRD LDPK
Sbjct: 264 VMIQAWWYPLFPGLFILMTVLCFNFVGDGLRDALDPK 300
>pir||D83082 probable permease of ABC transporter PA4504 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950744|gb|AAG07892.1|AE004864_4 (AE004864) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 303
Score = 195 bits (491), Expect = 7e-49
Identities = 109/321 (33%), Positives = 165/321 (50%), Gaps = 44/321 (13%)
Query: 49 ALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEY 108
A R+ A+ GL +++ + +F P++AP+ + + + L PP +
Sbjct: 26 AFTRNKGAVGGLLFMLLIVFCALFAPWVAPYDPS-------EQFRDFLLTPPS------W 72
Query: 109 YNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVD 168
+ LG D GRDLLS L+ GAR S +I + ++ + GI+LGL+AG+ +
Sbjct: 73 LEGGQARFLLGTDELGRDLLSRLIHGARLSLLIGLSSVVISLVPGILLGLLAGFSPNRAG 132
Query: 169 ELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGR 228
LIMRL D+ L+ P+L+LA+A A+L L
Sbjct: 133 PLIMRLMDIMLALPSLLLAVAIVAILGPGL------------------------------ 162
Query: 229 LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPIL 288
+ ++A+ IV P Y R+TR + +TE + YV A+R G T ++F +LPN + P++
Sbjct: 163 -INTVIAIAIVSLPAYVRLTRAAVMTELNRDYVTASRLAGAGTLRLMFVCVLPNCMAPLI 221
Query: 289 VYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTA 348
V TL F +L A L FLGLG PP +WG ++ Y R WW+V PGL +LL+
Sbjct: 222 VQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSV 281
Query: 349 LGWNLLGDGLRDILDPKTRRS 369
L NL+GDGLRD LDPK + +
Sbjct: 282 LAINLMGDGLRDALDPKLKNA 302
>pir||D64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
(strain 26695) >gi|2313398|gb|AAD07369.1| (AE000548)
dipeptide ABC transporter, permease protein (dppC)
[Helicobacter pylori 26695]
Length = 285
Score = 194 bits (488), Expect = 2e-48
Identities = 114/326 (34%), Positives = 173/326 (52%), Gaps = 44/326 (13%)
Query: 40 LEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAP 99
+E +R + ++ A++G +IV++ ++ IF P LAP Y + + L P
Sbjct: 1 MESFREFIQQFKKNKAAVVGAWIVLLLVICAIFAPLLAPHDP------YVQNAQDRLLKP 54
Query: 100 PGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
+ E+ NA Y LG D GRD+LS L+ GAR S I I+ + V G ILGL+
Sbjct: 55 -----IWEHGGNAK--YLLGTDDLGRDILSRLIYGARISLTIGIVSMGIAVFFGTILGLI 107
Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
AGY+GGK D +IMR+ D+ + P+++L + AVL P + +LAI +
Sbjct: 108 AGYFGGKTDAIIMRIMDIMFALPSILLIVIVVAVLG----------PSLTNAMLAIGFVG 157
Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
+ PG+AR+ R S L E+EK YV A++ G ++ + I
Sbjct: 158 I---------------------PGFARLVRSSVLGEKEKEYVIASKINGSSHLRLMCKVI 196
Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFY 339
PN I P++V T+ F VL A LSFLGLGA PP +WG ++ + QY W++ +
Sbjct: 197 FPNCIIPLIVQTTMGFASTVLEAAALSFLGLGAQPPKPEWGAMLMNSMQYIATAPWMLVF 256
Query: 340 PGLVVLLTALGWNLLGDGLRDILDPK 365
PG+++ LT + +NL+GDG+ D LDPK
Sbjct: 257 PGVMIFLTVMSFNLVGDGIMDALDPK 282
>sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|11277274|pir||T44637 dipeptide transport protein
dppC [imported] - Bacillus firmus
>gi|1813497|gb|AAB41690.1| (U64514) dipeptide
transporter protein dppC [Bacillus firmus]
Length = 304
Score = 193 bits (486), Expect = 3e-48
Identities = 110/334 (32%), Positives = 169/334 (49%), Gaps = 50/334 (14%)
Query: 34 EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYD 93
E + + WR L ++ A++GL I+ FIL+ IF P L + Y
Sbjct: 20 EDQYTAVSPWREAFKQLKKNKLAIVGLIIITSFILIAIFAPLLTS-------SSYAETNP 72
Query: 94 NVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLG 153
+ L P ++ + G D +GRD+ + ++ GAR S + + + G
Sbjct: 73 SNRLQGPSAE------------HWFGTDDFGRDIFTRIVYGARLSLQVGFFAVTGALIFG 120
Query: 154 IILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVL 213
LGL+AGYYG +D LI R+ D+ L+FP+++LAIA A+L LQ
Sbjct: 121 TTLGLIAGYYGRWIDMLISRIFDIMLAFPSILLAIAIVAILGPSLQN------------- 167
Query: 214 AIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRT 273
++A+ IV P + R+ R ++ RE+ ++ AA+A G+
Sbjct: 168 ------------------ALIAIAIVNVPIFGRLVRSKVISLREEEFIMAAKAQGMKNGR 209
Query: 274 ILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRC 333
I+F HILPN + PI+V TL FG +L A L FLGLGA P+ +WG+++ D Q+
Sbjct: 210 IIFHHILPNSLAPIIVQATLGFGTAILEAAALGFLGLGAQAPMPEWGKMLSDSRQFIQSA 269
Query: 334 WWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
W V +PG ++L LG+N++GDGLRD LDPK +
Sbjct: 270 PWTVLFPGFSIMLVVLGFNMIGDGLRDALDPKMK 303
>pir||C82356 peptide ABC transporter, permease protein VC0173 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654576|gb|AAF93349.1| (AE004107) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 312
Score = 193 bits (485), Expect = 3e-48
Identities = 112/321 (34%), Positives = 165/321 (50%), Gaps = 34/321 (10%)
Query: 47 LYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVL 106
LY R A+ + ++F++V I P +AP T+ YD + ++
Sbjct: 20 LYYFLRDKVAMSSFAVFVLFVIVAISAPLIAP----------TNPYDLSSIDIMDAELPP 69
Query: 107 EYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGK 166
+ ++ LG D GRD+ S +L G+R S I + + + LGI++GL AGY+GG+
Sbjct: 70 SWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGR 129
Query: 167 VDELIMRLTDMFLSFPALILAIAFSAVLPDRLQA-FISSHPVIEKIVLAIFALDVREAGN 225
+D +MR D+ LSF +++AI SA+ F S + V+
Sbjct: 130 IDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVV----------------- 172
Query: 226 LGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIG 285
+L VI+ + WP YAR R S L E++K YVEAAR +G I+FRHILPN +
Sbjct: 173 ---MLVVIIG--VAEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLS 227
Query: 286 PILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQY-FPRCWWLVFYPGLVV 344
PILV T+ ++ EA LSFLGLG G ++ G Y F WW+ +PG+V+
Sbjct: 228 PILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVL 287
Query: 345 LLTALGWNLLGDGLRDILDPK 365
+L L NLLGD LRD+ +PK
Sbjct: 288 VLLVLVINLLGDWLRDVFNPK 308
>pir||D71130 probable oligopeptide transport permease protein APPC - Pyrococcus
horikoshii >gi|3257219|dbj|BAA29902.1| (AP000003) 283aa
long hypothetical oligopeptide transport permease
protein APPC [Pyrococcus horikoshii]
Length = 283
Score = 189 bits (474), Expect = 7e-47
Identities = 102/317 (32%), Positives = 168/317 (52%), Gaps = 58/317 (18%)
Query: 57 LIGLFIVIIFILVGIFGPFLA---PWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNAT 113
LIGL ++++ +++ + P L P +F P L PP
Sbjct: 19 LIGLILLLVLVVIALITPLLPLPDPQSTDFQPFL-----------PPSKD---------- 57
Query: 114 IYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMR 173
+P+G D+ GRD+ S +L G RTS ++ ++ +G+++G VAGYYGG +D+++ R
Sbjct: 58 --HPMGTDNLGRDIFSRVLWGTRTSLLVGLVAAGLSAIIGVLVGGVAGYYGGTIDDILSR 115
Query: 174 LTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVI 233
+T++FL P LA+ +V++IF LL ++
Sbjct: 116 ITEIFLVIPGFFLAL----------------------LVVSIFG---------SSLLNIM 144
Query: 234 VAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITL 293
+ + ++ WP AR+ R L+ +E+ +++A R G+ I+ RHI+PN I PI+ L
Sbjct: 145 IVLGLLIWPSNARLMRAQALSLKEREFIQALRVAGVSDLRIVLRHIIPNGIQPIIANTFL 204
Query: 294 DFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNL 353
G ++ EAGLSF+GLG P + WG+++Y+G Y WW+ +PG+ ++LT L NL
Sbjct: 205 QMAGAIITEAGLSFIGLG-DPNVVSWGKMIYEGQIYITTYWWVPIFPGVFLVLTVLALNL 263
Query: 354 LGDGLRDILDPKTRRSI 370
LGDGL +L+PK RR+I
Sbjct: 264 LGDGLLTLLNPKLRRAI 280
>sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLID
>gi|7442415|pir||H64820 probable oligopeptide transport
protein b0832 - Escherichia coli
>gi|1787054|gb|AAC73919.1| (AE000185) putative transport
system permease protein [Escherichia coli K12]
>gi|4062409|dbj|BAA35527.1| (D90721) Transmembrane
protein dppC [Escherichia coli]
>gi|4062417|dbj|BAA35535.1| (D90722) Transmembrane
protein dppC [Escherichia coli]
Length = 303
Score = 187 bits (469), Expect = 3e-46
Identities = 111/326 (34%), Positives = 165/326 (50%), Gaps = 51/326 (15%)
Query: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKY-NFFPTLYTSHYDNVYLAPPG 101
W R A+ VI+ I+V IF ++AP+ N+F YDN+
Sbjct: 27 WHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFD------YDNLN----- 75
Query: 102 SKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAG 161
N ++ + G D GRD+ S +L GA+ S + + G +G +LGL+AG
Sbjct: 76 --------NGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAG 127
Query: 162 YYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVR 221
YY G D LIMR+ D+ +FP ++LAIA AVL + I I +AIF++
Sbjct: 128 YYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVI--------IAVAIFSI--- 176
Query: 222 EAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILP 281
P +AR+ RG+TL +++ ++E+AR+IG T+L RHILP
Sbjct: 177 --------------------PAFARLVRGNTLVLKQQTFIESARSIGASDMTVLLRHILP 216
Query: 282 NIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPG 341
+ I+V+ T+ G ++ A LSFLGLGA PP +WG ++ + + +P
Sbjct: 217 GTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA 276
Query: 342 LVVLLTALGWNLLGDGLRDILDPKTR 367
L + LT L +NLLGDGLRD LDPK +
Sbjct: 277 LAIFLTVLAFNLLGDGLRDALDPKIK 302
>gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T45538 moaC
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665714|gb|AAB88474.1| (AF242881) moaC
[Agrobacterium tumefaciens]
Length = 293
Score = 185 bits (464), Expect = 1e-45
Identities = 104/318 (32%), Positives = 167/318 (51%), Gaps = 50/318 (15%)
Query: 50 LNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYY 109
L +P IG+ I+ + ++ + P L+ F+P + +D L+PP +
Sbjct: 23 LRMNPSMWIGVIIIAVLLVAAVLAPQLS-----FYPPAKQNLFDQ--LSPPSAD------ 69
Query: 110 NNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDE 169
Y LGAD YGRD+L+ LL GAR S +I + ++ + +G ++G++AG+ GGK+D
Sbjct: 70 ------YLLGADQYGRDILTRLLYGARYSLLIGSLAVVIAMVIGTLIGMMAGFRGGKIDI 123
Query: 170 LIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRL 229
++M++ D+ L+FP+LIL IA A++ +
Sbjct: 124 VLMQIMDVILAFPSLILGIALVALMG-------------------------------ATM 152
Query: 230 LAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILV 289
+I A+ P +AR+ R + LT+R++ YV+A A+G LFRHILP I+ ++V
Sbjct: 153 TNIIAAIAFTSVPAFARVARAAVLTQRDREYVQACSAMGFSGSRTLFRHILPAILPEVMV 212
Query: 290 YITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTAL 349
+L V EA L+F+GLG PP WG +V DG +L +P L +LL L
Sbjct: 213 LASLWMANAVRTEASLAFVGLGIAPPAPTWGGMVRDGFTVILSSPYLAIFPSLAILLLVL 272
Query: 350 GWNLLGDGLRDILDPKTR 367
+NL+GDGLRD++DP+ +
Sbjct: 273 AFNLIGDGLRDLIDPRMK 290
>gi|10954944 Probable accE [Agrobacterium tumefaciens]
>gi|6498297|dbj|BAA87749.1| (AB016260) Probable accE
[Agrobacterium tumefaciens]
Length = 286
Score = 184 bits (462), Expect = 2e-45
Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 48/324 (14%)
Query: 44 RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSK 103
R L + R P I +++ +I+I V +F A W P Y APPG+
Sbjct: 11 RQFLKSARRIP---ISIWLCLIWIAVVVFVGITAQW---LAPFDYLQQSPLARFAPPGAP 64
Query: 104 AVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYY 163
L LG D+ GRD+LS +L +TS +I+++ + +G LG +A ++
Sbjct: 65 GHL-----------LGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHF 113
Query: 164 GGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREA 223
GG VD LIM D S P +I A+ + AF+ S P+I +++ + + +
Sbjct: 114 GGWVDNLIMGFADAKASVPFIIFALG--------VLAFLGSSPLILLMLVGVASFE---- 161
Query: 224 GNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNI 283
YAR+TRG L+ ++ Y EAAR +G+P+ I RH+LPNI
Sbjct: 162 -------------------RYARLTRGLVLSANQEGYAEAARIVGVPSLRIYVRHVLPNI 202
Query: 284 IGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLV 343
GP++V ITL+F ++L+E+GLSFLGLG PP G +V DG Y WWL+ PG+V
Sbjct: 203 AGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVADGRNYIAIAWWLIALPGVV 262
Query: 344 VLLTALGWNLLGDGLRDILDPKTR 367
++LT L +LLGD LRD D + R
Sbjct: 263 IVLTTLSISLLGDYLRDRFDARLR 286
>dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 306
Score = 184 bits (462), Expect = 2e-45
Identities = 106/328 (32%), Positives = 163/328 (49%), Gaps = 50/328 (15%)
Query: 40 LEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAP 99
+ WR L ++ A+ G+ IV F+ + +F P L T +D A
Sbjct: 28 ISPWRDAFRQLRKNKLAMTGIVIVCFFLFIALFAPLLT-----------THSFDGYDAAS 76
Query: 100 PGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
E++ G D GRD+ + + GA+ S + + + +G +LG++
Sbjct: 77 RLQSPSAEHW--------FGTDDLGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLGVL 128
Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
AGYYG +D LI R+ D+ L+FP+++LAIA A+L L
Sbjct: 129 AGYYGRWLDMLISRIFDIMLAFPSILLAIAIVAILGPSLHN------------------- 169
Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
+VA+ IV P + R+ R ++ R + ++ AARA G+ ILF HI
Sbjct: 170 ------------AMVAIAIVNIPIFGRLVRSKVISLRAEEFIMAARAQGMKNSRILFHHI 217
Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFY 339
LPN + PI+V TL FG +L A L FLGLGA P+A+WG+++ D Y W+ +
Sbjct: 218 LPNSLSPIIVQATLGFGTAILEAAALGFLGLGAQAPLAEWGKMLADSRAYIQTAPWVAIF 277
Query: 340 PGLVVLLTALGWNLLGDGLRDILDPKTR 367
PG+ ++L LG+N++GDGLRD LDPK +
Sbjct: 278 PGMSIMLVVLGFNMIGDGLRDALDPKMK 305
>pir||T03434 probable transport protein accE - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153181|gb|AAC17201.1| (AF010180) AccE
[Agrobacterium tumefaciens]
Length = 286
Score = 183 bits (461), Expect = 2e-45
Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 48/324 (14%)
Query: 44 RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSK 103
R L + R P I +++ +I+I V +F A W P Y APPG+
Sbjct: 11 RQFLKSARRIP---ISIWLCLIWIAVVVFVDITAQW---LAPFDYLQQSPLARFAPPGAP 64
Query: 104 AVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYY 163
L LG D+ GRD+LS +L +TS +I+++ + +G LG +A ++
Sbjct: 65 GHL-----------LGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHF 113
Query: 164 GGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREA 223
GG VD LIM D S P +I A+ + AF+ S P+I
Sbjct: 114 GGWVDNLIMGFADAKASVPFIIFALG--------VLAFLGSSPLI--------------- 150
Query: 224 GNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNI 283
+++ + + + YAR+TRG L+ ++ Y EAAR +G+P+ I RH+LPNI
Sbjct: 151 --------LLMRVGVASFERYARLTRGLVLSANQEGYAEAARIVGVPSLRIYVRHVLPNI 202
Query: 284 IGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLV 343
GP++V ITL+F ++L+E+GLSFLGLG PP G +V DG Y WWL+ PG+V
Sbjct: 203 AGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVADGRNYIAIAWWLIALPGVV 262
Query: 344 VLLTALGWNLLGDGLRDILDPKTR 367
++LT L +LLGD LRD D + R
Sbjct: 263 IVLTTLSISLLGDYLRDRFDARLR 286
>gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-3) [Sulfolobus
solfataricus]
Length = 298
Score = 181 bits (455), Expect = 1e-44
Identities = 108/325 (33%), Positives = 159/325 (48%), Gaps = 46/325 (14%)
Query: 44 RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSK 103
R ML AL R L+GL IV +F++ + L + Y L P
Sbjct: 8 RFMLKALIRDKAGLLGLIIVSLFLIWSLIQGIL-----EILSSYLRKQYLGYILLPHNPF 62
Query: 104 AVLEYYNNATIYYP------LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILG 157
YN ++P LG + G D+LS +L ++I+V+ + +G ILG
Sbjct: 63 Q----YNLQLAFHPPSSTFLLGTNAEGEDILSRILYALPRDAFVAIVVVFSAIIIGGILG 118
Query: 158 LVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFA 217
++AGY GG VDE++MR+TD FLS PALIL IA + L
Sbjct: 119 ILAGYLGGIVDEILMRVTDAFLSLPALILVIAITVPLK---------------------- 156
Query: 218 LDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFR 277
A I+ + +VWWP YAR R TL + Y+ AA+ + ++ +R
Sbjct: 157 ---------ATFFATILGLAVVWWPTYARFYRAQTLRIKNMDYISAAKLSNVSRISLFYR 207
Query: 278 HILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLV 337
+I N I P+L Y LDFG V+L + L+FLG+G TPPI + G + +G P+ WW
Sbjct: 208 YIFLNAIDPVLAYAALDFGNVILTYSTLAFLGIGITPPIPELGEMAANGVTGLPQYWWWA 267
Query: 338 FYPGLVVLLTALGWNLLGDGLRDIL 362
+PGL +L+ +G+ LLGD L+D++
Sbjct: 268 LFPGLTILIIVVGFVLLGDRLQDVV 292
>emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter integral membrane
protein [Streptomyces coelicolor]
Length = 301
Score = 181 bits (454), Expect = 1e-44
Identities = 104/325 (32%), Positives = 164/325 (50%), Gaps = 46/325 (14%)
Query: 45 LMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKA 104
++L L R+ A++ L ++++ +L +F P +AP+ N L + L PP
Sbjct: 21 VVLRGLLRNKLAVLALAVLVLLLLAALFAPLIAPYDPNAQNLL-------LRLRPPA--- 70
Query: 105 VLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYG 164
+ + + + LG D GRD+LS ++ G R S ++ + +G ++GL +GY+G
Sbjct: 71 ---WQDGGSGAHLLGTDQLGRDMLSRVVHGTRVSLLVGAGAALLAGVIGTVVGLASGYFG 127
Query: 165 GKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAG 224
G D +MRL D+ L+FP+L+LA+A G
Sbjct: 128 GWADRTLMRLADVQLAFPSLLLALAV--------------------------------VG 155
Query: 225 NLGR-LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNI 283
LG L VIV + W YAR+ R ++ R + +V ARAIG+ TI+ RH+LPN+
Sbjct: 156 FLGSGLWVVIVVLGFTGWVSYARVVRSEVMSLRTRDFVTEARAIGVTDVTIMRRHLLPNV 215
Query: 284 IGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLV 343
+ P+ TL ++ EA LS+LGLG WG ++ DG Y WW+ +PG+
Sbjct: 216 MAPLATIGTLHVAAAIVAEASLSYLGLGVPKETVTWGGMLADGQLYLGTSWWVAVFPGIA 275
Query: 344 VLLTALGWNLLGDGLRDILDPKTRR 368
++LT+L N+ GD LRD+ DPK R
Sbjct: 276 LMLTSLAINITGDALRDVADPKAYR 300
>dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [Ochrobactrum
anthropi]
Length = 291
Score = 180 bits (453), Expect = 2e-44
Identities = 107/337 (31%), Positives = 168/337 (49%), Gaps = 64/337 (18%)
Query: 22 GKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKY 81
G+F++LF R+ + W SPP IG I+ + LV IF PF+AP+
Sbjct: 7 GRFLSLFSM-----LRNEVRSW---------SPPLKIGSAIMALLGLVAIFAPFIAPYDP 52
Query: 82 NFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVI 141
N+ ++ + L PP K + G D+ GRD+ S ++ GAR V+
Sbjct: 53 NY------QDFEAI-LVPPSLKHLF------------GTDNLGRDVFSRVVFGARIDLVV 93
Query: 142 SIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAF 201
++ + G+++G AGY GG+ D +MR+ D+ ++FP L+L + A+L
Sbjct: 94 GFLLTYVPMIYGVLIGAYAGYIGGRFDATLMRIIDVAMAFPFLVLIVVILAILG------ 147
Query: 202 ISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYV 261
P I+ I +AIF IV W YAR+ R + ER K Y+
Sbjct: 148 ----PGIQNIYIAIF---------------------IVAWTMYARLARAEMMVERTKDYM 182
Query: 262 EAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGR 321
AA+ +G P I+F H LPN+I +V+ T DF +++ +GLSF+GLG PP +WG
Sbjct: 183 VAAKVLGFPRSRIIFLHGLPNVINSSIVFSTSDFVLNIVLVSGLSFIGLGIQPPAPEWGS 242
Query: 322 IVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGL 358
++ +G + + WW+ PG ++LT + L+GDGL
Sbjct: 243 MIAEGRDFMRQAWWIAVLPGFAIVLTGMALVLIGDGL 279
>sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDQ
>gi|7442414|pir||H64901 probable oligopeptide transport
protein b1485 - Escherichia coli
>gi|1742425|dbj|BAA15140.1| (D90789) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1742436|dbj|BAA15150.1| (D90790) Dipeptide transport
system permease protein DppC. [Escherichia coli]
>gi|1787760|gb|AAC74558.1| (AE000245) putative transport
protein [Escherichia coli K12]
Length = 298
Score = 180 bits (451), Expect = 3e-44
Identities = 105/320 (32%), Positives = 160/320 (49%), Gaps = 50/320 (15%)
Query: 46 MLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAV 105
+++ L SP + I+++ +L+ IF P+LA N L PP +
Sbjct: 23 LVWMLKGSPLTVTSAVIIVLMLLMMIFSPWLATHDPNAIDL-------TARLLPPSAA-- 73
Query: 106 LEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGG 165
+ G D GRDL S +L G++ S + ++V+ +G +LG ++G GG
Sbjct: 74 ----------HWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGG 123
Query: 166 KVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGN 225
+ D +IMR+ D+ LS P+L+L +A +A L L
Sbjct: 124 RADAIIMRIMDIMLSIPSLVLTMALAAALGPSL--------------------------- 156
Query: 226 LGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIG 285
++A+ IV P Y R+ RG L R+ YV+AA+ G ++ HIL N +
Sbjct: 157 ----FNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLP 212
Query: 286 PILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVL 345
P++V +LD G +LM A L F+GLGA P A+WG +V +G Y WW +PG +L
Sbjct: 213 PLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAIL 272
Query: 346 LTALGWNLLGDGLRDILDPK 365
LTA+G+NL GDG+RD+LDPK
Sbjct: 273 LTAVGFNLFGDGIRDLLDPK 292
>dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
Length = 283
Score = 180 bits (451), Expect = 3e-44
Identities = 98/259 (37%), Positives = 147/259 (55%), Gaps = 31/259 (11%)
Query: 107 EYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGK 166
E ++ +PLG DH GRD+L+ LL GA+ + S++ ++ + +GI GL++GY GG
Sbjct: 51 ERLQGMSLQHPLGTDHLGRDVLTRLLLGAQQTVGYSLMALLVALFIGIPFGLISGYKGGI 110
Query: 167 VDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNL 226
VD + MR+ D FL+FP I+AI S +L + GNL
Sbjct: 111 VDRVFMRVADGFLAFPDTIVAIVLSGLLGPGI-------------------------GNL 145
Query: 227 GRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGP 286
++A+++V W YAR+ R + LTE EK YV AR GL + I+ +H+ P+I+G
Sbjct: 146 ------VLAIVMVKWVSYARLVRSTVLTEVEKDYVAIARINGLSSSKIMRKHLFPHIVGH 199
Query: 287 ILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLL 346
+LV TLD G ++L+ + LS++GLGA PP +WG ++ D YF L+ YPGL +++
Sbjct: 200 VLVMATLDLGKIILLISALSYIGLGAQPPTPEWGAMLNDSRPYFQSMPQLMIYPGLAIVI 259
Query: 347 TALGWNLLGDGLRDILDPK 365
L N+LGD LRD D K
Sbjct: 260 VVLLTNMLGDYLRDYFDVK 278
>sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075086|pir||D64184 oligopeptide transport system
permease protein oppC - Haemophilus influenzae (strain
Rd KW20) >gi|1574677|gb|AAC22776.1| (U32792)
oligopeptide ABC transporter, permease protein (oppC)
[Haemophilus influenzae Rd]
Length = 311
Score = 179 bits (450), Expect = 4e-44
Identities = 112/344 (32%), Positives = 171/344 (49%), Gaps = 54/344 (15%)
Query: 31 DWMEKNRSRLEEWRLMLYALNRSPP-------ALIGLFIVIIFILVGIFGPFLAPWKYNF 83
D++E+ R+EE +L +L + A + I++ FI++ I +APW F
Sbjct: 15 DFVEQVADRIEEMQLEGRSLWQDAKRRFFRNKAAVASLIILAFIIIFIT---VAPW---F 68
Query: 84 FPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISI 143
FP Y N+ A P + Y+ G D GRDLL G R S ++ I
Sbjct: 69 FPFTYEDTDWNMMSAAPTMEG----------YHFFGTDASGRDLLVRTAIGGRISLLVGI 118
Query: 144 IVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFIS 203
V +G I G ++GY GGK D L+MR ++ SFP + I
Sbjct: 119 AGAFISVTIGTIYGAISGYVGGKTDMLMMRFLEILSSFPFMFFVI--------------- 163
Query: 204 SHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEA 263
+++ +F ++ + +A+ + W G ARI RG TL+ + K +VEA
Sbjct: 164 -------LLVTLFGQNI---------FLIFIAIGAIAWLGLARIVRGQTLSLKNKEFVEA 207
Query: 264 ARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV 323
A G+P R I+ +HI+PN++G + VY +L+ G++L E+ LSFLGLG P++ WG ++
Sbjct: 208 AIVCGVPRRQIILKHIIPNVLGLVAVYASLEVPGLILFESFLSFLGLGTQEPMSSWGALL 267
Query: 324 YDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
DGA WL+ +P + LT +N +GDGLRD LDPK R
Sbjct: 268 SDGAAQMEVSPWLLIFPAFFLCLTLFCFNFIGDGLRDALDPKDR 311
>pir||E72289 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981701|gb|AAD36229.1|AE001772_8 (AE001772)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 301
Score = 179 bits (449), Expect = 6e-44
Identities = 99/310 (31%), Positives = 164/310 (51%), Gaps = 52/310 (16%)
Query: 56 ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
A +G+ I++ +I + IF P LAP+ PT+ L PP K +
Sbjct: 36 AFVGMIILLFYIFLAIFAPVLAPYD----PTVRVGRS----LQPPSEKHLF--------- 78
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
G D+ GRD+ S ++ G+R + +++ + ++ +GI LGL++GY GG D ++ +
Sbjct: 79 ---GTDNLGRDIFSRVIYGSRIALMVAFLAVVIASAIGIPLGLISGYVGGIFDRVLTLVM 135
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D SFP LILAIA +AVL + + + V+
Sbjct: 136 DAVYSFPGLILAIAVAAVLGPGM-------------------------------MNIAVS 164
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
+ +V+ P Y R+ R + + +LYVEAARA+G IL +++LPN+ I+V ++++
Sbjct: 165 IAVVYAPTYFRVVRNQVTSVKNELYVEAARALGAKDWEILVKYVLPNVFPSIVVVLSMNL 224
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQY-FPRCWWLVFYPGLVVLLTALGWNLL 354
++ EAGLSFLGLG PP DWG + +G ++ R WW V +PGL ++ + LG+++
Sbjct: 225 ADAIMTEAGLSFLGLGIAPPTPDWGFDLSNGQRFILSRAWWGVLFPGLAIITSVLGFSMF 284
Query: 355 GDGLRDILDP 364
+GL +IL+P
Sbjct: 285 SEGLSEILNP 294
>pir||C38447 sporulation initiation protein spo0KC - Bacillus subtilis
>gi|143606|gb|AAA62690.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 305
Score = 176 bits (442), Expect = 4e-43
Identities = 102/333 (30%), Positives = 159/333 (47%), Gaps = 50/333 (15%)
Query: 36 NRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNV 95
++ L W+ + + A++GL I+++ IL+ IF P + + Y+ L
Sbjct: 23 SKKSLSLWKDAMLPFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADK---- 78
Query: 96 YLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGII 155
PP + G D GRD+ GAR S I + + + +G+I
Sbjct: 79 ---PPSKD------------HWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVI 123
Query: 156 LGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAI 215
G ++G+ GG+ DE++MR+ D+ + P+L++ I VLP L
Sbjct: 124 WGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMVVLPKGL----------------- 166
Query: 216 FALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTIL 275
+I+AM I W ARI RG L + + YV A++ +G T +L
Sbjct: 167 --------------FTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLL 212
Query: 276 FRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW 335
F+HI+PN +G ILV +TL + EA LS+LGLG P+A WG + DG W
Sbjct: 213 FKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMASDGLPALTYYPW 272
Query: 336 LVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
+F+P + +T G+N++GDGLRD LDPK R+
Sbjct: 273 RLFFPAGFICITMFGFNVVGDGLRDALDPKLRK 305
>sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442409|pir||A69669 oligopeptide ABC transporter
(permease) oppC - Bacillus subtilis
>gi|40007|emb|CAA39789.1| (X56347) OppC [Bacillus
subtilis] >gi|2633499|emb|CAB13002.1| (Z99110)
oligopeptide ABC transporter (permease) [Bacillus
subtilis]
Length = 305
Score = 176 bits (442), Expect = 4e-43
Identities = 102/333 (30%), Positives = 159/333 (47%), Gaps = 50/333 (15%)
Query: 36 NRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNV 95
++ L W+ + + A++GL I+++ IL+ IF P + + Y+ L
Sbjct: 23 SKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADK---- 78
Query: 96 YLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGII 155
PP + G D GRD+ GAR S I + + + +G+I
Sbjct: 79 ---PPSKD------------HWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVI 123
Query: 156 LGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAI 215
G ++G+ GG+ DE++MR+ D+ + P+L++ I VLP L
Sbjct: 124 WGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMVVLPKGL----------------- 166
Query: 216 FALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTIL 275
+I+AM I W ARI RG L + + YV A++ +G T +L
Sbjct: 167 --------------FTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLL 212
Query: 276 FRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW 335
F+HI+PN +G ILV +TL + EA LS+LGLG P+A WG + DG W
Sbjct: 213 FKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMASDGLPALTYYPW 272
Query: 336 LVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
+F+P + +T G+N++GDGLRD LDPK R+
Sbjct: 273 RLFFPAGFICITMFGFNVVGDGLRDALDPKLRK 305
>emb|CAC11409.1| (AL445063) probable dipeptide transport system permease protein
dppC [Thermoplasma acidophilum]
Length = 265
Score = 174 bits (437), Expect = 1e-42
Identities = 106/304 (34%), Positives = 153/304 (49%), Gaps = 58/304 (19%)
Query: 64 IIFILVGIFGPFLA-----PWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPL 118
++ + GI GP +A P+KYN V L PP Y L
Sbjct: 9 LLEVFFGISGPAIALLPHDPFKYNLV----------VGLHPPDRT------------YLL 46
Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
G + G D+LS +L ISIIV++ GV LG + G++AGY GG +DE+IMR+TD F
Sbjct: 47 GTNANGEDILSRMLYAMPRDAYISIIVVLSGVLLGGLFGIIAGYRGGYLDEVIMRITDAF 106
Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
LS PALIL IA S + + L VI+A++I
Sbjct: 107 LSLPALILVIALSVLFHETLGG-------------------------------VILALVI 135
Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
VWWP YAR R TL + +V+AA+ + + F ++ N I P++ Y LDFG V
Sbjct: 136 VWWPIYARFFRAQTLRIKNLDFVQAAKLGNVSFAKLFFSYLFINSIDPVVAYAALDFGNV 195
Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGL 358
+L + L+FLG+G PPI + G + +G P WW +PGL +L+ +G+ L+GD +
Sbjct: 196 ILTYSTLAFLGIGLEPPIPELGSMASNGVGTLPTGWWYAVFPGLAILIIVIGFVLVGDRM 255
Query: 359 RDIL 362
+DI+
Sbjct: 256 QDIV 259
>gi|11499358 dipeptide ABC transporter, permease protein (dppC) [Archaeoglobus
fulgidus] >gi|7442417|pir||H69470 dipeptide ABC
transporter, permease protein (dppC) homolog -
Archaeoglobus fulgidus >gi|2648779|gb|AAB89481.1|
(AE000980) dipeptide ABC transporter, permease protein
(dppC) [Archaeoglobus fulgidus]
Length = 286
Score = 172 bits (431), Expect = 7e-42
Identities = 103/316 (32%), Positives = 160/316 (50%), Gaps = 62/316 (19%)
Query: 59 GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNV-----YLAPPGSKAVLEYYNNAT 113
GL I+I L+ +F PF+AP YD + L PP ++ ++
Sbjct: 27 GLAIIITVALMAVFAPFIAP-------------YDPIKSGKDVLQPPSAEHIM------- 66
Query: 114 IYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMR 173
G D+ GRD+ S ++ G+R + + + +G+ LGL++GY+GGK+D L+
Sbjct: 67 -----GTDNLGRDVFSRIVFGSRVVLAVVLSASLVSTVIGVPLGLISGYFGGKLDRLLSM 121
Query: 174 LTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVI 233
L D +FP LILAIA +AVL + +
Sbjct: 122 LMDSMYAFPGLILAIAIAAVLGPSV-------------------------------FNAV 150
Query: 234 VAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITL 293
VA+ +V+ P Y R+ RG TL+ + L+VEAA+A G I+ ++I PN+I ++V +L
Sbjct: 151 VAISVVYVPTYFRMIRGQTLSVKSLLFVEAAKAAGASDWRIMRKYIFPNLIPTLVVVFSL 210
Query: 294 DFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPR-CWWLVFYPGLVVLLTALGWN 352
+L EAGLSFLG + P DWG + G Y P WW++ +PGL+V+L +LG+
Sbjct: 211 SVADAILTEAGLSFLGFIVSAPTPDWGFELASGRPYLPAGYWWMITFPGLMVMLLSLGFA 270
Query: 353 LLGDGLRDILDPKTRR 368
L+G+GL +I P+ R
Sbjct: 271 LVGEGLSEIYAPRRER 286
>sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|972896|gb|AAA95973.1| (U17295) DppC [Haemophilus
influenzae] >gi|1574113|gb|AAC22839.1| (U32798)
dipeptide ABC transporter, permease protein (dppC)
[Haemophilus influenzae Rd]
Length = 295
Score = 171 bits (430), Expect = 1e-41
Identities = 102/310 (32%), Positives = 152/310 (48%), Gaps = 40/310 (12%)
Query: 59 GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPL 118
G I +IFIL+ LAP+ F P T L PP +Y Y L
Sbjct: 26 GALIGLIFILIVALISILAPYIAPFDP---TEQNRTALLLPPA------WYEGGNPAYLL 76
Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
G D GRD+LS ++ G R S I+++ G LGL++GYYGG +D +I+RL D+
Sbjct: 77 GTDDIGRDILSRIIYGTRISVFAGFIIVLLSCAFGTSLGLISGYYGGVLDTIIIRLIDIM 136
Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
L+ P L+L I ++L P + LAI + +
Sbjct: 137 LAIPNLLLTIVVVSIL----------EPSLANATLAIAVVSI------------------ 168
Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
P Y R+TR + + E+ + YV +++ G ++F ILPN + P++V +T+
Sbjct: 169 ---PSYVRLTRAAMMNEKNRDYVTSSKVAGAGILRLMFIVILPNCLAPLIVQMTMGISNA 225
Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGL 358
+L A L FLG+GA PP + G ++ + + WLV PGLV+L L +NL+GDGL
Sbjct: 226 ILELATLGFLGIGAKPPTPELGTMLSEARGFMQAANWLVTIPGLVILSLVLAFNLMGDGL 285
Query: 359 RDILDPKTRR 368
RD LDPK ++
Sbjct: 286 RDALDPKLKQ 295
>gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola]
Length = 338
Score = 170 bits (427), Expect = 2e-41
Identities = 89/267 (33%), Positives = 140/267 (52%), Gaps = 33/267 (12%)
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
+P G D YGRD +L+G S + + V +G+ +G VAG++GG+VD +IMRL
Sbjct: 77 HPFGTDKYGRDTFMRVLEGGWISLQVGFLSTFMAVTIGLTMGSVAGFFGGRVDNIIMRLI 136
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
++ SFP L +A SA+ +R F RL +++
Sbjct: 137 EILSSFPFLAIAYTLSAIFRERPPEF--------------------------RLYVIVII 170
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
+ ++ W G AR+ RG L RE+ ++ A RA+G+ R +FRH++PN++ ++V TL F
Sbjct: 171 LGLLSWTGLARLIRGQILALREQEFIVATRALGIKRRNQIFRHLVPNVLATVVVSATLTF 230
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRC---WWLVFYPGLVVLLTALGWN 352
+L EA LSFL L T PI WG ++ ++ WW+ +PG ++ + N
Sbjct: 231 ASSILSEAFLSFLNLSVTEPIPTWGALLSKASENSTSLRTFWWIWIFPGAMLFFFIMSIN 290
Query: 353 LLGDGLRDILDPKTRRSIEFKVKKQKK 379
L+G+GLRD +DPK E+ K Q+K
Sbjct: 291 LIGEGLRDSIDPKA----EYTTKAQRK 313
>pir||A75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6459332|gb|AAF11131.1|AE002000_7
(AE002000) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 376
Score = 170 bits (426), Expect = 3e-41
Identities = 122/396 (30%), Positives = 188/396 (46%), Gaps = 88/396 (22%)
Query: 34 EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPW---KYN-------- 82
+K + +W+++ R+P A +GLFI+ L+ +F FLAP+ +Y+
Sbjct: 8 QKIQKSKSQWQVIRTQFFRNPLARLGLFILGFLYLIALFAGFLAPYGLTEYSTSDRISWA 67
Query: 83 ------------FFPTLYTSHYD-------NVYLAPPGSKAVLEYY-NNATI-------- 114
F P +Y D + Y P K ++++ N I
Sbjct: 68 PPTKIHWQDDGKFAPHVYGLKRDIDMETFRDKYTEDPSVKCPVKFFVRNPDIEDRTYKFL 127
Query: 115 -----------------YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILG 157
Y LG+D++GRD S ++ G++ S I II + + LG++LG
Sbjct: 128 GFIPSSLKLMGVDEPCKLYLLGSDNFGRDQFSRIMYGSQISLTIGIIASLLSLVLGLVLG 187
Query: 158 LVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFA 217
+AGY+ G D LIMRL ++ + P L L I A+ P + ++P++ +F
Sbjct: 188 GIAGYFRGLADTLIMRLVEVLSAIPDLFLLILLRAMFP------LEANPIL------VFY 235
Query: 218 LDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFR 277
+ +G LLA I W G AR+ RG L+ RE YV+AA A+G I+ +
Sbjct: 236 I-------VGGLLAFI------GWGGIARVVRGQILSGREMDYVQAANALGASDARIIGQ 282
Query: 278 HILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWG---RIVYDGA--QYFPR 332
H+LPN I+V ++L G +L E+GLSF+G+G P A WG ++ DG R
Sbjct: 283 HLLPNSATFIIVAMSLAIPGYILTESGLSFIGIGIVEPYASWGSLLKLAQDGGFESLDTR 342
Query: 333 CWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
W V PG+ ++L LGW +GDGLRD DP+ RR
Sbjct: 343 PW--VLLPGVFIMLAVLGWQFVGDGLRDAFDPRRRR 376
>gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhodococcus fascians]
Length = 714
Score = 168 bits (421), Expect = 1e-40
Identities = 102/310 (32%), Positives = 160/310 (50%), Gaps = 50/310 (16%)
Query: 53 SPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNA 112
+P A+ L V++ + G F+AP+ N + + +AP ++
Sbjct: 320 NPVAMTALIFVLVVAIAGFMYSFVAPYDPN----------EQLDVAP---------FSGP 360
Query: 113 TIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIM 172
+ + G D GRD+LS LL GA S S+IV++ + + + +GL +GY G D L+M
Sbjct: 361 SADHWFGTDGLGRDVLSRLLAGASVSLRFSVIVVVTALIVALPIGLFSGYIGRWPDTLLM 420
Query: 173 RLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAV 232
R+ + SFPA++LAIA +L L L +AV
Sbjct: 421 RIMEGIHSFPAIVLAIAIVGILGPSL---------------------------LNAGIAV 453
Query: 233 IVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYIT 292
VA++ PG+AR+ R L+ RE+++++A+RAIG PTR IL RH+ PN++ P++V +
Sbjct: 454 AVAVV----PGFARLIRAQALSVREEVFIDASRAIGTPTRRILLRHLFPNVLSPLIVQVA 509
Query: 293 LDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWN 352
+ G +L EAGLS+LGLG PP A WG ++ W V PG+ ++L L +N
Sbjct: 510 VVLGFALLAEAGLSYLGLGVQPPQASWGSMLRQATDSQLTNPWGVLPPGIAIVLVVLAFN 569
Query: 353 LLGDGLRDIL 362
+G+GLR L
Sbjct: 570 TIGEGLRTAL 579
>pir||C72367 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981046|gb|AAD35618.1|AE001728_19 (AE001728)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 516
Score = 166 bits (415), Expect = 5e-40
Identities = 96/262 (36%), Positives = 140/262 (52%), Gaps = 29/262 (11%)
Query: 108 YYNNATI-YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGK 166
Y NN + Y +GAD YGRD+ S ++ +R S I I + L ++ G ++GYYGG
Sbjct: 279 YDNNEYVRLYIMGADQYGRDVWSRIVFASRISLSIGFIGMFITFALSLVFGGISGYYGGI 338
Query: 167 VDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNL 226
VDE +MR +++ +S P L I ++LP + P + VL +F L
Sbjct: 339 VDEFMMRFSEIIMSLPGFYLLILLRSLLPLDI-------PSTQVYVLLVFILS------- 384
Query: 227 GRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGP 286
+ W G AR+ RG L+ +++ +VEAARA+G P ILFRH+LPN
Sbjct: 385 -----------FIGWAGRARVIRGMVLSIKQREFVEAARALGFPDTRILFRHVLPNTASY 433
Query: 287 ILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV--YDGAQYFPRCWWLVFYPGLVV 344
++V TL G +L EA LSFLGLG P A WG ++ Y + WL+ PG+ +
Sbjct: 434 LIVAATLAIPGYILGEASLSFLGLGIREPSASWGLMLAQAQNVTYMTKYPWLLI-PGIFI 492
Query: 345 LLTALGWNLLGDGLRDILDPKT 366
+T L +N +GD LRD LDP++
Sbjct: 493 FITVLSFNFVGDALRDALDPRS 514
>pir||S75778 oligopeptide transport system permease protein appC - Synechocystis
sp. (strain PCC 6803) >gi|1001269|dbj|BAA10513.1|
(D64003) oligopeptide transport system permease protein
[Synechocystis sp.]
Length = 371
Score = 164 bits (411), Expect = 2e-39
Identities = 91/251 (36%), Positives = 136/251 (53%), Gaps = 27/251 (10%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG D GRD S LL G R S I +I I PLG+++G +AGY+GG +D ++MRL ++
Sbjct: 143 LGTDEQGRDQFSRLLFGGRISLFIGLIGITISFPLGMVVGGIAGYFGGWLDVVLMRLVEV 202
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
++ P + L +A +AVLP L + R L ++V
Sbjct: 203 LMTIPGIYLLVALAAVLPPGL-------------------------SSAQRFLLIVVITS 237
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
+ W G AR+ RG L+ +++ YV+AA+A+G I+ RHILP I++ TL G
Sbjct: 238 FISWSGLARVIRGQVLSLKQQEYVQAAKAMGAGAPRIIVRHILPQTASYIIISATLAVPG 297
Query: 298 VVLMEAGLSFLGLGATPPIADWGRI--VYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
++ E+ LS +GLG P WG + + A WLV+ P ++++LT L +NLLG
Sbjct: 298 FIVAESVLSLIGLGIQQPDPSWGNLLSIATNASILVLQPWLVWPPAVLIILTVLAFNLLG 357
Query: 356 DGLRDILDPKT 366
DGLRD LDP++
Sbjct: 358 DGLRDALDPRS 368
>gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; DppC1 [Halobacterium
sp. NRC-1]
Length = 315
Score = 162 bits (407), Expect = 5e-39
Identities = 89/255 (34%), Positives = 136/255 (52%), Gaps = 33/255 (12%)
Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
G D GRD+ L GA + + + LG+ LG++A YY D +IMR D+
Sbjct: 92 GTDAAGRDIFKRTLYGAWIAIKYGTVTVAASTFLGVALGIIAAYYSDLTDNVIMRTMDVL 151
Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
L+FP+L+LA+A ++AIF AG L V++A+ +
Sbjct: 152 LAFPSLLLALA----------------------LVAIFG-----AG----LWKVVIALTL 180
Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
V+ P +AR+ RG+ L E Y+EA A+G +L RH+ PN + P+ V TL++G
Sbjct: 181 VYTPRFARVVRGAALKVLEDEYIEATEALGATDARVLARHVFPNTLAPVTVQSTLNYGLA 240
Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQ--YFPRCWWLVFYPGLVVLLTALGWNLLGD 356
++ A LSFLG GA P + WG ++ +G WW+ +PGL + + LG+NLLGD
Sbjct: 241 IIDFAALSFLGFGAAPGMPSWGLMLSNGVTNGLLTGKWWMSLFPGLFLAILVLGFNLLGD 300
Query: 357 GLRDILDPKTRRSIE 371
G+RD LDP+ R +++
Sbjct: 301 GMRDALDPRMREAVD 315
>sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|72439|pir||QREBOC oligopeptide transport system
permease protein oppC - Salmonella typhimurium
>gi|47804|emb|CAA29041.1| (X05491) Opp C (AA1-301)
[Salmonella typhimurium]
Length = 302
Score = 162 bits (406), Expect = 6e-39
Identities = 100/312 (32%), Positives = 164/312 (52%), Gaps = 51/312 (16%)
Query: 56 ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
+LI LF++ +F+ V P L+ + Y + + + + AP + A+ +
Sbjct: 42 SLIVLFLIALFVTVA---PMLSQFTY------FDTDWGMMSSAP----------DMASGH 82
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
Y G D GRDLL + G R S ++ I + V +G + G ++GY GGK+D ++MRL
Sbjct: 83 Y-FGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLL 141
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
++ SFP + I +++ F ++ L + VA
Sbjct: 142 EILNSFPFMFFVI----------------------LLVTFFGQNI---------LLIFVA 170
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
+ +V W ARI RG TL+ + K ++EAA+ G+ T +I+ RHI+PN++G ++VY +L
Sbjct: 171 IGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTASIVIRHIVPNVLGVVVVYASLLV 230
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
++L E+ LSFLGLG P++ WG ++ DGA WL+ +P +++T +N +G
Sbjct: 231 PSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIG 290
Query: 356 DGLRDILDPKTR 367
DGLRD LDPK R
Sbjct: 291 DGLRDALDPKDR 302
>pir||D72424 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980545|gb|AAD35153.1|AE001692_10 (AE001692)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 362
Score = 161 bits (404), Expect = 1e-38
Identities = 110/377 (29%), Positives = 172/377 (45%), Gaps = 83/377 (22%)
Query: 42 EWRLMLYALNRSPPALIGLFIVIIFILVGIF----------------------------- 72
EW+LM + ++ A+IG+ I+ I ++GIF
Sbjct: 12 EWKLMWWRFKKNKLAVIGMVILGILYVLGIFCEFFSPYDPNRIFARYVYAPPQKIHFFHE 71
Query: 73 GPFLAPWKYNF--------FPTLYTSHYDNVY---LAPPGSKAVLEYYNNATIYY----- 116
G F+ P+ Y + F +Y +Y L G K L + +++
Sbjct: 72 GKFIGPFVYGYKMERDPETFRRIYKEDKTKIYKIRLFVHGDKYKLWNTWESDVHFFGVEE 131
Query: 117 ----PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIM 172
G D GRD+ S +L GAR S I ++ + + LGII+G ++GYYGGK+D I
Sbjct: 132 GTIFLFGTDRLGRDVFSRILYGARISTTIGLVGVFLSMVLGIIIGGISGYYGGKIDNFIQ 191
Query: 173 RLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAV 232
R + +S P + L +A +A LP R + A+
Sbjct: 192 RTIEFLISIPTIPLWMALAAALP-------------------------RYWSQIKVYFAI 226
Query: 233 IVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYIT 292
V + ++ W G AR+ R L+ +++ +V AAR G I+F+H+LP++ ++ T
Sbjct: 227 TVILSLIGWTGLARVVRSKFLSLKDEDFVVAARLAGASEWRIIFKHMLPSLTSHLIASAT 286
Query: 293 LDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG-----AQYFPRCWWLVFYPGLVVLLT 347
L G++L E GLSFLGLG PP WG ++ + +P W L+ PGL V++T
Sbjct: 287 LSIPGMILGETGLSFLGLGLRPPAISWGVLLQEAQNIRTVALYP--WLLI--PGLFVIIT 342
Query: 348 ALGWNLLGDGLRDILDP 364
L +N +GDGLRD DP
Sbjct: 343 VLCFNFVGDGLRDAADP 359
>sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|7442406|pir||H64871 oligopeptide transport system
permease protein oppC - Escherichia coli
>gi|1742034|dbj|BAA14777.1| (D90763) Oligopeptide
transport system permease protein OppC. [Escherichia
coli] >gi|1787498|gb|AAC74327.1| (AE000223) homolog of
Salmonella oligopeptide transport permease protein
[Escherichia coli K12] >gi|1805526|dbj|BAA16040.1|
(D90852) Oligopeptide transport system permease protein
OppC. [Escherichia coli]
Length = 302
Score = 160 bits (400), Expect = 3e-38
Identities = 97/320 (30%), Positives = 156/320 (48%), Gaps = 64/320 (20%)
Query: 56 ALIGLFIVIIFILVGIFGPFLAPWKYN--------FFPTLYTSHYDNVYLAPPGSKAVLE 107
A+ L ++++ L I P L+ + Y+ P + + HY
Sbjct: 39 AVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHY--------------- 83
Query: 108 YYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
G D GRDLL + G R S ++ + + V +G + G ++GY GGKV
Sbjct: 84 ----------FGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKV 133
Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
D ++MRL ++ SFP + I +++ F ++
Sbjct: 134 DSVMMRLLEILNSFPFMFFVI----------------------LLVTFFGQNI------- 164
Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
L + VA+ +V W ARI RG TL+ + K ++EAA+ G+ T I+ RHI+PN++G +
Sbjct: 165 --LLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVV 222
Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
+VY +L ++L E+ LSFLGLG P++ WG ++ DGA WL+ +P +++T
Sbjct: 223 VVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVT 282
Query: 348 ALGWNLLGDGLRDILDPKTR 367
+N +GDGLRD LDPK R
Sbjct: 283 LFCFNFIGDGLRDALDPKDR 302
>pir||H72451 probable peptide transport system permease protein APE2260 -
Aeropyrum pernix (strain K1) >gi|5105961|dbj|BAA81272.1|
(AP000064) 280aa long hypothetical peptide transport
system permease protein [Aeropyrum pernix]
Length = 280
Score = 159 bits (398), Expect = 5e-38
Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 53/305 (17%)
Query: 59 GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKA--VLEYYNNATIYY 116
GL IV +++V + P++AP+ P SK V E+ + ++ +
Sbjct: 19 GLAIVAFYLVVALAAPYIAPYS-------------------PHSKVSDVPEHPSPPSLKH 59
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
P G + G D+ S ++ G R + ++ + G+ +G+ LGLV+GY+GG VD ++ + D
Sbjct: 60 PFGTNEIGYDMFSRVVLGTRIVLKVVLLSSVMGLAVGVPLGLVSGYFGGPVDRVLSVVMD 119
Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
+FP ++LAIA ++VL + L +A+
Sbjct: 120 SLYAFPGIVLAIAIASVLGPSV-------------------------------LNAAIAL 148
Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
++V+ P Y R+TR + + + Y+ A R +G P I+FRH+LP ++ +LV L
Sbjct: 149 MVVYVPAYFRMTRARVIEIKTQDYIVALRVLGAPHSRIMFRHVLPGVMPTVLVVYGLASA 208
Query: 297 GVVLMEAGLSFLGLGATPPIADWG-RIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
+L EAGLSF GL T P DWG I Y Q+ WWL +PGL +L ALG+ ++G
Sbjct: 209 DAILTEAGLSFFGLVVTYPAPDWGLDISYGIKQFLSGSWWLTLFPGLAILTLALGFAMIG 268
Query: 356 DGLRD 360
+GL +
Sbjct: 269 EGLAE 273
>sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
>gi|98273|pir||S16649 dipeptide ABC transporter
(permease) - Bacillus subtilis
>gi|2632015|emb|CAA05574.1| (AJ002571) DppC [Bacillus
subtilis] >gi|2633648|emb|CAB13151.1| (Z99110) dipeptide
ABC transporter (permease) [Bacillus subtilis]
Length = 320
Score = 159 bits (398), Expect = 5e-38
Identities = 98/329 (29%), Positives = 152/329 (45%), Gaps = 55/329 (16%)
Query: 41 EEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPP 100
+ WR L ++ A+ GLFI++ ++ + GPFL+P ++ L P
Sbjct: 46 DAWR----RLKKNKLAMAGLFILLFLFVMAVIGPFLSPH------SVVRQSLTEQNLPPS 95
Query: 101 GSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVA 160
+ G D GRD+ + GAR S + ++ + +G+I G VA
Sbjct: 96 AD-------------HWFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVA 142
Query: 161 GYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDV 220
GY GG++D ++MR+ ++ P L++ I ++ L
Sbjct: 143 GYKGGRIDSIMMRIIEVLYGLPYLLVVILLMVLMGPGLGT-------------------- 182
Query: 221 REAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHIL 280
+IVA+ + W G ARI RG L + YV A++ G T I+ +++L
Sbjct: 183 -----------IIVALTVTGWVGMARIVRGQVLQIKNYEYVLASKTFGAKTFRIIRKNLL 231
Query: 281 PNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG-AQYFPRCWWLVFY 339
PN +G I+V +TL + E+ LSFLGLG P A WG + DG WW +F+
Sbjct: 232 PNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMANDGLPTILSGHWWRLFF 291
Query: 340 PGLVVLLTALGWNLLGDGLRDILDPKTRR 368
P + LT +N+LGDGL+D LDPK RR
Sbjct: 292 PAFFISLTMYAFNVLGDGLQDALDPKLRR 320
>pir||JC5121 oligopeptide permease-like protein - Synechococcus sp
>gi|1332418|dbj|BAA12725.1| (D85103) OppC-like protein
[Synechococcus sp.]
Length = 351
Score = 156 bits (391), Expect = 4e-37
Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 27/250 (10%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG D GRD S LL G+R S + ++ ++ PLGI++G +AGY+GG VD LIMRL ++
Sbjct: 126 LGTDDQGRDQFSRLLYGSRISLSVGLVGVILTFPLGILVGGIAGYWGGWVDALIMRLVEV 185
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
++ P+L L +A +AVLP L + R L ++
Sbjct: 186 LMTIPSLYLLVALAAVLPPGL-------------------------SSAERFLLIVAITS 220
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
++ W G AR+ RG L+ RE+ YV+A++ +G +L RHILP + +++ TL
Sbjct: 221 LINWAGLARVIRGQVLSLREREYVQASQVMGASRLYLLIRHILPQTLTYVIIAATLAVPS 280
Query: 298 VVLMEAGLSFLGLGATPPIADWGRI--VYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
++ E+ LS +GLG P WG + + A WL++ P L++++ L +N++G
Sbjct: 281 FIVAESVLSLVGLGIQQPDPSWGNMLSLATNASMLLLNPWLIWPPALLIVVAVLAFNVVG 340
Query: 356 DGLRDILDPK 365
DGLRD LDP+
Sbjct: 341 DGLRDRLDPR 350
>pir||D82242 oligopeptide ABC transporter, permease protein VC1093 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655562|gb|AAF94252.1| (AE004190) oligopeptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 300
Score = 155 bits (387), Expect = 1e-36
Identities = 96/326 (29%), Positives = 154/326 (46%), Gaps = 52/326 (15%)
Query: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
W+ R+ A++ LF++++ L +F P + + Y D + A
Sbjct: 26 WQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYE----------DTDWYAMHAG 75
Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
+ ++ G D GRDL L G R S ++ I+ + V +G + G +G+
Sbjct: 76 PSAEHWF---------GTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGF 126
Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
GG+ D ++MR+ ++ + P + L I VL F
Sbjct: 127 IGGRTDRVMMRILEILYAIPFMFLVI-----------------------VLVTF------ 157
Query: 223 AGNLGR-LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILP 281
GR ++ + VA+ + W ARI RG TL+ R K ++EAA G+ I+ RHI+P
Sbjct: 158 ---FGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVP 214
Query: 282 NIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPG 341
N++G + VY TL ++L E+ LSFLGLG P+ WG ++ +GA W + +P
Sbjct: 215 NVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPA 274
Query: 342 LVVLLTALGWNLLGDGLRDILDPKTR 367
++LT +N +GDGLRD LDPK R
Sbjct: 275 AFMVLTLFCFNYVGDGLRDALDPKDR 300
>pir||T45277 oligopeptide transport integral membrane protein bldKA [imported] -
Streptomyces coelicolor >gi|1532201|gb|AAB09554.1|
(U68036) BldKA [Streptomyces coelicolor A3(2)]
Length = 335
Score = 154 bits (386), Expect = 1e-36
Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 22/326 (6%)
Query: 44 RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFP-TLYTSHYDNVYLAPPGS 102
+LM R +I F+V+ F ++ P ++ Y P TLY DN L +
Sbjct: 31 QLMWARFKRDRAGVISAFVVLFFFVIAAAAPLIS-MVYGKDPYTLYGQ--DNPDLLDMFT 87
Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
Y ++ GRD+ + LL G R S ++ + LG+++GL GY
Sbjct: 88 MPAAPYGGIDGDFWFGIEPGLGRDVFTQLLYGMRNSMATALAATIIMTVLGVLIGLAGGY 147
Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
+GGK++ + R+TD F++ P+ + F+++ PVI +F +E
Sbjct: 148 FGGKIEYWLGRITDFFMALPSQLF--------------FVAAMPVIT----TVFVAPDKE 189
Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
R A+I+ + + W ARI RG+ ++ R++ ++EAAR G IL + +LPN
Sbjct: 190 TPTYVRAAAIIIVLSFLGWMSMARIVRGAKMSLRDREFIEAARISGASPWRILRKELLPN 249
Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
I+ P LV TL +L A LSF+G+G P DWGR+ GA + + + +PG+
Sbjct: 250 IVTPTLVQATLTLPSTILSIAFLSFVGVGYVEPTPDWGRMFAIGADIVEQDPYYMLFPGV 309
Query: 343 VVLLTALGWNLLGDGLRDILDPKTRR 368
+++ + +NLLGD +RD DPK R
Sbjct: 310 AMVIFIVAFNLLGDSVRDAFDPKGNR 335
>pir||D70141 oligopeptide ABC transporter, permease protein (oppC-1) homolog -
Lyme disease spirochete >gi|2688244|gb|AAC66723.1|
(AE001140) oligopeptide ABC transporter, permease
protein (oppC-1) [Borrelia burgdorferi]
Length = 349
Score = 153 bits (383), Expect = 3e-36
Identities = 104/378 (27%), Positives = 169/378 (44%), Gaps = 86/378 (22%)
Query: 34 EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYD 93
E+N S+LE + N+ A LF++ +I + I P L +KY+ T H D
Sbjct: 9 EENNSKLERRAWSRFKENKL--AFGSLFVIGFYISIAILQPILPIYKYH---TQIVEHSD 63
Query: 94 NVYLAPPGSKAVLE-YYNNATIY------------------------------------- 115
PP +A E +YN +
Sbjct: 64 ----LPPSFQAAGELWYNKEKKFIEKLAKKEKREINEEELKKLEDIKRKIENEVQIIDKK 119
Query: 116 --------YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
Y LG D+ GRDLL+ L+QG++ S + I + +G ILG +AG++GG
Sbjct: 120 EVKIHKRVYLLGTDNLGRDLLARLIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLP 179
Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
D++I + ++ + P L++ I A++ E+ ++ +F
Sbjct: 180 DKIITKTIEILYALPYLLIVIILMAIM--------------ERSIIGLF----------- 214
Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
+A+ V W AR+ RG + +++AA+ +G + I+ +H++PN IG I
Sbjct: 215 ------IALAFVSWLTVARVVRGQVQSLSSSEFIQAAKTLGATNQRIILKHLIPNSIGMI 268
Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
+++ T+ ++ EA LSFLGLG + P+ WG +V +G F W VF P +V+ +
Sbjct: 269 VIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQNGIATFVEYPWKVFIPAIVMTIF 328
Query: 348 ALGWNLLGDGLRDILDPK 365
L N LGDGLRD DPK
Sbjct: 329 LLFMNFLGDGLRDAFDPK 346
>emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis]
Length = 320
Score = 153 bits (383), Expect = 3e-36
Identities = 96/329 (29%), Positives = 150/329 (45%), Gaps = 55/329 (16%)
Query: 41 EEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPP 100
+ WR L ++ A+ GLFI++ ++ + GPFL+P ++ L P
Sbjct: 46 DAWR----RLKKNKLAMAGLFILLFLFVMAVIGPFLSPH------SVVRQSLTEQNLPPS 95
Query: 101 GSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVA 160
+ G D GRD+ + GAR S + ++ + +G+I G VA
Sbjct: 96 AD-------------HWFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVA 142
Query: 161 GYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDV 220
GY GG++D ++MR+ ++ P L++ I ++ L
Sbjct: 143 GYKGGRIDSIMMRIIEVLYGLPYLLVVILLMVLMGPGLGT-------------------- 182
Query: 221 REAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHIL 280
+IVA+ + W G ARI RG L + YV A++ G T I+ +++L
Sbjct: 183 -----------IIVALTVTGWVGMARIVRGQVLQIKNYEYVLASKTFGAKTFRIIRKNLL 231
Query: 281 PNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG-AQYFPRCWWLVFY 339
N +G I+V +TL + E+ LSFLGLG P A WG + DG WW +F+
Sbjct: 232 RNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMANDGLPTILSGHWWRLFF 291
Query: 340 PGLVVLLTALGWNLLGDGLRDILDPKTRR 368
P + T +N+LGDGL+D LDPK RR
Sbjct: 292 PAFFISSTMYAFNVLGDGLQDALDPKLRR 320
>pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1001402|dbj|BAA10024.1| (D63999) oligopeptide
transport system permease protein [Synechocystis sp.]
Length = 294
Score = 153 bits (383), Expect = 3e-36
Identities = 95/309 (30%), Positives = 155/309 (49%), Gaps = 43/309 (13%)
Query: 52 RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
+ P A + L +II +L +FGP F + D A P S
Sbjct: 22 QKPLASLSLITLIIIVLSVVFGPI--------FYRVPIDQIDFSQTAVPPSWQ------- 66
Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
+PLG + G+D L+ LL G R S + + + + LG ++G +AGY+GG D ++
Sbjct: 67 ----HPLGTNDLGQDQLARLLIGGRISLAVGLSAMAVSLTLGTLIGAIAGYFGGWWDVIL 122
Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
MR+TD+FL+ P L L + +V+ +F V A + + +
Sbjct: 123 MRITDLFLALPQLPLVL----------------------LVVYLFREPVTRATSPEKGIF 160
Query: 232 VIVAMII--VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILV 289
++V ++I + W AR+ RG+ L RE +V+AA A+G + I++RH+LPN++ I+V
Sbjct: 161 ILVVLLIGLLNWMSVARLVRGNILRLREMEFVKAAIAMGAGSNHIIWRHLLPNVLNLIIV 220
Query: 290 YITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTAL 349
+L G ++ E+ LSFLGLG P + WG+++Y Y + +PGL + +T L
Sbjct: 221 AASLAVGNAIITESTLSFLGLGFPPDVPTWGQMLYTAKDYLETAPLMAVFPGLAIFITVL 280
Query: 350 GWNLLGDGL 358
N LGDG+
Sbjct: 281 SVNYLGDGI 289
>dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 293
Score = 153 bits (382), Expect = 4e-36
Identities = 94/332 (28%), Positives = 160/332 (47%), Gaps = 50/332 (15%)
Query: 46 MLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAV 105
+L L R A + L +++I I+VG+F P AP PP +
Sbjct: 3 ILKNLMRDKVATLSLSVIVITIVVGLFAPVFAPH-------------------PPNEVHM 43
Query: 106 LEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGG 165
Y + + Y LG DH GR +LS L+ G R S + ++ + V +G++LG +AGY+ G
Sbjct: 44 ELRYASPSWEYLLGNDHLGRCILSRLIYGIRPSVLSVLVALFLTVLIGLVLGFIAGYFRG 103
Query: 166 KVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGN 225
KVD +IMR+ D+ LSFP ++ +AF + IF + +
Sbjct: 104 KVDAVIMRICDIMLSFPGYVMPLAF----------------------IGIFGVGLEN--- 138
Query: 226 LGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIG 285
+++A I++ W +AR R S + + YV+ A+A G+ I+++HI+P
Sbjct: 139 ------ILIAFILMKWAWFARAIRTSVMQYSQVDYVKFAKASGIHDLKIIYKHIVPVTFA 192
Query: 286 PILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVL 345
+ V + ++L +G SFLGLG P A+WG ++ + L+ PGL ++
Sbjct: 193 DVAVISSGSISSMILQISGFSFLGLGIQAPHAEWGMMLNEARNVMFSRPELMLAPGLAII 252
Query: 346 LTALGWNLLGDGLRDILDPKTRRSIEFKVKKQ 377
+ +N L D L+ LDPK S +++ +++
Sbjct: 253 IVVAAFNFLSDALQVALDPKLLTSKQYRRERE 284
>pir||C75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6460716|gb|AAF12421.1|AE001863_46
(AE001863) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 369
Score = 153 bits (382), Expect = 4e-36
Identities = 86/258 (33%), Positives = 134/258 (51%), Gaps = 34/258 (13%)
Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
++ G D GRDL S L GA+ S + ++ ++ LGI+LG V+GY+GG VD LI R+
Sbjct: 141 FFLFGTDQLGRDLFSRTLVGAQVSMTVGVVGVLISFALGILLGGVSGYFGGWVDTLIQRV 200
Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
++ LSFP L + +A + ++P R + ++
Sbjct: 201 VEVLLSFPRLPILLALATLIPARWPS-------------------------TWVYTGIVA 235
Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
+ ++ W AR+ RG L R YV AA+A+G ++ RHI PN+ +LV TL
Sbjct: 236 VLALIGWASLARVVRGQVLAARNLDYVSAAQAMGASNLRVILRHITPNLSSFLLVTATLA 295
Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQY-----FPRCWWLVFYPGLVVLLTAL 349
G +L E+ LSFLGLG P+ WG ++ D ++ +P WL+ +PGL V ++ L
Sbjct: 296 LPGYILGESTLSFLGLGIKEPMTSWGLLLRDASKLEVVSSYP---WLL-WPGLFVFISVL 351
Query: 350 GWNLLGDGLRDILDPKTR 367
+N +GD LRD D ++R
Sbjct: 352 AFNFMGDALRDAADTQSR 369
>gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; DppC2 [Halobacterium
sp. NRC-1]
Length = 526
Score = 153 bits (382), Expect = 4e-36
Identities = 107/387 (27%), Positives = 176/387 (44%), Gaps = 50/387 (12%)
Query: 12 KIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRL---MLYALNRSPPALIGLFIVIIFIL 68
++A L Y + F L++ + R W M+ L G+ ++++F+
Sbjct: 153 RMALTLAYSLFTFYWLYRGWLTFRTHYRRAGWTPRDDMVNRLRNHSWGKFGIVVLVLFLT 212
Query: 69 VGIFGPFLAPWKYNFFPTL-------YTS--------------HYDNVYLAPPGSKAVLE 107
+ +FG LAP T Y S ++++ P +
Sbjct: 213 MSLFGTTLAPSTVQQNITASYGNEVQYVSDDTGAVETIPAGEANFNSKSKGNPAQNVGVM 272
Query: 108 YYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
Y++ ++P G GRDL + ++ GA T+ +++ I I + +L LV+ YYGG V
Sbjct: 273 TYDDYGRFHPFGTLPNGRDLFTYMMGGAETTLMVTGIAIGMAGFIAALLALVSSYYGGTV 332
Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
D ++ L D +S P L+L I S V D ++ N G
Sbjct: 333 DLSVLTLADGIVSIPQLLLLIMVSVVFQDHW---------------------LKSVFNGG 371
Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
LLA++ + WP R RG L E+ +V+AA++ G + +H+LP ++G +
Sbjct: 372 LLLALVFG--LTTWPVLWRSLRGPALQVAEEEWVDAAKSFGQQPTVTMRKHMLPYVLGYL 429
Query: 288 LVYITLDFGGVVLMEAGLSFL--GLGATPPIADWGRIVYDGAQYFPRC-WWLVFYPGLVV 344
L+Y ++ GG+V+ A LSFL GLG TPP WGR + G Y W + PGL++
Sbjct: 430 LIYASMTVGGIVIAMASLSFLGNGLGITPPTPAWGRAISQGQPYVSSASWHIALIPGLII 489
Query: 345 LLTALGWNLLGDGLRDILDPKTRRSIE 371
++ G N LGDG+RD +DP++ E
Sbjct: 490 VVLVTGANALGDGIRDAIDPESEGGSE 516
>gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis]
Length = 337
Score = 152 bits (381), Expect = 5e-36
Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 49/346 (14%)
Query: 37 RSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNF-----------FP 85
R L W+ + L + A+IG ++ + IL+ IFGP ++ Y P
Sbjct: 27 RPSLTFWQDVRRRLFQHKGAMIGFVLLSLIILLAIFGPMVSKHSYKEQDLGRAKMPPKIP 86
Query: 86 TLYTSHYDNVYLAPPGSKAV-LEYYNNATI--YYPLGADHYGRDLLSLLLQGARTSFVIS 142
+ H+ L G+ ++ Y I Y+ G D GRDL + +G R S I+
Sbjct: 87 VIENVHW----LPFDGTDQYGVDQYEKRDIKEYFWFGTDDLGRDLWTRTWEGTRVSLYIA 142
Query: 143 IIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFI 202
++ + +G+ G ++ +YGG+VD ++ R+ ++ P LI+ I ++ + +
Sbjct: 143 LLAAAIDLVIGVAYGGISAFYGGRVDNIMQRIMEIINGIPYLIIVILMVIIMGSGIWS-- 200
Query: 203 SSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVE 262
+ +AM I W G +RI RG L + + YV
Sbjct: 201 -----------------------------ITLAMAITGWIGMSRIVRGQILKLKNQEYVL 231
Query: 263 AARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRI 322
A+R +G ++ +H++PN++GPI+V V EA LSF+GLG PP A G +
Sbjct: 232 ASRTLGATNTQLIVKHLIPNVMGPIIVMTMFTIPSAVFGEAFLSFIGLGIQPPFASLGSL 291
Query: 323 VYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
V DG + ++F P +V+ + L +NL+ DGLRD LDPK R+
Sbjct: 292 VNDGYKSIQTYPHMMFIPAVVISILILAFNLMADGLRDALDPKMRK 337
>pir||G75529 peptide ABC transporter, permease protein - Deinococcus radiodurans
(strain R1) >gi|6458041|gb|AAF09944.1|AE001896_9
(AE001896) peptide ABC transporter, permease protein
[Deinococcus radiodurans]
Length = 339
Score = 152 bits (381), Expect = 5e-36
Identities = 100/341 (29%), Positives = 161/341 (46%), Gaps = 46/341 (13%)
Query: 47 LYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVL 106
L L R+P A+ G IV++F L+ + P +A N L +Y KA+
Sbjct: 25 LRKLRRNPLAVTGFVIVLLFGLMALLAPLIAKPTGNCLRDLGMETQGQIYQPGFALKAIF 84
Query: 107 ----EYYNNATIYY---------------PLGADHYGRDLLSLLLQGARTSFVISIIVIM 147
E Y + + P G + G ++ L+ G RT+ +S I++
Sbjct: 85 ASPPECYKMERVSFAQEPAPASSVTGTFAPFGTVN-GYNIFYGLIWGTRTALKMSFIIVG 143
Query: 148 FGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPV 207
+ +GI++G ++G+YGG VD LI + ++ + P L+L + +L + + P+
Sbjct: 144 ITLSIGILIGAISGFYGGWVDGLIQGIINVIYALPPLVLTVTILTILRAKNPGGDPTGPI 203
Query: 208 IEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAI 267
I AM I W YAR+ RG L R+ YV+AARA+
Sbjct: 204 I-------------------------FAMCITGWATYARVIRGDILKTRQLEYVDAARAL 238
Query: 268 GLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV-YDG 326
G ++ RH++PN + + L V L A LSFLGLG ++WG+++ +
Sbjct: 239 GARDMRMILRHVVPNSLTTVFTLAVLALATVPLSVAALSFLGLGFESGYSEWGQLIDFAR 298
Query: 327 AQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
A P W+++ +P + ++L +L +NL GDGLRD LDPKTR
Sbjct: 299 AWLKPDYWYVLAFPAIFIVLFSLAFNLFGDGLRDALDPKTR 339
>gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borrelia burgdorferi]
Length = 349
Score = 152 bits (380), Expect = 7e-36
Identities = 104/378 (27%), Positives = 168/378 (43%), Gaps = 86/378 (22%)
Query: 34 EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYD 93
E+N S+LE + N+ A LF++ +I + I P L +KY+ T H D
Sbjct: 9 EENNSKLERRAWSRFKENKL--AFGSLFVIGFYISIAILQPILPIYKYH---TQIVEHSD 63
Query: 94 NVYLAPPGSKAVLE-YYNNATIY------------------------------------- 115
PP +A E +YN +
Sbjct: 64 ----LPPSFQAAGELWYNKEKKFIEKLAKKEKREINEEELKKLEDIKRKIENEVQIIDKK 119
Query: 116 --------YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
Y LG D+ GRDLL L+QG++ S + I + +G ILG +AG++GG
Sbjct: 120 EVKIHKRVYLLGTDNLGRDLLVRLIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLP 179
Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
D++I + ++ + P L++ I A++ E+ ++ +F
Sbjct: 180 DKIITKTIEILYALPYLLIVIILMAIM--------------ERSIIGLF----------- 214
Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
+A+ V W AR+ RG + +++AA+ +G + I+ +H++PN IG I
Sbjct: 215 ------IALAFVSWLTVARVVRGQVQSLSSSEFIQAAKTLGATNQRIILKHLIPNSIGMI 268
Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
+++ T+ ++ EA LSFLGLG + P+ WG +V +G F W VF P +V+ +
Sbjct: 269 VIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQNGIATFVEYPWKVFIPAIVMTIF 328
Query: 348 ALGWNLLGDGLRDILDPK 365
L N LGDGLRD DPK
Sbjct: 329 LLFMNFLGDGLRDAFDPK 346
>pir||G72215 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4982326|gb|AAD36813.1|AE001813_5 (AE001813)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 152 bits (379), Expect = 9e-36
Identities = 97/339 (28%), Positives = 157/339 (45%), Gaps = 53/339 (15%)
Query: 33 MEKNRSR-LEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSH 91
+ KN++ + W+ ++ A+IG V+I I + I P++AP+ Y+ H
Sbjct: 2 LRKNKTESIGYWKAFWLRFKKNKMAVIGGVFVLILIALAILAPYIAPYPYD------EPH 55
Query: 92 YDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVP 151
Y + P + G D GRDL S +L R + +I +
Sbjct: 56 YIRAFEGPSKD-------------FIFGTDALGRDLFSRILYSLRNACIIGFGSQFVVLI 102
Query: 152 LGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKI 211
+G ILG VAG+ GG +D+ IM + D+ +FP + F+ +L L
Sbjct: 103 IGGILGAVAGFKGGWIDKFIMSIVDIMFAFPTFL----FNVILVTAL------------- 145
Query: 212 VLAIFALDVREAGNLGR-LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLP 270
GR L + +A+ + W G AR+ RG L + +VEAA+A G
Sbjct: 146 ---------------GRGLFTIFLAIGLTGWAGMARLVRGQVLYLKNSEFVEAAKAAGAS 190
Query: 271 TRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYF 330
T I+ +HILPN+IGPILV + G ++ E+GL+ +G+G PP+ WG ++ +G
Sbjct: 191 TFYIIRKHILPNMIGPILVNLAFGVPGAMMTESGLAVIGMGVRPPMPSWGNLIGEGIGMM 250
Query: 331 PRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTRRS 369
L+ +P + T + + L DGLRD +P++ S
Sbjct: 251 MAFPHLLIFPAVTFAFTLISFTFLADGLRDAFNPRSEIS 289
>gb|AAC69844.1| (AF076684) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 276
Score = 151 bits (377), Expect = 2e-35
Identities = 80/245 (32%), Positives = 131/245 (52%), Gaps = 31/245 (12%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG D YGRDL + ++ GAR++ ++++ ++ V +G+ LGL AGY G ++ L++R D+
Sbjct: 52 LGTDDYGRDLFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDV 111
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
LS P I+ IA ++ L +++++
Sbjct: 112 GLSIPEFIIMIALASFFQPSLWN-------------------------------LVISIT 140
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
++ W Y R+TR +E K Y++ A+ +PTRTIL RH+ P II I+V + +DFG
Sbjct: 141 LIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGK 200
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDG 357
++L + LSF+GLGA PP +WG ++ G + ++ P V+ +T L +NL GD
Sbjct: 201 IILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIMLIAPASVIAITILIFNLTGDA 260
Query: 358 LRDIL 362
LRD L
Sbjct: 261 LRDRL 265
>gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1]
Length = 308
Score = 150 bits (374), Expect = 4e-35
Identities = 103/329 (31%), Positives = 157/329 (47%), Gaps = 54/329 (16%)
Query: 43 WRLM---LYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAP 99
WR + ++ S +L+ L ++++F G GP WKY++ + TS AP
Sbjct: 30 WRAIARKFFSYKASVVSLVILILIVLFAFAG--GPL---WKYSY--AVSTSDLS----AP 78
Query: 100 PGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
P + +P G DH G DL++ +++G + S I+ V + +G I G V
Sbjct: 79 PSWE------------HPFGTDHLGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAV 126
Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
AGY GG D L+MR+ D+ + FP L +A AF++
Sbjct: 127 AGYVGGWADSLLMRIVDLIMIFPLLAVA------------AFLARQS------------- 161
Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
+ G G LL +V + + W AR+ R L+ R + +V AA+ G I+FRH+
Sbjct: 162 --QGGEHGWLLVALV-LATLSWTVLARVVRSVVLSLRTREFVIAAKIAGAGPVRIIFRHL 218
Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFY 339
LPN +GPI+V T+ +L E LS+LG G PP G ++ WL ++
Sbjct: 219 LPNTVGPIIVAATVLVASAILSETALSYLGFGVQPPDTSLGLLINQAQGAISTRPWLFYF 278
Query: 340 PGLVVLLTALGWNLLGDGLRDILDPKTRR 368
PGL ++L AL +GDGLR LDPK +R
Sbjct: 279 PGLFIILIALCVAFIGDGLRAALDPKQQR 307
>emb|CAC05749.1| (AL391751) putative peptide transport system integral membrane
protein [Streptomyces coelicolor]
Length = 305
Score = 149 bits (373), Expect = 5e-35
Identities = 95/325 (29%), Positives = 153/325 (46%), Gaps = 49/325 (15%)
Query: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
W + L R+P +I ++I I++ I+ P+L S P
Sbjct: 30 WTDAWHDLRRNPVFIISALVIIFLIVISIW------------PSLIAS-------GSPLK 70
Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
+ + + +P G + G D+ + + GARTS + I+ + LG +LG +AG+
Sbjct: 71 CDLAKAQEGSQPGHPFGFNGQGCDVYTRTVYGARTSVAVGILATLGVALLGSVLGGLAGF 130
Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
+GG D ++ R+TD+F + P ++ + +V+ + PVI IVL
Sbjct: 131 FGGGGDAVLSRITDIFFAIPVVLGGLVLLSVITSN-----TIWPVIGFIVL--------- 176
Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
+ WP +RI RGS +T ++ YV+AARA+G +L RHI PN
Sbjct: 177 ----------------LGWPQISRIARGSVITAKQNDYVQAARALGASNSRLLLRHIAPN 220
Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
+ P++V T+ G + +EA LSFLG+G PP WG + A Y + +P
Sbjct: 221 AVAPVIVVATIALGTYISLEATLSFLGVGLKPPSVSWGIDISSAAPYVRNAPHALLWPSG 280
Query: 343 VVLLTALGWNLLGDGLRDILDPKTR 367
+ +T L + +LGD +RD LDPK R
Sbjct: 281 ALAITVLAFIMLGDAVRDALDPKLR 305
>pir||D72300 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981606|gb|AAD36140.1|AE001766_6 (AE001766)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 367
Score = 148 bits (371), Expect = 8e-35
Identities = 107/390 (27%), Positives = 171/390 (43%), Gaps = 83/390 (21%)
Query: 29 KKDWMEKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPW---KYNF-- 83
K++ ME+ +W+L+ + + A+IG +++I + IF F AP+ KYN+
Sbjct: 3 KREQMEEKFYYASQWQLIWWRFRKHKLAVIGGVVLLIIYVFAIFCEFFAPYDPNKYNYRY 62
Query: 84 -------------------FPTLYTSHYD-----NVYLAPPGSKAVLEYYNNATIY---- 115
F YT D +Y ++++ Y
Sbjct: 63 PYAPPQRIHFFHEGKFIGPFVYGYTYTVDLETLRRIYKEDKSKIFKIKFFVRGDEYKFWG 122
Query: 116 ----------------YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
+ LG D GRD+LS ++ GAR S I +I + LG+ +G +
Sbjct: 123 IWKTNIHFIGVEDGHMFLLGTDSLGRDMLSRIIYGARISTSIGLIGVFLSFILGVAIGGI 182
Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
+GY+GG VD I R ++ S P + L +A SA LP
Sbjct: 183 SGYFGGAVDNFIQRTIEIIKSIPTIPLWLALSAALPQNWPP------------------- 223
Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
L +++ + + W AR+ R L+ RE+ +V AA+ +G I+FRH+
Sbjct: 224 ------LRVYFVIVIILSLTGWTDLARVVRSRFLSLREEDFVMAAKFMGASEARIIFRHM 277
Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG-----AQYFPRCW 334
LP+ + ++ ITL G++L E LSFLGLG PP+ WG ++ + +P W
Sbjct: 278 LPSFMSHLIASITLSIPGMILGETSLSFLGLGLRPPVISWGVLLQEAQNLTVVALYP--W 335
Query: 335 WLVFYPGLVVLLTALGWNLLGDGLRDILDP 364
L+ P + V+ T L +N +GDGLRD DP
Sbjct: 336 LLI--PVVFVITTVLCFNFVGDGLRDAADP 363
>dbj|BAB04288.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
Length = 277
Score = 148 bits (370), Expect = 1e-34
Identities = 92/319 (28%), Positives = 158/319 (48%), Gaps = 62/319 (19%)
Query: 46 MLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVY------LAP 99
M AL ++ I+ +F L+ I P++AP +D + L P
Sbjct: 5 MQIALKSQKTVVVCSVILFVFFLLAILAPWIAP-------------HDPIQVNLALKLLP 51
Query: 100 PGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
P + YPLG D GR LS LL GAR S + ++ + + +G+++G +
Sbjct: 52 PSWE------------YPLGTDQLGRCNLSRLLFGARVSLGFATLIFISSLGIGLLVGAI 99
Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
AGY GG +D ++MR + ++FP L+L + ++ +F
Sbjct: 100 AGYRGGWIDSVLMRFCEGVMAFPNLVLVLG----------------------LVGLFG-- 135
Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
L V++A+++V W YAR+ R ++ +E+ ++ AAR G I+ RHI
Sbjct: 136 -------PGLWQVVLALVMVQWVYYARMFRSMIVSLKEQNFITAARISGSSPWKIIRRHI 188
Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFY 339
+PN++ PI+V TL+ G ++ + LSFLGLG PP +WG ++++G + L+ Y
Sbjct: 189 IPNVLPPIVVIGTLEMGWAIMDISALSFLGLGIQPPTPEWGAMIHEGKSFIRSHPELMLY 248
Query: 340 PGLVVLLTALGWNLLGDGL 358
PG+++LL + +N+LG+ L
Sbjct: 249 PGIMILLVVMTFNVLGESL 267
>gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [Listeria monocytogenes]
Length = 344
Score = 148 bits (369), Expect = 1e-34
Identities = 93/339 (27%), Positives = 164/339 (47%), Gaps = 55/339 (16%)
Query: 50 LNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFP--TLYTSHYDNVYLAPP------- 100
+ ++ AL+ L ++ + I++ I GP+L+ N P + +N L P
Sbjct: 39 IRKNKAALVSLIVLALVIIMAIVGPYLS---QNLGPEHNINRQITENASLPPKVQGFENM 95
Query: 101 ----GSKAV----LEYYNNATI----YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMF 148
G +++ ++ Y I YY LG+D GRD + + G R S +I+++ +
Sbjct: 96 PFWNGHQSIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALC 155
Query: 149 GVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVI 208
+ +G+ GL++GY GG+VD + R+ ++ + P L++ I +L
Sbjct: 156 DLVIGVAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLIL-------------- 201
Query: 209 EKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIG 268
E G ++++I+A+ + W AR+ RG L + + +V A+ +G
Sbjct: 202 -------------EPG----IVSIIIAIAMTSWITMARVVRGQVLKRKNQEFVMASMTLG 244
Query: 269 LPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ 328
T IL +H++PNI G I++ I + EA LSF+GLG P A G +V DG +
Sbjct: 245 ESTPKILIKHLIPNISGIIIINIMFSIPSAIFFEAFLSFIGLGLPAPAASLGVLVNDGYK 304
Query: 329 YFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
+++ YP +V+ + + +NL+ DGLRD DPK R
Sbjct: 305 TLQVLPYMILYPCIVLCIIMIAFNLIADGLRDAFDPKMR 343
>gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T45530 probable
oligopeptide transport protein agaC [imported] -
Agrobacterium tumefaciens plasmid pTi15955
>gi|2665706|gb|AAB88466.1| (AF242881) agaC
[Agrobacterium tumefaciens]
Length = 275
Score = 146 bits (366), Expect = 3e-34
Identities = 99/322 (30%), Positives = 155/322 (47%), Gaps = 50/322 (15%)
Query: 48 YALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLE 107
+ L+R P L +V+ + V I GP +AP N LA AV
Sbjct: 4 FVLSRRPLIAASLIVVLAVLTVAILGPLIAP---------------NDPLAI-NQNAV-- 45
Query: 108 YYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
+ ++ + LG D +GRD+LS LL G R + ++++I + G G++ Y +
Sbjct: 46 -HQPSSAQHWLGTDEFGRDILSRLLIGIRPTMLVAVISTIIAAVGGTACGIIGAYSRPTI 104
Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
+MR D+ LSFPA I+LA+ A+ +G
Sbjct: 105 SFFVMRAVDIMLSFPA---------------------------ILLALLAVGFWRSGVAS 137
Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
L+V++ +I + P +AR+ + + L + +VEA A+G ++ R ILPNI+ P+
Sbjct: 138 --LSVVIGIIFI--PQFARVAQSAALQVISQEFVEAEHAMGARYLRVVMRAILPNILSPL 193
Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
+V TL +L+E+GLSFLGLG PP WG+++ Y + V +P L + LT
Sbjct: 194 VVQATLTIAAAILLESGLSFLGLGIVPPEPSWGQMIGTARGYLGQNPMYVVWPSLCLALT 253
Query: 348 ALGWNLLGDGLRDILDPKTRRS 369
L N+LGD LRD LDP+ R +
Sbjct: 254 VLAINVLGDALRDHLDPRLREN 275
>pir||B75142 oligopeptide transport integral membrane protein. PAB2363 -
Pyrococcus abyssi (strain Orsay)
>gi|5458362|emb|CAB49851.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT INTEGRAL MEMBRANE PROTEIN. [Pyrococcus abyssi]
Length = 306
Score = 146 bits (366), Expect = 3e-34
Identities = 97/322 (30%), Positives = 152/322 (47%), Gaps = 47/322 (14%)
Query: 58 IGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYP 117
+G IVII L+ +FGP + P+ + Y + N PG+ A L ++ TIY P
Sbjct: 18 VGFIIVIIMALIALFGPLITPFDNMGY---YPLKFGNTTYPKPGTPA-LPPMSSDTIYGP 73
Query: 118 ---------LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVD 168
LG D +GRD+ + L G R+SF+I I LG+++G +AGY GG +D
Sbjct: 74 EGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWID 133
Query: 169 ELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGR 228
E++M +T++ L P + L I +A LP R IE +++ + A
Sbjct: 134 EVLMMITNIMLVIPTMALLIIIAAYLPYRGVG-------IESVIIGLTA----------- 175
Query: 229 LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPIL 288
WP AR R TL+ + + ++ A+ GL I+F I+PNII +
Sbjct: 176 ------------WPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVF 223
Query: 289 VYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFP---RCWWLVFYPGLVVL 345
+ L FGG +L GL F+GLG T ++ G ++ + WW PGLV+
Sbjct: 224 MVFILQFGGSILAAVGLDFIGLGPTRGMS-LGIMLQQAVLWNAVTLGYWWWAIPPGLVIA 282
Query: 346 LTALGWNLLGDGLRDILDPKTR 367
+ G + GL ++ +P+ R
Sbjct: 283 ILITGLYFINTGLDEVFNPRLR 304
>sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKC
>gi|628768|pir||S39596 nikC protein - Escherichia coli
>gi|581141|emb|CAA51661.1| (X73143) NikC [Escherichia
coli] >gi|912461|gb|AAB18453.1| (U00039) nikC
[Escherichia coli] >gi|1789889|gb|AAC76503.1| (AE000423)
transport of nickel, membrane protein [Escherichia coli
K12]
Length = 277
Score = 145 bits (363), Expect = 7e-34
Identities = 85/247 (34%), Positives = 129/247 (51%), Gaps = 31/247 (12%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG DH GRD+ S L+ R S + ++ + LG+++G AG GG+VD+ MR+ DM
Sbjct: 54 LGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADM 113
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
F++FP IL+ F + V G L VI+A+
Sbjct: 114 FMTFPTSILSF---------------------------FMVGVLGTG----LTNVIIAIA 142
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
+ W YAR+ R ++ R++ +V A+R G + H+ +I +LV TLD G
Sbjct: 143 LSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGH 202
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDG 357
++L AG+SFLGLG T P A+WG ++ D QY +F+PGL + ++ + +NL+GD
Sbjct: 203 MMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDA 262
Query: 358 LRDILDP 364
LRD LDP
Sbjct: 263 LRDHLDP 269
>pir||T35981 probable peptide transport permease - Streptomyces coelicolor
>gi|4464266|emb|CAB37469.1| (AL035559) putative peptide
transport permease [Streptomyces coelicolor A3(2)]
Length = 317
Score = 144 bits (359), Expect = 2e-33
Identities = 91/312 (29%), Positives = 152/312 (48%), Gaps = 52/312 (16%)
Query: 57 LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
+ GL +++F+LV + P S D+V AP + + + +
Sbjct: 50 VFGLATLVLFVLVALTAPLTVG-----------SDVDSVTDAPG------QPLESPSGRF 92
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
PLG D +GR LL LL+ G+R S ++ ++ + V +G ++G+ AG++ G ++MR+TD
Sbjct: 93 PLGTDQFGRSLLGLLIWGSRVSLLVGLLAAVLSVLIGALIGITAGHFRGWYATVMMRITD 152
Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
FL P L+LAI + VL + +LG +++A+
Sbjct: 153 WFLVMPTLVLAIVLATVL----------------------------SRSLG---TIVLAI 181
Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
+ WP AR+ R TL + Y+E A+A+G I+ RH+LPN++ IL TL
Sbjct: 182 GVTTWPTTARLVRAQTLAVESRPYIERAKALGGGHWHIMSRHVLPNVMPLILAQTTLIIS 241
Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ---YFPRCWWLVFYPGLVVLLTALGWNL 353
+L EA L+FLGLG P + WG ++ D + WW + PG+ + + AL + L
Sbjct: 242 SAILAEATLAFLGLG-DPAVVSWGGLLQDAREAGSVSSGDWWYLVPPGIGIAVVALAFTL 300
Query: 354 LGDGLRDILDPK 365
G + +L+P+
Sbjct: 301 CGRAVEAVLNPR 312
>pir||T44599 oligopeptide transport system permease protein [imported] -
Rhizobium meliloti megaplasmid 2 (fragment)
>gi|4929437|gb|AAD33993.1|AF148072_1 (AF148072)
oligopeptide transport system permease protein
[Sinorhizobium meliloti]
Length = 289
Score = 143 bits (356), Expect = 5e-33
Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 34/252 (13%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG D GRD+LS ++ GAR S I ++ I LGI++G +AGY+GG D ++ RL ++
Sbjct: 65 LGTDRLGRDVLSRIIYGARISLTIGLLGITVSFVLGIVIGGLAGYHGGIFDLVVQRLIEV 124
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
S P++ L ++ +A++P + L + V +
Sbjct: 125 LQSIPSIPLWLSLAAIMPATWSPLLI-------------------------YLGITVILG 159
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
++ W G AR R L RE+ YV AA+ +G + I+ RH++P + ++ T+ G
Sbjct: 160 LLDWTGLARAVRSKLLALREEDYVLAAQLMGARSGRIIGRHLVPGFMSHLIATATISIPG 219
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQ-----YFPRCWWLVFYPGLVVLLTALGWN 352
++L E LSFLGLG PPI WG ++ + ++P WL+F P + V+L L +N
Sbjct: 220 MILGETALSFLGLGLRPPITSWGILLTEAKSVSVIAFYP---WLLF-PTIPVILVILAFN 275
Query: 353 LLGDGLRDILDP 364
LGDGLRD DP
Sbjct: 276 FLGDGLRDAADP 287
>pir||H75026 oligopeptide abc transporter, permease protein (appc) PAB1195 -
Pyrococcus abyssi (strain Orsay)
>gi|5459168|emb|CAB50654.1| (AJ248288) oligopeptide ABC
transporter, permease protein (appC) [Pyrococcus abyssi]
Length = 477
Score = 141 bits (353), Expect = 1e-32
Identities = 87/258 (33%), Positives = 128/258 (48%), Gaps = 35/258 (13%)
Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
Y +G D GRDL + L+ G R S +I I V + V G++ G+ + Y GG DE++MR
Sbjct: 250 YGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRF 309
Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
+ S P L + I ++ + L +IV
Sbjct: 310 QEFMASIPTLPILIMLASAFKGHVT------------------------------LGIIV 339
Query: 235 AMIIVW-WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITL 293
+++V+ W G AR++R L +E+ YVEAA A+G T I+F+HI+P ++ I L
Sbjct: 340 LLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIAL 399
Query: 294 DFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGA---QYFPRCWWLVFYPGLVVLLTALG 350
G VL EAGLS+LGLG P WG+I++D WW V PGL + L +L
Sbjct: 400 SVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLT 458
Query: 351 WNLLGDGLRDILDPKTRR 368
+ LLG L +L+P+ RR
Sbjct: 459 FVLLGTALDRVLNPRLRR 476
>pir||D70431 oligopeptide transport system permease - Aquifex aeolicus
>gi|2983881|gb|AAC07433.1| (AE000743) oligopeptide
transport system permease [Aquifex aeolicus]
Length = 331
Score = 141 bits (353), Expect = 1e-32
Identities = 87/249 (34%), Positives = 129/249 (50%), Gaps = 36/249 (14%)
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
Y LG D GRD+ S LL G R S +++I +G ++G ++GY+GGKVD LIMRL
Sbjct: 102 YLLGTDKLGRDVFSRLLYGGRYSLGVALIGTFTTFFIGALVGGISGYFGGKVDTLIMRLV 161
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
++ +S PA L ++ +V P L + G + +IV
Sbjct: 162 EILMSIPAFYLLLSLRSVFPLELSS--------------------------GEVFLIIVF 195
Query: 236 MI-IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
++ + W G AR+ RG L+ REK +V AA+ G + I+F+HILPN ++V T+
Sbjct: 196 ILSFLGWAGLARVVRGMVLSIREKEFVLAAKTYGASSLRIIFKHILPNTYFYLIVSATMS 255
Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ-----YFPRCWWLVFYPGLVVLLTAL 349
+L EA LS LGLG P+ WG ++ + ++P WL PG+ + LT L
Sbjct: 256 IPAFILGEASLSLLGLGIQEPVPSWGNMLSEVRNVSVLTFYP---WLA-SPGVAIFLTIL 311
Query: 350 GWNLLGDGL 358
+NLLGD L
Sbjct: 312 AFNLLGDAL 320
>pir||H71211 probable oligopeptide transport system permease protein appC -
Pyrococcus horikoshii >gi|3258404|dbj|BAA31087.1|
(AP000007) 474aa long hypothetical oligopeptide
transport system permease protein appC [Pyrococcus
horikoshii]
Length = 474
Score = 137 bits (341), Expect = 3e-31
Identities = 90/257 (35%), Positives = 125/257 (48%), Gaps = 33/257 (12%)
Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
Y LG D GRDL + L+ G+R S + I + V +GI G+ A Y+GG DEL+MR
Sbjct: 247 YGYLGTDDKGRDLFAGLVWGSRVSLAVGISTAVLSVLIGIFYGVAAAYFGGWTDELMMRF 306
Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
+ S P L + I L + H + +IVL LLAV
Sbjct: 307 QEFMASIPTLPILIL--------LGTYFGGHIQLWQIVL---------------LLAVF- 342
Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
W G AR+ R +E+ YVEAA A+G T I+F+H++P ++ + L
Sbjct: 343 -----GWVGIARVARSMAYQIKEQTYVEAAIALGAGTGRIIFKHMVPQLLPYAFAQMALS 397
Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYD---GAQYFPRCWWLVFYPGLVVLLTALGW 351
G VL EA LSFLGLG P WG+I++D WW V PG+ + L AL +
Sbjct: 398 VPGAVLAEASLSFLGLG-DPTQVTWGQILHDAQVAGAAVNGYWWWVIPPGIAIALVALTF 456
Query: 352 NLLGDGLRDILDPKTRR 368
L+G L +L+P+ RR
Sbjct: 457 VLIGTALDRVLNPRLRR 473
>pir||A70789 probable peptidetransport system permease - Mycobacterium
tuberculosis (strain H37RV) >gi|2960088|emb|CAA17986.1|
(AL022121) dppC [Mycobacterium tuberculosis]
Length = 266
Score = 137 bits (341), Expect = 3e-31
Identities = 88/284 (30%), Positives = 132/284 (45%), Gaps = 37/284 (13%)
Query: 84 FPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISI 143
FP+L+T+ D Y P S + + G D G D+ S + GAR S + +
Sbjct: 16 FPSLFTAA-DPTYADPSQSMLA------PSAAHWFGTDLQGHDIYSRTVYGARASVTVGL 68
Query: 144 IVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFIS 203
+ +G LG +AG+YG +D ++ R+TD+FL P L+ AI V+ R
Sbjct: 69 GATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRT----- 123
Query: 204 SHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEA 263
+ VI + + WP ARI RG+ L R YV A
Sbjct: 124 -------------------------VWTVIAILALFGWPQVARIARGAVLEVRASDYVLA 158
Query: 264 ARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV 323
A+A+GL IL RH LPN +GP++ T+ G ++ EA LS+LG+G + WG +
Sbjct: 159 AKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDI 218
Query: 324 YDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
++FYP + +T L + ++GD LRD LDP +R
Sbjct: 219 NVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRDALDPASR 262
>dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus]
Length = 295
Score = 136 bits (340), Expect = 3e-31
Identities = 95/308 (30%), Positives = 141/308 (44%), Gaps = 45/308 (14%)
Query: 56 ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
A+ GL+ ++ +L+ IF P LAP+ L PP + TI
Sbjct: 29 AMFGLWCLVFIVLITIFAPLLAPFD--------AQAQSGELLVPPS------WAPAGTID 74
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
Y LG D GRD+LS L+ G++ +F ++ + +G ++G++AG G + + L
Sbjct: 75 YFLGTDDLGRDILSRLIMGSQLTFGAAVAITAIAAVVGCLIGVLAGMTKGLLSSTLNHLL 134
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D +S P+L+LAI F A L G LLA+ +A
Sbjct: 135 DTVMSIPSLLLAIIFVAFLG---------------------------FGGFNILLAICLA 167
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
+I P + R + TE EK Y+ AAR G +L+ ILPNI+ I ITL
Sbjct: 168 LI----PRFIRSVYIAVHTEVEKDYIMAARLDGANDFYLLWSSILPNILTVIAAEITLAL 223
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
+L L FLGLGA P +WG I+ D + W V PGL ++ T + NL+G
Sbjct: 224 SAAILDITALGFLGLGAQAPSTEWGAILGDSVELIYIAPWTVTLPGLTIMFTVITLNLVG 283
Query: 356 DGLRDILD 363
+G+R L+
Sbjct: 284 EGVRQALN 291
>gb|AAB38742.1| (U78885) transport system permease homolog [Listeria monocytogenes]
Length = 335
Score = 135 bits (337), Expect = 8e-31
Identities = 88/331 (26%), Positives = 159/331 (47%), Gaps = 55/331 (16%)
Query: 50 LNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPT--LYTSHYDNVYLAPP------- 100
+ ++ AL+ L ++ + I++ I GP+L+ N P + +N L P
Sbjct: 39 IRKNKAALVSLIVLALVIIMAIVGPYLSQ---NLGPKHDINRQITENASLPPKVQGFENM 95
Query: 101 ----GSKAV----LEYYNNATI----YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMF 148
G +++ ++ Y I YY LG+D GRD + + G R S +I+++ +
Sbjct: 96 PFWNGHQSIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALC 155
Query: 149 GVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVI 208
+ +G+ GL++GY GG+VD + R+ ++ + P L++ I +L
Sbjct: 156 DLIIGVAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLIL-------------- 201
Query: 209 EKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIG 268
E G ++++I+A+ + W AR+ RG L + + +V A+ +G
Sbjct: 202 -------------EPG----IVSIIIAIAMTSWITMARVVRGQVLKLKNQEFVMASMTLG 244
Query: 269 LPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ 328
T IL +H++PNI G I++ I + EA LSF+GLG P A G +V DG +
Sbjct: 245 ESTPKILIKHLIPNISGIIIINIMFSIPSAIFFEAFLSFIGLGLPAPAASLGVLVNDGYK 304
Query: 329 YFPRCWWLVFYPGLVVLLTALGWNLLGDGLR 359
+++ YP +V+ + + +NL+ DGLR
Sbjct: 305 TLQVLPYMILYPCIVLCIIMIAFNLIADGLR 335
>sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1282C
>gi|7442464|pir||D70729 probable peptide transport
system permease - Mycobacterium tuberculosis (strain
H37RV) >gi|3261616|emb|CAB01002.1| (Z77164) oppC
[Mycobacterium tuberculosis]
Length = 291
Score = 134 bits (335), Expect = 1e-30
Identities = 85/316 (26%), Positives = 149/316 (46%), Gaps = 48/316 (15%)
Query: 52 RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
R+ A+ L +++ + P L P+ Y+ N L PPG+K
Sbjct: 17 RNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDF-------NALLQPPGTK-------- 61
Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
+ LG + G+DLL+ L+G + S +I + V + + +G ++GY+GG D +
Sbjct: 62 ----HWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTL 117
Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
M + D+ L P+ IL A++ R + N ++
Sbjct: 118 MWVVDLLLVVPSFILI----AIVTPRTK-------------------------NSANIMF 148
Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
+++ + W +R+ RG T++ RE+ ++ AAR +G+ +R I+ H++PN+ +++
Sbjct: 149 LVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRRIIVGHVVPNVASILIIDA 208
Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
L+ +L E GLSFLG G PP G ++ DG W+ +P +++L +
Sbjct: 209 ALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTASATAFPWVFLFPASILVLILVCA 268
Query: 352 NLLGDGLRDILDPKTR 367
NL GDGLRD LDP +R
Sbjct: 269 NLTGDGLRDALDPASR 284
>gi|10954709 hypothetical ABC-transporter gene~similar to dppC gene
[Agrobacterium rhizogenes] >gi|8918709|dbj|BAA97774.1|
(AB039932) hypothetical ABC-transporter gene~similar to
dppC gene [Agrobacterium rhizogenes]
>gi|10567373|dbj|BAB16182.1| (AP002086) hypothetical
ABC-transporter gene~similar to dppC gene [Agrobacterium
rhizogenes]
Length = 305
Score = 134 bits (333), Expect = 2e-30
Identities = 82/243 (33%), Positives = 115/243 (46%), Gaps = 31/243 (12%)
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
Y LG D GRD+L L G S I + ++ +G LGL+AG+ GG +D +IMRLT
Sbjct: 82 YVLGTDQLGRDVLMRCLVGLCYSLFIGVTTVILMFIVGCSLGLLAGFRGGWLDTVIMRLT 141
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D LS P +ILAI V S P + I+L + G G
Sbjct: 142 DAQLSIPMIILAITILGV----------SRPTVPAIILVL--------GLSG-------- 175
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
WP YAR+ R L ER + YV R +G I+ + P ++ PI LD
Sbjct: 176 -----WPLYARVARSVALGERNRGYVLGERVLGASDLRIMLLFVAPVVLPPIAFVAVLDI 230
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
+++ E+ L FLGLG PP +G ++ D +Y WW+ PGL +L++ NL+G
Sbjct: 231 ARMMIFESILGFLGLGVQPPTPTFGNVIADSRKYLLNAWWIATMPGLFMLISLTCLNLMG 290
Query: 356 DGL 358
L
Sbjct: 291 SAL 293
>sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TQ
>gi|1486421|emb|CAA92399.1| (Z68203) OppC homologue
[Rhizobium sp.] >gi|2182647|gb|AAB91870.1| (AE000098)
Y4tQ [Rhizobium sp. NGR234]
Length = 291
Score = 134 bits (333), Expect = 2e-30
Identities = 80/250 (32%), Positives = 125/250 (50%), Gaps = 32/250 (12%)
Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
G D+ GRD+ + + GAR S ++ ++ + G+++G++AGY D +IMR+ D
Sbjct: 72 GTDNLGRDVFARTIYGARISLIVGLLSAVCAAVCGLLIGVIAGY-SRTFDNIIMRVMDGL 130
Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
+S P +LAIA ++ +G L IVA+ I
Sbjct: 131 MSIPTFLLAIALLSLT----------------------------GPGIGIL---IVAIAI 159
Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
P R+ R L+ R + YVEAA G +L+RHILP+ I P++V
Sbjct: 160 PETPAVTRLVRSVVLSVRSRPYVEAALCGGARLPRVLWRHILPSTIPPLMVQSATVCASA 219
Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGL 358
++ EAGLSF+G+G I WG ++ + + +F PGL + +T L NLLGDGL
Sbjct: 220 IMTEAGLSFIGVGVPSEIPSWGNMIANSRLFLAIAPLTIFAPGLCLAVTVLAVNLLGDGL 279
Query: 359 RDILDPKTRR 368
RD+ DP+++R
Sbjct: 280 RDMFDPRSKR 289
>gb|AAG20459.1| (AE005118) oligopeptide transport permease protein; AppC
[Halobacterium sp. NRC-1]
Length = 386
Score = 133 bits (332), Expect = 3e-30
Identities = 93/337 (27%), Positives = 148/337 (43%), Gaps = 49/337 (14%)
Query: 34 EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYD 93
+K R R WR ++ A++ L + + +VG+ GP L T+ +
Sbjct: 85 QKPRLRAFYWR----RFKKNQVAVVALGWLAVMFVVGVLGPLLIDPP--------TTQFT 132
Query: 94 NVYLAPPG-SKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPL 152
N + P G S V T YPLG G+ +L+L++ G R S + +I +F V +
Sbjct: 133 NQSVPPVGMSTTVGGVVKTGTWQYPLGTSAKGQGILTLVVYGMRVSMEVGLIATIFSVII 192
Query: 153 GIILGLVAGYYG----GKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVI 208
G +G VA + G++DEL+MR D+ FP +L + + + L I
Sbjct: 193 GSAVGAVAAFATSVGRGRIDELLMRYVDVQSVFPDFMLLLLLTYLFGSELWMII------ 246
Query: 209 EKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIG 268
++ F+ W G AR RG L + Y+ AA A G
Sbjct: 247 --LLFGFFS-----------------------WEGIARTVRGEALQRASEEYITAAEASG 281
Query: 269 LPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ 328
I+ +H++PN I++ T+ G +L EA L+FLG + P WGR + G
Sbjct: 282 ANMLYIVRQHLIPNSANSIIISATVGIPGFILGEASLAFLGF-SDPTTYSWGRTIATGQV 340
Query: 329 YFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPK 365
WW+ PG+ + LT L + +G+ LRD +DP+
Sbjct: 341 NLASAWWIATIPGVFLFLTVLSFYYVGESLRDAMDPR 377
>gb|AAC69839.1| (AF076683) oligopeptide transporter putative membrane permease
domain [Staphylococcus aureus]
Length = 289
Score = 133 bits (332), Expect = 3e-30
Identities = 84/335 (25%), Positives = 156/335 (46%), Gaps = 52/335 (15%)
Query: 45 LMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKA 104
++L L + A+I L I+++++ +G+ P + + N T
Sbjct: 2 IILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTA----------------- 44
Query: 105 VLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYG 164
+ + + LG DH GRD+L+ L+ R S + + + V +G ILG ++GY+
Sbjct: 45 --NKFAGMSFQHLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQ 102
Query: 165 GKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAG 224
G VD LIMR D+ L+FP+ ++ +A ++A+F +
Sbjct: 103 GFVDALIMRACDVMLAFPSYVVTLA----------------------LIALFGMGAEN-- 138
Query: 225 NLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNII 284
+I+A I+ W + R+ R S + +V A+ IG+ I+ +HI+P +
Sbjct: 139 -------IIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMKIIHKHIMPLTL 191
Query: 285 GPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVV 344
I + + ++L +G SFLGLG P A+WG ++ + + ++F PG+ +
Sbjct: 192 ADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTHPEMMFAPGIAI 251
Query: 345 LLTALGWNLLGDGLRDILDPKTRRSIEFKVKKQKK 379
++ + +N L D L+ +DP R S + K++ KK
Sbjct: 252 VIIVMAFNFLSDALQIAIDP--RISSKDKLRSVKK 284
>dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
halodurans]
Length = 302
Score = 131 bits (327), Expect = 1e-29
Identities = 77/253 (30%), Positives = 122/253 (47%), Gaps = 32/253 (12%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG D+ GRD+ L+ G R S I ++V + +GI++GL++GYYGG +D + MR D
Sbjct: 79 LGTDYGGRDVFGQLIIGTRNSITIGLLVTLMSGTIGILIGLISGYYGGTIDNIFMRAVDF 138
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
F+ P L++ I F A++P K + F+L M
Sbjct: 139 FMILPNLMIIIVFVALVP--------------KYSIVSFSL----------------IMT 168
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
+ W G AR+ R L ERE YV+A++ +G I+F +LPN+ I+V +TL+
Sbjct: 169 LFLWMGIARMIRSKALRERELDYVQASKTLGSSDLKIMFTQVLPNLSSLIIVTMTLNLAA 228
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIV--YDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
+ +E+GLSFLG G G ++ Q WW+ +++ + L N +G
Sbjct: 229 NIGIESGLSFLGFGFPESTPSLGTLISYATNPQTLEHRWWIWLPAAILIFVLMLSINNVG 288
Query: 356 DGLRDILDPKTRR 368
L+ D + RR
Sbjct: 289 QALKRATDARQRR 301
>gb|AAC18098.1| (AF058302) membrane component of putative ABC transporter
[Streptomyces roseofulvus]
Length = 274
Score = 131 bits (326), Expect = 1e-29
Identities = 82/243 (33%), Positives = 117/243 (47%), Gaps = 31/243 (12%)
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
+PLGADH GRDL + ++ G S + + GV G LG VAG G VD ++MR+
Sbjct: 56 HPLGADHVGRDLYARVVHGTARSLGTAFAAVALGVLAGGALGAVAGVAGRAVDAVVMRVV 115
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D+ L+ P L+L++A + L F ++ ++ A+ G +G
Sbjct: 116 DVLLAVPGLLLSLAVVSAL-----GFGTA-----QVACAV------GVGTVG-------- 151
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
G AR++R R YVEAAR G+ IL RHI+PN P+L +
Sbjct: 152 -------GIARVSRAQVRRVRGGEYVEAARLAGVAGPLILLRHIVPNAAPPVLALAVTEC 204
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
G VL A L FLG GA PP +WG ++ G Y WWL PGLV++ + + +G
Sbjct: 205 GTAVLGVASLGFLGFGAPPPAPEWGALISTGRDYLVSAWWLTTLPGLVLVALVVALHRVG 264
Query: 356 DGL 358
L
Sbjct: 265 RAL 267
>pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain Orsay)
>gi|5458957|emb|CAB50444.1| (AJ248287) ABC TRANSPORTER
[Pyrococcus abyssi]
Length = 309
Score = 131 bits (326), Expect = 1e-29
Identities = 88/319 (27%), Positives = 146/319 (45%), Gaps = 41/319 (12%)
Query: 59 GLFIVIIFILVGIFGPFLAPWK-----YNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNAT 113
G+ ++ F+L I GP P+ Y + Y + L P + + Y T
Sbjct: 20 GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKT 79
Query: 114 I--YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
I + LG D G+DL + L+ G RTS I+++ + G LGI +GLV+GY GG VDEL+
Sbjct: 80 IEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELL 139
Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
M ++ L P+++L I +A L R P ++ +++ +
Sbjct: 140 MMFVNIMLVIPSIVLLILVAAFLEAR-------SPEVQALIIGLTN-------------- 178
Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
WP AR R TL+ + + +V ++ +GL I+F I+PN+I I +
Sbjct: 179 ---------WPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAG 229
Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIA---DWGRIVYDGAQYFPRCWWLVFYPGLVVLLTA 348
L G +L A L F+GLG T ++ + + A F WW + PGL++ L
Sbjct: 230 ILQVSGAILASATLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFI-PPGLIITLII 288
Query: 349 LGWNLLGDGLRDILDPKTR 367
+ G+ ++ +P+ R
Sbjct: 289 TALFFVNLGMEEVFNPRLR 307
>pir||H72536 probable oligopeptide transport system permease protein APE1581 -
Aeropyrum pernix (strain K1) >gi|5105268|dbj|BAA80581.1|
(AP000062) 527aa long hypothetical oligopeptide
transport system permease protein [Aeropyrum pernix]
Length = 527
Score = 129 bits (322), Expect = 4e-29
Identities = 81/257 (31%), Positives = 123/257 (47%), Gaps = 35/257 (13%)
Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
Y LG D GRDL LL G R + ++ ++ V G + G+V+GY GG DE+++R
Sbjct: 303 YGLLGTDDQGRDLFQGLLYGTRWALIVGLLTSAITVVFGSLYGIVSGYLGGIADEVMLRF 362
Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
+ S PAL L I F+A++ GN+ ++ +IV
Sbjct: 363 AQIIYSLPALPLLILFAAII----------------------------GGNIWVIIFLIV 394
Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
A WPG A +TR + + YVEAA A G T I+ ++ P ++ + + L
Sbjct: 395 AFS---WPGIAFVTRSMAFQIKSEPYVEAAIASGAGTVRIVLLYLAPQVLPYMFASMALS 451
Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVY---DGAQYFPRCWWLVFYPGLVVLLTALGW 351
G V+ EA LSFL LG P + WG+I++ D WW V PGL + + + +
Sbjct: 452 VPGAVIAEASLSFLNLG-DPDLVTWGKILFEAQDAGAALNGYWWWVIPPGLAIAVVGMTF 510
Query: 352 NLLGDGLRDILDPKTRR 368
+G+ L IL+PK +R
Sbjct: 511 VFIGNALDAILNPKLKR 527
>pir||D82170 peptide ABC transporter, permease protein VC1682 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656198|gb|AAF94832.1| (AE004246) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 295
Score = 128 bits (318), Expect = 1e-28
Identities = 94/308 (30%), Positives = 143/308 (45%), Gaps = 45/308 (14%)
Query: 56 ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
A+ GL+ ++ LV I P++AP+ P +++S V L PP + T+
Sbjct: 29 AMFGLWSLLFIALVTILSPWIAPYD----PQMHSS----VLLLPPS------WEPEGTVD 74
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
Y LG D GRD+LS L+ G+ S ++++ + +G +G +AG G + + +
Sbjct: 75 YFLGTDDLGRDILSRLIDGSLFSIGAAVLITLIATLVGGTIGALAGMTKGLLSSTLNHIL 134
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D +S P+L+LAI F A L AG LLA+ +A
Sbjct: 135 DTVMSIPSLLLAIIFVAFLG---------------------------AGEFNILLAIGLA 167
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
+I P + R + E EK YV AAR G +L+ I PNI+ I+ IT+
Sbjct: 168 LI----PRFIRSVYVAVHNEVEKDYVMAARLDGANEFYLLWHSIFPNILPIIVAEITMAL 223
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
+L L FLGLGA P +WG ++ D + W V PGL ++ T + NL+G
Sbjct: 224 SIAILDITALGFLGLGAQSPSTEWGAMLGDSVELIYIAPWTVTLPGLAIMFTVVVINLVG 283
Query: 356 DGLRDILD 363
DG R L+
Sbjct: 284 DGARQALN 291
>gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus solfataricus]
Length = 290
Score = 125 bits (312), Expect = 7e-28
Identities = 86/315 (27%), Positives = 147/315 (46%), Gaps = 50/315 (15%)
Query: 58 IGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYP 117
+GL I + +IL+ IFG + P Y+ P+ T +++ P S Y
Sbjct: 21 VGLIITVFYILIAIFGQIIFPKTYSLPPSPTT-----IFMPPQLSN----------FYLI 65
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
G + +L ++QGA++ IS + +F +GI++G++AGY GG +D ++M +TD+
Sbjct: 66 FGTGPFAESILVQIIQGAKSVIEISFLAGLFATLIGIVVGIIAGYLGGIIDNILMGITDI 125
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
L+ P+LIL I + AF +S+P+ ++L+I +
Sbjct: 126 ILTLPSLILIIII-------VSAFKTSNPIFLSLILSITS-------------------- 158
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
W G AR R L R VE R +GL + I+FR ++P + I ++ +
Sbjct: 159 ---WAGLARAVRSQVLVIRNSPAVEVLRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEA 215
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYD----GAQYFPRCWWLVFYPGLVVLLTALGWNL 353
V E GL +LG+ P +WG ++ GA + + + +P +VV G L
Sbjct: 216 AVYAEVGLYYLGVLPYNP-NNWGAMIQQALSYGAAAGGKAIYYLAFPTIVVAGFMSGLIL 274
Query: 354 LGDGLRDILDPKTRR 368
L G+ +I +P+ RR
Sbjct: 275 LSYGIDEISNPRIRR 289
>pir||D71545 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328606|gb|AAC67792.1| (AE001293)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 281
Score = 124 bits (309), Expect = 1e-27
Identities = 91/303 (30%), Positives = 143/303 (47%), Gaps = 51/303 (16%)
Query: 57 LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
++G + + +L F P+L P FP ++ +P SKA +
Sbjct: 20 VLGCLTLAVLVLAATFLPYLYPDYERTFP-------EHALQSP--SKA-----------F 59
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
P G D+ GR +L+ LQG R S +I++ + V LG++ +A G KV +++ R+T+
Sbjct: 60 PFGTDNLGRCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTLALASGKKVADIMSRITE 119
Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
+ S P + + I ++L IF N G +L +I+AM
Sbjct: 120 ILFSIPRIPVII----------------------LLLVIF--------NHG-ILPLILAM 148
Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
I W ARI G L K +V +ARA+ T IL +H+LPN +GPI+ +
Sbjct: 149 TITGWIPIARIIYGQFLLLENKEFVLSARALQASTFHILRKHLLPNSLGPIISTLIFTIP 208
Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGD 356
V EA +SFLGLG PP A G +V +G WL F P +++ ++ +N +G+
Sbjct: 209 NAVYTEAFISFLGLGIQPPYASLGTLVKEGIHSLAYHPWLFFIPSFFMIIVSVSFNCIGE 268
Query: 357 GLR 359
GLR
Sbjct: 269 GLR 271
>dbj|BAA98410.1| (AP002545) oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 284
Score = 124 bits (308), Expect = 2e-27
Identities = 92/305 (30%), Positives = 144/305 (47%), Gaps = 51/305 (16%)
Query: 57 LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
++GL +II +L G L PW Y + TS D L P S+ +
Sbjct: 23 VLGLTTLIILML----GALLLPWFYQDYEQ--TSLKD--ILVSPCSR------------F 62
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
P G D GR + + L+G R S +I+ I + V +G++ VA G K+D L+MR T+
Sbjct: 63 PFGTDTLGRCMFARTLRGLRLSLLIATIATLIDVCVGLLWATVAISGGKKIDFLMMRTTE 122
Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
+ S P + + I ++L IF LLA+I+AM
Sbjct: 123 ILFSLPRIPIII----------------------LLLVIFHHG---------LLALILAM 151
Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
I W +RI G L + K +V +A+A+ T IL +H+LPN + PI+ +
Sbjct: 152 TITGWIPISRIIYGQFLLLKNKPFVLSAKAMHASTFHILKKHLLPNTLAPIISTLIFTIP 211
Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGD 356
+ EA +SFLGLG PP A G +V +G WL F+P L+++ ++ +NL+G+
Sbjct: 212 NAIYTEAFISFLGLGIQPPQASLGTLVKEGINAIDYYPWLFFFPSLIMIALSISFNLIGE 271
Query: 357 GLRDI 361
G + +
Sbjct: 272 GAKTL 276
>pir||F72107 peptide ABC transporter, permease protein CP0567 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376471|gb|AAD18353.1| (AE001606) Oligopeptide
Permease [Chlamydophila pneumoniae CWL029]
>gi|7189479|gb|AAF38386.1| (AE002215) peptide ABC
transporter, permease protein [Chlamydophila pneumoniae
AR39]
Length = 284
Score = 122 bits (303), Expect = 7e-27
Identities = 91/305 (29%), Positives = 143/305 (46%), Gaps = 51/305 (16%)
Query: 57 LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
++GL +II +L G L PW Y + TS D L P S+ +
Sbjct: 23 VLGLTTLIILML----GALLLPWFYQDYEQ--TSLKD--ILVSPCSR------------F 62
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
P G D GR + + L+G R S +I+ I + V +G++ VA G K+D L+MR T+
Sbjct: 63 PFGTDTLGRCMFARTLRGLRLSLLIATIATLIDVCVGLLWATVAISGGKKIDFLMMRTTE 122
Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
+ S P + + I ++L IF LL +I+AM
Sbjct: 123 ILFSLPRIPIII----------------------LLLVIFHHG---------LLPLILAM 151
Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
I W +RI G L + K +V +A+A+ T IL +H+LPN + PI+ +
Sbjct: 152 TITGWIPISRIIYGQFLLLKNKPFVLSAKAMHASTFHILKKHLLPNTLAPIISTLIFTIP 211
Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGD 356
+ EA +SFLGLG PP A G +V +G WL F+P L+++ ++ +NL+G+
Sbjct: 212 NAIYTEAFISFLGLGIQPPQASLGTLVKEGINAIDYYPWLFFFPSLIMIALSISFNLIGE 271
Query: 357 GLRDI 361
G + +
Sbjct: 272 GAKTL 276
>pir||G81699 peptide ABC transporter, permease protein TC0473 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190514|gb|AAF39321.1| (AE002315) peptide ABC
transporter, permease protein [Chlamydia muridarum]
Length = 287
Score = 122 bits (302), Expect = 1e-26
Identities = 91/303 (30%), Positives = 138/303 (45%), Gaps = 51/303 (16%)
Query: 57 LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
L+G ++ + IL IF P L P FP N L P +
Sbjct: 26 LLGCTVLTVLILSAIFLPSLYPDYEKTFP--------NYALQAPNK------------LF 65
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
P G D+ GR +L+ LQG R S +I++ + V LG++ +A G K+ + + R+T+
Sbjct: 66 PFGTDNLGRCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTLALAGGKKIADFMSRITE 125
Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
+ S P + + I ++L IF N G +L +I+AM
Sbjct: 126 ILFSLPRIPVII----------------------LLLVIF--------NHG-ILPLILAM 154
Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
I W ARI L K +V +ARA+ T IL +H+LPN +GPI+ +
Sbjct: 155 TITGWIPIARIIYDQFLLLENKEFVLSARALQASTFHILRKHLLPNTLGPIISTLIFTIP 214
Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGD 356
V EA +SFLGLG PP A G +V +G WL F P +++ ++ +N +G+
Sbjct: 215 NAVYTEAFISFLGLGIQPPYASLGTLVKEGIHSLDYHPWLFFIPSFFMVIISVSFNCIGE 274
Query: 357 GLR 359
GLR
Sbjct: 275 GLR 277
>pir||C72282 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981774|gb|AAD36296.1|AE001778_17 (AE001778)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 282
Score = 121 bits (301), Expect = 1e-26
Identities = 84/314 (26%), Positives = 142/314 (44%), Gaps = 56/314 (17%)
Query: 60 LFIVIIF---ILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
+F + ++ I++ + GP+L+P+K D + PG Y + +
Sbjct: 17 IFAICVYAGLIILALVGPYLSPYK------------DPLAFVGPG-------YQPPSKEH 57
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
LG + +G+D+ + L+ G R+S + ++ +G+++G VAGY GG DEL+M T+
Sbjct: 58 WLGTNTFGQDIFTQLVYGLRSSLFVGVLGGTLATVIGLLIGFVAGYKGGWFDELLMMFTN 117
Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
+ + P L L I +A LP R IE I++ + A
Sbjct: 118 ILMVIPTLALLIIIAAYLPYR-------GVFIESIIIGLTA------------------- 151
Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
WP AR R TL+ + + +V+ AR I+F I+PN++ + + L FG
Sbjct: 152 ----WPWTARAVRAQTLSLKTREFVDLARITARKPMKIIFGEIMPNMMSYVFMVFILQFG 207
Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFP---RCWWLVFYPGLVVLLTALGWNL 353
G +L GL F+GLG T I+ G ++ + WW PG V+ L +
Sbjct: 208 GAILAATGLDFIGLGPTRGIS-LGIMMQQATLWNAIQLGMWWWAITPGAVITLMVATLYV 266
Query: 354 LGDGLRDILDPKTR 367
+ GL ++ +PK R
Sbjct: 267 MNAGLDEVFNPKLR 280
>pir||C71163 probable oligopeptide transport system permease protein AppC -
Pyrococcus horikoshii >gi|3256909|dbj|BAA29592.1|
(AP000002) 304aa long hypothetical oligopeptide
transport system permease protein AppC [Pyrococcus
horikoshii]
Length = 304
Score = 120 bits (299), Expect = 2e-26
Identities = 86/321 (26%), Positives = 144/321 (44%), Gaps = 46/321 (14%)
Query: 59 GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLA-------PPGSKAVLEYYNN 111
G ++I FI+ G+ GP P+ + LY + +A PP ++ + Y
Sbjct: 16 GFGMLIAFIIFGLIGPLFTPFASD---GLYYEQVGKIKIASYSAKTLPPMTRENITTYTG 72
Query: 112 --ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDE 169
+ + LG D G+DL + L+ G RTS ++ + + G GI +G V+GY GG VDE
Sbjct: 73 KKVEVLHILGTDKEGKDLYTELVYGLRTSLWVAFLAAIIGTITGITIGFVSGYKGGLVDE 132
Query: 170 LIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRL 229
L+M ++ L P+++L I +A L R P I+ +++ +
Sbjct: 133 LLMMFVNIMLVIPSIVLLILVAAYLEAR-------SPEIQALIIGLTN------------ 173
Query: 230 LAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILV 289
WP AR R TL+ + + +V ++ +G+ I+ ILPN+I I +
Sbjct: 174 -----------WPWVARSVRAQTLSLKNREFVHMSKIMGVGDLRIIVEDILPNMISYIFM 222
Query: 290 YITLDFGGVVLMEAGLSFLGLGATPPIA---DWGRIVYDGAQYFPRCWWLVFYPGLVVLL 346
L G +L A L F+GLG T ++ + + A F WW + PGL + L
Sbjct: 223 TGILQVSGAILASATLDFIGLGPTTMVSLGVILQKAIMHNALQFGWWWWFI-PPGLFITL 281
Query: 347 TALGWNLLGDGLRDILDPKTR 367
+ GL ++ +P+ R
Sbjct: 282 IITSLFFINLGLEEVFNPRLR 302
>emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi]
Length = 296
Score = 120 bits (299), Expect = 2e-26
Identities = 94/324 (29%), Positives = 148/324 (45%), Gaps = 44/324 (13%)
Query: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
WR + A+IG + ++ + + +FG LAP+ + + L PP
Sbjct: 16 WRDAWNVFRQDRMAMIGFYGFLLLLGLCLFGNTLAPYALD-------QQFLGYQLLPPSW 68
Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
Y + LG D GRDLLS LL GA +F +++V + +GI++G++AG
Sbjct: 69 SR----YGKCRFF--LGTDDLGRDLLSRLLSGAAPTFGPALLVTLAATLVGILIGMLAGV 122
Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
G ++ + D LS P+L+LA+ +V+A +
Sbjct: 123 THGLRSAVLNHILDPLLSIPSLLLAM----------------------VVIAFIGPQLTH 160
Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
A +LAV +A++ P R + E EK YV AAR G TR +L+ ++PN
Sbjct: 161 A-----MLAVWMALL----PRMVRTIYSAVHDELEKEYVTAARLDGASTRYLLWYAVVPN 211
Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
I+ ++ +T F +L A L FL LGA P +WG ++ + + W V PG
Sbjct: 212 ILPVLVSEVTRAFSIAILDIAALGFLNLGAQLPTTEWGVLLGNSLELVYAAPWTVMLPGT 271
Query: 343 VVLLTALGWNLLGDGLRDILDPKT 366
+ L+ L NLLGDG+R L +T
Sbjct: 272 AITLSVLIVNLLGDGIRRALLAQT 295
>pir||C72059 peptide ABC transporter, permease protein, probable CP0151
[imported] - Chlamydophila pneumoniae (strains CWL029
and AR39) >gi|4376892|gb|AAD18736.1| (AE001644)
Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
>gi|7189087|gb|AAF38033.1| (AE002176) peptide ABC
transporter, permease protein, putative [Chlamydophila
pneumoniae AR39] >gi|8978969|dbj|BAA98804.1| (AP002547)
oligopeptide permease [Chlamydophila pneumoniae J138]
Length = 579
Score = 118 bits (293), Expect = 1e-25
Identities = 70/245 (28%), Positives = 126/245 (50%), Gaps = 31/245 (12%)
Query: 125 RDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPAL 184
+DLL+ L+ G R + V++ I I + +GI++GLV+GY+GG VD ++ R T+++ + P L
Sbjct: 366 KDLLAALVFGIRIALVVAGIGITIALAIGIMIGLVSGYFGGTVDMILSRFTEIWETMPVL 425
Query: 185 ILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGY 244
+ + ++ + ++ ++L F+ W G+
Sbjct: 426 FILMLVISITQQKSL-------LLNTVLLGCFS-----------------------WTGF 455
Query: 245 ARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAG 304
+R R L +R++ YV AA +G I+ ILPN I P++ + ++ EAG
Sbjct: 456 SRYVRIEVLKQRDRGYVLAATNLGYSHYYIMVHQILPNAIVPVISLVPFAMMAMISCEAG 515
Query: 305 LSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDP 364
L+FLGLG A WG ++ +G FP +++ P +++ + + L+GDG+RD LDP
Sbjct: 516 LTFLGLGEESS-ASWGNLMREGVTGFPAESAVLWPPAIILTMLLIAIALIGDGVRDALDP 574
Query: 365 KTRRS 369
+ + S
Sbjct: 575 RLQDS 579
>sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
>gi|1075748|pir||D53290 oligopeptide transport protein
oppC - Lactococcus lactis subsp. lactis
>gi|149389|gb|AAA25166.1| (M76471) 'Sequence is part of
a 1.65-kb fragment of the lactose plasmid from
Lactococcus lactis subsp cremoris SK11 that facilitates
integration when plasmid is in L.lactis subsp. lactis.';
ORF >gi|308853|gb|AAA16166.1| (L18760) transmembrane
protein [Lactococcus lactis] >gi|495180|gb|AAB00536.1|
(U09553) transmembrane protein [Lactococcus lactis]
Length = 294
Score = 117 bits (291), Expect = 2e-25
Identities = 90/335 (26%), Positives = 155/335 (45%), Gaps = 51/335 (15%)
Query: 34 EKNRSRLEEWRLMLYALNRSPPALIG-LFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHY 92
+K+++ L + L + A+I +F+V +F++V I+ FL Y +
Sbjct: 4 KKHKNSLSLVHSIKEELKKDKLAMISTIFLVAVFLIVYIYSMFLKQSNY------VDVNI 57
Query: 93 DNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPL 152
+ YLAP T + LG D+ GRD++ +L+ AR SF I+ V + + +
Sbjct: 58 MDQYLAP------------LTNGHLLGTDNGGRDIIMMLMISARNSFNIAFAVTLITLVV 105
Query: 153 GIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIV 212
G ILG++ GY+GG+ D + MR TD + P++++ I F ++P +S +I +
Sbjct: 106 GNILGVITGYFGGRFDLIFMRFTDFVMILPSMMIIIVFVTIIPR-----FNSWSLIG--I 158
Query: 213 LAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTR 272
++IF+ W G R+ R T+TE + YV A++ G
Sbjct: 159 ISIFS-----------------------WIGTTRLIRARTMTEVNRDYVRASKTSGTSDF 195
Query: 273 TILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGA--QYF 330
I+FR I PN+ ++ TL F G + +E GLSFLG G G ++ + +
Sbjct: 196 KIMFREIWPNLSTLVIAEATLVFAGNIGLETGLSFLGFGLPAGTPSLGTMINEATNPETM 255
Query: 331 PRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPK 365
W +V+L+ L +G+ LR + D +
Sbjct: 256 TDKPWTWVPATVVILIVVLAIIFIGNALRRVADQR 290
>emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
Length = 322
Score = 116 bits (289), Expect = 3e-25
Identities = 85/305 (27%), Positives = 133/305 (42%), Gaps = 60/305 (19%)
Query: 59 GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNV--YLAPPGSKAVLEYYNNATIYY 116
G+F+ +F+ + +F LAP+ + YD Y P G +
Sbjct: 58 GIFLFALFLFMALFPSLLAPY----------APYDRFTPYEEPSGQ-------------H 94
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
LG + G D+LS L+ GA+ S + + +G ILGL +GY+ G VDEL+M TD
Sbjct: 95 LLGTNDIGNDILSELVYGAKVSLTVGFAAALVSTLIGTILGLCSGYFRGAVDELLMGFTD 154
Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
+ L P + L I A L + + PV+
Sbjct: 155 IVLIIPKIPLIIVLGAYLQPSIWILV---PVLG--------------------------- 184
Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
++ W AR+TR TL RE YV++AR +G ++ I+F ILPN+ +L L
Sbjct: 185 -LLSWESTARVTRSKTLQLRETGYVKSARCMGFSSQHIMFSDILPNLYHVLLPKFMLATA 243
Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIV---YDGAQYFPRCWWLVFYPGLVVLLTALGWNL 353
++ EA LSFLGL + + WG ++ + + WW PG+ + L + L
Sbjct: 244 SAMISEASLSFLGL-SDVSMKSWGTMLSFAFSRGGFIRDMWWWYLPPGICITLCVISIAL 302
Query: 354 LGDGL 358
+G G+
Sbjct: 303 IGFGI 307
>sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|628819|pir||S39587 peptide transport system permease
sapC - Salmonella typhimurium >gi|414210|emb|CAA52286.1|
(X74212) sapC [Salmonella typhimurium]
Length = 296
Score = 115 bits (285), Expect = 1e-24
Identities = 95/305 (31%), Positives = 136/305 (44%), Gaps = 44/305 (14%)
Query: 55 PALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATI 114
PA++GL+ L+ IFG ++AP+ + + L PP + +
Sbjct: 28 PAMVGLYGCAGLALLCIFGGWIAPYGID-------QQFLGYQLLPPS------WSRYGEV 74
Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
+ LG D GRD+LS LL GA + + IV + G++LG+VAG G ++ +
Sbjct: 75 SFFLGTDDLGRDVLSRLLSGAAPTVGGAFIVTLAATLCGLVLGVVAGATHGLRSAVLNHI 134
Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
D LS P+L+LAI IV+A + A + AV +
Sbjct: 135 LDTLLSIPSLLLAI----------------------IVVAFAGPHLSHA-----MFAVWL 167
Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
A++ P R E EK YV AAR G T IL+ ILPNI ++ IT
Sbjct: 168 ALL----PRMVRSVYSMVHDELEKEYVIAARLDGATTLNILWFAILPNITAGLVTEITRA 223
Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLL 354
+L A L FL LGA P +WG ++ D + W V PG + L+ L NLL
Sbjct: 224 LSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAITLSVLLVNLL 283
Query: 355 GDGLR 359
GDG+R
Sbjct: 284 GDGIR 288
>pir||C71510 probable oligopeptide permease - Chlamydia trachomatis (serotype
D, strain UW3/Cx) >gi|3328913|gb|AAC68078.1| (AE001321)
Oligopeptide Permease [Chlamydia trachomatis]
Length = 578
Score = 115 bits (284), Expect = 1e-24
Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 31/241 (12%)
Query: 125 RDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPAL 184
+DLL+ L+ G R + V+ + + + +GII+GL++GY+GGKVD L+ R+T+++ + P L
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVSIALFIGIIVGLLSGYFGGKVDMLLSRVTEIWETMPML 425
Query: 185 ILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGY 244
+ + A+ + +++ ++L F W
Sbjct: 426 FILMLVVAITQKK-------SLILDSVLLGCFG-----------------------WVSI 455
Query: 245 ARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAG 304
+R R TL +R YV AA + I+ ILPN+I P++ + ++ EAG
Sbjct: 456 SRYVRIETLKQRNLGYVLAATNLCYSHYHIMVHQILPNVIVPVISLLPFSMMAMISCEAG 515
Query: 305 LSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDP 364
L+FLGLG A WG ++ +G FP +++ P +++ L + ++GDG+RD LDP
Sbjct: 516 LTFLGLGEESS-ASWGNLLREGVTAFPSESAILWPPAIMLTLLLMAIAVIGDGIRDALDP 574
Query: 365 K 365
K
Sbjct: 575 K 575
>pir||F81668 peptide ABC transporter, permease protein, probable TC0763
[imported] - Chlamydia muridarum (strain Nigg)
>gi|7190788|gb|AAF39566.1| (AE002344) peptide ABC
transporter, permease protein, putative [Chlamydia
muridarum]
Length = 578
Score = 112 bits (278), Expect = 6e-24
Identities = 68/241 (28%), Positives = 121/241 (49%), Gaps = 31/241 (12%)
Query: 125 RDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPAL 184
+DLL+ L+ G R + V+ + + + +G I+GL++GY+GGK+D L+ R+T+++ + P L
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVTIALFIGTIVGLLSGYFGGKIDMLLSRVTEIWETMPML 425
Query: 185 ILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGY 244
+ + A+ + +++ ++L F W
Sbjct: 426 FILMLVVAITQKK-------SLILDSVLLGCFG-----------------------WVSI 455
Query: 245 ARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAG 304
+R R TL +R YV AA + I+ ILPN+I P++ + ++ EAG
Sbjct: 456 SRYVRIETLKQRNLGYVLAATNLCYSHYHIMVHQILPNVIVPVISLLPFSMMAMISCEAG 515
Query: 305 LSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDP 364
L+FLGLG A WG ++ +G FP +++ P +++ L + ++GDG+RD LDP
Sbjct: 516 LTFLGLGEESS-ASWGNLLREGVSAFPSESAILWPPAVMLTLLLMSIAVIGDGIRDALDP 574
Query: 365 K 365
K
Sbjct: 575 K 575
>pir||G72428 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980513|gb|AAD35123.1|AE001690_17 (AE001690)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 280
Score = 111 bits (276), Expect = 1e-23
Identities = 81/330 (24%), Positives = 145/330 (43%), Gaps = 58/330 (17%)
Query: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
+R M+ L ++ +IG I + F+ +GIFGP Y PT T Y+ PP S
Sbjct: 2 FRTMIRPLFKNKKFIIGFSIFLFFLFLGIFGPMF----YRVDPTEMTWDYEQ----PPSS 53
Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
+PLG D YGRD+L+ LL G R+S I + + + +G I+G +
Sbjct: 54 A------------HPLGTDTYGRDVLAQLLHGIRSSLYIGFLAAIISLVIGTIIGSFSAV 101
Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
G VD+++M +T++ L+ P++++AI ++ L R ++ ++L +F
Sbjct: 102 KRGIVDDVLMGITNIVLTTPSILIAILIASYLKVRSVEMVA-------VILGLFQ----- 149
Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
WP +AR R ++ + YV + G ++ ++P
Sbjct: 150 ------------------WPWFARAIRAQLMSVMSREYVYLSVMAGYSDLRLVIEDLIPT 191
Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIA-----DWGRIVYDGAQYFPRCWWLV 337
I + L G ++ EAGLS +GLG T I+ W ++ + + WW
Sbjct: 192 IATYAFMSFVLFINGGIMGEAGLSLIGLGPTQGISLGIMLQWA-VLMEAVR--RGLWWWF 248
Query: 338 FYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
PGL ++ ++ + ++ +P+ R
Sbjct: 249 VPPGLAIVAVTASLLVISTAMDEVFNPRLR 278
>emb|CAA68075.1| (X99740) oligopeptide transport system permease protein homolog
[Mycoplasma hominis]
Length = 424
Score = 111 bits (274), Expect = 2e-23
Identities = 75/291 (25%), Positives = 137/291 (46%), Gaps = 36/291 (12%)
Query: 80 KYNFFPTLYTSHYDNVYLAPPGSKA-VLEYYNNATIYYP---LGADHYGRDLLSLLLQGA 135
KYN + + ++ + + + A L+ +N +Y LG G D+ +
Sbjct: 157 KYNAYDLVVANYINGIISKNQITDAEYLKIFNEQKNFYSHVLLGTSSIGYDIWTTAWYAT 216
Query: 136 RTSFVISIIVIMFGVPLGIILGLVAGYYGGK-VDELIMRLTDMFLSFPALILAIAFSAVL 194
+ I++IV++ +GI +G G+Y GK +D +IMR+ ++FL+ P LI + F +++
Sbjct: 217 WRAIKIALIVVILEAIIGISIGAFLGFYAGKLIDTIIMRVIEIFLAPPTLIWILLFVSII 276
Query: 195 PDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLT 254
++++ + IV WPG+ ITR +T
Sbjct: 277 G-------------------------------ANEWSLVLTLTIVGWPGFVGITRMFIIT 305
Query: 255 EREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATP 314
+++ ++ AA+AIG+ T +F H LP IIG I I GV+L A L+FLG
Sbjct: 306 VKDEEFIIAAKAIGVGTPRRIFVHALPTIIGKIANNIVRSVPGVILWIASLAFLGFFKEK 365
Query: 315 PIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPK 365
+ G+++ + +Q W++ P +++L +L N + G+ D LDP+
Sbjct: 366 KDTNLGQMLIEASQEVGSNIWIIALPTIILLFLSLSLNFIALGVHDALDPR 416
>gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC-1) [Sulfolobus
solfataricus]
Length = 450
Score = 109 bits (271), Expect = 4e-23
Identities = 71/245 (28%), Positives = 119/245 (47%), Gaps = 37/245 (15%)
Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
Y +G D++GR L +L G + I ++ + V +G+ +G ++GY GG D +I +
Sbjct: 228 YGLMGTDYFGRPLDLGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSIIQWV 287
Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
T +FL+ PAL +A S V + VIE +++A +
Sbjct: 288 TLVFLALPALPFLVAVSFVAEPNI--------VIEALLIAFLS----------------- 322
Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
WP YA I R L+ + YVEA + +G+P+ + F H +P +I + Y+ L
Sbjct: 323 ------WPFYAIIARSMALSIKSNSYVEADKLLGIPSYRVFFTHFMPRLIPITVAYMVLG 376
Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPR----CWWLVFYPGLVVLLTALG 350
+L+ L+FLG+ A I WG I+ D A+ + WW V +PG +V++ A+
Sbjct: 377 VPAGILLAQTLAFLGI-APANIVTWGGIL-DAAETYQAQVNGWWWWVVFPGAMVVIVAIP 434
Query: 351 WNLLG 355
+ L+G
Sbjct: 435 FVLIG 439
>gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 292
Score = 108 bits (266), Expect = 2e-22
Identities = 80/285 (28%), Positives = 128/285 (44%), Gaps = 45/285 (15%)
Query: 90 SHYD--NVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIM 147
S YD +Y P G LE+ PLG + G+D+ L R S +I+++ +
Sbjct: 37 SPYDPIRIYQVPRGLPPSLEH--------PLGTNWLGQDVFWRLTFAVRNSLMIAVVTAL 88
Query: 148 FGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPV 207
F + + +G+++GY GG VD ++M + D + P LI+ I S +L D ++F
Sbjct: 89 FSRAIAVFVGILSGYKGGAVDRVLMTVGDTTMVLPFLIVLIVISMILRDWTKSFF----- 143
Query: 208 IEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAI 267
NLG LLA W AR+ R L+ RE+ + A
Sbjct: 144 -----------------NLGLLLAFFS------WAWDARVIRSQVLSLRERDFTFVAILS 180
Query: 268 GLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWG----RIV 323
G+ T I+++ +LP+++ I + + ME L++LGLG P + G R +
Sbjct: 181 GMSTLRIVYKQLLPHVLPIIFTTFINNMAWAIGMEITLAYLGLGIDPTVPTIGTMLQRAI 240
Query: 324 YDGAQYFPRCWWLVF-YPGLVVLLTALGWNLLGDGLRDILDPKTR 367
Y A + WWLV ++L AL W L + + LDP+ R
Sbjct: 241 YRQALFLGLWWWLVAPIVAAILLFVALYW--LSTSVSEYLDPRAR 283
>pir||B72284 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4981748|gb|AAD36272.1|AE001776_8 (AE001776)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 291
Score = 107 bits (264), Expect = 3e-22
Identities = 77/285 (27%), Positives = 126/285 (44%), Gaps = 41/285 (14%)
Query: 88 YTSHYD--NVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIV 145
Y S YD ++Y P G E+ P G + G+D+ L R S +I++I
Sbjct: 35 YVSPYDPVSIYQVPRGLPPSFEH--------PFGTNWLGQDVFWRLTFAVRNSLLIAVIT 86
Query: 146 IMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSH 205
F + II+G+V+GY GG +D+++M + D + P LI+ I S +L D ++F+
Sbjct: 87 AFFSRIIAIIVGIVSGYKGGALDQVLMTIGDTTMVLPILIVLIVISMILKDWARSFV--- 143
Query: 206 PVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAAR 265
NLG LLA W AR+ R L+ RE+ +V A
Sbjct: 144 -------------------NLGLLLAFFS------WAWDARVIRSQVLSVRERDFVRVAV 178
Query: 266 AIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYD 325
G+ T I+ + +LP+++ I + + ME L++LGLG P + G ++
Sbjct: 179 LSGMSTMKIVGKQLLPHVLPVIFTTFINNMSWAIGMEITLAYLGLGIDPTVPTLGTMLQR 238
Query: 326 G---AQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
F WW + P + +L + L + + LDP+ R
Sbjct: 239 AITRQALFLGLWWWLAAPIVTAILLFIALYWLSVSISEYLDPRAR 283
>gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC-2) [Sulfolobus
solfataricus]
Length = 536
Score = 106 bits (262), Expect = 5e-22
Identities = 64/251 (25%), Positives = 113/251 (44%), Gaps = 36/251 (14%)
Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
Y LG D+ G + + QG ++I+ + V +G + GL AGYYGGK+D+++
Sbjct: 303 YGVLGTDNNGASVFAEYSQGGIFDLELAILAGLAIVFIGAVFGLFAGYYGGKLDQILTSF 362
Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
TD L P L + I + + +F D+ +I+
Sbjct: 363 TDFILLLPGLAILIVLITIFQQ---------------IFTVFPKDI----------LIII 397
Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
++I+ WP +R RG L R +VEAA+A+G+ I+ +H+L ++ I+ + D
Sbjct: 398 VLVILSWPPTSRTIRGQVLQVRNMAFVEAAKALGMSNMEIIRKHVLRHVFPIIIAQLIFD 457
Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIV-------YDGAQYFPRCWWLVFYPGLVVLLT 347
V+ +E+ L FLG+G WG ++ D + WW + PG+ + L
Sbjct: 458 IPAVIGIESALDFLGIGIL-KFPTWGNMLGFSINASLDAPGF---AWWWILTPGIALFLL 513
Query: 348 ALGWNLLGDGL 358
+ +G+ +
Sbjct: 514 GVSLFYIGEAI 524
>sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|7442408|pir||G64877 peptide transport system
permease protein sapC - Escherichia coli
>gi|1279402|emb|CAA65939.1| (X97282) SapC protein
[Escherichia coli] >gi|1742105|dbj|BAA14845.1| (D90766)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1742114|dbj|BAA14853.1| (D90767)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1742123|dbj|BAA14862.1| (D90768)
Peptide transport system permease protein SapC.
[Escherichia coli] >gi|1787549|gb|AAC74374.1| (AE000227)
homolog of Salmonella peptide transport permease protein
[Escherichia coli K12]
Length = 296
Score = 105 bits (259), Expect = 1e-21
Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 44/304 (14%)
Query: 56 ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
A++GL+ ++ IFG + AP+ + + L PP + +
Sbjct: 29 AMVGLYGCAGLAVLCIFGGWFAPYGID-------QQFLGYQLLPPS------WSRYGEVS 75
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
+ LG D GRD+LS LL GA + + +V + G++LG AG G ++ +
Sbjct: 76 FFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGATHGLRSAVLNHIL 135
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D L+ P+L+LAI IV+A + A + AV +A
Sbjct: 136 DTLLAIPSLLLAI----------------------IVVAFAGPSLSHA-----MFAVWLA 168
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
++ P R E EK YV AAR G T IL+ ++PNI ++ IT
Sbjct: 169 LL----PRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRAL 224
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
+L A L FL LGA P +WG ++ D + W V PG ++++ L NLLG
Sbjct: 225 SMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMISVLLVNLLG 284
Query: 356 DGLR 359
DG+R
Sbjct: 285 DGVR 288
>gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae]
Length = 296
Score = 105 bits (259), Expect = 1e-21
Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 44/304 (14%)
Query: 56 ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
A++GL+ ++ IFG + AP+ + + L PP + +
Sbjct: 29 AMVGLYGCAGLAVLCIFGGWFAPYGID-------QQFLGYQLLPPS------WSRYGEVS 75
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
+ LG D GRD+LS LL GA + + +V + G++LG AG G ++ +
Sbjct: 76 FFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGATHGLRSAVLNHIL 135
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D L+ P+L+LAI IV+A + A + AV +A
Sbjct: 136 DTLLAIPSLLLAI----------------------IVVAFAGPSLSHA-----MFAVWLA 168
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
++ P R E EK YV AAR G T IL+ ++PNI ++ IT
Sbjct: 169 LL----PRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRAL 224
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
+L A L FL LGA P +WG ++ D + W V PG ++++ L NLLG
Sbjct: 225 SMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMISVLLVNLLG 284
Query: 356 DGLR 359
DG+R
Sbjct: 285 DGVR 288
>gi|10955048 ophC [Agrobacterium tumefaciens] >gi|7442467|pir||S77574
oligopeptide transport protein homolog ophC -
Agrobacterium tumefaciens plasmid pTiR10
>gi|1215733|gb|AAC44510.1| (AF242881) ophC
[Agrobacterium tumefaciens]
Length = 270
Score = 104 bits (257), Expect = 2e-21
Identities = 89/305 (29%), Positives = 133/305 (43%), Gaps = 54/305 (17%)
Query: 54 PPALIGLFIVIIFI--LVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
PP + L I+ +F+ + +F P +AP+ N + + +D PP + +L
Sbjct: 6 PPLSVMLAILAVFLCFICVVFAPLIAPYGLN---EIVGTSWD-----PPSASNLL----- 52
Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
G D GRDL S + GAR + +++ + ++ +G LGL+AG G +D +
Sbjct: 53 -------GTDMIGRDLFSRFVWGARITILVASLAVLIAFLIGSGLGLLAGLRKGWLDMAL 105
Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
R D+ +S P LILA+ +LP R AF IV I ++ L RLLA
Sbjct: 106 SRFVDLVMSMPTLILAMMLLTILP-RSVAF---------IVAIIALVEATRFFRLARLLA 155
Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
+A + R RG T T+ I+ ILPN I P+L +
Sbjct: 156 ADIAAL----DYSGRFLRGET------------------TQWIIRHEILPNAITPLLAEL 193
Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
L F VL + LSFLGLG PP+ DWG ++ + PG + + AL
Sbjct: 194 ALRFIFSVLFLSTLSFLGLGLQPPMTDWGSLIKENKDGLLFGITAALLPGAAIAVLALAV 253
Query: 352 NLLGD 356
L D
Sbjct: 254 TTLTD 258
>gb|AAC67219.1| (U78968) transmembrane transport protein DppC [Streptococcus
pyogenes]
Length = 274
Score = 103 bits (255), Expect = 3e-21
Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 32/249 (12%)
Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
G D GRD+ ++G S + ++ + GV + G++AG +D++I L D+F
Sbjct: 54 GTDGLGRDMFVRTIKGLYFSLQVGLLGALMGVFFATVFGVLAGLGNSLIDKIIAWLVDLF 113
Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
+ P LI I V+ Q VI+A +
Sbjct: 114 IGMPHLIFMILIFFVVGKGAQG-------------------------------VIIATAV 142
Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
WP AR+ R + K +V+ ++++G I+ HILP I I + L F V
Sbjct: 143 THWPFLARVIRNEVYDLKNKAFVQLSKSMGKTPYYIVRHHILPLIASQIFIGFILLFPHV 202
Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQYFP-RCWWLVFYPGLVVLLTALGWNLLGDG 357
+L EA ++FLG G + G I+ + A++ WWLV +PGL ++L ++ +G+
Sbjct: 203 ILHEASMTFLGFGLSAEQPSVGIILSEAAKHISLGNWWLVVFPGLYLILVVNAFDTIGES 262
Query: 358 LRDILDPKT 366
L+ + P+T
Sbjct: 263 LKKLFYPQT 271
>pir||A83389 probable permease of ABC transporter PA2060 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948068|gb|AAG05448.1|AE004632_7 (AE004632) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 338
Score = 102 bits (252), Expect = 7e-21
Identities = 73/250 (29%), Positives = 110/250 (43%), Gaps = 34/250 (13%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG D GRD+L+ ++ G R S + ++ + + LGI G V GYYGG +D R ++
Sbjct: 122 LGTDDQGRDVLARVIYGLRLSILFALGLTLASSLLGICAGAVQGYYGGWIDLFGQRFIEV 181
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
+ P L L I ++++ +G LLA+ M+
Sbjct: 182 WSGLPMLYLLIILASLVQP----------------------------GVGWLLAI---ML 210
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
+ W + R L R YV+AAR +GL ++FRHILPN + L ++ G
Sbjct: 211 LFSWTSLVDVVRAEFLRGRHLEYVKAARTLGLGDAGVMFRHILPNAMVATLTFLPFLLCG 270
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCW-WLVFYPGLVVLLTALGWNLLGD 356
V L FLG G P G +V G W L + L LL+ L + +G+
Sbjct: 271 AVTTLTALDFLGFGLPPGSPSLGELVGQGRDNLQAPWLGLTVFVVLATLLSLLVF--IGE 328
Query: 357 GLRDILDPKT 366
+RD DP+T
Sbjct: 329 AVRDAFDPRT 338
>pir||F82301 peptide ABC transporter, permease protein VC0618 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655051|gb|AAF93784.1| (AE004147) peptide ABC
transporter, permease protein [Vibrio cholerae]
Length = 341
Score = 101 bits (248), Expect = 2e-20
Identities = 99/343 (28%), Positives = 151/343 (43%), Gaps = 58/343 (16%)
Query: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLA---PWKYNFFPTLYTSHYDNVYLA- 98
W+L L + A+IG+ I+ +F L+ + P L P K P Y + A
Sbjct: 5 WKL----LRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKAN 60
Query: 99 PPGSKAVLEYYNNATIYYPLGADHY------GRDLLSLLLQGARTSFVISI---IVIMFG 149
P G A + T+ ADH GRD+ S + GAR S + I + F
Sbjct: 61 PDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCF- 119
Query: 150 VPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIE 209
L ++G+ AGY+GGK+D+ + ++ L P +P++
Sbjct: 120 --LATVIGVSAGYFGGKIDDFLTAAMNIMLVIP---------------------QYPLL- 155
Query: 210 KIVLAIFALDVREAGNLGRLLAVIVAMII--VWWPGYARITRGSTLTEREKLYVEAARAI 267
VLA F + EAG L +A+II W AR+ R T+ REK +V+AA +
Sbjct: 156 -FVLAAF---IGEAGPL------TIALIIGCTSWAWGARVVRSQTMALREKEFVKAAEVL 205
Query: 268 GLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYD-- 325
G + I+F ILPN+I + ++MEA +SFLGLG P WG ++Y+
Sbjct: 206 GESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG-DPNTISWGIMLYNVQ 264
Query: 326 -GAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
+ WW + P L + L G LL + +I +P+ R
Sbjct: 265 TSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLR 307
>pir||F71957 ABC transporter, permease - Helicobacter pylori (strain J99)
>gi|4154752|gb|AAD05812.1| (AE001461) ABC transporter,
permease [Helicobacter pylori J99]
Length = 338
Score = 98.7 bits (242), Expect = 1e-19
Identities = 73/244 (29%), Positives = 113/244 (45%), Gaps = 34/244 (13%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG D RD+L+ L+ G R S V I++ +F V +G+ LG GYYGG VD + RL+++
Sbjct: 120 LGTDDQARDVLARLVYGYRVSLVFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLSEI 179
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
+ + P L L I S+ AF S+ +I +VL
Sbjct: 180 WSAIPMLFLLIVISS-------AFNSNFWIILFLVL------------------------ 208
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
+ W G +++ R L R Y +AARA+G+ I+F H+LPN + + YI
Sbjct: 209 LFSWMGLSQVVRTEFLKARNMDYTKAARALGVNDLKIIFYHVLPNALVATITYIPFLMAA 268
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW-LVFYPGLVVLLTALGWNLLGD 356
+ L FLG G A G +V G +V + + +LL+ L + +G+
Sbjct: 269 SISTLVSLDFLGFGMPIGSASLGELVNQGKDNLTTPHLAVVAFVAISLLLSVLVF--IGE 326
Query: 357 GLRD 360
G+RD
Sbjct: 327 GVRD 330
>pir||C64551 oligopeptide ABC transporter, permease protein - Helicobacter
pylori (strain 26695) >gi|2313343|gb|AAD07318.1|
(AE000544) oligopeptide ABC transporter, permease
protein (oppC) [Helicobacter pylori 26695]
Length = 338
Score = 98.3 bits (241), Expect = 1e-19
Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 34/244 (13%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG D RD+L+ L+ G R S + I++ +F V +G+ LG GYYGG VD + RL+++
Sbjct: 120 LGTDDQARDVLARLVYGYRVSLIFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLSEI 179
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
+ + P L L I S+ AF S+ +I +VL
Sbjct: 180 WSAIPMLFLLIVISS-------AFNSNFWIILFLVL------------------------ 208
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
+ W G +++ R L R Y +AARA+G+ I+F H+LPN + + Y+
Sbjct: 209 LFSWMGLSQVVRTEFLKARNMDYTKAARALGVNDLKIIFYHVLPNALVATITYVPFLMAA 268
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW-LVFYPGLVVLLTALGWNLLGD 356
+ L FLG G A G +V G +V + + +LL+ L + +G+
Sbjct: 269 SISTLVSLDFLGFGMPIGSASLGELVNQGKDNLTTPHLAIVAFVAISLLLSVLVF--IGE 326
Query: 357 GLRD 360
G+RD
Sbjct: 327 GVRD 330
>sp|P45287|SAPC_HAEIN PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
>gi|1074013|pir||C64134 sapC protein homolog -
Haemophilus influenzae (strain Rd KW20)
>gi|1574488|gb|AAC23287.1| (U32837) peptide ABC
transporter, permease protein (sapC) [Haemophilus
influenzae Rd]
Length = 295
Score = 97.5 bits (239), Expect = 2e-19
Identities = 79/303 (26%), Positives = 127/303 (41%), Gaps = 44/303 (14%)
Query: 56 ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
AL +++I I +F +LAP+ N + L PP + + I
Sbjct: 28 ALFSFYLLIALIFTALFASYLAPYADN-------RQFIGQELMPPS------WVDRGKIA 74
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
+ G D GRD+LS L+ G R + +++V+ +G LG++AG G + +
Sbjct: 75 FFFGTDDLGRDILSRLIMGTRYTLGSALLVVFSVAIIGGALGIIAGLLKGIKARFVGHIF 134
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D FLS P L++A+ S ++ L A+FA LLA++
Sbjct: 135 DAFLSLPILLIAVVISTLMEPSLWN-------------AMFAT----------LLAIL-- 169
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
P + + E EK YV + G+ + +L ILPNI + + F
Sbjct: 170 ------PYFIHTIYRAIQKELEKDYVVMLKLEGISNQALLKSTILPNITVIYIQEVARAF 223
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
VL + LSF+ LGA P +WG ++ D + W V PG ++ T L +
Sbjct: 224 VIAVLDISALSFISLGAQRPTPEWGAMIKDSLELLYLAPWTVLLPGFAIIFTILLSIIFS 283
Query: 356 DGL 358
+GL
Sbjct: 284 NGL 286
>pir||E83419 probable permease of ABC transporter PA1808 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947792|gb|AAG05197.1|AE004607_3 (AE004607) probable
permease of ABC transporter [Pseudomonas aeruginosa]
Length = 339
Score = 96.7 bits (237), Expect = 4e-19
Identities = 71/249 (28%), Positives = 108/249 (42%), Gaps = 34/249 (13%)
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG D RD+L+ ++ G R S + ++ + + +G+ +G + GYYGG VD L R ++
Sbjct: 123 LGTDDQARDVLARVIYGFRVSILFALTLTVLSSLIGVTVGALQGYYGGWVDLLGQRFLEV 182
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
+ P L L I +LA F N LL + M+
Sbjct: 183 WSGLPVLYLLI-----------------------ILASFVQP-----NFWWLLGI---ML 211
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
+ W + R L R YV AARA+G+ I+FRHILPN + L ++ G
Sbjct: 212 LFSWMSLVDVVRAEFLRGRNLEYVRAARALGMRNSAIMFRHILPNAMISTLTFMPFILTG 271
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCW-WLVFYPGLVVLLTALGWNLLGD 356
+ L FLG G P G +V G W + + L V+L+ L + +G+
Sbjct: 272 AIGTLTSLDFLGFGLPPGAPSLGELVAQGKSNLQAPWLGISAFVVLAVMLSLLVF--IGE 329
Query: 357 GLRDILDPK 365
RD DP+
Sbjct: 330 AARDAFDPR 338
>pir||T35940 probable transport permease protein - Streptomyces coelicolor
>gi|4158199|emb|CAA22762.1| (AL035206) putative
transport permease protein [Streptomyces coelicolor
A3(2)]
Length = 312
Score = 96.3 bits (236), Expect = 5e-19
Identities = 66/256 (25%), Positives = 109/256 (41%), Gaps = 32/256 (12%)
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
+P G D GRDLL + G R S ++ + + +G +G AG GG VD +MR+
Sbjct: 86 HPFGTDDVGRDLLLRCVYGLRVSLLVGMAAALTATVVGTAVGATAGALGGWVDRGVMRVV 145
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D S P L+L I ++A+F V V+ +
Sbjct: 146 DALSSVPHLLLGI----------------------FIVAMFRPGV---------WPVVAS 174
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
+ + W ARI R L+ R + +++AA + G + RH+LP ++ + L
Sbjct: 175 VALTHWLSTARIVRAEVLSLRARPHIDAAVSGGASRWRVTVRHLLPGVLPQAALAAVLMV 234
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDG-AQYFPRCWWLVFYPGLVVLLTALGWNLL 354
+ E+ LSFLGLG A G ++ + WW +PGL +++ L L
Sbjct: 235 PHAMWHESALSFLGLGLPTHTASLGNLIQEARGSLLAGQWWPTLFPGLFIIVPTLAVAGL 294
Query: 355 GDGLRDILDPKTRRSI 370
R+ ++P+ R +
Sbjct: 295 AGAWRERINPRRRSEL 310
>gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus]
Length = 326
Score = 92.4 bits (226), Expect = 8e-18
Identities = 86/340 (25%), Positives = 150/340 (43%), Gaps = 66/340 (19%)
Query: 58 IGLFI---VIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATI 114
+G +I +I+F L+G+F P NF L PP + +L
Sbjct: 37 VGFYILLGIIVFSLIGVFYTPYNPSATNFPRDL-----------PPSPQHLL-------- 77
Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGK-VDELIMR 173
G D YG D+ S LL G + V + G + I++G+ AG Y +D ++
Sbjct: 78 ----GTDDYGHDIFSQLLVGGFPVIGVGFAVGLIGTLIAILIGVTAGLYAETIIDRILSA 133
Query: 174 LTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVI 233
+T +FL P ++ +IE I + AL + LG + ++
Sbjct: 134 ITQIFLIIPGIL---------------------IIELIGAYLGALQFK----LG-YITIL 167
Query: 234 VAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITL 293
+ + + W AR+ R L+ R + Y+ ++ IG +++F I+PN L +I
Sbjct: 168 LTLSLTGWAWGARVLRSLVLSLRRREYILSSDLIGESKLSVIFNQIIPN----NLPFIAS 223
Query: 294 DFGGVVLME-AGLSFL---GLGATPPIADWGRIVY---DGAQYFPRCWWLVFYPGLVVLL 346
+F + AG +F+ GLG+ + +WG ++Y G Y WW PGL++ L
Sbjct: 224 NFFFTAIYGIAGFTFIYYFGLGSLTQV-NWGTMLYWSLGGEAYLRGLWWWYIPPGLMIGL 282
Query: 347 TALGWNLLGDGLRDILDPKTR-RSIEFKVKKQKKMEEGEE 385
A + L+ G+ + +P+ R ++ +KK +K +E EE
Sbjct: 283 VAFSFALINIGIDRVANPRLRIWDVKKYMKKIEKTKEKEE 322
>sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMID
>gi|98017|pir||S11151 amiD protein - Streptococcus
pneumoniae >gi|47345|emb|CAA35215.1| (X17337) AmiD
protein [Streptococcus pneumoniae]
Length = 308
Score = 92.1 bits (225), Expect = 1e-17
Identities = 77/326 (23%), Positives = 140/326 (42%), Gaps = 47/326 (14%)
Query: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
W+ + + ++ L I++ IL+ P + K++F + + Y+ P
Sbjct: 30 WKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFS--KFDFNDVSKVNDFSVRYIKP--- 84
Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
NA ++ G D G+ L + GAR S +IS+I + + +G+ +G + G
Sbjct: 85 --------NAEHWF--GTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGI 134
Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
VD ++M + ++ + P L++ I + +
Sbjct: 135 -SKSVDRVMMEVYNVISNIPPLLIVIVLTYSIG--------------------------- 166
Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
AG +I AM + W G A + R L R+ Y A+R +G PT I+ ++I+P
Sbjct: 167 AG----FWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQ 222
Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
++ I+ +T + EA LSF GLG + GR++ D +Q +L + P
Sbjct: 223 LVSVIVTTMTQMLPSFISYEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLT 282
Query: 343 VVLLTALGWNLLGDGLRDILDPKTRR 368
++L +L ++G L D DP+T R
Sbjct: 283 TLVLVSLSLFVVGQNLADASDPRTHR 308
>emb|CAC12448.1| (AL445067) oligopeptide transport system, permease protein appC
related protein [Thermoplasma acidophilum]
Length = 318
Score = 88.9 bits (217), Expect = 9e-17
Identities = 81/323 (25%), Positives = 143/323 (44%), Gaps = 59/323 (18%)
Query: 51 NRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYN 110
++S I L ++IF ++GIF P Y F L PP S +L
Sbjct: 37 SKSKAGFILLVSIVIFSIIGIFYRPYNPEAYLFAKAL-----------PPNSVNIL---- 81
Query: 111 NATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDEL 170
G YG+D+ S L+ GA + +I+ V + G + + +GL+AG+ V+
Sbjct: 82 --------GTTGYGQDVFSQLIAGAAPTLMIAFSVGIAGTLISVFVGLLAGFSSPAVNGA 133
Query: 171 IMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLL 230
I + +FL P ++L + F F+ H +LG L
Sbjct: 134 INAIISIFLVVPGVLLIMLFGTY-------FLGIHQ------------------SLGYLP 168
Query: 231 AVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILV- 289
+I+ ++I W AR R TL+ ++ Y+ ++ IG +I+FR I+ I+ P++V
Sbjct: 169 TIII-LVITGWAFGARTFRSITLSIAKRDYILSSLLIGESRLSIIFRQIMRAIM-PVVVS 226
Query: 290 --YITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVY---DGAQYFPRCWWLVFYPGLVV 344
+ T +G + L + +LG+G + +WG ++Y + Y WW + P +++
Sbjct: 227 NFFFTSMYGAMGL--TFVEYLGVGNIEQV-NWGTMLYWAINNEAYLTGQWWWILPPSIMI 283
Query: 345 LLTALGWNLLGDGLRDILDPKTR 367
L + LL GL ++ +P R
Sbjct: 284 SLLMFSFILLNFGLDEMANPSLR 306
>emb|CAC17496.1| (AL450432) putative transport system integral membrane protein
[Streptomyces coelicolor]
Length = 284
Score = 87.4 bits (213), Expect = 3e-16
Identities = 78/309 (25%), Positives = 122/309 (39%), Gaps = 52/309 (16%)
Query: 52 RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
R PP L G +++ +L+ + GP +AP H LA P +
Sbjct: 21 RRPPLLTGALTLLV-LLLALLGPLVAP------------HSPTAQLAAP--------FQQ 59
Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
+ LG D GRD+ S +L G RT + ++ +G+ G++A ++ +L
Sbjct: 60 PDGRFLLGTDVLGRDVASRVLGGGRTIVLTALAGTAGAGAVGMTAGVLAAMVSRRLGDLT 119
Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
+R D PAL++ + +A P G A
Sbjct: 120 VRCVDALAVLPALLVVLVLAAGFP-------------------------------GSDAA 148
Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
++ A+ + P R+ R + T YVEAA A G R +L +LPNI GP L+
Sbjct: 149 LVTAVALATAPFSTRVLRAAADTVLHSGYVEAALARGDTRRAVLRHDVLPNIAGPALMDT 208
Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
L + + A FLGLG DWGR+V + P L+++L ++
Sbjct: 209 ALRLVASLHLTATAGFLGLGRGGAAPDWGRMVSENVPGATLAAAPFLAPALLLVLLSVCV 268
Query: 352 NLLGDGLRD 360
LL L D
Sbjct: 269 GLLAGRLAD 277
>gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
Length = 323
Score = 85.0 bits (207), Expect = 1e-15
Identities = 76/324 (23%), Positives = 135/324 (41%), Gaps = 66/324 (20%)
Query: 57 LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
L G+ I+++ +GI G F P+ S + L PP S +L
Sbjct: 21 LAGIVIILVDFAIGIVGAFWTPYP--------VSETFGISL-PPSSAHIL---------- 61
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMR-LT 175
G D +G D+LS+++ TS ++ I V + ++GL GYYGGK+ +I+ LT
Sbjct: 62 --GTDEFGHDVLSVMMASTLTSLIVGISVGALIAIISTLIGLFGGYYGGKISGVIIDILT 119
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
L+ P +IL + ++A+ + I L+ + V++
Sbjct: 120 ITALTIPGVILLVI--------IEAYFRAASSTINITLS--------------YIIVVIG 157
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIG---------- 285
+ I W A+ R L+ ++ Y+ A+R IG + I+F ILP+I+
Sbjct: 158 LAITSWAFGAKQIRAQVLSISKRDYIIASRLIGEKSWRIIFNQILPSILPLTVAQFLFGV 217
Query: 286 --PILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLV 343
IL IT +F GV + ++ LG + Y WW + +
Sbjct: 218 LYGILSLITAEFWGV--LPTNINNLGTMLF--------FISSNGAYLSNQWWWILGAIIP 267
Query: 344 VLLTALGWNLLGDGLRDILDPKTR 367
+++ G +L G+ + +DP+ +
Sbjct: 268 IMVLGAGLGILNIGIDEFIDPRLK 291
>pir||C72393 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980802|gb|AAD35390.1|AE001712_3 (AE001712)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 289
Score = 82.7 bits (201), Expect = 7e-15
Identities = 71/314 (22%), Positives = 129/314 (40%), Gaps = 54/314 (17%)
Query: 56 ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
A+ L +++ ++ IF P+ P+K+ PT PP + +L
Sbjct: 20 AVTVLTALVLLSILSIFSPY-DPYKWYVLPTNQ----------PPSLEHIL--------- 59
Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
G D G+D+ LL + S +++ I +F + I +G+++GY GG D ++M LT
Sbjct: 60 ---GTDGKGQDIFWLLTFSLKNSLILATIAAVFSRIIAITIGMLSGYLGGTTDRILMALT 116
Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
D F+ P L + S+++ + L S P++ +++ +F
Sbjct: 117 DTFMVMPVFPLLLLLSSLIKNYL-----SLPIL-GLIIGVFG------------------ 152
Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
W G AR+ R L+ RE+ +V ++ G+ T ++F +P +I I
Sbjct: 153 -----WAGDARVIRSMILSLREREFVVTSKFSGMRTFEVVFGDFVPYLIPVISGGFIGSM 207
Query: 296 GGVVLMEAGLSFLGLGAT--PPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNL 353
G + E L+ LG P + + + WW V P + +
Sbjct: 208 MGAIGFEIVLAILGFTRVEIPTLGSMFHWMINFQAMLLGYWWWVLTPIVTAVFLFTALYT 267
Query: 354 LGDGLRDILDPKTR 367
L + + LDP+TR
Sbjct: 268 LSLSINEYLDPRTR 281
>pir||A72421 oligopeptide ABC transporter, permease protein - Thermotoga
maritima (strain MSB8)
>gi|4980561|gb|AAD35167.1|AE001694_3 (AE001694)
oligopeptide ABC transporter, permease protein
[Thermotoga maritima]
Length = 287
Score = 80.0 bits (194), Expect = 5e-14
Identities = 74/313 (23%), Positives = 128/313 (40%), Gaps = 56/313 (17%)
Query: 58 IGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYP 117
I L +++ ++ F P+ P+ +N P H+ ++
Sbjct: 21 IVLLVLLTLSILSFFSPY-NPYLWNQVPRDLPPHWPHI---------------------- 57
Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
LG + G+D+ L R S V+S+I + + +I+G++AGY GG D ++ L+D
Sbjct: 58 LGTNSMGQDIFWKLTFAVRNSLVMSLIAGLVSRIIAMIVGMIAGYKGGAADRVLTFLSDS 117
Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
FL P I+ + ++++ RL S P+ LG LL V
Sbjct: 118 FLVIPLFIIIVLVASIVKGRL-----SLPM------------------LGLLLGVF---- 150
Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
W AR+ R L+ RE+ + A G +I+F+ LP +I I + +
Sbjct: 151 --GWAWDARVIRSQVLSLRERDFTYTALLSGSKALSIVFKEYLPFLIPLIFATLIGNMSW 208
Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQY---FPRCWWLVFYPGLVVLLTALGWNLL 354
+ ME L+ LG+ + I G ++ Y WW V P L + + L+
Sbjct: 209 AIGMEITLAILGV-SNLDIPTLGTMLQWSINYQALLLGYWWWVLTPVLTSIFLFIALYLI 267
Query: 355 GDGLRDILDPKTR 367
+ + LDP+ R
Sbjct: 268 SISISEYLDPRMR 280
>emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 308
Score = 77.3 bits (187), Expect = 3e-13
Identities = 67/326 (20%), Positives = 135/326 (40%), Gaps = 47/326 (14%)
Query: 43 WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
W+ + + L I++ +++ P A + +N + + + Y+ P
Sbjct: 30 WKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNI--NDFSKRYIWP--- 84
Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
NA ++ G D G+ L + GAR S +IS+I + + +G++LG + G
Sbjct: 85 --------NAEYWF--GTDKNGQSLFDGVGYGARNSILISVIATLINITIGVVLGAIWGV 134
Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
D++++ + ++ + P++++ I + L
Sbjct: 135 -SKAFDKVMIEIYNIISNIPSMLIIIVLTYSLG--------------------------- 166
Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
AG +I+A I W G A R L R+ Y A++ +G P I +++LP
Sbjct: 167 AG----FWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQ 222
Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
++ I+ ++ V E LSF G+G GR++ + + +L + P +
Sbjct: 223 LVSVIMTMLSQMLPVYVSSETFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLV 282
Query: 343 VVLLTALGWNLLGDGLRDILDPKTRR 368
++L +L ++G L D DP++ R
Sbjct: 283 TLILVSLPLYIVGQNLADASDPRSHR 308
>pir||B82876 oligopeptide transport system permease protein UU561 [imported] -
Ureaplasma urealyticum
>gi|6899567|gb|AAF30974.1|AE002154_10 (AE002154)
oligopeptide transport system permease protein
[Ureaplasma urealyticum]
Length = 332
Score = 76.9 bits (186), Expect = 4e-13
Identities = 75/311 (24%), Positives = 129/311 (41%), Gaps = 53/311 (17%)
Query: 52 RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
RS LIGL I+II ++ I PF P +K L+Y+ +
Sbjct: 71 RSFSGLIGLAIIIILFILAIIIPFTTGSPTELRP----------------NKRYLDYFTD 114
Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
I+ G D+ GRDL ++L G R S I+IIV + +G+ LG++ GY+
Sbjct: 115 GFIF---GTDNNGRDLWAMLWWGLRYSLGIAIIVTAIELVVGVTLGILMGYF-------- 163
Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
+MF I+ I +++ P I I+L I + ++ + +
Sbjct: 164 ----EMFDKIMTFIIKI-------------LTNVPTI--IILMILTIILKPSFGV----- 199
Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
+I A+ W A R R L+V A++ +G I+ + LP +I ++ +
Sbjct: 200 MIFAISFSGWIAMANQMRSQVKRARSFLWVAASKTLGTKAWKIIL-NFLPILIPMMITQL 258
Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
G +L E+ L+F+GL + P G ++ DG+ P +++
Sbjct: 259 VFSIPGAILAESSLAFIGL-SLPNTPTLGNLIADGSSIITLYPRFTLIPSFLLVCLVASI 317
Query: 352 NLLGDGLRDIL 362
L+G +D L
Sbjct: 318 QLVGGATQDAL 328
>gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
Length = 270
Score = 74.9 bits (181), Expect = 2e-12
Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 33/259 (12%)
Query: 87 LYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVI 146
L+ + Y L+ P +L + + I + G D+ GRD+ QGA TS I +
Sbjct: 20 LFIAGYGYATLSQPPEVNLLARHLSPDIQHWFGTDNLGRDVWLRCFQGAFTSLQIGVGAA 79
Query: 147 MFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHP 206
+ + +++ VA + ++D L+ +TD L+ P L+L
Sbjct: 80 LCSGVIALVMAAVARIH-PRLDLLVRLITDAMLAMPHLLL-------------------- 118
Query: 207 VIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARA 266
++L F L ++G VI A+ + WP A I R + Y+
Sbjct: 119 ----LILICFTLGGGKSG-------VIAAVALTHWPRLALILRADAERVAQSDYLTLTYR 167
Query: 267 IGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG 326
+G H P ++ L L F VL A LSFLG G P G ++ D
Sbjct: 168 LGHGHLYCWRYHYFPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADA 227
Query: 327 AQYFPR-CWWLVFYPGLVV 344
++ WWLV +PGL++
Sbjct: 228 LRFISHGNWWLVLFPGLML 246
>pir||D81253 probable peptide ABC-transport system permease protein Cj1582c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968999|emb|CAB73570.1| (AL139079) putative peptide
ABC-transport system permease protein [Campylobacter
jejuni]
Length = 264
Score = 69.5 bits (167), Expect = 7e-11
Identities = 75/307 (24%), Positives = 123/307 (39%), Gaps = 56/307 (18%)
Query: 57 LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
LI L +I L +F PFLA + + ++H +N++ AP Y
Sbjct: 7 LIILAPLIFLFLCALFAPFLALFD------ILSTHLENLHQAP-------------NFTY 47
Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
LG D GRDL S LL R S +I + + + + +A + MR+ +
Sbjct: 48 ILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCF---FYVFCMRILE 104
Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
FL+ PA +L + F ++ + + L IF +
Sbjct: 105 FFLALPAFLLMMFFQSM-------------ITSDVFLMIFLI------------------ 133
Query: 237 IIVWWPGYARITRGSTLTEREKL-YVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
++ W ARI S L E L + +A +G F+ ++P + I +
Sbjct: 134 ALIHWCFIARIIE-SELKRLENLDFYKANIVLGRTKFRAFFKDLIPALKTLIFTLFIFNI 192
Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ-YFPRCWWLVFYPGLVVLLTALGWNLL 354
+ EA LSF GLG I G ++ + ++ F WW++ +P L +LL L L
Sbjct: 193 VHAIATEATLSFFGLGLGFEIPTLGTLLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWL 252
Query: 355 GDGLRDI 361
G+ L+ I
Sbjct: 253 GNFLQKI 259
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.147 0.451
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147956296
Number of Sequences: 2977
Number of extensions: 6459588
Number of successful extensions: 26847
Number of sequences better than 1.0e-10: 128
Number of HSP's better than 0.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 26472
Number of HSP's gapped (non-prelim): 171
length of query: 387
length of database: 189,106,746
effective HSP length: 50
effective length of query: 337
effective length of database: 159,182,396
effective search space: 53644467452
effective search space used: 53644467452
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)