BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1873 (dppC-2) DE:dipeptide ABC transporter, permease protein
(dppC)
         (387 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75118 dipeptide abc transporter, permease protein (dppc) P...   783  0.0
pir||E71014 probable dipeptide transport system permease protein...   726  0.0
pir||C72617 probable dipeptide transport system permease protein...   433  e-120
pir||E72720 probable oligopeptide transport system permease prot...   219  5e-56
pir||E75202 dipeptide abc transporter, dipeptide-binding protein...   217  2e-55
pir||E75454 peptide ABC transporter, permease protein - Deinococ...   206  3e-52
sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN...   206  5e-52
dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permeas...   204  2e-51
dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permeas...   203  3e-51
pir||E72371 oligopeptide ABC transporter, permease protein - The...   199  3e-50
pir||T34756 oligopeptide transport integral membrane protein - S...   197  2e-49
sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   196  5e-49
pir||D83082 probable permease of ABC transporter PA4504 [importe...   195  7e-49
pir||D64557 dipeptide ABC transporter, permease protein - Helico...   194  2e-48
sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN...   193  3e-48
pir||C82356 peptide ABC transporter, permease protein VC0173 [im...   193  3e-48
pir||D71130 probable oligopeptide transport permease protein APP...   189  7e-47
sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE...   187  3e-46
gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T...   185  1e-45
gi|10954944 Probable accE [Agrobacterium tumefaciens] >gi|649829...   184  2e-45
dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) ...   184  2e-45
pir||T03434 probable transport protein accE - Agrobacterium tume...   183  2e-45
gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-...   181  1e-44
emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter...   181  1e-44
dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [O...   180  2e-44
sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTE...   180  3e-44
dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Ba...   180  3e-44
sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   179  4e-44
pir||E72289 oligopeptide ABC transporter, permease protein - The...   179  6e-44
pir||C38447 sporulation initiation protein spo0KC - Bacillus sub...   176  4e-43
sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   176  4e-43
emb|CAC11409.1| (AL445063) probable dipeptide transport system p...   174  1e-42
gi|11499358 dipeptide ABC transporter, permease protein (dppC) [...   172  7e-42
sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN...   171  1e-41
gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola]         170  2e-41
pir||A75381 peptide ABC transporter, permease protein - Deinococ...   170  3e-41
gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhod...   168  1e-40
pir||C72367 oligopeptide ABC transporter, permease protein - The...   166  5e-40
pir||S75778 oligopeptide transport system permease protein appC ...   164  2e-39
gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; Dp...   162  5e-39
sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   162  6e-39
pir||D72424 oligopeptide ABC transporter, permease protein - The...   161  1e-38
sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   160  3e-38
pir||H72451 probable peptide transport system permease protein A...   159  5e-38
sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN...   159  5e-38
pir||JC5121 oligopeptide permease-like protein - Synechococcus s...   156  4e-37
pir||D82242 oligopeptide ABC transporter, permease protein VC109...   155  1e-36
pir||T45277 oligopeptide transport integral membrane protein bld...   154  1e-36
pir||D70141 oligopeptide ABC transporter, permease protein (oppC...   153  3e-36
emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis]                    153  3e-36
pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC...   153  3e-36
dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permeas...   153  4e-36
pir||C75573 peptide ABC transporter, permease protein - Deinococ...   153  4e-36
gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; Dp...   153  4e-36
gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis]     152  5e-36
pir||G75529 peptide ABC transporter, permease protein - Deinococ...   152  5e-36
gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borre...   152  7e-36
pir||G72215 oligopeptide ABC transporter, permease protein - The...   152  9e-36
gb|AAC69844.1| (AF076684) oligopeptide transporter putative memb...   151  2e-35
gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1]        150  4e-35
emb|CAC05749.1| (AL391751) putative peptide transport system int...   149  5e-35
pir||D72300 oligopeptide ABC transporter, permease protein - The...   148  8e-35
dbj|BAB04288.1| (AP001509) nickel transport system (permease) [B...   148  1e-34
gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [...   148  1e-34
gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T...   146  3e-34
pir||B75142 oligopeptide transport integral membrane protein. PA...   146  3e-34
sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NI...   145  7e-34
pir||T35981 probable peptide transport permease - Streptomyces c...   144  2e-33
pir||T44599 oligopeptide transport system permease protein [impo...   143  5e-33
pir||H75026 oligopeptide abc transporter, permease protein (appc...   141  1e-32
pir||D70431 oligopeptide transport system permease - Aquifex aeo...   141  1e-32
pir||H71211 probable oligopeptide transport system permease prot...   137  3e-31
pir||A70789 probable peptidetransport system permease - Mycobact...   137  3e-31
dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus]                136  3e-31
gb|AAB38742.1| (U78885) transport system permease homolog [Liste...   135  8e-31
sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN...   134  1e-30
gi|10954709 hypothetical ABC-transporter gene~similar to dppC ge...   134  2e-30
sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE P...   134  2e-30
gb|AAG20459.1| (AE005118) oligopeptide transport permease protei...   133  3e-30
gb|AAC69839.1| (AF076683) oligopeptide transporter putative memb...   133  3e-30
dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permeas...   131  1e-29
gb|AAC18098.1| (AF058302) membrane component of putative ABC tra...   131  1e-29
pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain ...   131  1e-29
pir||H72536 probable oligopeptide transport system permease prot...   129  4e-29
pir||D82170 peptide ABC transporter, permease protein VC1682 [im...   128  1e-28
gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus sol...   125  7e-28
pir||D71545 probable oligopeptide permease - Chlamydia trachomat...   124  1e-27
dbj|BAA98410.1| (AP002545) oligopeptide permease [Chlamydophila ...   124  2e-27
pir||F72107 peptide ABC transporter, permease protein CP0567 [im...   122  7e-27
pir||G81699 peptide ABC transporter, permease protein TC0473 [im...   122  1e-26
pir||C72282 oligopeptide ABC transporter, permease protein - The...   121  1e-26
pir||C71163 probable oligopeptide transport system permease prot...   120  2e-26
emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi]                120  2e-26
pir||C72059 peptide ABC transporter, permease protein, probable ...   118  1e-25
sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...   117  2e-25
emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methan...   116  3e-25
sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S...   115  1e-24
pir||C71510 probable oligopeptide permease - Chlamydia trachomat...   115  1e-24
pir||F81668 peptide ABC transporter, permease protein, probable ...   112  6e-24
pir||G72428 oligopeptide ABC transporter, permease protein - The...   111  1e-23
emb|CAA68075.1| (X99740) oligopeptide transport system permease ...   111  2e-23
gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC...   109  4e-23
gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana]    108  2e-22
pir||B72284 oligopeptide ABC transporter, permease protein - The...   107  3e-22
gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC...   106  5e-22
sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S...   105  1e-21
gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae]       105  1e-21
gi|10955048 ophC [Agrobacterium tumefaciens] >gi|7442467|pir||S7...   104  2e-21
gb|AAC67219.1| (U78968) transmembrane transport protein DppC [St...   103  3e-21
pir||A83389 probable permease of ABC transporter PA2060 [importe...   102  7e-21
pir||F82301 peptide ABC transporter, permease protein VC0618 [im...   101  2e-20
pir||F71957 ABC transporter, permease - Helicobacter pylori (str...    99  1e-19
pir||C64551 oligopeptide ABC transporter, permease protein - Hel...    98  1e-19
sp|P45287|SAPC_HAEIN PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN S...    98  2e-19
pir||E83419 probable permease of ABC transporter PA1808 [importe...    97  4e-19
pir||T35940 probable transport permease protein - Streptomyces c...    96  5e-19
gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus]     92  8e-18
sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROT...    92  1e-17
emb|CAC12448.1| (AL445067) oligopeptide transport system, permea...    89  9e-17
emb|CAC17496.1| (AL450432) putative transport system integral me...    87  3e-16
gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus sol...    85  1e-15
pir||C72393 oligopeptide ABC transporter, permease protein - The...    83  7e-15
pir||A72421 oligopeptide ABC transporter, permease protein - The...    80  5e-14
emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyo...    77  3e-13
pir||B82876 oligopeptide transport system permease protein UU561...    77  4e-13
gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonel...    75  2e-12
pir||D81253 probable peptide ABC-transport system permease prote...    69  7e-11

>pir||A75118 dipeptide abc transporter, permease protein (dppc) PAB1873 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458169|emb|CAB49658.1| (AJ248285) dipeptide ABC
           transporter, permease protein (dppC) [Pyrococcus abyssi]
           Length = 387
           
 Score =  783 bits (2000), Expect = 0.0
 Identities = 387/387 (100%), Positives = 387/387 (100%)

Query: 1   MQEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL 60
           MQEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL
Sbjct: 1   MQEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL 60

Query: 61  FIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGA 120
           FIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGA
Sbjct: 61  FIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGA 120

Query: 121 DHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLS 180
           DHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLS
Sbjct: 121 DHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLS 180

Query: 181 FPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVW 240
           FPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVW
Sbjct: 181 FPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVW 240

Query: 241 WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVL 300
           WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVL
Sbjct: 241 WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVL 300

Query: 301 MEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRD 360
           MEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRD
Sbjct: 301 MEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRD 360

Query: 361 ILDPKTRRSIEFKVKKQKKMEEGEESA 387
           ILDPKTRRSIEFKVKKQKKMEEGEESA
Sbjct: 361 ILDPKTRRSIEFKVKKQKKMEEGEESA 387


>pir||E71014 probable dipeptide transport system permease protein dppC -
           Pyrococcus horikoshii >gi|3257834|dbj|BAA30517.1|
           (AP000006) 385aa long hypothetical dipeptide transport
           system permease protein dppC [Pyrococcus horikoshii]
           Length = 385
           
 Score =  726 bits (1854), Expect = 0.0
 Identities = 353/387 (91%), Positives = 371/387 (95%), Gaps = 2/387 (0%)

Query: 1   MQEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL 60
           MQEEYKK+ILDK ADKLVYG+GKFI+LFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL
Sbjct: 1   MQEEYKKTILDKTADKLVYGLGKFISLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGL 60

Query: 61  FIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGA 120
           F+VIIFI +GIFGP+LAPWKYNFFPTLYTSHYD VYL PPGSKAVL++YNN  I YPLG+
Sbjct: 61  FLVIIFIFLGIFGPYLAPWKYNFFPTLYTSHYDQVYLVPPGSKAVLDFYNNTVITYPLGS 120

Query: 121 DHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLS 180
           DHYGRDLLSL+LQGARTSFVISIIVI  GVPLGIILGL+AGYYGGK+DELIMR TDMFL+
Sbjct: 121 DHYGRDLLSLILQGARTSFVISIIVISLGVPLGIILGLIAGYYGGKIDELIMRTTDMFLA 180

Query: 181 FPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVW 240
           FPALILAIAFSAVLPDRLQAFISSH +IEKIVLAIFALD REAGNLGRLLAVIVAMIIVW
Sbjct: 181 FPALILAIAFSAVLPDRLQAFISSHEIIEKIVLAIFALDQREAGNLGRLLAVIVAMIIVW 240

Query: 241 WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVL 300
           WPGYARITRGSTLTEREKLYVEAARA+GLPTRTILF+HILPNIIGPILVYITLDFGGVVL
Sbjct: 241 WPGYARITRGSTLTEREKLYVEAARAVGLPTRTILFKHILPNIIGPILVYITLDFGGVVL 300

Query: 301 MEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRD 360
           MEAGLSFLGLGA PPIADWGRIVYDGAQYFPRCWWLVFYPGL+VLLTALGWNLLGDGLRD
Sbjct: 301 MEAGLSFLGLGAVPPIADWGRIVYDGAQYFPRCWWLVFYPGLIVLLTALGWNLLGDGLRD 360

Query: 361 ILDPKTRRSIEFKVKKQKKMEEGEESA 387
           ILDP+TRRSIEFKVKK KK  EGEESA
Sbjct: 361 ILDPRTRRSIEFKVKKGKK--EGEESA 385


>pir||C72617 probable dipeptide transport system permease protein APE1396 -
           Aeropyrum pernix (strain K1) >gi|5105079|dbj|BAA80393.1|
           (AP000061) 387aa long hypothetical dipeptide transport
           system permease protein [Aeropyrum pernix]
           Length = 387
           
 Score =  433 bits (1102), Expect = e-120
 Identities = 211/384 (54%), Positives = 282/384 (72%), Gaps = 12/384 (3%)

Query: 2   QEEYKKSILDKIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGLF 61
           +E Y+K +LD++AD +V G+   I L +  W ++N++R++E +L LYALNRSP  L+G+ 
Sbjct: 4   EEVYEKKLLDRVADAIVDGLAALINLVRPGWADRNKARMDELKLTLYALNRSPIGLLGVA 63

Query: 62  IVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNA--------- 112
           +VI F+++ + GP++AP  YN       + +D V LAPPG+  V+E   ++         
Sbjct: 64  LVIAFVIIAVIGPYIAPLGYNDQLVYCVTDFDAVRLAPPGT--VVEVAEDSICTQLGIEP 121

Query: 113 -TIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
            T    LGAD YGRDLLS +L GARTSF++ I+V+  G  +GI+LGL +GY GG VDE+I
Sbjct: 122 GTYKLWLGADEYGRDLLSRILYGARTSFIVVILVMAVGPWIGILLGLFSGYRGGVVDEVI 181

Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
           MR+ D+FL+FP LILAIA SAVLP RL   I ++ ++   +L +FAL   +A  + RL+ 
Sbjct: 182 MRVVDVFLAFPGLILAIALSAVLPSRLDPIIINNELLLGTLLRLFALKPEDALPMVRLVV 241

Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
           V++A+ IVWWP YAR+ RG  L+ RE  YVEAARA+G+PT +IL  HILPNI+GP+LVY+
Sbjct: 242 VVIALWIVWWPVYARLVRGMVLSARENTYVEAARALGIPTHSILLGHILPNILGPVLVYL 301

Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
           TLDFG V+L+EAGLSFLGLGA PPIADWGRI+YDGAQY+P  WWLVF+PGL +L T LG+
Sbjct: 302 TLDFGAVILVEAGLSFLGLGAVPPIADWGRIIYDGAQYYPNAWWLVFFPGLAILFTVLGF 361

Query: 352 NLLGDGLRDILDPKTRRSIEFKVK 375
           NLLGD LRDI+DP+TRR IEFKVK
Sbjct: 362 NLLGDALRDIMDPRTRRRIEFKVK 385


>pir||E72720 probable oligopeptide transport system permease protein oppC
           APE0302 - Aeropyrum pernix (strain K1)
           >gi|5103941|dbj|BAA79257.1| (AP000059) 308aa long
           hypothetical oligopeptide transport system permease
           protein oppC [Aeropyrum pernix]
           Length = 308
           
 Score =  219 bits (552), Expect = 5e-56
 Identities = 126/336 (37%), Positives = 190/336 (56%), Gaps = 50/336 (14%)

Query: 37  RSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNF---FPTLYTSHYD 93
           +S  E++  ++  L  +P + +GL I+  FIL+ +  P LAP  Y      P +Y+S   
Sbjct: 14  KSLYEKFESLILELYSNPLSRMGLIIITGFILIAVAAPLLAPPNYPDPYKIPKVYSSEP- 72

Query: 94  NVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLG 153
                PP SK      +    YY +   +YG      ++ G R S  IS+IV+   V +G
Sbjct: 73  ----LPPSSKHPFGT-SGPPGYYDI---YYG------VIWGTRISLRISLIVVGVAVAIG 118

Query: 154 IILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVL 213
           +++G ++ Y+GG +D ++MR+T++FLS P LILA+A ++++   LQ              
Sbjct: 119 VVVGSISAYFGGIIDNILMRITEVFLSLPGLILAMAIASMMERSLQN------------- 165

Query: 214 AIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRT 273
                             +I+A+I VWWP YARI R   L  + + YVEAA+ +GL T  
Sbjct: 166 ------------------MILALIAVWWPAYARIVRAEVLRVKNEPYVEAAKILGLNTYR 207

Query: 274 ILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPR- 332
           I+ RHILPN I  +LV  ++D G VVL+ +GL FLGLGA P  A+WG ++ +G  +  + 
Sbjct: 208 IIARHILPNSIYTVLVIASMDLGLVVLVASGLGFLGLGAQPGTAEWGIMISEGRNWLLQG 267

Query: 333 CWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
            WW VF+PG+ + L  LGW+LLGDGLRD+LDP+TR+
Sbjct: 268 AWWPVFFPGIAIFLWVLGWSLLGDGLRDVLDPRTRK 303


>pir||E75202 dipeptide abc transporter, dipeptide-binding protein PAB0093 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5457577|emb|CAB49068.1| (AJ248283) dipeptide ABC
           transporter, dipeptide-binding protein [Pyrococcus
           abyssi]
           Length = 287
           
 Score =  217 bits (547), Expect = 2e-55
 Identities = 119/323 (36%), Positives = 175/323 (53%), Gaps = 50/323 (15%)

Query: 43  WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
           W L      ++   +IGL I+I ++LV IF PF+AP+      +    H ++  L PP  
Sbjct: 12  WHLTWLRFKKNKLGMIGLGIIIFWVLVAIFAPFIAPY------SPVEQHLED-RLKPPCE 64

Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
           K            Y  G D +GRD+ S ++ G+R + V+ IIV +    +G+ LGL++GY
Sbjct: 65  K------------YWFGTDEFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGY 112

Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
           +GGKVDE+IMR  D+  +FPALILA+A  A+L   L                        
Sbjct: 113 FGGKVDEIIMRAVDIVWAFPALILALAIVAILGPGL------------------------ 148

Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
                  +  ++A+ +V W  YAR+ R  TL+ +E+L++EAARAIG     ILF +ILPN
Sbjct: 149 -------INAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDLRILFSYILPN 201

Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
           ++  ILV IT +    ++  + LSFLGLGA PP  DWG ++     Y  R  W   +PGL
Sbjct: 202 VMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSARVYVTRAPWYSIFPGL 261

Query: 343 VVLLTALGWNLLGDGLRDILDPK 365
            ++   LG+N +GDGLRD + P+
Sbjct: 262 AIMTLVLGFNFVGDGLRDAIQPE 284


>pir||E75454 peptide ABC transporter, permease protein - Deinococcus radiodurans
           (strain R1) >gi|6458682|gb|AAF10533.1|AE001948_2
           (AE001948) peptide ABC transporter, permease protein
           [Deinococcus radiodurans]
           Length = 332
           
 Score =  206 bits (519), Expect = 3e-52
 Identities = 116/326 (35%), Positives = 183/326 (55%), Gaps = 29/326 (8%)

Query: 52  RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLE---- 107
           RS P  +G  IV +F+L+ +  P L P+     PT  T     + L PP   A+ +    
Sbjct: 23  RSTPGKVGAIIVALFVLLALLAPVLRPYD----PT--TDRNYRLNLKPPSITALWDAGAK 76

Query: 108 --YYNNATIYY-----PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVA 160
             Y + AT        P G D+ GRD+ + +L G R S  + ++  +  + +G +LG++A
Sbjct: 77  ETYTDPATGKVNLWAAPFGTDNLGRDIYARVLHGTRISLKVGVVSTLLALVIGTLLGVMA 136

Query: 161 GYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDV 220
           G++GG  D ++  LTD+ L+FP+++LAI F+ +       F S HP      L I  LD 
Sbjct: 137 GFFGGWFDSVMGYLTDVLLAFPSILLAIGFATI-------FSSDHPP-----LLIKGLDR 184

Query: 221 REAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHIL 280
             A N  +L+  ++A+ +V  P Y R+ R   L+ RE+ +V+AA A+G     ++F+H+L
Sbjct: 185 LFALNSPQLVTAMLAVSLVQIPVYMRLARSVVLSIREREFVQAAGALGASQWRMVFKHVL 244

Query: 281 PNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYP 340
           PN + P++V   L      +  A L FLG+GA PP+ +WG ++ D  QY+    W + +P
Sbjct: 245 PNSLSPLIVQGALSIATATIEVAALGFLGIGAQPPLPEWGTMISDSRQYYVDAPWTMIFP 304

Query: 341 GLVVLLTALGWNLLGDGLRDILDPKT 366
           GL + LT LG+NLLGDGLRD+LDP++
Sbjct: 305 GLAIFLTVLGFNLLGDGLRDVLDPRS 330


>sp|P37315|DPPC_ECOLI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
           >gi|1073368|pir||S47764 dipeptide transport system
           permease protein dppC - Escherichia coli
           >gi|349227|gb|AAA23704.1| (L08399) transmembrane protein
           [Escherichia coli] >gi|466681|gb|AAB18520.1| (U00039)
           dppC [Escherichia coli] >gi|1789964|gb|AAC76567.1|
           (AE000431) dipeptide transport system permease protein 2
           [Escherichia coli K12]
           Length = 300
           
 Score =  206 bits (518), Expect = 5e-52
 Identities = 111/317 (35%), Positives = 174/317 (54%), Gaps = 44/317 (13%)

Query: 52  RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
           R+  A++GL  V+I + + IF  ++AP+            + +  LAPP       +   
Sbjct: 28  RNKGAVVGLVYVVIVLFIAIFANWIAPYNP-------AEQFRDALLAPPA------WQEG 74

Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
            ++ + LG D  GRD+LS L+ GAR S ++  +V++  + +G+ILGL+AGY+GG VD +I
Sbjct: 75  GSMAHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVILGLIAGYFGGLVDNII 134

Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
           MR+ D+ L+ P+L+LA+                      +++AIF   +  A        
Sbjct: 135 MRVVDIMLALPSLLLAL----------------------VLVAIFGPSIGNAA------- 165

Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
             +A+  V  P Y R+TR + L E  + YV A+R  G      +F +I PN + P++V  
Sbjct: 166 --LALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLIVQA 223

Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
           +L F   +L  A L FLG+GA PP  +WG ++ D  Q+    WW+V +PGL +LLT L +
Sbjct: 224 SLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILLTVLAF 283

Query: 352 NLLGDGLRDILDPKTRR 368
           NL+GDGLRD LDPK ++
Sbjct: 284 NLMGDGLRDALDPKLKQ 300


>dbj|BAB04068.1| (AP001508) oligopeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 305
           
 Score =  204 bits (513), Expect = 2e-51
 Identities = 112/318 (35%), Positives = 169/318 (52%), Gaps = 48/318 (15%)

Query: 50  LNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDN--VYLAPPGSKAVLE 107
           L RS    +GL IV++ +L+  F   LAP         +  H  N  + L PP       
Sbjct: 29  LIRSKTGTVGLIIVLVVLLLAAFADVLAP---------HNPHEVNPAMMLKPPA------ 73

Query: 108 YYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
           + +  +  + LG DH GRD+ S ++ G+R S ++ +  ++    +G+ +G+VAG+YGG +
Sbjct: 74  WLDGGSSEHFLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGFYGGWL 133

Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
           D   MRL D FLS P ++LA+                      ++L++F   V       
Sbjct: 134 DTAFMRLVDSFLSIPNILLAL----------------------VILSVFGPGV------- 164

Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
               +I  + +  W  YAR+ RG  L+ +E+ +V+AARAIG+  R ++ RH+LPN++ P 
Sbjct: 165 --WTLIFVLGVTNWVNYARLVRGEVLSIKEREFVKAARAIGVKNRMVMVRHLLPNVVSPF 222

Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
           +V  TL     +++EA LSFLGLG  PP   WG I+ DG  Y    WWL  +PGL + LT
Sbjct: 223 IVISTLSVATTIILEASLSFLGLGIQPPDISWGGILSDGRDYIATSWWLATFPGLAITLT 282

Query: 348 ALGWNLLGDGLRDILDPK 365
            LG   LGD LRD+LDP+
Sbjct: 283 VLGIIFLGDWLRDVLDPR 300


>dbj|BAB03749.1| (AP001507) oligopeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 301
           
 Score =  203 bits (511), Expect = 3e-51
 Identities = 109/329 (33%), Positives = 176/329 (53%), Gaps = 50/329 (15%)

Query: 39  RLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLA 98
           R++ W+     L ++  A++GL ++I FI+V + GP+            +T+H       
Sbjct: 22  RIQSWKNFYKKLAKNKAAMVGLSLIIFFIVVALIGPY------------FTTH------- 62

Query: 99  PPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGL 158
            P    V+      +  +  G DH+GRD+ + ++ G   +  +    ++ G  +G+ILG+
Sbjct: 63  DPYEPNVMNKLAEPSAEHWFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILGV 122

Query: 159 VAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFAL 218
           V+GYYG  VD +IMR+ D+ L+FP ++LA+A  ++L                        
Sbjct: 123 VSGYYGRLVDTVIMRIMDVLLAFPGILLALAIISILG----------------------- 159

Query: 219 DVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRH 278
                   G +  VI+A+ I   P +ARI RGSTL  R+  Y++A +A+G     I+F+H
Sbjct: 160 --------GSINNVIIAVGIFSIPVFARIVRGSTLAVRKLEYIDAVKALGASDARIIFKH 211

Query: 279 ILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVF 338
           ILPN++ PI+V  TL     +L  + LSFLGLGA PPI +WG ++ DG  Y      +  
Sbjct: 212 ILPNVLSPIIVQGTLSIATSILTASALSFLGLGAQPPIPEWGAMLSDGRNYMYDAPHVAL 271

Query: 339 YPGLVVLLTALGWNLLGDGLRDILDPKTR 367
           +PGL +++  L +N+ GDGLRD LDPK++
Sbjct: 272 FPGLAIVVVVLAFNIFGDGLRDALDPKSK 300


>pir||E72371 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981013|gb|AAD35587.1|AE001726_21 (AE001726)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 313
           
 Score =  199 bits (502), Expect = 3e-50
 Identities = 120/342 (35%), Positives = 185/342 (54%), Gaps = 47/342 (13%)

Query: 41  EEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFF------PTLYTSHYDN 94
           +E++ ++    R P A+IG  +V+ F+++ I  P +AP  +         P L      N
Sbjct: 3   QEFKRIMKRFFRDPSAIIGFSLVLFFVVIAILAPVIAPPIHPLTRAKLPDPYLMPVVSWN 62

Query: 95  VYLAPPGSK--AVLEYYNNATI----YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMF 148
               PP +K  A+ +  N   I    Y+P G    GRD+L  ++ G RT+F I +IV + 
Sbjct: 63  QSPQPPTTKEDALAKNPNREPIRCVDYHPFGVIG-GRDILYGIVWGTRTAFKIGLIVTLA 121

Query: 149 GVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVI 208
            + +G+ +G ++GY+GG +DE++MR+TD+FLS P LI A+  + VL   L          
Sbjct: 122 RLLIGVFIGSISGYFGGWIDEVLMRITDIFLSIPFLIAAVVLTTVLGTGLDK-------- 173

Query: 209 EKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIG 268
                                  V++AMI+  W G AR+ RG+ L  RE+ +V AA+AIG
Sbjct: 174 -----------------------VMIAMIVFGWMGAARLIRGNILQVREEQFVLAAKAIG 210

Query: 269 LPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV---YD 325
           +P   I+ +H+LPN I P+L++ +++ G +V+  A LSFLGLGA    ADWG I+    D
Sbjct: 211 VPDFLIILKHVLPNTIFPVLIWASMNMGSLVITAAVLSFLGLGAPQGYADWGSILSYSRD 270

Query: 326 GAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
                 + W+ + YPG  ++L  LGWNLLGD LRD  DP+ +
Sbjct: 271 WMMEIGKHWYALVYPGTAMVLFVLGWNLLGDALRDAFDPRLK 312


>pir||T34756 oligopeptide transport integral membrane protein - Streptomyces
           coelicolor >gi|3402243|emb|CAA20179.1| (AL031184)
           oligopeptide transport integral membrane protein
           [Streptomyces coelicolor A3(2)]
           Length = 335
           
 Score =  197 bits (495), Expect = 2e-49
 Identities = 116/333 (34%), Positives = 172/333 (50%), Gaps = 42/333 (12%)

Query: 44  RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHY-DNVYLAPPGS 102
           R+    L R   AL G  +V++ I+V +F P +    Y   P  Y     D ++  P GS
Sbjct: 37  RIAWERLKRDKLALAGGIVVLVLIVVAVFAPLITSL-YGQDPNAYNEDMIDPLFGTPTGS 95

Query: 103 KAVLEYYNNATIYYPLGADHY-------GRDLLSLLLQGARTSFVISIIVIMFGVPLGII 155
                          LG +H+       GRD+ + ++ GAR S ++  +  M  V LG +
Sbjct: 96  LG------------GLGGEHWLGVEPVNGRDIFARIVHGARISLLVGFLSAMVAVVLGTV 143

Query: 156 LGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAI 215
           LG++AG++GG VD LI R+ D  L+FP L+  IA  +V+PD +                 
Sbjct: 144 LGVLAGFFGGWVDSLICRIMDGLLAFPQLLFIIALVSVMPDNMLGL-------------- 189

Query: 216 FALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTIL 275
                  +G   RLL +IV +    WP   R+ RG TL+ RE+ YVEAAR++G     IL
Sbjct: 190 -------SGTGVRLLMMIVVIGFFGWPYIGRVVRGQTLSMREREYVEAARSLGAGRFYIL 242

Query: 276 FRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW 335
           F+ +LPN++ PI+VY T+     +L EA LSFLG+G  PP + WG+++     Y+     
Sbjct: 243 FKELLPNLVAPIIVYTTMMIPTNILTEAALSFLGVGVKPPTSSWGQMLSSAIDYYKSDPM 302

Query: 336 LVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
            +  PG+ + +T L +NL GDG+RD LDPK  R
Sbjct: 303 YMVVPGVAIFITVLAFNLFGDGVRDALDPKGSR 335


>sp|P42063|APPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC
           >gi|2126890|pir||I40547 oligopeptide ABC transporter
           (permease) appC - Bacillus subtilis
           >gi|677947|gb|AAA62360.1| (U20909) AppC [Bacillus
           subtilis] >gi|2633494|emb|CAB12997.1| (Z99110)
           oligopeptide ABC transporter (permease) [Bacillus
           subtilis]
           Length = 303
           
 Score =  196 bits (492), Expect = 5e-49
 Identities = 112/337 (33%), Positives = 175/337 (51%), Gaps = 54/337 (16%)

Query: 33  MEKNRSRLEEWRLMLY--ALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTS 90
           +++N S+  E    ++    +++  A++G  I+ I I+  +F P +AP+           
Sbjct: 14  LKENISKKPETMTKIFWEKFSKNKLAILGAVILFIIIMSAVFAPLIAPY----------- 62

Query: 91  HYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGV 150
                   P   +++L+ Y    + + +G D +GRD+ S +L GAR S ++    ++  +
Sbjct: 63  --------PQEQQSLLDKYKAPGLEHLMGTDKFGRDIFSRILYGARVSLLVGFASVVGSI 114

Query: 151 PLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEK 210
            +G +LG +AGY+ G VD +IMR+ D+ LS P + L I    +            P ++K
Sbjct: 115 LIGTVLGALAGYFRGIVDAVIMRVVDIVLSIPDIFLLITLVTIFK----------PGVDK 164

Query: 211 IVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLP 270
           ++L IF L                      W   AR+ RG  L+ R + YV AA+ IG  
Sbjct: 165 LIL-IFCL--------------------TGWTTTARLVRGEFLSLRSREYVLAAKTIGTK 203

Query: 271 TRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQY- 329
           T  I+F HILPN +GPI+V  TL  G V+L E+ LS+LG G  PPIA WG ++ D   + 
Sbjct: 204 THKIIFSHILPNALGPIIVSATLKVGSVILAESALSYLGFGIQPPIASWGNMLQDAQNFT 263

Query: 330 -FPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPK 365
              + WW   +PGL +L+T L +N +GDGLRD LDPK
Sbjct: 264 VMIQAWWYPLFPGLFILMTVLCFNFVGDGLRDALDPK 300


>pir||D83082 probable permease of ABC transporter PA4504 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
           >gi|9950744|gb|AAG07892.1|AE004864_4 (AE004864) probable
           permease of ABC transporter [Pseudomonas aeruginosa]
           Length = 303
           
 Score =  195 bits (491), Expect = 7e-49
 Identities = 109/321 (33%), Positives = 165/321 (50%), Gaps = 44/321 (13%)

Query: 49  ALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEY 108
           A  R+  A+ GL  +++ +   +F P++AP+  +         + +  L PP       +
Sbjct: 26  AFTRNKGAVGGLLFMLLIVFCALFAPWVAPYDPS-------EQFRDFLLTPPS------W 72

Query: 109 YNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVD 168
                  + LG D  GRDLLS L+ GAR S +I +  ++  +  GI+LGL+AG+   +  
Sbjct: 73  LEGGQARFLLGTDELGRDLLSRLIHGARLSLLIGLSSVVISLVPGILLGLLAGFSPNRAG 132

Query: 169 ELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGR 228
            LIMRL D+ L+ P+L+LA+A  A+L   L                              
Sbjct: 133 PLIMRLMDIMLALPSLLLAVAIVAILGPGL------------------------------ 162

Query: 229 LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPIL 288
            +  ++A+ IV  P Y R+TR + +TE  + YV A+R  G  T  ++F  +LPN + P++
Sbjct: 163 -INTVIAIAIVSLPAYVRLTRAAVMTELNRDYVTASRLAGAGTLRLMFVCVLPNCMAPLI 221

Query: 289 VYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTA 348
           V  TL F   +L  A L FLGLG  PP  +WG ++     Y  R WW+V  PGL +LL+ 
Sbjct: 222 VQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSV 281

Query: 349 LGWNLLGDGLRDILDPKTRRS 369
           L  NL+GDGLRD LDPK + +
Sbjct: 282 LAINLMGDGLRDALDPKLKNA 302


>pir||D64557 dipeptide ABC transporter, permease protein - Helicobacter pylori
           (strain 26695) >gi|2313398|gb|AAD07369.1| (AE000548)
           dipeptide ABC transporter, permease protein (dppC)
           [Helicobacter pylori 26695]
           Length = 285
           
 Score =  194 bits (488), Expect = 2e-48
 Identities = 114/326 (34%), Positives = 173/326 (52%), Gaps = 44/326 (13%)

Query: 40  LEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAP 99
           +E +R  +    ++  A++G +IV++ ++  IF P LAP         Y  +  +  L P
Sbjct: 1   MESFREFIQQFKKNKAAVVGAWIVLLLVICAIFAPLLAPHDP------YVQNAQDRLLKP 54

Query: 100 PGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
                + E+  NA   Y LG D  GRD+LS L+ GAR S  I I+ +   V  G ILGL+
Sbjct: 55  -----IWEHGGNAK--YLLGTDDLGRDILSRLIYGARISLTIGIVSMGIAVFFGTILGLI 107

Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
           AGY+GGK D +IMR+ D+  + P+++L +   AVL           P +   +LAI  + 
Sbjct: 108 AGYFGGKTDAIIMRIMDIMFALPSILLIVIVVAVLG----------PSLTNAMLAIGFVG 157

Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
           +                     PG+AR+ R S L E+EK YV A++  G     ++ + I
Sbjct: 158 I---------------------PGFARLVRSSVLGEKEKEYVIASKINGSSHLRLMCKVI 196

Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFY 339
            PN I P++V  T+ F   VL  A LSFLGLGA PP  +WG ++ +  QY     W++ +
Sbjct: 197 FPNCIIPLIVQTTMGFASTVLEAAALSFLGLGAQPPKPEWGAMLMNSMQYIATAPWMLVF 256

Query: 340 PGLVVLLTALGWNLLGDGLRDILDPK 365
           PG+++ LT + +NL+GDG+ D LDPK
Sbjct: 257 PGVMIFLTVMSFNLVGDGIMDALDPK 282


>sp|P94312|DPPC_BACFI DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
           >gi|11277274|pir||T44637 dipeptide transport protein
           dppC [imported] - Bacillus firmus
           >gi|1813497|gb|AAB41690.1| (U64514) dipeptide
           transporter protein dppC [Bacillus firmus]
           Length = 304
           
 Score =  193 bits (486), Expect = 3e-48
 Identities = 110/334 (32%), Positives = 169/334 (49%), Gaps = 50/334 (14%)

Query: 34  EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYD 93
           E   + +  WR     L ++  A++GL I+  FIL+ IF P L         + Y     
Sbjct: 20  EDQYTAVSPWREAFKQLKKNKLAIVGLIIITSFILIAIFAPLLTS-------SSYAETNP 72

Query: 94  NVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLG 153
           +  L  P ++            +  G D +GRD+ + ++ GAR S  +    +   +  G
Sbjct: 73  SNRLQGPSAE------------HWFGTDDFGRDIFTRIVYGARLSLQVGFFAVTGALIFG 120

Query: 154 IILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVL 213
             LGL+AGYYG  +D LI R+ D+ L+FP+++LAIA  A+L   LQ              
Sbjct: 121 TTLGLIAGYYGRWIDMLISRIFDIMLAFPSILLAIAIVAILGPSLQN------------- 167

Query: 214 AIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRT 273
                              ++A+ IV  P + R+ R   ++ RE+ ++ AA+A G+    
Sbjct: 168 ------------------ALIAIAIVNVPIFGRLVRSKVISLREEEFIMAAKAQGMKNGR 209

Query: 274 ILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRC 333
           I+F HILPN + PI+V  TL FG  +L  A L FLGLGA  P+ +WG+++ D  Q+    
Sbjct: 210 IIFHHILPNSLAPIIVQATLGFGTAILEAAALGFLGLGAQAPMPEWGKMLSDSRQFIQSA 269

Query: 334 WWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
            W V +PG  ++L  LG+N++GDGLRD LDPK +
Sbjct: 270 PWTVLFPGFSIMLVVLGFNMIGDGLRDALDPKMK 303


>pir||C82356 peptide ABC transporter, permease protein VC0173 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9654576|gb|AAF93349.1| (AE004107) peptide ABC
           transporter, permease protein [Vibrio cholerae]
           Length = 312
           
 Score =  193 bits (485), Expect = 3e-48
 Identities = 112/321 (34%), Positives = 165/321 (50%), Gaps = 34/321 (10%)

Query: 47  LYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVL 106
           LY   R   A+    + ++F++V I  P +AP          T+ YD   +    ++   
Sbjct: 20  LYYFLRDKVAMSSFAVFVLFVIVAISAPLIAP----------TNPYDLSSIDIMDAELPP 69

Query: 107 EYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGK 166
            +      ++ LG D  GRD+ S +L G+R S  I  + +   + LGI++GL AGY+GG+
Sbjct: 70  SWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGR 129

Query: 167 VDELIMRLTDMFLSFPALILAIAFSAVLPDRLQA-FISSHPVIEKIVLAIFALDVREAGN 225
           +D  +MR  D+ LSF  +++AI  SA+        F S + V+                 
Sbjct: 130 IDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVV----------------- 172

Query: 226 LGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIG 285
              +L VI+   +  WP YAR  R S L E++K YVEAAR +G     I+FRHILPN + 
Sbjct: 173 ---MLVVIIG--VAEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLS 227

Query: 286 PILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQY-FPRCWWLVFYPGLVV 344
           PILV  T+     ++ EA LSFLGLG        G ++  G  Y F   WW+  +PG+V+
Sbjct: 228 PILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVL 287

Query: 345 LLTALGWNLLGDGLRDILDPK 365
           +L  L  NLLGD LRD+ +PK
Sbjct: 288 VLLVLVINLLGDWLRDVFNPK 308


>pir||D71130 probable oligopeptide transport permease protein APPC - Pyrococcus
           horikoshii >gi|3257219|dbj|BAA29902.1| (AP000003) 283aa
           long hypothetical oligopeptide transport permease
           protein APPC [Pyrococcus horikoshii]
           Length = 283
           
 Score =  189 bits (474), Expect = 7e-47
 Identities = 102/317 (32%), Positives = 168/317 (52%), Gaps = 58/317 (18%)

Query: 57  LIGLFIVIIFILVGIFGPFLA---PWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNAT 113
           LIGL ++++ +++ +  P L    P   +F P L           PP             
Sbjct: 19  LIGLILLLVLVVIALITPLLPLPDPQSTDFQPFL-----------PPSKD---------- 57

Query: 114 IYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMR 173
             +P+G D+ GRD+ S +L G RTS ++ ++       +G+++G VAGYYGG +D+++ R
Sbjct: 58  --HPMGTDNLGRDIFSRVLWGTRTSLLVGLVAAGLSAIIGVLVGGVAGYYGGTIDDILSR 115

Query: 174 LTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVI 233
           +T++FL  P   LA+                      +V++IF            LL ++
Sbjct: 116 ITEIFLVIPGFFLAL----------------------LVVSIFG---------SSLLNIM 144

Query: 234 VAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITL 293
           + + ++ WP  AR+ R   L+ +E+ +++A R  G+    I+ RHI+PN I PI+    L
Sbjct: 145 IVLGLLIWPSNARLMRAQALSLKEREFIQALRVAGVSDLRIVLRHIIPNGIQPIIANTFL 204

Query: 294 DFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNL 353
              G ++ EAGLSF+GLG  P +  WG+++Y+G  Y    WW+  +PG+ ++LT L  NL
Sbjct: 205 QMAGAIITEAGLSFIGLG-DPNVVSWGKMIYEGQIYITTYWWVPIFPGVFLVLTVLALNL 263

Query: 354 LGDGLRDILDPKTRRSI 370
           LGDGL  +L+PK RR+I
Sbjct: 264 LGDGLLTLLNPKLRRAI 280


>sp|P75799|YLID_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YLID
           >gi|7442415|pir||H64820 probable oligopeptide transport
           protein b0832 - Escherichia coli
           >gi|1787054|gb|AAC73919.1| (AE000185) putative transport
           system permease protein [Escherichia coli K12]
           >gi|4062409|dbj|BAA35527.1| (D90721) Transmembrane
           protein dppC [Escherichia coli]
           >gi|4062417|dbj|BAA35535.1| (D90722) Transmembrane
           protein dppC [Escherichia coli]
           Length = 303
           
 Score =  187 bits (469), Expect = 3e-46
 Identities = 111/326 (34%), Positives = 165/326 (50%), Gaps = 51/326 (15%)

Query: 43  WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKY-NFFPTLYTSHYDNVYLAPPG 101
           W        R   A+     VI+ I+V IF  ++AP+   N+F       YDN+      
Sbjct: 27  WHEFWRRFRRQHMAMTAALFVILLIVVAIFARWIAPYDAENYFD------YDNLN----- 75

Query: 102 SKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAG 161
                   N  ++ +  G D  GRD+ S +L GA+ S    +  +  G  +G +LGL+AG
Sbjct: 76  --------NGPSLQHWFGVDSLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAG 127

Query: 162 YYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVR 221
           YY G  D LIMR+ D+  +FP ++LAIA  AVL   +   I        I +AIF++   
Sbjct: 128 YYEGWWDRLIMRICDVLFAFPGILLAIAVVAVLGSGIANVI--------IAVAIFSI--- 176

Query: 222 EAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILP 281
                               P +AR+ RG+TL  +++ ++E+AR+IG    T+L RHILP
Sbjct: 177 --------------------PAFARLVRGNTLVLKQQTFIESARSIGASDMTVLLRHILP 216

Query: 282 NIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPG 341
             +  I+V+ T+  G  ++  A LSFLGLGA PP  +WG ++ +          +  +P 
Sbjct: 217 GTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA 276

Query: 342 LVVLLTALGWNLLGDGLRDILDPKTR 367
           L + LT L +NLLGDGLRD LDPK +
Sbjct: 277 LAIFLTVLAFNLLGDGLRDALDPKIK 302


>gi|10955091 moaC [Agrobacterium tumefaciens] >gi|11277278|pir||T45538 moaC
           protein [imported] - Agrobacterium tumefaciens plasmid
           pTi15955 >gi|2665714|gb|AAB88474.1| (AF242881) moaC
           [Agrobacterium tumefaciens]
           Length = 293
           
 Score =  185 bits (464), Expect = 1e-45
 Identities = 104/318 (32%), Positives = 167/318 (51%), Gaps = 50/318 (15%)

Query: 50  LNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYY 109
           L  +P   IG+ I+ + ++  +  P L+     F+P    + +D   L+PP +       
Sbjct: 23  LRMNPSMWIGVIIIAVLLVAAVLAPQLS-----FYPPAKQNLFDQ--LSPPSAD------ 69

Query: 110 NNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDE 169
                 Y LGAD YGRD+L+ LL GAR S +I  + ++  + +G ++G++AG+ GGK+D 
Sbjct: 70  ------YLLGADQYGRDILTRLLYGARYSLLIGSLAVVIAMVIGTLIGMMAGFRGGKIDI 123

Query: 170 LIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRL 229
           ++M++ D+ L+FP+LIL IA  A++                                  +
Sbjct: 124 VLMQIMDVILAFPSLILGIALVALMG-------------------------------ATM 152

Query: 230 LAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILV 289
             +I A+     P +AR+ R + LT+R++ YV+A  A+G      LFRHILP I+  ++V
Sbjct: 153 TNIIAAIAFTSVPAFARVARAAVLTQRDREYVQACSAMGFSGSRTLFRHILPAILPEVMV 212

Query: 290 YITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTAL 349
             +L     V  EA L+F+GLG  PP   WG +V DG        +L  +P L +LL  L
Sbjct: 213 LASLWMANAVRTEASLAFVGLGIAPPAPTWGGMVRDGFTVILSSPYLAIFPSLAILLLVL 272

Query: 350 GWNLLGDGLRDILDPKTR 367
            +NL+GDGLRD++DP+ +
Sbjct: 273 AFNLIGDGLRDLIDPRMK 290


>gi|10954944 Probable accE [Agrobacterium tumefaciens]
           >gi|6498297|dbj|BAA87749.1| (AB016260) Probable accE
           [Agrobacterium tumefaciens]
           Length = 286
           
 Score =  184 bits (462), Expect = 2e-45
 Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 48/324 (14%)

Query: 44  RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSK 103
           R  L +  R P   I +++ +I+I V +F    A W     P  Y         APPG+ 
Sbjct: 11  RQFLKSARRIP---ISIWLCLIWIAVVVFVGITAQW---LAPFDYLQQSPLARFAPPGAP 64

Query: 104 AVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYY 163
             L           LG D+ GRD+LS +L   +TS +I+++  +    +G  LG +A ++
Sbjct: 65  GHL-----------LGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHF 113

Query: 164 GGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREA 223
           GG VD LIM   D   S P +I A+         + AF+ S P+I  +++ + + +    
Sbjct: 114 GGWVDNLIMGFADAKASVPFIIFALG--------VLAFLGSSPLILLMLVGVASFE---- 161

Query: 224 GNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNI 283
                               YAR+TRG  L+  ++ Y EAAR +G+P+  I  RH+LPNI
Sbjct: 162 -------------------RYARLTRGLVLSANQEGYAEAARIVGVPSLRIYVRHVLPNI 202

Query: 284 IGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLV 343
            GP++V ITL+F  ++L+E+GLSFLGLG  PP    G +V DG  Y    WWL+  PG+V
Sbjct: 203 AGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVADGRNYIAIAWWLIALPGVV 262

Query: 344 VLLTALGWNLLGDGLRDILDPKTR 367
           ++LT L  +LLGD LRD  D + R
Sbjct: 263 IVLTTLSISLLGDYLRDRFDARLR 286


>dbj|BAB07361.1| (AP001519) dipeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 306
           
 Score =  184 bits (462), Expect = 2e-45
 Identities = 106/328 (32%), Positives = 163/328 (49%), Gaps = 50/328 (15%)

Query: 40  LEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAP 99
           +  WR     L ++  A+ G+ IV  F+ + +F P L            T  +D    A 
Sbjct: 28  ISPWRDAFRQLRKNKLAMTGIVIVCFFLFIALFAPLLT-----------THSFDGYDAAS 76

Query: 100 PGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
                  E++         G D  GRD+ + +  GA+ S  +    +   + +G +LG++
Sbjct: 77  RLQSPSAEHW--------FGTDDLGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLGVL 128

Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
           AGYYG  +D LI R+ D+ L+FP+++LAIA  A+L   L                     
Sbjct: 129 AGYYGRWLDMLISRIFDIMLAFPSILLAIAIVAILGPSLHN------------------- 169

Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
                        +VA+ IV  P + R+ R   ++ R + ++ AARA G+    ILF HI
Sbjct: 170 ------------AMVAIAIVNIPIFGRLVRSKVISLRAEEFIMAARAQGMKNSRILFHHI 217

Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFY 339
           LPN + PI+V  TL FG  +L  A L FLGLGA  P+A+WG+++ D   Y     W+  +
Sbjct: 218 LPNSLSPIIVQATLGFGTAILEAAALGFLGLGAQAPLAEWGKMLADSRAYIQTAPWVAIF 277

Query: 340 PGLVVLLTALGWNLLGDGLRDILDPKTR 367
           PG+ ++L  LG+N++GDGLRD LDPK +
Sbjct: 278 PGMSIMLVVLGFNMIGDGLRDALDPKMK 305


>pir||T03434 probable transport protein accE - Agrobacterium tumefaciens plasmid
           pTiC58 >gi|3153181|gb|AAC17201.1| (AF010180) AccE
           [Agrobacterium tumefaciens]
           Length = 286
           
 Score =  183 bits (461), Expect = 2e-45
 Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 48/324 (14%)

Query: 44  RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSK 103
           R  L +  R P   I +++ +I+I V +F    A W     P  Y         APPG+ 
Sbjct: 11  RQFLKSARRIP---ISIWLCLIWIAVVVFVDITAQW---LAPFDYLQQSPLARFAPPGAP 64

Query: 104 AVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYY 163
             L           LG D+ GRD+LS +L   +TS +I+++  +    +G  LG +A ++
Sbjct: 65  GHL-----------LGTDYLGRDVLSNILVATQTSLMIALVGSLICAFIGTTLGFLAAHF 113

Query: 164 GGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREA 223
           GG VD LIM   D   S P +I A+         + AF+ S P+I               
Sbjct: 114 GGWVDNLIMGFADAKASVPFIIFALG--------VLAFLGSSPLI--------------- 150

Query: 224 GNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNI 283
                   +++ + +  +  YAR+TRG  L+  ++ Y EAAR +G+P+  I  RH+LPNI
Sbjct: 151 --------LLMRVGVASFERYARLTRGLVLSANQEGYAEAARIVGVPSLRIYVRHVLPNI 202

Query: 284 IGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLV 343
            GP++V ITL+F  ++L+E+GLSFLGLG  PP    G +V DG  Y    WWL+  PG+V
Sbjct: 203 AGPLIVQITLNFPDIILLESGLSFLGLGIQPPETSLGLMVADGRNYIAIAWWLIALPGVV 262

Query: 344 VLLTALGWNLLGDGLRDILDPKTR 367
           ++LT L  +LLGD LRD  D + R
Sbjct: 263 IVLTTLSISLLGDYLRDRFDARLR 286


>gb|AAK42737.1| Dipeptide ABC transporter permease protein (dppC-3) [Sulfolobus
           solfataricus]
           Length = 298
           
 Score =  181 bits (455), Expect = 1e-44
 Identities = 108/325 (33%), Positives = 159/325 (48%), Gaps = 46/325 (14%)

Query: 44  RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSK 103
           R ML AL R    L+GL IV +F++  +    L         +     Y    L P    
Sbjct: 8   RFMLKALIRDKAGLLGLIIVSLFLIWSLIQGIL-----EILSSYLRKQYLGYILLPHNPF 62

Query: 104 AVLEYYNNATIYYP------LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILG 157
                YN    ++P      LG +  G D+LS +L        ++I+V+   + +G ILG
Sbjct: 63  Q----YNLQLAFHPPSSTFLLGTNAEGEDILSRILYALPRDAFVAIVVVFSAIIIGGILG 118

Query: 158 LVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFA 217
           ++AGY GG VDE++MR+TD FLS PALIL IA +  L                       
Sbjct: 119 ILAGYLGGIVDEILMRVTDAFLSLPALILVIAITVPLK---------------------- 156

Query: 218 LDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFR 277
                        A I+ + +VWWP YAR  R  TL  +   Y+ AA+   +   ++ +R
Sbjct: 157 ---------ATFFATILGLAVVWWPTYARFYRAQTLRIKNMDYISAAKLSNVSRISLFYR 207

Query: 278 HILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLV 337
           +I  N I P+L Y  LDFG V+L  + L+FLG+G TPPI + G +  +G    P+ WW  
Sbjct: 208 YIFLNAIDPVLAYAALDFGNVILTYSTLAFLGIGITPPIPELGEMAANGVTGLPQYWWWA 267

Query: 338 FYPGLVVLLTALGWNLLGDGLRDIL 362
            +PGL +L+  +G+ LLGD L+D++
Sbjct: 268 LFPGLTILIIVVGFVLLGDRLQDVV 292


>emb|CAC16445.1| (AL450165) putative oligopeptide ABC transporter integral membrane
           protein [Streptomyces coelicolor]
           Length = 301
           
 Score =  181 bits (454), Expect = 1e-44
 Identities = 104/325 (32%), Positives = 164/325 (50%), Gaps = 46/325 (14%)

Query: 45  LMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKA 104
           ++L  L R+  A++ L ++++ +L  +F P +AP+  N    L       + L PP    
Sbjct: 21  VVLRGLLRNKLAVLALAVLVLLLLAALFAPLIAPYDPNAQNLL-------LRLRPPA--- 70

Query: 105 VLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYG 164
              + +  +  + LG D  GRD+LS ++ G R S ++     +    +G ++GL +GY+G
Sbjct: 71  ---WQDGGSGAHLLGTDQLGRDMLSRVVHGTRVSLLVGAGAALLAGVIGTVVGLASGYFG 127

Query: 165 GKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAG 224
           G  D  +MRL D+ L+FP+L+LA+A                                  G
Sbjct: 128 GWADRTLMRLADVQLAFPSLLLALAV--------------------------------VG 155

Query: 225 NLGR-LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNI 283
            LG  L  VIV +    W  YAR+ R   ++ R + +V  ARAIG+   TI+ RH+LPN+
Sbjct: 156 FLGSGLWVVIVVLGFTGWVSYARVVRSEVMSLRTRDFVTEARAIGVTDVTIMRRHLLPNV 215

Query: 284 IGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLV 343
           + P+    TL     ++ EA LS+LGLG       WG ++ DG  Y    WW+  +PG+ 
Sbjct: 216 MAPLATIGTLHVAAAIVAEASLSYLGLGVPKETVTWGGMLADGQLYLGTSWWVAVFPGIA 275

Query: 344 VLLTALGWNLLGDGLRDILDPKTRR 368
           ++LT+L  N+ GD LRD+ DPK  R
Sbjct: 276 LMLTSLAINITGDALRDVADPKAYR 300


>dbj|BAA94701.1| (AB026907) dipeptide transporter DppC homolog [Ochrobactrum
           anthropi]
           Length = 291
           
 Score =  180 bits (453), Expect = 2e-44
 Identities = 107/337 (31%), Positives = 168/337 (49%), Gaps = 64/337 (18%)

Query: 22  GKFITLFKKDWMEKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKY 81
           G+F++LF        R+ +  W         SPP  IG  I+ +  LV IF PF+AP+  
Sbjct: 7   GRFLSLFSM-----LRNEVRSW---------SPPLKIGSAIMALLGLVAIFAPFIAPYDP 52

Query: 82  NFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVI 141
           N+        ++ + L PP  K +             G D+ GRD+ S ++ GAR   V+
Sbjct: 53  NY------QDFEAI-LVPPSLKHLF------------GTDNLGRDVFSRVVFGARIDLVV 93

Query: 142 SIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAF 201
             ++    +  G+++G  AGY GG+ D  +MR+ D+ ++FP L+L +   A+L       
Sbjct: 94  GFLLTYVPMIYGVLIGAYAGYIGGRFDATLMRIIDVAMAFPFLVLIVVILAILG------ 147

Query: 202 ISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYV 261
               P I+ I +AIF                     IV W  YAR+ R   + ER K Y+
Sbjct: 148 ----PGIQNIYIAIF---------------------IVAWTMYARLARAEMMVERTKDYM 182

Query: 262 EAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGR 321
            AA+ +G P   I+F H LPN+I   +V+ T DF   +++ +GLSF+GLG  PP  +WG 
Sbjct: 183 VAAKVLGFPRSRIIFLHGLPNVINSSIVFSTSDFVLNIVLVSGLSFIGLGIQPPAPEWGS 242

Query: 322 IVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGL 358
           ++ +G  +  + WW+   PG  ++LT +   L+GDGL
Sbjct: 243 MIAEGRDFMRQAWWIAVLPGFAIVLTGMALVLIGDGL 279


>sp|P77463|YDDQ_ECOLI HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDDQ
           >gi|7442414|pir||H64901 probable oligopeptide transport
           protein b1485 - Escherichia coli
           >gi|1742425|dbj|BAA15140.1| (D90789) Dipeptide transport
           system permease protein DppC. [Escherichia coli]
           >gi|1742436|dbj|BAA15150.1| (D90790) Dipeptide transport
           system permease protein DppC. [Escherichia coli]
           >gi|1787760|gb|AAC74558.1| (AE000245) putative transport
           protein [Escherichia coli K12]
           Length = 298
           
 Score =  180 bits (451), Expect = 3e-44
 Identities = 105/320 (32%), Positives = 160/320 (49%), Gaps = 50/320 (15%)

Query: 46  MLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAV 105
           +++ L  SP  +    I+++ +L+ IF P+LA    N              L PP +   
Sbjct: 23  LVWMLKGSPLTVTSAVIIVLMLLMMIFSPWLATHDPNAIDL-------TARLLPPSAA-- 73

Query: 106 LEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGG 165
                     +  G D  GRDL S +L G++ S +  ++V+     +G +LG ++G  GG
Sbjct: 74  ----------HWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGG 123

Query: 166 KVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGN 225
           + D +IMR+ D+ LS P+L+L +A +A L   L                           
Sbjct: 124 RADAIIMRIMDIMLSIPSLVLTMALAAALGPSL--------------------------- 156

Query: 226 LGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIG 285
                  ++A+ IV  P Y R+ RG  L  R+  YV+AA+  G     ++  HIL N + 
Sbjct: 157 ----FNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLP 212

Query: 286 PILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVL 345
           P++V  +LD G  +LM A L F+GLGA  P A+WG +V +G  Y    WW   +PG  +L
Sbjct: 213 PLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAIL 272

Query: 346 LTALGWNLLGDGLRDILDPK 365
           LTA+G+NL GDG+RD+LDPK
Sbjct: 273 LTAVGFNLFGDGIRDLLDPK 292


>dbj|BAB05517.1| (AP001513) nickel ABC transporter (permease) [Bacillus halodurans]
           Length = 283
           
 Score =  180 bits (451), Expect = 3e-44
 Identities = 98/259 (37%), Positives = 147/259 (55%), Gaps = 31/259 (11%)

Query: 107 EYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGK 166
           E     ++ +PLG DH GRD+L+ LL GA+ +   S++ ++  + +GI  GL++GY GG 
Sbjct: 51  ERLQGMSLQHPLGTDHLGRDVLTRLLLGAQQTVGYSLMALLVALFIGIPFGLISGYKGGI 110

Query: 167 VDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNL 226
           VD + MR+ D FL+FP  I+AI  S +L   +                         GNL
Sbjct: 111 VDRVFMRVADGFLAFPDTIVAIVLSGLLGPGI-------------------------GNL 145

Query: 227 GRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGP 286
                 ++A+++V W  YAR+ R + LTE EK YV  AR  GL +  I+ +H+ P+I+G 
Sbjct: 146 ------VLAIVMVKWVSYARLVRSTVLTEVEKDYVAIARINGLSSSKIMRKHLFPHIVGH 199

Query: 287 ILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLL 346
           +LV  TLD G ++L+ + LS++GLGA PP  +WG ++ D   YF     L+ YPGL +++
Sbjct: 200 VLVMATLDLGKIILLISALSYIGLGAQPPTPEWGAMLNDSRPYFQSMPQLMIYPGLAIVI 259

Query: 347 TALGWNLLGDGLRDILDPK 365
             L  N+LGD LRD  D K
Sbjct: 260 VVLLTNMLGDYLRDYFDVK 278


>sp|P45053|OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
           >gi|1075086|pir||D64184 oligopeptide transport system
           permease protein oppC - Haemophilus influenzae (strain
           Rd KW20) >gi|1574677|gb|AAC22776.1| (U32792)
           oligopeptide ABC transporter, permease protein (oppC)
           [Haemophilus influenzae Rd]
           Length = 311
           
 Score =  179 bits (450), Expect = 4e-44
 Identities = 112/344 (32%), Positives = 171/344 (49%), Gaps = 54/344 (15%)

Query: 31  DWMEKNRSRLEEWRLMLYALNRSPP-------ALIGLFIVIIFILVGIFGPFLAPWKYNF 83
           D++E+   R+EE +L   +L +          A +   I++ FI++ I    +APW   F
Sbjct: 15  DFVEQVADRIEEMQLEGRSLWQDAKRRFFRNKAAVASLIILAFIIIFIT---VAPW---F 68

Query: 84  FPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISI 143
           FP  Y     N+  A P  +           Y+  G D  GRDLL     G R S ++ I
Sbjct: 69  FPFTYEDTDWNMMSAAPTMEG----------YHFFGTDASGRDLLVRTAIGGRISLLVGI 118

Query: 144 IVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFIS 203
                 V +G I G ++GY GGK D L+MR  ++  SFP +   I               
Sbjct: 119 AGAFISVTIGTIYGAISGYVGGKTDMLMMRFLEILSSFPFMFFVI--------------- 163

Query: 204 SHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEA 263
                  +++ +F  ++           + +A+  + W G ARI RG TL+ + K +VEA
Sbjct: 164 -------LLVTLFGQNI---------FLIFIAIGAIAWLGLARIVRGQTLSLKNKEFVEA 207

Query: 264 ARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV 323
           A   G+P R I+ +HI+PN++G + VY +L+  G++L E+ LSFLGLG   P++ WG ++
Sbjct: 208 AIVCGVPRRQIILKHIIPNVLGLVAVYASLEVPGLILFESFLSFLGLGTQEPMSSWGALL 267

Query: 324 YDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
            DGA       WL+ +P   + LT   +N +GDGLRD LDPK R
Sbjct: 268 SDGAAQMEVSPWLLIFPAFFLCLTLFCFNFIGDGLRDALDPKDR 311


>pir||E72289 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981701|gb|AAD36229.1|AE001772_8 (AE001772)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 301
           
 Score =  179 bits (449), Expect = 6e-44
 Identities = 99/310 (31%), Positives = 164/310 (51%), Gaps = 52/310 (16%)

Query: 56  ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
           A +G+ I++ +I + IF P LAP+     PT+         L PP  K +          
Sbjct: 36  AFVGMIILLFYIFLAIFAPVLAPYD----PTVRVGRS----LQPPSEKHLF--------- 78

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
              G D+ GRD+ S ++ G+R + +++ + ++    +GI LGL++GY GG  D ++  + 
Sbjct: 79  ---GTDNLGRDIFSRVIYGSRIALMVAFLAVVIASAIGIPLGLISGYVGGIFDRVLTLVM 135

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D   SFP LILAIA +AVL   +                               + + V+
Sbjct: 136 DAVYSFPGLILAIAVAAVLGPGM-------------------------------MNIAVS 164

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
           + +V+ P Y R+ R    + + +LYVEAARA+G     IL +++LPN+   I+V ++++ 
Sbjct: 165 IAVVYAPTYFRVVRNQVTSVKNELYVEAARALGAKDWEILVKYVLPNVFPSIVVVLSMNL 224

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQY-FPRCWWLVFYPGLVVLLTALGWNLL 354
              ++ EAGLSFLGLG  PP  DWG  + +G ++   R WW V +PGL ++ + LG+++ 
Sbjct: 225 ADAIMTEAGLSFLGLGIAPPTPDWGFDLSNGQRFILSRAWWGVLFPGLAIITSVLGFSMF 284

Query: 355 GDGLRDILDP 364
            +GL +IL+P
Sbjct: 285 SEGLSEILNP 294


>pir||C38447 sporulation initiation protein spo0KC - Bacillus subtilis
           >gi|143606|gb|AAA62690.1| (M57689) sporulation protein
           [Bacillus subtilis]
           Length = 305
           
 Score =  176 bits (442), Expect = 4e-43
 Identities = 102/333 (30%), Positives = 159/333 (47%), Gaps = 50/333 (15%)

Query: 36  NRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNV 95
           ++  L  W+  +     +  A++GL I+++ IL+ IF P  + + Y+    L        
Sbjct: 23  SKKSLSLWKDAMLPFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADK---- 78

Query: 96  YLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGII 155
              PP               +  G D  GRD+      GAR S  I +   +  + +G+I
Sbjct: 79  ---PPSKD------------HWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVI 123

Query: 156 LGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAI 215
            G ++G+ GG+ DE++MR+ D+  + P+L++ I    VLP  L                 
Sbjct: 124 WGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMVVLPKGL----------------- 166

Query: 216 FALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTIL 275
                           +I+AM I  W   ARI RG  L  + + YV A++ +G  T  +L
Sbjct: 167 --------------FTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLL 212

Query: 276 FRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW 335
           F+HI+PN +G ILV +TL     +  EA LS+LGLG   P+A WG +  DG        W
Sbjct: 213 FKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMASDGLPALTYYPW 272

Query: 336 LVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
            +F+P   + +T  G+N++GDGLRD LDPK R+
Sbjct: 273 RLFFPAGFICITMFGFNVVGDGLRDALDPKLRK 305


>sp|P24139|OPPC_BACSU OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
           >gi|7442409|pir||A69669 oligopeptide ABC transporter
           (permease) oppC - Bacillus subtilis
           >gi|40007|emb|CAA39789.1| (X56347) OppC [Bacillus
           subtilis] >gi|2633499|emb|CAB13002.1| (Z99110)
           oligopeptide ABC transporter (permease) [Bacillus
           subtilis]
           Length = 305
           
 Score =  176 bits (442), Expect = 4e-43
 Identities = 102/333 (30%), Positives = 159/333 (47%), Gaps = 50/333 (15%)

Query: 36  NRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNV 95
           ++  L  W+  +     +  A++GL I+++ IL+ IF P  + + Y+    L        
Sbjct: 23  SKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADK---- 78

Query: 96  YLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGII 155
              PP               +  G D  GRD+      GAR S  I +   +  + +G+I
Sbjct: 79  ---PPSKD------------HWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVI 123

Query: 156 LGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAI 215
            G ++G+ GG+ DE++MR+ D+  + P+L++ I    VLP  L                 
Sbjct: 124 WGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMVVLPKGL----------------- 166

Query: 216 FALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTIL 275
                           +I+AM I  W   ARI RG  L  + + YV A++ +G  T  +L
Sbjct: 167 --------------FTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLL 212

Query: 276 FRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW 335
           F+HI+PN +G ILV +TL     +  EA LS+LGLG   P+A WG +  DG        W
Sbjct: 213 FKHIVPNAMGSILVTMTLTVPTAIFTEAFLSYLGLGVPAPLASWGTMASDGLPALTYYPW 272

Query: 336 LVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
            +F+P   + +T  G+N++GDGLRD LDPK R+
Sbjct: 273 RLFFPAGFICITMFGFNVVGDGLRDALDPKLRK 305


>emb|CAC11409.1| (AL445063) probable dipeptide transport system permease protein
           dppC [Thermoplasma acidophilum]
           Length = 265
           
 Score =  174 bits (437), Expect = 1e-42
 Identities = 106/304 (34%), Positives = 153/304 (49%), Gaps = 58/304 (19%)

Query: 64  IIFILVGIFGPFLA-----PWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPL 118
           ++ +  GI GP +A     P+KYN            V L PP               Y L
Sbjct: 9   LLEVFFGISGPAIALLPHDPFKYNLV----------VGLHPPDRT------------YLL 46

Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
           G +  G D+LS +L        ISIIV++ GV LG + G++AGY GG +DE+IMR+TD F
Sbjct: 47  GTNANGEDILSRMLYAMPRDAYISIIVVLSGVLLGGLFGIIAGYRGGYLDEVIMRITDAF 106

Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
           LS PALIL IA S +  + L                                 VI+A++I
Sbjct: 107 LSLPALILVIALSVLFHETLGG-------------------------------VILALVI 135

Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
           VWWP YAR  R  TL  +   +V+AA+   +    + F ++  N I P++ Y  LDFG V
Sbjct: 136 VWWPIYARFFRAQTLRIKNLDFVQAAKLGNVSFAKLFFSYLFINSIDPVVAYAALDFGNV 195

Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGL 358
           +L  + L+FLG+G  PPI + G +  +G    P  WW   +PGL +L+  +G+ L+GD +
Sbjct: 196 ILTYSTLAFLGIGLEPPIPELGSMASNGVGTLPTGWWYAVFPGLAILIIVIGFVLVGDRM 255

Query: 359 RDIL 362
           +DI+
Sbjct: 256 QDIV 259


>gi|11499358 dipeptide ABC transporter, permease protein (dppC) [Archaeoglobus
           fulgidus] >gi|7442417|pir||H69470 dipeptide ABC
           transporter, permease protein (dppC) homolog -
           Archaeoglobus fulgidus >gi|2648779|gb|AAB89481.1|
           (AE000980) dipeptide ABC transporter, permease protein
           (dppC) [Archaeoglobus fulgidus]
           Length = 286
           
 Score =  172 bits (431), Expect = 7e-42
 Identities = 103/316 (32%), Positives = 160/316 (50%), Gaps = 62/316 (19%)

Query: 59  GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNV-----YLAPPGSKAVLEYYNNAT 113
           GL I+I   L+ +F PF+AP             YD +      L PP ++ ++       
Sbjct: 27  GLAIIITVALMAVFAPFIAP-------------YDPIKSGKDVLQPPSAEHIM------- 66

Query: 114 IYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMR 173
                G D+ GRD+ S ++ G+R    + +   +    +G+ LGL++GY+GGK+D L+  
Sbjct: 67  -----GTDNLGRDVFSRIVFGSRVVLAVVLSASLVSTVIGVPLGLISGYFGGKLDRLLSM 121

Query: 174 LTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVI 233
           L D   +FP LILAIA +AVL   +                                  +
Sbjct: 122 LMDSMYAFPGLILAIAIAAVLGPSV-------------------------------FNAV 150

Query: 234 VAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITL 293
           VA+ +V+ P Y R+ RG TL+ +  L+VEAA+A G     I+ ++I PN+I  ++V  +L
Sbjct: 151 VAISVVYVPTYFRMIRGQTLSVKSLLFVEAAKAAGASDWRIMRKYIFPNLIPTLVVVFSL 210

Query: 294 DFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPR-CWWLVFYPGLVVLLTALGWN 352
                +L EAGLSFLG   + P  DWG  +  G  Y P   WW++ +PGL+V+L +LG+ 
Sbjct: 211 SVADAILTEAGLSFLGFIVSAPTPDWGFELASGRPYLPAGYWWMITFPGLMVMLLSLGFA 270

Query: 353 LLGDGLRDILDPKTRR 368
           L+G+GL +I  P+  R
Sbjct: 271 LVGEGLSEIYAPRRER 286


>sp|P51000|DPPC_HAEIN DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
           >gi|972896|gb|AAA95973.1| (U17295) DppC [Haemophilus
           influenzae] >gi|1574113|gb|AAC22839.1| (U32798)
           dipeptide ABC transporter, permease protein (dppC)
           [Haemophilus influenzae Rd]
           Length = 295
           
 Score =  171 bits (430), Expect = 1e-41
 Identities = 102/310 (32%), Positives = 152/310 (48%), Gaps = 40/310 (12%)

Query: 59  GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPL 118
           G  I +IFIL+      LAP+   F P   T       L PP       +Y      Y L
Sbjct: 26  GALIGLIFILIVALISILAPYIAPFDP---TEQNRTALLLPPA------WYEGGNPAYLL 76

Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
           G D  GRD+LS ++ G R S     I+++     G  LGL++GYYGG +D +I+RL D+ 
Sbjct: 77  GTDDIGRDILSRIIYGTRISVFAGFIIVLLSCAFGTSLGLISGYYGGVLDTIIIRLIDIM 136

Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
           L+ P L+L I   ++L           P +    LAI  + +                  
Sbjct: 137 LAIPNLLLTIVVVSIL----------EPSLANATLAIAVVSI------------------ 168

Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
              P Y R+TR + + E+ + YV +++  G     ++F  ILPN + P++V +T+     
Sbjct: 169 ---PSYVRLTRAAMMNEKNRDYVTSSKVAGAGILRLMFIVILPNCLAPLIVQMTMGISNA 225

Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGL 358
           +L  A L FLG+GA PP  + G ++ +   +     WLV  PGLV+L   L +NL+GDGL
Sbjct: 226 ILELATLGFLGIGAKPPTPELGTMLSEARGFMQAANWLVTIPGLVILSLVLAFNLMGDGL 285

Query: 359 RDILDPKTRR 368
           RD LDPK ++
Sbjct: 286 RDALDPKLKQ 295


>gb|AAC64254.1| (AF042861) putative OppC [Treponema denticola]
           Length = 338
           
 Score =  170 bits (427), Expect = 2e-41
 Identities = 89/267 (33%), Positives = 140/267 (52%), Gaps = 33/267 (12%)

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           +P G D YGRD    +L+G   S  +  +     V +G+ +G VAG++GG+VD +IMRL 
Sbjct: 77  HPFGTDKYGRDTFMRVLEGGWISLQVGFLSTFMAVTIGLTMGSVAGFFGGRVDNIIMRLI 136

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           ++  SFP L +A   SA+  +R   F                          RL  +++ 
Sbjct: 137 EILSSFPFLAIAYTLSAIFRERPPEF--------------------------RLYVIVII 170

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
           + ++ W G AR+ RG  L  RE+ ++ A RA+G+  R  +FRH++PN++  ++V  TL F
Sbjct: 171 LGLLSWTGLARLIRGQILALREQEFIVATRALGIKRRNQIFRHLVPNVLATVVVSATLTF 230

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRC---WWLVFYPGLVVLLTALGWN 352
              +L EA LSFL L  T PI  WG ++   ++        WW+  +PG ++    +  N
Sbjct: 231 ASSILSEAFLSFLNLSVTEPIPTWGALLSKASENSTSLRTFWWIWIFPGAMLFFFIMSIN 290

Query: 353 LLGDGLRDILDPKTRRSIEFKVKKQKK 379
           L+G+GLRD +DPK     E+  K Q+K
Sbjct: 291 LIGEGLRDSIDPKA----EYTTKAQRK 313


>pir||A75381 peptide ABC transporter, permease protein - Deinococcus radiodurans
           (strain R1) >gi|6459332|gb|AAF11131.1|AE002000_7
           (AE002000) peptide ABC transporter, permease protein
           [Deinococcus radiodurans]
           Length = 376
           
 Score =  170 bits (426), Expect = 3e-41
 Identities = 122/396 (30%), Positives = 188/396 (46%), Gaps = 88/396 (22%)

Query: 34  EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPW---KYN-------- 82
           +K +    +W+++     R+P A +GLFI+    L+ +F  FLAP+   +Y+        
Sbjct: 8   QKIQKSKSQWQVIRTQFFRNPLARLGLFILGFLYLIALFAGFLAPYGLTEYSTSDRISWA 67

Query: 83  ------------FFPTLYTSHYD-------NVYLAPPGSKAVLEYY-NNATI-------- 114
                       F P +Y    D       + Y   P  K  ++++  N  I        
Sbjct: 68  PPTKIHWQDDGKFAPHVYGLKRDIDMETFRDKYTEDPSVKCPVKFFVRNPDIEDRTYKFL 127

Query: 115 -----------------YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILG 157
                             Y LG+D++GRD  S ++ G++ S  I II  +  + LG++LG
Sbjct: 128 GFIPSSLKLMGVDEPCKLYLLGSDNFGRDQFSRIMYGSQISLTIGIIASLLSLVLGLVLG 187

Query: 158 LVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFA 217
            +AGY+ G  D LIMRL ++  + P L L I   A+ P      + ++P++      +F 
Sbjct: 188 GIAGYFRGLADTLIMRLVEVLSAIPDLFLLILLRAMFP------LEANPIL------VFY 235

Query: 218 LDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFR 277
           +       +G LLA I       W G AR+ RG  L+ RE  YV+AA A+G     I+ +
Sbjct: 236 I-------VGGLLAFI------GWGGIARVVRGQILSGREMDYVQAANALGASDARIIGQ 282

Query: 278 HILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWG---RIVYDGA--QYFPR 332
           H+LPN    I+V ++L   G +L E+GLSF+G+G   P A WG   ++  DG       R
Sbjct: 283 HLLPNSATFIIVAMSLAIPGYILTESGLSFIGIGIVEPYASWGSLLKLAQDGGFESLDTR 342

Query: 333 CWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
            W  V  PG+ ++L  LGW  +GDGLRD  DP+ RR
Sbjct: 343 PW--VLLPGVFIMLAVLGWQFVGDGLRDAFDPRRRR 376


>gb|AAC77916.1| (AF063589) hypothetical protein transporter [Rhodococcus fascians]
           Length = 714
           
 Score =  168 bits (421), Expect = 1e-40
 Identities = 102/310 (32%), Positives = 160/310 (50%), Gaps = 50/310 (16%)

Query: 53  SPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNA 112
           +P A+  L  V++  + G    F+AP+  N          + + +AP         ++  
Sbjct: 320 NPVAMTALIFVLVVAIAGFMYSFVAPYDPN----------EQLDVAP---------FSGP 360

Query: 113 TIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIM 172
           +  +  G D  GRD+LS LL GA  S   S+IV++  + + + +GL +GY G   D L+M
Sbjct: 361 SADHWFGTDGLGRDVLSRLLAGASVSLRFSVIVVVTALIVALPIGLFSGYIGRWPDTLLM 420

Query: 173 RLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAV 232
           R+ +   SFPA++LAIA   +L   L                           L   +AV
Sbjct: 421 RIMEGIHSFPAIVLAIAIVGILGPSL---------------------------LNAGIAV 453

Query: 233 IVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYIT 292
            VA++    PG+AR+ R   L+ RE+++++A+RAIG PTR IL RH+ PN++ P++V + 
Sbjct: 454 AVAVV----PGFARLIRAQALSVREEVFIDASRAIGTPTRRILLRHLFPNVLSPLIVQVA 509

Query: 293 LDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWN 352
           +  G  +L EAGLS+LGLG  PP A WG ++           W V  PG+ ++L  L +N
Sbjct: 510 VVLGFALLAEAGLSYLGLGVQPPQASWGSMLRQATDSQLTNPWGVLPPGIAIVLVVLAFN 569

Query: 353 LLGDGLRDIL 362
            +G+GLR  L
Sbjct: 570 TIGEGLRTAL 579


>pir||C72367 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981046|gb|AAD35618.1|AE001728_19 (AE001728)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 516
           
 Score =  166 bits (415), Expect = 5e-40
 Identities = 96/262 (36%), Positives = 140/262 (52%), Gaps = 29/262 (11%)

Query: 108 YYNNATI-YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGK 166
           Y NN  +  Y +GAD YGRD+ S ++  +R S  I  I +     L ++ G ++GYYGG 
Sbjct: 279 YDNNEYVRLYIMGADQYGRDVWSRIVFASRISLSIGFIGMFITFALSLVFGGISGYYGGI 338

Query: 167 VDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNL 226
           VDE +MR +++ +S P   L I   ++LP  +       P  +  VL +F L        
Sbjct: 339 VDEFMMRFSEIIMSLPGFYLLILLRSLLPLDI-------PSTQVYVLLVFILS------- 384

Query: 227 GRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGP 286
                       + W G AR+ RG  L+ +++ +VEAARA+G P   ILFRH+LPN    
Sbjct: 385 -----------FIGWAGRARVIRGMVLSIKQREFVEAARALGFPDTRILFRHVLPNTASY 433

Query: 287 ILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV--YDGAQYFPRCWWLVFYPGLVV 344
           ++V  TL   G +L EA LSFLGLG   P A WG ++       Y  +  WL+  PG+ +
Sbjct: 434 LIVAATLAIPGYILGEASLSFLGLGIREPSASWGLMLAQAQNVTYMTKYPWLLI-PGIFI 492

Query: 345 LLTALGWNLLGDGLRDILDPKT 366
            +T L +N +GD LRD LDP++
Sbjct: 493 FITVLSFNFVGDALRDALDPRS 514


>pir||S75778 oligopeptide transport system permease protein appC - Synechocystis
           sp. (strain PCC 6803) >gi|1001269|dbj|BAA10513.1|
           (D64003) oligopeptide transport system permease protein
           [Synechocystis sp.]
           Length = 371
           
 Score =  164 bits (411), Expect = 2e-39
 Identities = 91/251 (36%), Positives = 136/251 (53%), Gaps = 27/251 (10%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG D  GRD  S LL G R S  I +I I    PLG+++G +AGY+GG +D ++MRL ++
Sbjct: 143 LGTDEQGRDQFSRLLFGGRISLFIGLIGITISFPLGMVVGGIAGYFGGWLDVVLMRLVEV 202

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
            ++ P + L +A +AVLP  L                          +  R L ++V   
Sbjct: 203 LMTIPGIYLLVALAAVLPPGL-------------------------SSAQRFLLIVVITS 237

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
            + W G AR+ RG  L+ +++ YV+AA+A+G     I+ RHILP     I++  TL   G
Sbjct: 238 FISWSGLARVIRGQVLSLKQQEYVQAAKAMGAGAPRIIVRHILPQTASYIIISATLAVPG 297

Query: 298 VVLMEAGLSFLGLGATPPIADWGRI--VYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
            ++ E+ LS +GLG   P   WG +  +   A       WLV+ P ++++LT L +NLLG
Sbjct: 298 FIVAESVLSLIGLGIQQPDPSWGNLLSIATNASILVLQPWLVWPPAVLIILTVLAFNLLG 357

Query: 356 DGLRDILDPKT 366
           DGLRD LDP++
Sbjct: 358 DGLRDALDPRS 368


>gb|AAG20590.1| (AE005129) dipeptide ABC transporter permease; DppC1 [Halobacterium
           sp. NRC-1]
           Length = 315
           
 Score =  162 bits (407), Expect = 5e-39
 Identities = 89/255 (34%), Positives = 136/255 (52%), Gaps = 33/255 (12%)

Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
           G D  GRD+    L GA  +     + +     LG+ LG++A YY    D +IMR  D+ 
Sbjct: 92  GTDAAGRDIFKRTLYGAWIAIKYGTVTVAASTFLGVALGIIAAYYSDLTDNVIMRTMDVL 151

Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
           L+FP+L+LA+A                      ++AIF      AG    L  V++A+ +
Sbjct: 152 LAFPSLLLALA----------------------LVAIFG-----AG----LWKVVIALTL 180

Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
           V+ P +AR+ RG+ L   E  Y+EA  A+G     +L RH+ PN + P+ V  TL++G  
Sbjct: 181 VYTPRFARVVRGAALKVLEDEYIEATEALGATDARVLARHVFPNTLAPVTVQSTLNYGLA 240

Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQ--YFPRCWWLVFYPGLVVLLTALGWNLLGD 356
           ++  A LSFLG GA P +  WG ++ +G         WW+  +PGL + +  LG+NLLGD
Sbjct: 241 IIDFAALSFLGFGAAPGMPSWGLMLSNGVTNGLLTGKWWMSLFPGLFLAILVLGFNLLGD 300

Query: 357 GLRDILDPKTRRSIE 371
           G+RD LDP+ R +++
Sbjct: 301 GMRDALDPRMREAVD 315


>sp|P08006|OPPC_SALTY OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
           >gi|72439|pir||QREBOC oligopeptide transport system
           permease protein oppC - Salmonella typhimurium
           >gi|47804|emb|CAA29041.1| (X05491) Opp C (AA1-301)
           [Salmonella typhimurium]
           Length = 302
           
 Score =  162 bits (406), Expect = 6e-39
 Identities = 100/312 (32%), Positives = 164/312 (52%), Gaps = 51/312 (16%)

Query: 56  ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
           +LI LF++ +F+ V    P L+ + Y      + + +  +  AP          + A+ +
Sbjct: 42  SLIVLFLIALFVTVA---PMLSQFTY------FDTDWGMMSSAP----------DMASGH 82

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           Y  G D  GRDLL  +  G R S ++ I   +  V +G + G ++GY GGK+D ++MRL 
Sbjct: 83  Y-FGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLL 141

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           ++  SFP +   I                      +++  F  ++         L + VA
Sbjct: 142 EILNSFPFMFFVI----------------------LLVTFFGQNI---------LLIFVA 170

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
           + +V W   ARI RG TL+ + K ++EAA+  G+ T +I+ RHI+PN++G ++VY +L  
Sbjct: 171 IGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTASIVIRHIVPNVLGVVVVYASLLV 230

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
             ++L E+ LSFLGLG   P++ WG ++ DGA       WL+ +P   +++T   +N +G
Sbjct: 231 PSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIG 290

Query: 356 DGLRDILDPKTR 367
           DGLRD LDPK R
Sbjct: 291 DGLRDALDPKDR 302


>pir||D72424 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4980545|gb|AAD35153.1|AE001692_10 (AE001692)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 362
           
 Score =  161 bits (404), Expect = 1e-38
 Identities = 110/377 (29%), Positives = 172/377 (45%), Gaps = 83/377 (22%)

Query: 42  EWRLMLYALNRSPPALIGLFIVIIFILVGIF----------------------------- 72
           EW+LM +   ++  A+IG+ I+ I  ++GIF                             
Sbjct: 12  EWKLMWWRFKKNKLAVIGMVILGILYVLGIFCEFFSPYDPNRIFARYVYAPPQKIHFFHE 71

Query: 73  GPFLAPWKYNF--------FPTLYTSHYDNVY---LAPPGSKAVLEYYNNATIYY----- 116
           G F+ P+ Y +        F  +Y      +Y   L   G K  L     + +++     
Sbjct: 72  GKFIGPFVYGYKMERDPETFRRIYKEDKTKIYKIRLFVHGDKYKLWNTWESDVHFFGVEE 131

Query: 117 ----PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIM 172
                 G D  GRD+ S +L GAR S  I ++ +   + LGII+G ++GYYGGK+D  I 
Sbjct: 132 GTIFLFGTDRLGRDVFSRILYGARISTTIGLVGVFLSMVLGIIIGGISGYYGGKIDNFIQ 191

Query: 173 RLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAV 232
           R  +  +S P + L +A +A LP                         R    +    A+
Sbjct: 192 RTIEFLISIPTIPLWMALAAALP-------------------------RYWSQIKVYFAI 226

Query: 233 IVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYIT 292
            V + ++ W G AR+ R   L+ +++ +V AAR  G     I+F+H+LP++   ++   T
Sbjct: 227 TVILSLIGWTGLARVVRSKFLSLKDEDFVVAARLAGASEWRIIFKHMLPSLTSHLIASAT 286

Query: 293 LDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG-----AQYFPRCWWLVFYPGLVVLLT 347
           L   G++L E GLSFLGLG  PP   WG ++ +         +P  W L+  PGL V++T
Sbjct: 287 LSIPGMILGETGLSFLGLGLRPPAISWGVLLQEAQNIRTVALYP--WLLI--PGLFVIIT 342

Query: 348 ALGWNLLGDGLRDILDP 364
            L +N +GDGLRD  DP
Sbjct: 343 VLCFNFVGDGLRDAADP 359


>sp|P77664|OPPC_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
           >gi|7442406|pir||H64871 oligopeptide transport system
           permease protein oppC - Escherichia coli
           >gi|1742034|dbj|BAA14777.1| (D90763) Oligopeptide
           transport system permease protein OppC. [Escherichia
           coli] >gi|1787498|gb|AAC74327.1| (AE000223) homolog of
           Salmonella oligopeptide transport permease protein
           [Escherichia coli K12] >gi|1805526|dbj|BAA16040.1|
           (D90852) Oligopeptide transport system permease protein
           OppC. [Escherichia coli]
           Length = 302
           
 Score =  160 bits (400), Expect = 3e-38
 Identities = 97/320 (30%), Positives = 156/320 (48%), Gaps = 64/320 (20%)

Query: 56  ALIGLFIVIIFILVGIFGPFLAPWKYN--------FFPTLYTSHYDNVYLAPPGSKAVLE 107
           A+  L ++++  L  I  P L+ + Y+          P + + HY               
Sbjct: 39  AVASLIVLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHY--------------- 83

Query: 108 YYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
                      G D  GRDLL  +  G R S ++ +   +  V +G + G ++GY GGKV
Sbjct: 84  ----------FGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLYGSLSGYLGGKV 133

Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
           D ++MRL ++  SFP +   I                      +++  F  ++       
Sbjct: 134 DSVMMRLLEILNSFPFMFFVI----------------------LLVTFFGQNI------- 164

Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
             L + VA+ +V W   ARI RG TL+ + K ++EAA+  G+ T  I+ RHI+PN++G +
Sbjct: 165 --LLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVV 222

Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
           +VY +L    ++L E+ LSFLGLG   P++ WG ++ DGA       WL+ +P   +++T
Sbjct: 223 VVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVT 282

Query: 348 ALGWNLLGDGLRDILDPKTR 367
              +N +GDGLRD LDPK R
Sbjct: 283 LFCFNFIGDGLRDALDPKDR 302


>pir||H72451 probable peptide transport system permease protein APE2260 -
           Aeropyrum pernix (strain K1) >gi|5105961|dbj|BAA81272.1|
           (AP000064) 280aa long hypothetical peptide transport
           system permease protein [Aeropyrum pernix]
           Length = 280
           
 Score =  159 bits (398), Expect = 5e-38
 Identities = 93/305 (30%), Positives = 152/305 (49%), Gaps = 53/305 (17%)

Query: 59  GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKA--VLEYYNNATIYY 116
           GL IV  +++V +  P++AP+                    P SK   V E+ +  ++ +
Sbjct: 19  GLAIVAFYLVVALAAPYIAPYS-------------------PHSKVSDVPEHPSPPSLKH 59

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
           P G +  G D+ S ++ G R    + ++  + G+ +G+ LGLV+GY+GG VD ++  + D
Sbjct: 60  PFGTNEIGYDMFSRVVLGTRIVLKVVLLSSVMGLAVGVPLGLVSGYFGGPVDRVLSVVMD 119

Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
              +FP ++LAIA ++VL   +                               L   +A+
Sbjct: 120 SLYAFPGIVLAIAIASVLGPSV-------------------------------LNAAIAL 148

Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
           ++V+ P Y R+TR   +  + + Y+ A R +G P   I+FRH+LP ++  +LV   L   
Sbjct: 149 MVVYVPAYFRMTRARVIEIKTQDYIVALRVLGAPHSRIMFRHVLPGVMPTVLVVYGLASA 208

Query: 297 GVVLMEAGLSFLGLGATPPIADWG-RIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
             +L EAGLSF GL  T P  DWG  I Y   Q+    WWL  +PGL +L  ALG+ ++G
Sbjct: 209 DAILTEAGLSFFGLVVTYPAPDWGLDISYGIKQFLSGSWWLTLFPGLAILTLALGFAMIG 268

Query: 356 DGLRD 360
           +GL +
Sbjct: 269 EGLAE 273


>sp|P26904|DPPC_BACSU DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPC
           >gi|98273|pir||S16649 dipeptide ABC transporter
           (permease) - Bacillus subtilis
           >gi|2632015|emb|CAA05574.1| (AJ002571) DppC [Bacillus
           subtilis] >gi|2633648|emb|CAB13151.1| (Z99110) dipeptide
           ABC transporter (permease) [Bacillus subtilis]
           Length = 320
           
 Score =  159 bits (398), Expect = 5e-38
 Identities = 98/329 (29%), Positives = 152/329 (45%), Gaps = 55/329 (16%)

Query: 41  EEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPP 100
           + WR     L ++  A+ GLFI++   ++ + GPFL+P       ++         L P 
Sbjct: 46  DAWR----RLKKNKLAMAGLFILLFLFVMAVIGPFLSPH------SVVRQSLTEQNLPPS 95

Query: 101 GSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVA 160
                          +  G D  GRD+ +    GAR S  + ++  +    +G+I G VA
Sbjct: 96  AD-------------HWFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVA 142

Query: 161 GYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDV 220
           GY GG++D ++MR+ ++    P L++ I    ++   L                      
Sbjct: 143 GYKGGRIDSIMMRIIEVLYGLPYLLVVILLMVLMGPGLGT-------------------- 182

Query: 221 REAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHIL 280
                      +IVA+ +  W G ARI RG  L  +   YV A++  G  T  I+ +++L
Sbjct: 183 -----------IIVALTVTGWVGMARIVRGQVLQIKNYEYVLASKTFGAKTFRIIRKNLL 231

Query: 281 PNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG-AQYFPRCWWLVFY 339
           PN +G I+V +TL     +  E+ LSFLGLG   P A WG +  DG        WW +F+
Sbjct: 232 PNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMANDGLPTILSGHWWRLFF 291

Query: 340 PGLVVLLTALGWNLLGDGLRDILDPKTRR 368
           P   + LT   +N+LGDGL+D LDPK RR
Sbjct: 292 PAFFISLTMYAFNVLGDGLQDALDPKLRR 320


>pir||JC5121 oligopeptide permease-like protein - Synechococcus sp
           >gi|1332418|dbj|BAA12725.1| (D85103) OppC-like protein
           [Synechococcus sp.]
           Length = 351
           
 Score =  156 bits (391), Expect = 4e-37
 Identities = 86/250 (34%), Positives = 136/250 (54%), Gaps = 27/250 (10%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG D  GRD  S LL G+R S  + ++ ++   PLGI++G +AGY+GG VD LIMRL ++
Sbjct: 126 LGTDDQGRDQFSRLLYGSRISLSVGLVGVILTFPLGILVGGIAGYWGGWVDALIMRLVEV 185

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
            ++ P+L L +A +AVLP  L                          +  R L ++    
Sbjct: 186 LMTIPSLYLLVALAAVLPPGL-------------------------SSAERFLLIVAITS 220

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
           ++ W G AR+ RG  L+ RE+ YV+A++ +G     +L RHILP  +  +++  TL    
Sbjct: 221 LINWAGLARVIRGQVLSLREREYVQASQVMGASRLYLLIRHILPQTLTYVIIAATLAVPS 280

Query: 298 VVLMEAGLSFLGLGATPPIADWGRI--VYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
            ++ E+ LS +GLG   P   WG +  +   A       WL++ P L++++  L +N++G
Sbjct: 281 FIVAESVLSLVGLGIQQPDPSWGNMLSLATNASMLLLNPWLIWPPALLIVVAVLAFNVVG 340

Query: 356 DGLRDILDPK 365
           DGLRD LDP+
Sbjct: 341 DGLRDRLDPR 350


>pir||D82242 oligopeptide ABC transporter, permease protein VC1093 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9655562|gb|AAF94252.1| (AE004190) oligopeptide ABC
           transporter, permease protein [Vibrio cholerae]
           Length = 300
           
 Score =  155 bits (387), Expect = 1e-36
 Identities = 96/326 (29%), Positives = 154/326 (46%), Gaps = 52/326 (15%)

Query: 43  WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
           W+       R+  A++ LF++++  L  +F P  + + Y           D  + A    
Sbjct: 26  WQDARIRFMRNKAAMVSLFVLMLITLAVVFLPMFSAYSYE----------DTDWYAMHAG 75

Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
            +   ++         G D  GRDL    L G R S ++ I+  +  V +G + G  +G+
Sbjct: 76  PSAEHWF---------GTDALGRDLFVRTLVGGRISLMVGIMGALVAVLIGTLYGAASGF 126

Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
            GG+ D ++MR+ ++  + P + L I                       VL  F      
Sbjct: 127 IGGRTDRVMMRILEILYAIPFMFLVI-----------------------VLVTF------ 157

Query: 223 AGNLGR-LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILP 281
               GR ++ + VA+  + W   ARI RG TL+ R K ++EAA   G+    I+ RHI+P
Sbjct: 158 ---FGRNIVLIFVAIGAIAWLDMARIVRGQTLSLRSKEFIEAAHVCGVSKWNIITRHIVP 214

Query: 282 NIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPG 341
           N++G + VY TL    ++L E+ LSFLGLG   P+  WG ++ +GA       W + +P 
Sbjct: 215 NVLGIVAVYSTLLIPSMILTESFLSFLGLGVQEPMTSWGALLQEGANTMEVAIWQLLFPA 274

Query: 342 LVVLLTALGWNLLGDGLRDILDPKTR 367
             ++LT   +N +GDGLRD LDPK R
Sbjct: 275 AFMVLTLFCFNYVGDGLRDALDPKDR 300


>pir||T45277 oligopeptide transport integral membrane protein bldKA [imported] -
           Streptomyces coelicolor >gi|1532201|gb|AAB09554.1|
           (U68036) BldKA [Streptomyces coelicolor A3(2)]
           Length = 335
           
 Score =  154 bits (386), Expect = 1e-36
 Identities = 98/326 (30%), Positives = 160/326 (49%), Gaps = 22/326 (6%)

Query: 44  RLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFP-TLYTSHYDNVYLAPPGS 102
           +LM     R    +I  F+V+ F ++    P ++   Y   P TLY    DN  L    +
Sbjct: 31  QLMWARFKRDRAGVISAFVVLFFFVIAAAAPLIS-MVYGKDPYTLYGQ--DNPDLLDMFT 87

Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
                Y      ++       GRD+ + LL G R S   ++   +    LG+++GL  GY
Sbjct: 88  MPAAPYGGIDGDFWFGIEPGLGRDVFTQLLYGMRNSMATALAATIIMTVLGVLIGLAGGY 147

Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
           +GGK++  + R+TD F++ P+ +               F+++ PVI      +F    +E
Sbjct: 148 FGGKIEYWLGRITDFFMALPSQLF--------------FVAAMPVIT----TVFVAPDKE 189

Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
                R  A+I+ +  + W   ARI RG+ ++ R++ ++EAAR  G     IL + +LPN
Sbjct: 190 TPTYVRAAAIIIVLSFLGWMSMARIVRGAKMSLRDREFIEAARISGASPWRILRKELLPN 249

Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
           I+ P LV  TL     +L  A LSF+G+G   P  DWGR+   GA    +  + + +PG+
Sbjct: 250 IVTPTLVQATLTLPSTILSIAFLSFVGVGYVEPTPDWGRMFAIGADIVEQDPYYMLFPGV 309

Query: 343 VVLLTALGWNLLGDGLRDILDPKTRR 368
            +++  + +NLLGD +RD  DPK  R
Sbjct: 310 AMVIFIVAFNLLGDSVRDAFDPKGNR 335


>pir||D70141 oligopeptide ABC transporter, permease protein (oppC-1) homolog -
           Lyme disease spirochete >gi|2688244|gb|AAC66723.1|
           (AE001140) oligopeptide ABC transporter, permease
           protein (oppC-1) [Borrelia burgdorferi]
           Length = 349
           
 Score =  153 bits (383), Expect = 3e-36
 Identities = 104/378 (27%), Positives = 169/378 (44%), Gaps = 86/378 (22%)

Query: 34  EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYD 93
           E+N S+LE      +  N+   A   LF++  +I + I  P L  +KY+   T    H D
Sbjct: 9   EENNSKLERRAWSRFKENKL--AFGSLFVIGFYISIAILQPILPIYKYH---TQIVEHSD 63

Query: 94  NVYLAPPGSKAVLE-YYNNATIY------------------------------------- 115
                PP  +A  E +YN    +                                     
Sbjct: 64  ----LPPSFQAAGELWYNKEKKFIEKLAKKEKREINEEELKKLEDIKRKIENEVQIIDKK 119

Query: 116 --------YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
                   Y LG D+ GRDLL+ L+QG++ S  +  I     + +G ILG +AG++GG  
Sbjct: 120 EVKIHKRVYLLGTDNLGRDLLARLIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLP 179

Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
           D++I +  ++  + P L++ I   A++              E+ ++ +F           
Sbjct: 180 DKIITKTIEILYALPYLLIVIILMAIM--------------ERSIIGLF----------- 214

Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
                 +A+  V W   AR+ RG   +     +++AA+ +G   + I+ +H++PN IG I
Sbjct: 215 ------IALAFVSWLTVARVVRGQVQSLSSSEFIQAAKTLGATNQRIILKHLIPNSIGMI 268

Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
           +++ T+     ++ EA LSFLGLG + P+  WG +V +G   F    W VF P +V+ + 
Sbjct: 269 VIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQNGIATFVEYPWKVFIPAIVMTIF 328

Query: 348 ALGWNLLGDGLRDILDPK 365
            L  N LGDGLRD  DPK
Sbjct: 329 LLFMNFLGDGLRDAFDPK 346


>emb|CAA40004.1| (X56678) dciAC [Bacillus subtilis]
           Length = 320
           
 Score =  153 bits (383), Expect = 3e-36
 Identities = 96/329 (29%), Positives = 150/329 (45%), Gaps = 55/329 (16%)

Query: 41  EEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPP 100
           + WR     L ++  A+ GLFI++   ++ + GPFL+P       ++         L P 
Sbjct: 46  DAWR----RLKKNKLAMAGLFILLFLFVMAVIGPFLSPH------SVVRQSLTEQNLPPS 95

Query: 101 GSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVA 160
                          +  G D  GRD+ +    GAR S  + ++  +    +G+I G VA
Sbjct: 96  AD-------------HWFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVA 142

Query: 161 GYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDV 220
           GY GG++D ++MR+ ++    P L++ I    ++   L                      
Sbjct: 143 GYKGGRIDSIMMRIIEVLYGLPYLLVVILLMVLMGPGLGT-------------------- 182

Query: 221 REAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHIL 280
                      +IVA+ +  W G ARI RG  L  +   YV A++  G  T  I+ +++L
Sbjct: 183 -----------IIVALTVTGWVGMARIVRGQVLQIKNYEYVLASKTFGAKTFRIIRKNLL 231

Query: 281 PNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG-AQYFPRCWWLVFY 339
            N +G I+V +TL     +  E+ LSFLGLG   P A WG +  DG        WW +F+
Sbjct: 232 RNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFASWGVMANDGLPTILSGHWWRLFF 291

Query: 340 PGLVVLLTALGWNLLGDGLRDILDPKTRR 368
           P   +  T   +N+LGDGL+D LDPK RR
Sbjct: 292 PAFFISSTMYAFNVLGDGLQDALDPKLRR 320


>pir||S76046 hypothetical protein - Synechocystis sp. (strain PCC 6803)
           >gi|1001402|dbj|BAA10024.1| (D63999) oligopeptide
           transport system permease protein [Synechocystis sp.]
           Length = 294
           
 Score =  153 bits (383), Expect = 3e-36
 Identities = 95/309 (30%), Positives = 155/309 (49%), Gaps = 43/309 (13%)

Query: 52  RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
           + P A + L  +II +L  +FGP         F  +     D    A P S         
Sbjct: 22  QKPLASLSLITLIIIVLSVVFGPI--------FYRVPIDQIDFSQTAVPPSWQ------- 66

Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
               +PLG +  G+D L+ LL G R S  + +  +   + LG ++G +AGY+GG  D ++
Sbjct: 67  ----HPLGTNDLGQDQLARLLIGGRISLAVGLSAMAVSLTLGTLIGAIAGYFGGWWDVIL 122

Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
           MR+TD+FL+ P L L +                      +V+ +F   V  A +  + + 
Sbjct: 123 MRITDLFLALPQLPLVL----------------------LVVYLFREPVTRATSPEKGIF 160

Query: 232 VIVAMII--VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILV 289
           ++V ++I  + W   AR+ RG+ L  RE  +V+AA A+G  +  I++RH+LPN++  I+V
Sbjct: 161 ILVVLLIGLLNWMSVARLVRGNILRLREMEFVKAAIAMGAGSNHIIWRHLLPNVLNLIIV 220

Query: 290 YITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTAL 349
             +L  G  ++ E+ LSFLGLG  P +  WG+++Y    Y      +  +PGL + +T L
Sbjct: 221 AASLAVGNAIITESTLSFLGLGFPPDVPTWGQMLYTAKDYLETAPLMAVFPGLAIFITVL 280

Query: 350 GWNLLGDGL 358
             N LGDG+
Sbjct: 281 SVNYLGDGI 289


>dbj|BAB05795.1| (AP001514) oligopeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 293
           
 Score =  153 bits (382), Expect = 4e-36
 Identities = 94/332 (28%), Positives = 160/332 (47%), Gaps = 50/332 (15%)

Query: 46  MLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAV 105
           +L  L R   A + L +++I I+VG+F P  AP                    PP    +
Sbjct: 3   ILKNLMRDKVATLSLSVIVITIVVGLFAPVFAPH-------------------PPNEVHM 43

Query: 106 LEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGG 165
              Y + +  Y LG DH GR +LS L+ G R S +  ++ +   V +G++LG +AGY+ G
Sbjct: 44  ELRYASPSWEYLLGNDHLGRCILSRLIYGIRPSVLSVLVALFLTVLIGLVLGFIAGYFRG 103

Query: 166 KVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGN 225
           KVD +IMR+ D+ LSFP  ++ +AF                      + IF + +     
Sbjct: 104 KVDAVIMRICDIMLSFPGYVMPLAF----------------------IGIFGVGLEN--- 138

Query: 226 LGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIG 285
                 +++A I++ W  +AR  R S +   +  YV+ A+A G+    I+++HI+P    
Sbjct: 139 ------ILIAFILMKWAWFARAIRTSVMQYSQVDYVKFAKASGIHDLKIIYKHIVPVTFA 192

Query: 286 PILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVL 345
            + V  +     ++L  +G SFLGLG   P A+WG ++ +          L+  PGL ++
Sbjct: 193 DVAVISSGSISSMILQISGFSFLGLGIQAPHAEWGMMLNEARNVMFSRPELMLAPGLAII 252

Query: 346 LTALGWNLLGDGLRDILDPKTRRSIEFKVKKQ 377
           +    +N L D L+  LDPK   S +++ +++
Sbjct: 253 IVVAAFNFLSDALQVALDPKLLTSKQYRRERE 284


>pir||C75573 peptide ABC transporter, permease protein - Deinococcus radiodurans
           (strain R1) >gi|6460716|gb|AAF12421.1|AE001863_46
           (AE001863) peptide ABC transporter, permease protein
           [Deinococcus radiodurans]
           Length = 369
           
 Score =  153 bits (382), Expect = 4e-36
 Identities = 86/258 (33%), Positives = 134/258 (51%), Gaps = 34/258 (13%)

Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
           ++  G D  GRDL S  L GA+ S  + ++ ++    LGI+LG V+GY+GG VD LI R+
Sbjct: 141 FFLFGTDQLGRDLFSRTLVGAQVSMTVGVVGVLISFALGILLGGVSGYFGGWVDTLIQRV 200

Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
            ++ LSFP L + +A + ++P R  +                               ++ 
Sbjct: 201 VEVLLSFPRLPILLALATLIPARWPS-------------------------TWVYTGIVA 235

Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
            + ++ W   AR+ RG  L  R   YV AA+A+G     ++ RHI PN+   +LV  TL 
Sbjct: 236 VLALIGWASLARVVRGQVLAARNLDYVSAAQAMGASNLRVILRHITPNLSSFLLVTATLA 295

Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQY-----FPRCWWLVFYPGLVVLLTAL 349
             G +L E+ LSFLGLG   P+  WG ++ D ++      +P   WL+ +PGL V ++ L
Sbjct: 296 LPGYILGESTLSFLGLGIKEPMTSWGLLLRDASKLEVVSSYP---WLL-WPGLFVFISVL 351

Query: 350 GWNLLGDGLRDILDPKTR 367
            +N +GD LRD  D ++R
Sbjct: 352 AFNFMGDALRDAADTQSR 369


>gb|AAG20450.1| (AE005117) dipeptide ABC transporter permease; DppC2 [Halobacterium
           sp. NRC-1]
           Length = 526
           
 Score =  153 bits (382), Expect = 4e-36
 Identities = 107/387 (27%), Positives = 176/387 (44%), Gaps = 50/387 (12%)

Query: 12  KIADKLVYGIGKFITLFKKDWMEKNRSRLEEWRL---MLYALNRSPPALIGLFIVIIFIL 68
           ++A  L Y +  F  L++     +   R   W     M+  L        G+ ++++F+ 
Sbjct: 153 RMALTLAYSLFTFYWLYRGWLTFRTHYRRAGWTPRDDMVNRLRNHSWGKFGIVVLVLFLT 212

Query: 69  VGIFGPFLAPWKYNFFPTL-------YTS--------------HYDNVYLAPPGSKAVLE 107
           + +FG  LAP       T        Y S              ++++     P     + 
Sbjct: 213 MSLFGTTLAPSTVQQNITASYGNEVQYVSDDTGAVETIPAGEANFNSKSKGNPAQNVGVM 272

Query: 108 YYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
            Y++   ++P G    GRDL + ++ GA T+ +++ I I     +  +L LV+ YYGG V
Sbjct: 273 TYDDYGRFHPFGTLPNGRDLFTYMMGGAETTLMVTGIAIGMAGFIAALLALVSSYYGGTV 332

Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
           D  ++ L D  +S P L+L I  S V  D                       ++   N G
Sbjct: 333 DLSVLTLADGIVSIPQLLLLIMVSVVFQDHW---------------------LKSVFNGG 371

Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
            LLA++    +  WP   R  RG  L   E+ +V+AA++ G      + +H+LP ++G +
Sbjct: 372 LLLALVFG--LTTWPVLWRSLRGPALQVAEEEWVDAAKSFGQQPTVTMRKHMLPYVLGYL 429

Query: 288 LVYITLDFGGVVLMEAGLSFL--GLGATPPIADWGRIVYDGAQYFPRC-WWLVFYPGLVV 344
           L+Y ++  GG+V+  A LSFL  GLG TPP   WGR +  G  Y     W +   PGL++
Sbjct: 430 LIYASMTVGGIVIAMASLSFLGNGLGITPPTPAWGRAISQGQPYVSSASWHIALIPGLII 489

Query: 345 LLTALGWNLLGDGLRDILDPKTRRSIE 371
           ++   G N LGDG+RD +DP++    E
Sbjct: 490 VVLVTGANALGDGIRDAIDPESEGGSE 516


>gb|AAG22036.1|AF305387_3 (AF305387) OppC [Bacillus thuringiensis]
           Length = 337
           
 Score =  152 bits (381), Expect = 5e-36
 Identities = 97/346 (28%), Positives = 161/346 (46%), Gaps = 49/346 (14%)

Query: 37  RSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNF-----------FP 85
           R  L  W+ +   L +   A+IG  ++ + IL+ IFGP ++   Y              P
Sbjct: 27  RPSLTFWQDVRRRLFQHKGAMIGFVLLSLIILLAIFGPMVSKHSYKEQDLGRAKMPPKIP 86

Query: 86  TLYTSHYDNVYLAPPGSKAV-LEYYNNATI--YYPLGADHYGRDLLSLLLQGARTSFVIS 142
            +   H+    L   G+    ++ Y    I  Y+  G D  GRDL +   +G R S  I+
Sbjct: 87  VIENVHW----LPFDGTDQYGVDQYEKRDIKEYFWFGTDDLGRDLWTRTWEGTRVSLYIA 142

Query: 143 IIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFI 202
           ++     + +G+  G ++ +YGG+VD ++ R+ ++    P LI+ I    ++   + +  
Sbjct: 143 LLAAAIDLVIGVAYGGISAFYGGRVDNIMQRIMEIINGIPYLIIVILMVIIMGSGIWS-- 200

Query: 203 SSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVE 262
                                        + +AM I  W G +RI RG  L  + + YV 
Sbjct: 201 -----------------------------ITLAMAITGWIGMSRIVRGQILKLKNQEYVL 231

Query: 263 AARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRI 322
           A+R +G     ++ +H++PN++GPI+V         V  EA LSF+GLG  PP A  G +
Sbjct: 232 ASRTLGATNTQLIVKHLIPNVMGPIIVMTMFTIPSAVFGEAFLSFIGLGIQPPFASLGSL 291

Query: 323 VYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTRR 368
           V DG +       ++F P +V+ +  L +NL+ DGLRD LDPK R+
Sbjct: 292 VNDGYKSIQTYPHMMFIPAVVISILILAFNLMADGLRDALDPKMRK 337


>pir||G75529 peptide ABC transporter, permease protein - Deinococcus radiodurans
           (strain R1) >gi|6458041|gb|AAF09944.1|AE001896_9
           (AE001896) peptide ABC transporter, permease protein
           [Deinococcus radiodurans]
           Length = 339
           
 Score =  152 bits (381), Expect = 5e-36
 Identities = 100/341 (29%), Positives = 161/341 (46%), Gaps = 46/341 (13%)

Query: 47  LYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVL 106
           L  L R+P A+ G  IV++F L+ +  P +A    N    L       +Y      KA+ 
Sbjct: 25  LRKLRRNPLAVTGFVIVLLFGLMALLAPLIAKPTGNCLRDLGMETQGQIYQPGFALKAIF 84

Query: 107 ----EYYNNATIYY---------------PLGADHYGRDLLSLLLQGARTSFVISIIVIM 147
               E Y    + +               P G  + G ++   L+ G RT+  +S I++ 
Sbjct: 85  ASPPECYKMERVSFAQEPAPASSVTGTFAPFGTVN-GYNIFYGLIWGTRTALKMSFIIVG 143

Query: 148 FGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPV 207
             + +GI++G ++G+YGG VD LI  + ++  + P L+L +    +L  +      + P+
Sbjct: 144 ITLSIGILIGAISGFYGGWVDGLIQGIINVIYALPPLVLTVTILTILRAKNPGGDPTGPI 203

Query: 208 IEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAI 267
           I                          AM I  W  YAR+ RG  L  R+  YV+AARA+
Sbjct: 204 I-------------------------FAMCITGWATYARVIRGDILKTRQLEYVDAARAL 238

Query: 268 GLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV-YDG 326
           G     ++ RH++PN +  +     L    V L  A LSFLGLG     ++WG+++ +  
Sbjct: 239 GARDMRMILRHVVPNSLTTVFTLAVLALATVPLSVAALSFLGLGFESGYSEWGQLIDFAR 298

Query: 327 AQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
           A   P  W+++ +P + ++L +L +NL GDGLRD LDPKTR
Sbjct: 299 AWLKPDYWYVLAFPAIFIVLFSLAFNLFGDGLRDALDPKTR 339


>gb|AAC46286.1| (AF000366) oligopeptide permease homolog C [Borrelia burgdorferi]
           Length = 349
           
 Score =  152 bits (380), Expect = 7e-36
 Identities = 104/378 (27%), Positives = 168/378 (43%), Gaps = 86/378 (22%)

Query: 34  EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYD 93
           E+N S+LE      +  N+   A   LF++  +I + I  P L  +KY+   T    H D
Sbjct: 9   EENNSKLERRAWSRFKENKL--AFGSLFVIGFYISIAILQPILPIYKYH---TQIVEHSD 63

Query: 94  NVYLAPPGSKAVLE-YYNNATIY------------------------------------- 115
                PP  +A  E +YN    +                                     
Sbjct: 64  ----LPPSFQAAGELWYNKEKKFIEKLAKKEKREINEEELKKLEDIKRKIENEVQIIDKK 119

Query: 116 --------YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
                   Y LG D+ GRDLL  L+QG++ S  +  I     + +G ILG +AG++GG  
Sbjct: 120 EVKIHKRVYLLGTDNLGRDLLVRLIQGSQISLSVGFIGAFLSMIIGTILGSIAGFFGGLP 179

Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
           D++I +  ++  + P L++ I   A++              E+ ++ +F           
Sbjct: 180 DKIITKTIEILYALPYLLIVIILMAIM--------------ERSIIGLF----------- 214

Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
                 +A+  V W   AR+ RG   +     +++AA+ +G   + I+ +H++PN IG I
Sbjct: 215 ------IALAFVSWLTVARVVRGQVQSLSSSEFIQAAKTLGATNQRIILKHLIPNSIGMI 268

Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
           +++ T+     ++ EA LSFLGLG + P+  WG +V +G   F    W VF P +V+ + 
Sbjct: 269 VIFTTIRVPSFIMAEAFLSFLGLGISAPMTSWGELVQNGIATFVEYPWKVFIPAIVMTIF 328

Query: 348 ALGWNLLGDGLRDILDPK 365
            L  N LGDGLRD  DPK
Sbjct: 329 LLFMNFLGDGLRDAFDPK 346


>pir||G72215 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4982326|gb|AAD36813.1|AE001813_5 (AE001813)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 289
           
 Score =  152 bits (379), Expect = 9e-36
 Identities = 97/339 (28%), Positives = 157/339 (45%), Gaps = 53/339 (15%)

Query: 33  MEKNRSR-LEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSH 91
           + KN++  +  W+       ++  A+IG   V+I I + I  P++AP+ Y+        H
Sbjct: 2   LRKNKTESIGYWKAFWLRFKKNKMAVIGGVFVLILIALAILAPYIAPYPYD------EPH 55

Query: 92  YDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVP 151
           Y   +  P                +  G D  GRDL S +L   R + +I        + 
Sbjct: 56  YIRAFEGPSKD-------------FIFGTDALGRDLFSRILYSLRNACIIGFGSQFVVLI 102

Query: 152 LGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKI 211
           +G ILG VAG+ GG +D+ IM + D+  +FP  +    F+ +L   L             
Sbjct: 103 IGGILGAVAGFKGGWIDKFIMSIVDIMFAFPTFL----FNVILVTAL------------- 145

Query: 212 VLAIFALDVREAGNLGR-LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLP 270
                          GR L  + +A+ +  W G AR+ RG  L  +   +VEAA+A G  
Sbjct: 146 ---------------GRGLFTIFLAIGLTGWAGMARLVRGQVLYLKNSEFVEAAKAAGAS 190

Query: 271 TRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYF 330
           T  I+ +HILPN+IGPILV +     G ++ E+GL+ +G+G  PP+  WG ++ +G    
Sbjct: 191 TFYIIRKHILPNMIGPILVNLAFGVPGAMMTESGLAVIGMGVRPPMPSWGNLIGEGIGMM 250

Query: 331 PRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTRRS 369
                L+ +P +    T + +  L DGLRD  +P++  S
Sbjct: 251 MAFPHLLIFPAVTFAFTLISFTFLADGLRDAFNPRSEIS 289


>gb|AAC69844.1| (AF076684) oligopeptide transporter putative membrane permease
           domain [Staphylococcus aureus]
           Length = 276
           
 Score =  151 bits (377), Expect = 2e-35
 Identities = 80/245 (32%), Positives = 131/245 (52%), Gaps = 31/245 (12%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG D YGRDL + ++ GAR++  ++++ ++  V +G+ LGL AGY  G ++ L++R  D+
Sbjct: 52  LGTDDYGRDLFTRIIIGARSTLFVTVLTLIAIVVIGVTLGLFAGYKKGWIERLVLRFIDV 111

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
            LS P  I+ IA ++     L                                 +++++ 
Sbjct: 112 GLSIPEFIIMIALASFFQPSLWN-------------------------------LVISIT 140

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
           ++ W  Y R+TR    +E  K Y++ A+   +PTRTIL RH+ P II  I+V + +DFG 
Sbjct: 141 LIKWMNYTRLTRSIVNSEMNKPYIKMAQLFHVPTRTILIRHLTPKIIPAIIVLMVVDFGK 200

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDG 357
           ++L  + LSF+GLGA PP  +WG ++  G  +      ++  P  V+ +T L +NL GD 
Sbjct: 201 IILYISSLSFIGLGAQPPTPEWGAMLQQGRDFISSHPIMLIAPASVIAITILIFNLTGDA 260

Query: 358 LRDIL 362
           LRD L
Sbjct: 261 LRDRL 265


>gb|AAG09259.1| (AF176664) EppC [EDTA-degrading bacterium BNC1]
           Length = 308
           
 Score =  150 bits (374), Expect = 4e-35
 Identities = 103/329 (31%), Positives = 157/329 (47%), Gaps = 54/329 (16%)

Query: 43  WRLM---LYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAP 99
           WR +    ++   S  +L+ L ++++F   G  GP    WKY++   + TS       AP
Sbjct: 30  WRAIARKFFSYKASVVSLVILILIVLFAFAG--GPL---WKYSY--AVSTSDLS----AP 78

Query: 100 PGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
           P  +            +P G DH G DL++ +++G + S  I+  V +    +G I G V
Sbjct: 79  PSWE------------HPFGTDHLGYDLMAGVMRGTQRSLSIAGTVAVLATLIGSIWGAV 126

Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
           AGY GG  D L+MR+ D+ + FP L +A            AF++                
Sbjct: 127 AGYVGGWADSLLMRIVDLIMIFPLLAVA------------AFLARQS------------- 161

Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
             + G  G LL  +V +  + W   AR+ R   L+ R + +V AA+  G     I+FRH+
Sbjct: 162 --QGGEHGWLLVALV-LATLSWTVLARVVRSVVLSLRTREFVIAAKIAGAGPVRIIFRHL 218

Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFY 339
           LPN +GPI+V  T+     +L E  LS+LG G  PP    G ++           WL ++
Sbjct: 219 LPNTVGPIIVAATVLVASAILSETALSYLGFGVQPPDTSLGLLINQAQGAISTRPWLFYF 278

Query: 340 PGLVVLLTALGWNLLGDGLRDILDPKTRR 368
           PGL ++L AL    +GDGLR  LDPK +R
Sbjct: 279 PGLFIILIALCVAFIGDGLRAALDPKQQR 307


>emb|CAC05749.1| (AL391751) putative peptide transport system integral membrane
           protein [Streptomyces coelicolor]
           Length = 305
           
 Score =  149 bits (373), Expect = 5e-35
 Identities = 95/325 (29%), Positives = 153/325 (46%), Gaps = 49/325 (15%)

Query: 43  WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
           W    + L R+P  +I   ++I  I++ I+            P+L  S         P  
Sbjct: 30  WTDAWHDLRRNPVFIISALVIIFLIVISIW------------PSLIAS-------GSPLK 70

Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
             + +    +   +P G +  G D+ +  + GARTS  + I+  +    LG +LG +AG+
Sbjct: 71  CDLAKAQEGSQPGHPFGFNGQGCDVYTRTVYGARTSVAVGILATLGVALLGSVLGGLAGF 130

Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
           +GG  D ++ R+TD+F + P ++  +   +V+        +  PVI  IVL         
Sbjct: 131 FGGGGDAVLSRITDIFFAIPVVLGGLVLLSVITSN-----TIWPVIGFIVL--------- 176

Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
                           + WP  +RI RGS +T ++  YV+AARA+G     +L RHI PN
Sbjct: 177 ----------------LGWPQISRIARGSVITAKQNDYVQAARALGASNSRLLLRHIAPN 220

Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
            + P++V  T+  G  + +EA LSFLG+G  PP   WG  +   A Y       + +P  
Sbjct: 221 AVAPVIVVATIALGTYISLEATLSFLGVGLKPPSVSWGIDISSAAPYVRNAPHALLWPSG 280

Query: 343 VVLLTALGWNLLGDGLRDILDPKTR 367
            + +T L + +LGD +RD LDPK R
Sbjct: 281 ALAITVLAFIMLGDAVRDALDPKLR 305


>pir||D72300 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981606|gb|AAD36140.1|AE001766_6 (AE001766)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 367
           
 Score =  148 bits (371), Expect = 8e-35
 Identities = 107/390 (27%), Positives = 171/390 (43%), Gaps = 83/390 (21%)

Query: 29  KKDWMEKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPW---KYNF-- 83
           K++ ME+      +W+L+ +   +   A+IG  +++I  +  IF  F AP+   KYN+  
Sbjct: 3   KREQMEEKFYYASQWQLIWWRFRKHKLAVIGGVVLLIIYVFAIFCEFFAPYDPNKYNYRY 62

Query: 84  -------------------FPTLYTSHYD-----NVYLAPPGSKAVLEYYNNATIY---- 115
                              F   YT   D      +Y         ++++     Y    
Sbjct: 63  PYAPPQRIHFFHEGKFIGPFVYGYTYTVDLETLRRIYKEDKSKIFKIKFFVRGDEYKFWG 122

Query: 116 ----------------YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
                           + LG D  GRD+LS ++ GAR S  I +I +     LG+ +G +
Sbjct: 123 IWKTNIHFIGVEDGHMFLLGTDSLGRDMLSRIIYGARISTSIGLIGVFLSFILGVAIGGI 182

Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
           +GY+GG VD  I R  ++  S P + L +A SA LP                        
Sbjct: 183 SGYFGGAVDNFIQRTIEIIKSIPTIPLWLALSAALPQNWPP------------------- 223

Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
                 L     +++ + +  W   AR+ R   L+ RE+ +V AA+ +G     I+FRH+
Sbjct: 224 ------LRVYFVIVIILSLTGWTDLARVVRSRFLSLREEDFVMAAKFMGASEARIIFRHM 277

Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG-----AQYFPRCW 334
           LP+ +  ++  ITL   G++L E  LSFLGLG  PP+  WG ++ +         +P  W
Sbjct: 278 LPSFMSHLIASITLSIPGMILGETSLSFLGLGLRPPVISWGVLLQEAQNLTVVALYP--W 335

Query: 335 WLVFYPGLVVLLTALGWNLLGDGLRDILDP 364
            L+  P + V+ T L +N +GDGLRD  DP
Sbjct: 336 LLI--PVVFVITTVLCFNFVGDGLRDAADP 363


>dbj|BAB04288.1| (AP001509) nickel transport system (permease) [Bacillus halodurans]
           Length = 277
           
 Score =  148 bits (370), Expect = 1e-34
 Identities = 92/319 (28%), Positives = 158/319 (48%), Gaps = 62/319 (19%)

Query: 46  MLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVY------LAP 99
           M  AL      ++   I+ +F L+ I  P++AP             +D +       L P
Sbjct: 5   MQIALKSQKTVVVCSVILFVFFLLAILAPWIAP-------------HDPIQVNLALKLLP 51

Query: 100 PGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLV 159
           P  +            YPLG D  GR  LS LL GAR S   + ++ +  + +G+++G +
Sbjct: 52  PSWE------------YPLGTDQLGRCNLSRLLFGARVSLGFATLIFISSLGIGLLVGAI 99

Query: 160 AGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALD 219
           AGY GG +D ++MR  +  ++FP L+L +                       ++ +F   
Sbjct: 100 AGYRGGWIDSVLMRFCEGVMAFPNLVLVLG----------------------LVGLFG-- 135

Query: 220 VREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHI 279
                    L  V++A+++V W  YAR+ R   ++ +E+ ++ AAR  G     I+ RHI
Sbjct: 136 -------PGLWQVVLALVMVQWVYYARMFRSMIVSLKEQNFITAARISGSSPWKIIRRHI 188

Query: 280 LPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFY 339
           +PN++ PI+V  TL+ G  ++  + LSFLGLG  PP  +WG ++++G  +      L+ Y
Sbjct: 189 IPNVLPPIVVIGTLEMGWAIMDISALSFLGLGIQPPTPEWGAMIHEGKSFIRSHPELMLY 248

Query: 340 PGLVVLLTALGWNLLGDGL 358
           PG+++LL  + +N+LG+ L
Sbjct: 249 PGIMILLVVMTFNVLGESL 267


>gb|AAF73092.1|AF103793_3 (AF103793) transmembrane protein OppC [Listeria monocytogenes]
           Length = 344
           
 Score =  148 bits (369), Expect = 1e-34
 Identities = 93/339 (27%), Positives = 164/339 (47%), Gaps = 55/339 (16%)

Query: 50  LNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFP--TLYTSHYDNVYLAPP------- 100
           + ++  AL+ L ++ + I++ I GP+L+    N  P   +     +N  L P        
Sbjct: 39  IRKNKAALVSLIVLALVIIMAIVGPYLS---QNLGPEHNINRQITENASLPPKVQGFENM 95

Query: 101 ----GSKAV----LEYYNNATI----YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMF 148
               G +++    ++ Y    I    YY LG+D  GRD  + +  G R S +I+++  + 
Sbjct: 96  PFWNGHQSIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALC 155

Query: 149 GVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVI 208
            + +G+  GL++GY GG+VD  + R+ ++  + P L++ I    +L              
Sbjct: 156 DLVIGVAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLIL-------------- 201

Query: 209 EKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIG 268
                        E G    ++++I+A+ +  W   AR+ RG  L  + + +V A+  +G
Sbjct: 202 -------------EPG----IVSIIIAIAMTSWITMARVVRGQVLKRKNQEFVMASMTLG 244

Query: 269 LPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ 328
             T  IL +H++PNI G I++ I       +  EA LSF+GLG   P A  G +V DG +
Sbjct: 245 ESTPKILIKHLIPNISGIIIINIMFSIPSAIFFEAFLSFIGLGLPAPAASLGVLVNDGYK 304

Query: 329 YFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
                 +++ YP +V+ +  + +NL+ DGLRD  DPK R
Sbjct: 305 TLQVLPYMILYPCIVLCIIMIAFNLIADGLRDAFDPKMR 343


>gi|10955081 agaC [Agrobacterium tumefaciens] >gi|11277275|pir||T45530 probable
           oligopeptide transport protein agaC [imported] -
           Agrobacterium tumefaciens plasmid pTi15955
           >gi|2665706|gb|AAB88466.1| (AF242881) agaC
           [Agrobacterium tumefaciens]
           Length = 275
           
 Score =  146 bits (366), Expect = 3e-34
 Identities = 99/322 (30%), Positives = 155/322 (47%), Gaps = 50/322 (15%)

Query: 48  YALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLE 107
           + L+R P     L +V+  + V I GP +AP               N  LA     AV  
Sbjct: 4   FVLSRRPLIAASLIVVLAVLTVAILGPLIAP---------------NDPLAI-NQNAV-- 45

Query: 108 YYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKV 167
            +  ++  + LG D +GRD+LS LL G R + ++++I  +     G   G++  Y    +
Sbjct: 46  -HQPSSAQHWLGTDEFGRDILSRLLIGIRPTMLVAVISTIIAAVGGTACGIIGAYSRPTI 104

Query: 168 DELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLG 227
              +MR  D+ LSFPA                           I+LA+ A+    +G   
Sbjct: 105 SFFVMRAVDIMLSFPA---------------------------ILLALLAVGFWRSGVAS 137

Query: 228 RLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPI 287
             L+V++ +I +  P +AR+ + + L    + +VEA  A+G     ++ R ILPNI+ P+
Sbjct: 138 --LSVVIGIIFI--PQFARVAQSAALQVISQEFVEAEHAMGARYLRVVMRAILPNILSPL 193

Query: 288 LVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLT 347
           +V  TL     +L+E+GLSFLGLG  PP   WG+++     Y  +    V +P L + LT
Sbjct: 194 VVQATLTIAAAILLESGLSFLGLGIVPPEPSWGQMIGTARGYLGQNPMYVVWPSLCLALT 253

Query: 348 ALGWNLLGDGLRDILDPKTRRS 369
            L  N+LGD LRD LDP+ R +
Sbjct: 254 VLAINVLGDALRDHLDPRLREN 275


>pir||B75142 oligopeptide transport integral membrane protein. PAB2363 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458362|emb|CAB49851.1| (AJ248285) OLIGOPEPTIDE
           TRANSPORT INTEGRAL MEMBRANE PROTEIN. [Pyrococcus abyssi]
           Length = 306
           
 Score =  146 bits (366), Expect = 3e-34
 Identities = 97/322 (30%), Positives = 152/322 (47%), Gaps = 47/322 (14%)

Query: 58  IGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYP 117
           +G  IVII  L+ +FGP + P+    +   Y   + N     PG+ A L   ++ TIY P
Sbjct: 18  VGFIIVIIMALIALFGPLITPFDNMGY---YPLKFGNTTYPKPGTPA-LPPMSSDTIYGP 73

Query: 118 ---------LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVD 168
                    LG D +GRD+ + L  G R+SF+I I        LG+++G +AGY GG +D
Sbjct: 74  EGIVNVTHYLGTDSFGRDIYAQLTYGMRSSFLIGITAGGLATILGLLIGFIAGYKGGWID 133

Query: 169 ELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGR 228
           E++M +T++ L  P + L I  +A LP R          IE +++ + A           
Sbjct: 134 EVLMMITNIMLVIPTMALLIIIAAYLPYRGVG-------IESVIIGLTA----------- 175

Query: 229 LLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPIL 288
                       WP  AR  R  TL+ + + ++  A+  GL    I+F  I+PNII  + 
Sbjct: 176 ------------WPWTARAVRAQTLSLKNREFIHLAKLSGLGDMKIIFDQIMPNIISYVF 223

Query: 289 VYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFP---RCWWLVFYPGLVVL 345
           +   L FGG +L   GL F+GLG T  ++  G ++     +       WW    PGLV+ 
Sbjct: 224 MVFILQFGGSILAAVGLDFIGLGPTRGMS-LGIMLQQAVLWNAVTLGYWWWAIPPGLVIA 282

Query: 346 LTALGWNLLGDGLRDILDPKTR 367
           +   G   +  GL ++ +P+ R
Sbjct: 283 ILITGLYFINTGLDEVFNPRLR 304


>sp|P33592|NIKC_ECOLI NICKEL TRANSPORT SYSTEM PERMEASE PROTEIN NIKC
           >gi|628768|pir||S39596 nikC protein - Escherichia coli
           >gi|581141|emb|CAA51661.1| (X73143) NikC [Escherichia
           coli] >gi|912461|gb|AAB18453.1| (U00039) nikC
           [Escherichia coli] >gi|1789889|gb|AAC76503.1| (AE000423)
           transport of nickel, membrane protein [Escherichia coli
           K12]
           Length = 277
           
 Score =  145 bits (363), Expect = 7e-34
 Identities = 85/247 (34%), Positives = 129/247 (51%), Gaps = 31/247 (12%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG DH GRD+ S L+   R S    +  ++  + LG+++G  AG  GG+VD+  MR+ DM
Sbjct: 54  LGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGRVDQATMRVADM 113

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
           F++FP  IL+                            F + V   G    L  VI+A+ 
Sbjct: 114 FMTFPTSILSF---------------------------FMVGVLGTG----LTNVIIAIA 142

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
           +  W  YAR+ R   ++ R++ +V A+R  G     +   H+   +I  +LV  TLD G 
Sbjct: 143 LSHWAWYARMVRSLVISLRQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGH 202

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDG 357
           ++L  AG+SFLGLG T P A+WG ++ D  QY       +F+PGL + ++ + +NL+GD 
Sbjct: 203 MMLHVAGMSFLGLGVTAPTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDA 262

Query: 358 LRDILDP 364
           LRD LDP
Sbjct: 263 LRDHLDP 269


>pir||T35981 probable peptide transport permease - Streptomyces coelicolor
           >gi|4464266|emb|CAB37469.1| (AL035559) putative peptide
           transport permease [Streptomyces coelicolor A3(2)]
           Length = 317
           
 Score =  144 bits (359), Expect = 2e-33
 Identities = 91/312 (29%), Positives = 152/312 (48%), Gaps = 52/312 (16%)

Query: 57  LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
           + GL  +++F+LV +  P               S  D+V  AP       +   + +  +
Sbjct: 50  VFGLATLVLFVLVALTAPLTVG-----------SDVDSVTDAPG------QPLESPSGRF 92

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
           PLG D +GR LL LL+ G+R S ++ ++  +  V +G ++G+ AG++ G    ++MR+TD
Sbjct: 93  PLGTDQFGRSLLGLLIWGSRVSLLVGLLAAVLSVLIGALIGITAGHFRGWYATVMMRITD 152

Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
            FL  P L+LAI  + VL                            + +LG    +++A+
Sbjct: 153 WFLVMPTLVLAIVLATVL----------------------------SRSLG---TIVLAI 181

Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
            +  WP  AR+ R  TL    + Y+E A+A+G     I+ RH+LPN++  IL   TL   
Sbjct: 182 GVTTWPTTARLVRAQTLAVESRPYIERAKALGGGHWHIMSRHVLPNVMPLILAQTTLIIS 241

Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ---YFPRCWWLVFYPGLVVLLTALGWNL 353
             +L EA L+FLGLG  P +  WG ++ D  +        WW +  PG+ + + AL + L
Sbjct: 242 SAILAEATLAFLGLG-DPAVVSWGGLLQDAREAGSVSSGDWWYLVPPGIGIAVVALAFTL 300

Query: 354 LGDGLRDILDPK 365
            G  +  +L+P+
Sbjct: 301 CGRAVEAVLNPR 312


>pir||T44599 oligopeptide transport system permease protein [imported] -
           Rhizobium meliloti megaplasmid 2 (fragment)
           >gi|4929437|gb|AAD33993.1|AF148072_1 (AF148072)
           oligopeptide transport system permease protein
           [Sinorhizobium meliloti]
           Length = 289
           
 Score =  143 bits (356), Expect = 5e-33
 Identities = 84/252 (33%), Positives = 131/252 (51%), Gaps = 34/252 (13%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG D  GRD+LS ++ GAR S  I ++ I     LGI++G +AGY+GG  D ++ RL ++
Sbjct: 65  LGTDRLGRDVLSRIIYGARISLTIGLLGITVSFVLGIVIGGLAGYHGGIFDLVVQRLIEV 124

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
             S P++ L ++ +A++P      +                           L + V + 
Sbjct: 125 LQSIPSIPLWLSLAAIMPATWSPLLI-------------------------YLGITVILG 159

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
           ++ W G AR  R   L  RE+ YV AA+ +G  +  I+ RH++P  +  ++   T+   G
Sbjct: 160 LLDWTGLARAVRSKLLALREEDYVLAAQLMGARSGRIIGRHLVPGFMSHLIATATISIPG 219

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQ-----YFPRCWWLVFYPGLVVLLTALGWN 352
           ++L E  LSFLGLG  PPI  WG ++ +        ++P   WL+F P + V+L  L +N
Sbjct: 220 MILGETALSFLGLGLRPPITSWGILLTEAKSVSVIAFYP---WLLF-PTIPVILVILAFN 275

Query: 353 LLGDGLRDILDP 364
            LGDGLRD  DP
Sbjct: 276 FLGDGLRDAADP 287


>pir||H75026 oligopeptide abc transporter, permease protein (appc) PAB1195 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5459168|emb|CAB50654.1| (AJ248288) oligopeptide ABC
           transporter, permease protein (appC) [Pyrococcus abyssi]
           Length = 477
           
 Score =  141 bits (353), Expect = 1e-32
 Identities = 87/258 (33%), Positives = 128/258 (48%), Gaps = 35/258 (13%)

Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
           Y  +G D  GRDL + L+ G R S +I I V +  V  G++ G+ + Y GG  DE++MR 
Sbjct: 250 YGYMGTDDKGRDLWAGLVWGTRISLIIGISVAVLSVLFGVLYGVTSAYLGGWTDEMMMRF 309

Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
            +   S P L + I  ++     +                               L +IV
Sbjct: 310 QEFMASIPTLPILIMLASAFKGHVT------------------------------LGIIV 339

Query: 235 AMIIVW-WPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITL 293
            +++V+ W G AR++R   L  +E+ YVEAA A+G  T  I+F+HI+P ++      I L
Sbjct: 340 LLLVVFGWVGIARVSRSMALQIKEQTYVEAAIALGAGTGRIIFKHIMPQLLPYAFAQIAL 399

Query: 294 DFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGA---QYFPRCWWLVFYPGLVVLLTALG 350
              G VL EAGLS+LGLG  P    WG+I++D           WW V  PGL + L +L 
Sbjct: 400 SVPGAVLTEAGLSYLGLG-DPTAVTWGQILHDAQAANATINGYWWWVIPPGLAIALVSLT 458

Query: 351 WNLLGDGLRDILDPKTRR 368
           + LLG  L  +L+P+ RR
Sbjct: 459 FVLLGTALDRVLNPRLRR 476


>pir||D70431 oligopeptide transport system permease - Aquifex aeolicus
           >gi|2983881|gb|AAC07433.1| (AE000743) oligopeptide
           transport system permease [Aquifex aeolicus]
           Length = 331
           
 Score =  141 bits (353), Expect = 1e-32
 Identities = 87/249 (34%), Positives = 129/249 (50%), Gaps = 36/249 (14%)

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           Y LG D  GRD+ S LL G R S  +++I       +G ++G ++GY+GGKVD LIMRL 
Sbjct: 102 YLLGTDKLGRDVFSRLLYGGRYSLGVALIGTFTTFFIGALVGGISGYFGGKVDTLIMRLV 161

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           ++ +S PA  L ++  +V P  L +                          G +  +IV 
Sbjct: 162 EILMSIPAFYLLLSLRSVFPLELSS--------------------------GEVFLIIVF 195

Query: 236 MI-IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
           ++  + W G AR+ RG  L+ REK +V AA+  G  +  I+F+HILPN    ++V  T+ 
Sbjct: 196 ILSFLGWAGLARVVRGMVLSIREKEFVLAAKTYGASSLRIIFKHILPNTYFYLIVSATMS 255

Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ-----YFPRCWWLVFYPGLVVLLTAL 349
               +L EA LS LGLG   P+  WG ++ +        ++P   WL   PG+ + LT L
Sbjct: 256 IPAFILGEASLSLLGLGIQEPVPSWGNMLSEVRNVSVLTFYP---WLA-SPGVAIFLTIL 311

Query: 350 GWNLLGDGL 358
            +NLLGD L
Sbjct: 312 AFNLLGDAL 320


>pir||H71211 probable oligopeptide transport system permease protein appC -
           Pyrococcus horikoshii >gi|3258404|dbj|BAA31087.1|
           (AP000007) 474aa long hypothetical oligopeptide
           transport system permease protein appC [Pyrococcus
           horikoshii]
           Length = 474
           
 Score =  137 bits (341), Expect = 3e-31
 Identities = 90/257 (35%), Positives = 125/257 (48%), Gaps = 33/257 (12%)

Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
           Y  LG D  GRDL + L+ G+R S  + I   +  V +GI  G+ A Y+GG  DEL+MR 
Sbjct: 247 YGYLGTDDKGRDLFAGLVWGSRVSLAVGISTAVLSVLIGIFYGVAAAYFGGWTDELMMRF 306

Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
            +   S P L + I         L  +   H  + +IVL               LLAV  
Sbjct: 307 QEFMASIPTLPILIL--------LGTYFGGHIQLWQIVL---------------LLAVF- 342

Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
                 W G AR+ R      +E+ YVEAA A+G  T  I+F+H++P ++      + L 
Sbjct: 343 -----GWVGIARVARSMAYQIKEQTYVEAAIALGAGTGRIIFKHMVPQLLPYAFAQMALS 397

Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYD---GAQYFPRCWWLVFYPGLVVLLTALGW 351
             G VL EA LSFLGLG  P    WG+I++D           WW V  PG+ + L AL +
Sbjct: 398 VPGAVLAEASLSFLGLG-DPTQVTWGQILHDAQVAGAAVNGYWWWVIPPGIAIALVALTF 456

Query: 352 NLLGDGLRDILDPKTRR 368
            L+G  L  +L+P+ RR
Sbjct: 457 VLIGTALDRVLNPRLRR 473


>pir||A70789 probable peptidetransport system permease - Mycobacterium
           tuberculosis (strain H37RV) >gi|2960088|emb|CAA17986.1|
           (AL022121) dppC [Mycobacterium tuberculosis]
           Length = 266
           
 Score =  137 bits (341), Expect = 3e-31
 Identities = 88/284 (30%), Positives = 132/284 (45%), Gaps = 37/284 (13%)

Query: 84  FPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISI 143
           FP+L+T+  D  Y  P  S          +  +  G D  G D+ S  + GAR S  + +
Sbjct: 16  FPSLFTAA-DPTYADPSQSMLA------PSAAHWFGTDLQGHDIYSRTVYGARASVTVGL 68

Query: 144 IVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFIS 203
              +    +G  LG +AG+YG  +D ++ R+TD+FL  P L+ AI    V+  R      
Sbjct: 69  GATLAVFVVGGALGALAGFYGSWIDAVVSRVTDVFLGLPLLLAAIVLMQVMHHRT----- 123

Query: 204 SHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEA 263
                                    +  VI  + +  WP  ARI RG+ L  R   YV A
Sbjct: 124 -------------------------VWTVIAILALFGWPQVARIARGAVLEVRASDYVLA 158

Query: 264 ARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIV 323
           A+A+GL    IL RH LPN +GP++   T+  G  ++ EA LS+LG+G    +  WG  +
Sbjct: 159 AKALGLNRFQILLRHALPNAVGPVIAVATVALGIFIVTEATLSYLGVGLPTSVVSWGGDI 218

Query: 324 YDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
                       ++FYP   + +T L + ++GD LRD LDP +R
Sbjct: 219 NVAQTRLRSGSPILFYPAGALAITVLAFMMMGDALRDALDPASR 262


>dbj|BAA97045.1| (AB015765) SapC [Vibrio alginolyticus]
           Length = 295
           
 Score =  136 bits (340), Expect = 3e-31
 Identities = 95/308 (30%), Positives = 141/308 (44%), Gaps = 45/308 (14%)

Query: 56  ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
           A+ GL+ ++  +L+ IF P LAP+                 L PP       +    TI 
Sbjct: 29  AMFGLWCLVFIVLITIFAPLLAPFD--------AQAQSGELLVPPS------WAPAGTID 74

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           Y LG D  GRD+LS L+ G++ +F  ++ +      +G ++G++AG   G +   +  L 
Sbjct: 75  YFLGTDDLGRDILSRLIMGSQLTFGAAVAITAIAAVVGCLIGVLAGMTKGLLSSTLNHLL 134

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D  +S P+L+LAI F A L                             G    LLA+ +A
Sbjct: 135 DTVMSIPSLLLAIIFVAFLG---------------------------FGGFNILLAICLA 167

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
           +I    P + R    +  TE EK Y+ AAR  G     +L+  ILPNI+  I   ITL  
Sbjct: 168 LI----PRFIRSVYIAVHTEVEKDYIMAARLDGANDFYLLWSSILPNILTVIAAEITLAL 223

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
              +L    L FLGLGA  P  +WG I+ D  +      W V  PGL ++ T +  NL+G
Sbjct: 224 SAAILDITALGFLGLGAQAPSTEWGAILGDSVELIYIAPWTVTLPGLTIMFTVITLNLVG 283

Query: 356 DGLRDILD 363
           +G+R  L+
Sbjct: 284 EGVRQALN 291


>gb|AAB38742.1| (U78885) transport system permease homolog [Listeria monocytogenes]
           Length = 335
           
 Score =  135 bits (337), Expect = 8e-31
 Identities = 88/331 (26%), Positives = 159/331 (47%), Gaps = 55/331 (16%)

Query: 50  LNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPT--LYTSHYDNVYLAPP------- 100
           + ++  AL+ L ++ + I++ I GP+L+    N  P   +     +N  L P        
Sbjct: 39  IRKNKAALVSLIVLALVIIMAIVGPYLSQ---NLGPKHDINRQITENASLPPKVQGFENM 95

Query: 101 ----GSKAV----LEYYNNATI----YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMF 148
               G +++    ++ Y    I    YY LG+D  GRD  + +  G R S +I+++  + 
Sbjct: 96  PFWNGHQSIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALC 155

Query: 149 GVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVI 208
            + +G+  GL++GY GG+VD  + R+ ++  + P L++ I    +L              
Sbjct: 156 DLIIGVAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLIL-------------- 201

Query: 209 EKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIG 268
                        E G    ++++I+A+ +  W   AR+ RG  L  + + +V A+  +G
Sbjct: 202 -------------EPG----IVSIIIAIAMTSWITMARVVRGQVLKLKNQEFVMASMTLG 244

Query: 269 LPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ 328
             T  IL +H++PNI G I++ I       +  EA LSF+GLG   P A  G +V DG +
Sbjct: 245 ESTPKILIKHLIPNISGIIIINIMFSIPSAIFFEAFLSFIGLGLPAPAASLGVLVNDGYK 304

Query: 329 YFPRCWWLVFYPGLVVLLTALGWNLLGDGLR 359
                 +++ YP +V+ +  + +NL+ DGLR
Sbjct: 305 TLQVLPYMILYPCIVLCIIMIAFNLIADGLR 335


>sp|Q10623|YC82_MYCTU PUTATIVE PEPTIDE TRANSPORT PERMEASE PROTEIN RV1282C
           >gi|7442464|pir||D70729 probable peptide transport
           system permease - Mycobacterium tuberculosis (strain
           H37RV) >gi|3261616|emb|CAB01002.1| (Z77164) oppC
           [Mycobacterium tuberculosis]
           Length = 291
           
 Score =  134 bits (335), Expect = 1e-30
 Identities = 85/316 (26%), Positives = 149/316 (46%), Gaps = 48/316 (15%)

Query: 52  RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
           R+  A+  L  +++  +     P L P+ Y+           N  L PPG+K        
Sbjct: 17  RNRAAVASLAALLLLFVSAYALPPLLPYSYDDLDF-------NALLQPPGTK-------- 61

Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
               + LG +  G+DLL+  L+G + S +I + V +    +   +G ++GY+GG  D  +
Sbjct: 62  ----HWLGTNALGQDLLAQTLRGMQKSMLIGVCVAVISTGIAATVGAISGYFGGWRDRTL 117

Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
           M + D+ L  P+ IL     A++  R +                         N   ++ 
Sbjct: 118 MWVVDLLLVVPSFILI----AIVTPRTK-------------------------NSANIMF 148

Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
           +++ +    W   +R+ RG T++ RE+ ++ AAR +G+ +R I+  H++PN+   +++  
Sbjct: 149 LVLLLAGFGWMISSRMVRGMTMSLREREFIRAARYMGVSSRRIIVGHVVPNVASILIIDA 208

Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
            L+    +L E GLSFLG G  PP    G ++ DG        W+  +P  +++L  +  
Sbjct: 209 ALNVAAAILAETGLSFLGFGIQPPDVSLGTLIADGTASATAFPWVFLFPASILVLILVCA 268

Query: 352 NLLGDGLRDILDPKTR 367
           NL GDGLRD LDP +R
Sbjct: 269 NLTGDGLRDALDPASR 284


>gi|10954709 hypothetical ABC-transporter gene~similar to dppC gene
           [Agrobacterium rhizogenes] >gi|8918709|dbj|BAA97774.1|
           (AB039932) hypothetical ABC-transporter gene~similar to
           dppC gene [Agrobacterium rhizogenes]
           >gi|10567373|dbj|BAB16182.1| (AP002086) hypothetical
           ABC-transporter gene~similar to dppC gene [Agrobacterium
           rhizogenes]
           Length = 305
           
 Score =  134 bits (333), Expect = 2e-30
 Identities = 82/243 (33%), Positives = 115/243 (46%), Gaps = 31/243 (12%)

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           Y LG D  GRD+L   L G   S  I +  ++    +G  LGL+AG+ GG +D +IMRLT
Sbjct: 82  YVLGTDQLGRDVLMRCLVGLCYSLFIGVTTVILMFIVGCSLGLLAGFRGGWLDTVIMRLT 141

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D  LS P +ILAI    V          S P +  I+L +        G  G        
Sbjct: 142 DAQLSIPMIILAITILGV----------SRPTVPAIILVL--------GLSG-------- 175

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
                WP YAR+ R   L ER + YV   R +G     I+   + P ++ PI     LD 
Sbjct: 176 -----WPLYARVARSVALGERNRGYVLGERVLGASDLRIMLLFVAPVVLPPIAFVAVLDI 230

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
             +++ E+ L FLGLG  PP   +G ++ D  +Y    WW+   PGL +L++    NL+G
Sbjct: 231 ARMMIFESILGFLGLGVQPPTPTFGNVIADSRKYLLNAWWIATMPGLFMLISLTCLNLMG 290

Query: 356 DGL 358
             L
Sbjct: 291 SAL 293


>sp|Q53192|Y4TQ_RHISN PROBABLE PEPTIDE ABC TRANSPORTER PERMEASE PROTEIN Y4TQ
           >gi|1486421|emb|CAA92399.1| (Z68203) OppC homologue
           [Rhizobium sp.] >gi|2182647|gb|AAB91870.1| (AE000098)
           Y4tQ [Rhizobium sp. NGR234]
           Length = 291
           
 Score =  134 bits (333), Expect = 2e-30
 Identities = 80/250 (32%), Positives = 125/250 (50%), Gaps = 32/250 (12%)

Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
           G D+ GRD+ +  + GAR S ++ ++  +     G+++G++AGY     D +IMR+ D  
Sbjct: 72  GTDNLGRDVFARTIYGARISLIVGLLSAVCAAVCGLLIGVIAGY-SRTFDNIIMRVMDGL 130

Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
           +S P  +LAIA  ++                                +G L   IVA+ I
Sbjct: 131 MSIPTFLLAIALLSLT----------------------------GPGIGIL---IVAIAI 159

Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
              P   R+ R   L+ R + YVEAA   G     +L+RHILP+ I P++V         
Sbjct: 160 PETPAVTRLVRSVVLSVRSRPYVEAALCGGARLPRVLWRHILPSTIPPLMVQSATVCASA 219

Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGL 358
           ++ EAGLSF+G+G    I  WG ++ +   +       +F PGL + +T L  NLLGDGL
Sbjct: 220 IMTEAGLSFIGVGVPSEIPSWGNMIANSRLFLAIAPLTIFAPGLCLAVTVLAVNLLGDGL 279

Query: 359 RDILDPKTRR 368
           RD+ DP+++R
Sbjct: 280 RDMFDPRSKR 289


>gb|AAG20459.1| (AE005118) oligopeptide transport permease protein; AppC
           [Halobacterium sp. NRC-1]
           Length = 386
           
 Score =  133 bits (332), Expect = 3e-30
 Identities = 93/337 (27%), Positives = 148/337 (43%), Gaps = 49/337 (14%)

Query: 34  EKNRSRLEEWRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYD 93
           +K R R   WR       ++  A++ L  + +  +VG+ GP L            T+ + 
Sbjct: 85  QKPRLRAFYWR----RFKKNQVAVVALGWLAVMFVVGVLGPLLIDPP--------TTQFT 132

Query: 94  NVYLAPPG-SKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPL 152
           N  + P G S  V       T  YPLG    G+ +L+L++ G R S  + +I  +F V +
Sbjct: 133 NQSVPPVGMSTTVGGVVKTGTWQYPLGTSAKGQGILTLVVYGMRVSMEVGLIATIFSVII 192

Query: 153 GIILGLVAGYYG----GKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVI 208
           G  +G VA +      G++DEL+MR  D+   FP  +L +  + +    L   I      
Sbjct: 193 GSAVGAVAAFATSVGRGRIDELLMRYVDVQSVFPDFMLLLLLTYLFGSELWMII------ 246

Query: 209 EKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIG 268
             ++   F+                       W G AR  RG  L    + Y+ AA A G
Sbjct: 247 --LLFGFFS-----------------------WEGIARTVRGEALQRASEEYITAAEASG 281

Query: 269 LPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ 328
                I+ +H++PN    I++  T+   G +L EA L+FLG  + P    WGR +  G  
Sbjct: 282 ANMLYIVRQHLIPNSANSIIISATVGIPGFILGEASLAFLGF-SDPTTYSWGRTIATGQV 340

Query: 329 YFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPK 365
                WW+   PG+ + LT L +  +G+ LRD +DP+
Sbjct: 341 NLASAWWIATIPGVFLFLTVLSFYYVGESLRDAMDPR 377


>gb|AAC69839.1| (AF076683) oligopeptide transporter putative membrane permease
           domain [Staphylococcus aureus]
           Length = 289
           
 Score =  133 bits (332), Expect = 3e-30
 Identities = 84/335 (25%), Positives = 156/335 (46%), Gaps = 52/335 (15%)

Query: 45  LMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKA 104
           ++L  L +   A+I L I+++++ +G+  P +  +  N   T                  
Sbjct: 2   IILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTA----------------- 44

Query: 105 VLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYG 164
               +   +  + LG DH GRD+L+ L+   R S +   + +   V +G ILG ++GY+ 
Sbjct: 45  --NKFAGMSFQHLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQ 102

Query: 165 GKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAG 224
           G VD LIMR  D+ L+FP+ ++ +A                      ++A+F +      
Sbjct: 103 GFVDALIMRACDVMLAFPSYVVTLA----------------------LIALFGMGAEN-- 138

Query: 225 NLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNII 284
                  +I+A I+  W  + R+ R S +      +V  A+ IG+    I+ +HI+P  +
Sbjct: 139 -------IIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMKIIHKHIMPLTL 191

Query: 285 GPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVV 344
             I +  +     ++L  +G SFLGLG   P A+WG ++ +  +       ++F PG+ +
Sbjct: 192 ADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTHPEMMFAPGIAI 251

Query: 345 LLTALGWNLLGDGLRDILDPKTRRSIEFKVKKQKK 379
           ++  + +N L D L+  +DP  R S + K++  KK
Sbjct: 252 VIIVMAFNFLSDALQIAIDP--RISSKDKLRSVKK 284


>dbj|BAB07356.1| (AP001519) oligopeptide ABC transporter (permease) [Bacillus
           halodurans]
           Length = 302
           
 Score =  131 bits (327), Expect = 1e-29
 Identities = 77/253 (30%), Positives = 122/253 (47%), Gaps = 32/253 (12%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG D+ GRD+   L+ G R S  I ++V +    +GI++GL++GYYGG +D + MR  D 
Sbjct: 79  LGTDYGGRDVFGQLIIGTRNSITIGLLVTLMSGTIGILIGLISGYYGGTIDNIFMRAVDF 138

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
           F+  P L++ I F A++P              K  +  F+L                 M 
Sbjct: 139 FMILPNLMIIIVFVALVP--------------KYSIVSFSL----------------IMT 168

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
           +  W G AR+ R   L ERE  YV+A++ +G     I+F  +LPN+   I+V +TL+   
Sbjct: 169 LFLWMGIARMIRSKALRERELDYVQASKTLGSSDLKIMFTQVLPNLSSLIIVTMTLNLAA 228

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIV--YDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
            + +E+GLSFLG G        G ++      Q     WW+     +++ +  L  N +G
Sbjct: 229 NIGIESGLSFLGFGFPESTPSLGTLISYATNPQTLEHRWWIWLPAAILIFVLMLSINNVG 288

Query: 356 DGLRDILDPKTRR 368
             L+   D + RR
Sbjct: 289 QALKRATDARQRR 301


>gb|AAC18098.1| (AF058302) membrane component of putative ABC transporter
           [Streptomyces roseofulvus]
           Length = 274
           
 Score =  131 bits (326), Expect = 1e-29
 Identities = 82/243 (33%), Positives = 117/243 (47%), Gaps = 31/243 (12%)

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           +PLGADH GRDL + ++ G   S   +   +  GV  G  LG VAG  G  VD ++MR+ 
Sbjct: 56  HPLGADHVGRDLYARVVHGTARSLGTAFAAVALGVLAGGALGAVAGVAGRAVDAVVMRVV 115

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D+ L+ P L+L++A  + L      F ++     ++  A+        G +G        
Sbjct: 116 DVLLAVPGLLLSLAVVSAL-----GFGTA-----QVACAV------GVGTVG-------- 151

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
                  G AR++R      R   YVEAAR  G+    IL RHI+PN   P+L     + 
Sbjct: 152 -------GIARVSRAQVRRVRGGEYVEAARLAGVAGPLILLRHIVPNAAPPVLALAVTEC 204

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
           G  VL  A L FLG GA PP  +WG ++  G  Y    WWL   PGLV++   +  + +G
Sbjct: 205 GTAVLGVASLGFLGFGAPPPAPEWGALISTGRDYLVSAWWLTTLPGLVLVALVVALHRVG 264

Query: 356 DGL 358
             L
Sbjct: 265 RAL 267


>pir||G75068 abc transporter PAB1345 - Pyrococcus abyssi (strain Orsay)
           >gi|5458957|emb|CAB50444.1| (AJ248287) ABC TRANSPORTER
           [Pyrococcus abyssi]
           Length = 309
           
 Score =  131 bits (326), Expect = 1e-29
 Identities = 88/319 (27%), Positives = 146/319 (45%), Gaps = 41/319 (12%)

Query: 59  GLFIVIIFILVGIFGPFLAPWK-----YNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNAT 113
           G+ ++  F+L  I GP   P+      Y     +    Y +  L P   + +   Y   T
Sbjct: 20  GIGLISFFVLFAIIGPLFTPFASDGLYYEKVGKIELPAYSSKTLPPMTRENITIMYTGKT 79

Query: 114 I--YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
           I   + LG D  G+DL + L+ G RTS  I+++  + G  LGI +GLV+GY GG VDEL+
Sbjct: 80  IEVLHILGTDKEGKDLYAELVYGLRTSLWIAVLAAIIGTTLGITIGLVSGYKGGIVDELL 139

Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
           M   ++ L  P+++L I  +A L  R        P ++ +++ +                
Sbjct: 140 MMFVNIMLVIPSIVLLILVAAFLEAR-------SPEVQALIIGLTN-------------- 178

Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
                    WP  AR  R  TL+ + + +V  ++ +GL    I+F  I+PN+I  I +  
Sbjct: 179 ---------WPWVARSVRAQTLSLKNREFVNLSKIVGLSDLRIIFEEIMPNMISYIFMAG 229

Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIA---DWGRIVYDGAQYFPRCWWLVFYPGLVVLLTA 348
            L   G +L  A L F+GLG T  ++      + +   A  F   WW +  PGL++ L  
Sbjct: 230 ILQVSGAILASATLDFIGLGPTTVVSLGVILQKAIMHNALQFGWWWWFI-PPGLIITLII 288

Query: 349 LGWNLLGDGLRDILDPKTR 367
                +  G+ ++ +P+ R
Sbjct: 289 TALFFVNLGMEEVFNPRLR 307


>pir||H72536 probable oligopeptide transport system permease protein APE1581 -
           Aeropyrum pernix (strain K1) >gi|5105268|dbj|BAA80581.1|
           (AP000062) 527aa long hypothetical oligopeptide
           transport system permease protein [Aeropyrum pernix]
           Length = 527
           
 Score =  129 bits (322), Expect = 4e-29
 Identities = 81/257 (31%), Positives = 123/257 (47%), Gaps = 35/257 (13%)

Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
           Y  LG D  GRDL   LL G R + ++ ++     V  G + G+V+GY GG  DE+++R 
Sbjct: 303 YGLLGTDDQGRDLFQGLLYGTRWALIVGLLTSAITVVFGSLYGIVSGYLGGIADEVMLRF 362

Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
             +  S PAL L I F+A++                             GN+  ++ +IV
Sbjct: 363 AQIIYSLPALPLLILFAAII----------------------------GGNIWVIIFLIV 394

Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
           A     WPG A +TR      + + YVEAA A G  T  I+  ++ P ++  +   + L 
Sbjct: 395 AFS---WPGIAFVTRSMAFQIKSEPYVEAAIASGAGTVRIVLLYLAPQVLPYMFASMALS 451

Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVY---DGAQYFPRCWWLVFYPGLVVLLTALGW 351
             G V+ EA LSFL LG  P +  WG+I++   D        WW V  PGL + +  + +
Sbjct: 452 VPGAVIAEASLSFLNLG-DPDLVTWGKILFEAQDAGAALNGYWWWVIPPGLAIAVVGMTF 510

Query: 352 NLLGDGLRDILDPKTRR 368
             +G+ L  IL+PK +R
Sbjct: 511 VFIGNALDAILNPKLKR 527


>pir||D82170 peptide ABC transporter, permease protein VC1682 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9656198|gb|AAF94832.1| (AE004246) peptide ABC
           transporter, permease protein [Vibrio cholerae]
           Length = 295
           
 Score =  128 bits (318), Expect = 1e-28
 Identities = 94/308 (30%), Positives = 143/308 (45%), Gaps = 45/308 (14%)

Query: 56  ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
           A+ GL+ ++   LV I  P++AP+     P +++S    V L PP       +    T+ 
Sbjct: 29  AMFGLWSLLFIALVTILSPWIAPYD----PQMHSS----VLLLPPS------WEPEGTVD 74

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           Y LG D  GRD+LS L+ G+  S   ++++ +    +G  +G +AG   G +   +  + 
Sbjct: 75  YFLGTDDLGRDILSRLIDGSLFSIGAAVLITLIATLVGGTIGALAGMTKGLLSSTLNHIL 134

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D  +S P+L+LAI F A L                            AG    LLA+ +A
Sbjct: 135 DTVMSIPSLLLAIIFVAFLG---------------------------AGEFNILLAIGLA 167

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
           +I    P + R    +   E EK YV AAR  G     +L+  I PNI+  I+  IT+  
Sbjct: 168 LI----PRFIRSVYVAVHNEVEKDYVMAARLDGANEFYLLWHSIFPNILPIIVAEITMAL 223

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
              +L    L FLGLGA  P  +WG ++ D  +      W V  PGL ++ T +  NL+G
Sbjct: 224 SIAILDITALGFLGLGAQSPSTEWGAMLGDSVELIYIAPWTVTLPGLAIMFTVVVINLVG 283

Query: 356 DGLRDILD 363
           DG R  L+
Sbjct: 284 DGARQALN 291


>gb|AAK42788.1| ABC transporter, permease protein [Sulfolobus solfataricus]
           Length = 290
           
 Score =  125 bits (312), Expect = 7e-28
 Identities = 86/315 (27%), Positives = 147/315 (46%), Gaps = 50/315 (15%)

Query: 58  IGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYP 117
           +GL I + +IL+ IFG  + P  Y+  P+  T     +++ P  S            Y  
Sbjct: 21  VGLIITVFYILIAIFGQIIFPKTYSLPPSPTT-----IFMPPQLSN----------FYLI 65

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
            G   +   +L  ++QGA++   IS +  +F   +GI++G++AGY GG +D ++M +TD+
Sbjct: 66  FGTGPFAESILVQIIQGAKSVIEISFLAGLFATLIGIVVGIIAGYLGGIIDNILMGITDI 125

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
            L+ P+LIL I         + AF +S+P+   ++L+I +                    
Sbjct: 126 ILTLPSLILIIII-------VSAFKTSNPIFLSLILSITS-------------------- 158

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
              W G AR  R   L  R    VE  R +GL  + I+FR ++P +   I ++   +   
Sbjct: 159 ---WAGLARAVRSQVLVIRNSPAVEVLRVLGLSRKYIIFREVVPTLGSYIAIHYIFNVEA 215

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYD----GAQYFPRCWWLVFYPGLVVLLTALGWNL 353
            V  E GL +LG+    P  +WG ++      GA    +  + + +P +VV     G  L
Sbjct: 216 AVYAEVGLYYLGVLPYNP-NNWGAMIQQALSYGAAAGGKAIYYLAFPTIVVAGFMSGLIL 274

Query: 354 LGDGLRDILDPKTRR 368
           L  G+ +I +P+ RR
Sbjct: 275 LSYGIDEISNPRIRR 289


>pir||D71545 probable oligopeptide permease - Chlamydia trachomatis  (serotype
           D, strain UW3/Cx) >gi|3328606|gb|AAC67792.1| (AE001293)
           Oligopeptide Permease [Chlamydia trachomatis]
           Length = 281
           
 Score =  124 bits (309), Expect = 1e-27
 Identities = 91/303 (30%), Positives = 143/303 (47%), Gaps = 51/303 (16%)

Query: 57  LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
           ++G   + + +L   F P+L P     FP       ++   +P  SKA           +
Sbjct: 20  VLGCLTLAVLVLAATFLPYLYPDYERTFP-------EHALQSP--SKA-----------F 59

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
           P G D+ GR +L+  LQG R S +I++   +  V LG++   +A   G KV +++ R+T+
Sbjct: 60  PFGTDNLGRCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTLALASGKKVADIMSRITE 119

Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
           +  S P + + I                      ++L IF        N G +L +I+AM
Sbjct: 120 ILFSIPRIPVII----------------------LLLVIF--------NHG-ILPLILAM 148

Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
            I  W   ARI  G  L    K +V +ARA+   T  IL +H+LPN +GPI+  +     
Sbjct: 149 TITGWIPIARIIYGQFLLLENKEFVLSARALQASTFHILRKHLLPNSLGPIISTLIFTIP 208

Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGD 356
             V  EA +SFLGLG  PP A  G +V +G        WL F P   +++ ++ +N +G+
Sbjct: 209 NAVYTEAFISFLGLGIQPPYASLGTLVKEGIHSLAYHPWLFFIPSFFMIIVSVSFNCIGE 268

Query: 357 GLR 359
           GLR
Sbjct: 269 GLR 271


>dbj|BAA98410.1| (AP002545) oligopeptide permease [Chlamydophila pneumoniae J138]
           Length = 284
           
 Score =  124 bits (308), Expect = 2e-27
 Identities = 92/305 (30%), Positives = 144/305 (47%), Gaps = 51/305 (16%)

Query: 57  LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
           ++GL  +II +L    G  L PW Y  +    TS  D   L  P S+            +
Sbjct: 23  VLGLTTLIILML----GALLLPWFYQDYEQ--TSLKD--ILVSPCSR------------F 62

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
           P G D  GR + +  L+G R S +I+ I  +  V +G++   VA   G K+D L+MR T+
Sbjct: 63  PFGTDTLGRCMFARTLRGLRLSLLIATIATLIDVCVGLLWATVAISGGKKIDFLMMRTTE 122

Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
           +  S P + + I                      ++L IF            LLA+I+AM
Sbjct: 123 ILFSLPRIPIII----------------------LLLVIFHHG---------LLALILAM 151

Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
            I  W   +RI  G  L  + K +V +A+A+   T  IL +H+LPN + PI+  +     
Sbjct: 152 TITGWIPISRIIYGQFLLLKNKPFVLSAKAMHASTFHILKKHLLPNTLAPIISTLIFTIP 211

Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGD 356
             +  EA +SFLGLG  PP A  G +V +G        WL F+P L+++  ++ +NL+G+
Sbjct: 212 NAIYTEAFISFLGLGIQPPQASLGTLVKEGINAIDYYPWLFFFPSLIMIALSISFNLIGE 271

Query: 357 GLRDI 361
           G + +
Sbjct: 272 GAKTL 276


>pir||F72107 peptide ABC transporter, permease protein CP0567 [imported] -
           Chlamydophila pneumoniae (strains CWL029 and AR39)
           >gi|4376471|gb|AAD18353.1| (AE001606) Oligopeptide
           Permease [Chlamydophila pneumoniae CWL029]
           >gi|7189479|gb|AAF38386.1| (AE002215) peptide ABC
           transporter, permease protein [Chlamydophila pneumoniae
           AR39]
           Length = 284
           
 Score =  122 bits (303), Expect = 7e-27
 Identities = 91/305 (29%), Positives = 143/305 (46%), Gaps = 51/305 (16%)

Query: 57  LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
           ++GL  +II +L    G  L PW Y  +    TS  D   L  P S+            +
Sbjct: 23  VLGLTTLIILML----GALLLPWFYQDYEQ--TSLKD--ILVSPCSR------------F 62

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
           P G D  GR + +  L+G R S +I+ I  +  V +G++   VA   G K+D L+MR T+
Sbjct: 63  PFGTDTLGRCMFARTLRGLRLSLLIATIATLIDVCVGLLWATVAISGGKKIDFLMMRTTE 122

Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
           +  S P + + I                      ++L IF            LL +I+AM
Sbjct: 123 ILFSLPRIPIII----------------------LLLVIFHHG---------LLPLILAM 151

Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
            I  W   +RI  G  L  + K +V +A+A+   T  IL +H+LPN + PI+  +     
Sbjct: 152 TITGWIPISRIIYGQFLLLKNKPFVLSAKAMHASTFHILKKHLLPNTLAPIISTLIFTIP 211

Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGD 356
             +  EA +SFLGLG  PP A  G +V +G        WL F+P L+++  ++ +NL+G+
Sbjct: 212 NAIYTEAFISFLGLGIQPPQASLGTLVKEGINAIDYYPWLFFFPSLIMIALSISFNLIGE 271

Query: 357 GLRDI 361
           G + +
Sbjct: 272 GAKTL 276


>pir||G81699 peptide ABC transporter, permease protein TC0473 [imported] -
           Chlamydia muridarum (strain Nigg)
           >gi|7190514|gb|AAF39321.1| (AE002315) peptide ABC
           transporter, permease protein [Chlamydia muridarum]
           Length = 287
           
 Score =  122 bits (302), Expect = 1e-26
 Identities = 91/303 (30%), Positives = 138/303 (45%), Gaps = 51/303 (16%)

Query: 57  LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
           L+G  ++ + IL  IF P L P     FP        N  L  P               +
Sbjct: 26  LLGCTVLTVLILSAIFLPSLYPDYEKTFP--------NYALQAPNK------------LF 65

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
           P G D+ GR +L+  LQG R S +I++   +  V LG++   +A   G K+ + + R+T+
Sbjct: 66  PFGTDNLGRCMLARTLQGIRLSLLIAVSATIIDVCLGLLWSTLALAGGKKIADFMSRITE 125

Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
           +  S P + + I                      ++L IF        N G +L +I+AM
Sbjct: 126 ILFSLPRIPVII----------------------LLLVIF--------NHG-ILPLILAM 154

Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
            I  W   ARI     L    K +V +ARA+   T  IL +H+LPN +GPI+  +     
Sbjct: 155 TITGWIPIARIIYDQFLLLENKEFVLSARALQASTFHILRKHLLPNTLGPIISTLIFTIP 214

Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGD 356
             V  EA +SFLGLG  PP A  G +V +G        WL F P   +++ ++ +N +G+
Sbjct: 215 NAVYTEAFISFLGLGIQPPYASLGTLVKEGIHSLDYHPWLFFIPSFFMVIISVSFNCIGE 274

Query: 357 GLR 359
           GLR
Sbjct: 275 GLR 277


>pir||C72282 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981774|gb|AAD36296.1|AE001778_17 (AE001778)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 282
           
 Score =  121 bits (301), Expect = 1e-26
 Identities = 84/314 (26%), Positives = 142/314 (44%), Gaps = 56/314 (17%)

Query: 60  LFIVIIF---ILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
           +F + ++   I++ + GP+L+P+K            D +    PG       Y   +  +
Sbjct: 17  IFAICVYAGLIILALVGPYLSPYK------------DPLAFVGPG-------YQPPSKEH 57

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
            LG + +G+D+ + L+ G R+S  + ++       +G+++G VAGY GG  DEL+M  T+
Sbjct: 58  WLGTNTFGQDIFTQLVYGLRSSLFVGVLGGTLATVIGLLIGFVAGYKGGWFDELLMMFTN 117

Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
           + +  P L L I  +A LP R          IE I++ + A                   
Sbjct: 118 ILMVIPTLALLIIIAAYLPYR-------GVFIESIIIGLTA------------------- 151

Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
               WP  AR  R  TL+ + + +V+ AR        I+F  I+PN++  + +   L FG
Sbjct: 152 ----WPWTARAVRAQTLSLKTREFVDLARITARKPMKIIFGEIMPNMMSYVFMVFILQFG 207

Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFP---RCWWLVFYPGLVVLLTALGWNL 353
           G +L   GL F+GLG T  I+  G ++     +       WW    PG V+ L      +
Sbjct: 208 GAILAATGLDFIGLGPTRGIS-LGIMMQQATLWNAIQLGMWWWAITPGAVITLMVATLYV 266

Query: 354 LGDGLRDILDPKTR 367
           +  GL ++ +PK R
Sbjct: 267 MNAGLDEVFNPKLR 280


>pir||C71163 probable oligopeptide transport system permease protein AppC -
           Pyrococcus horikoshii >gi|3256909|dbj|BAA29592.1|
           (AP000002) 304aa long hypothetical oligopeptide
           transport system permease protein AppC [Pyrococcus
           horikoshii]
           Length = 304
           
 Score =  120 bits (299), Expect = 2e-26
 Identities = 86/321 (26%), Positives = 144/321 (44%), Gaps = 46/321 (14%)

Query: 59  GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLA-------PPGSKAVLEYYNN 111
           G  ++I FI+ G+ GP   P+  +    LY      + +A       PP ++  +  Y  
Sbjct: 16  GFGMLIAFIIFGLIGPLFTPFASD---GLYYEQVGKIKIASYSAKTLPPMTRENITTYTG 72

Query: 112 --ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDE 169
               + + LG D  G+DL + L+ G RTS  ++ +  + G   GI +G V+GY GG VDE
Sbjct: 73  KKVEVLHILGTDKEGKDLYTELVYGLRTSLWVAFLAAIIGTITGITIGFVSGYKGGLVDE 132

Query: 170 LIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRL 229
           L+M   ++ L  P+++L I  +A L  R        P I+ +++ +              
Sbjct: 133 LLMMFVNIMLVIPSIVLLILVAAYLEAR-------SPEIQALIIGLTN------------ 173

Query: 230 LAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILV 289
                      WP  AR  R  TL+ + + +V  ++ +G+    I+   ILPN+I  I +
Sbjct: 174 -----------WPWVARSVRAQTLSLKNREFVHMSKIMGVGDLRIIVEDILPNMISYIFM 222

Query: 290 YITLDFGGVVLMEAGLSFLGLGATPPIA---DWGRIVYDGAQYFPRCWWLVFYPGLVVLL 346
              L   G +L  A L F+GLG T  ++      + +   A  F   WW +  PGL + L
Sbjct: 223 TGILQVSGAILASATLDFIGLGPTTMVSLGVILQKAIMHNALQFGWWWWFI-PPGLFITL 281

Query: 347 TALGWNLLGDGLRDILDPKTR 367
                  +  GL ++ +P+ R
Sbjct: 282 IITSLFFINLGLEEVFNPRLR 302


>emb|CAA10911.1| (AJ222649) sapC [Erwinia chrysanthemi]
           Length = 296
           
 Score =  120 bits (299), Expect = 2e-26
 Identities = 94/324 (29%), Positives = 148/324 (45%), Gaps = 44/324 (13%)

Query: 43  WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
           WR       +   A+IG +  ++ + + +FG  LAP+  +         +    L PP  
Sbjct: 16  WRDAWNVFRQDRMAMIGFYGFLLLLGLCLFGNTLAPYALD-------QQFLGYQLLPPSW 68

Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
                 Y     +  LG D  GRDLLS LL GA  +F  +++V +    +GI++G++AG 
Sbjct: 69  SR----YGKCRFF--LGTDDLGRDLLSRLLSGAAPTFGPALLVTLAATLVGILIGMLAGV 122

Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
             G    ++  + D  LS P+L+LA+                      +V+A     +  
Sbjct: 123 THGLRSAVLNHILDPLLSIPSLLLAM----------------------VVIAFIGPQLTH 160

Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
           A     +LAV +A++    P   R    +   E EK YV AAR  G  TR +L+  ++PN
Sbjct: 161 A-----MLAVWMALL----PRMVRTIYSAVHDELEKEYVTAARLDGASTRYLLWYAVVPN 211

Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
           I+  ++  +T  F   +L  A L FL LGA  P  +WG ++ +  +      W V  PG 
Sbjct: 212 ILPVLVSEVTRAFSIAILDIAALGFLNLGAQLPTTEWGVLLGNSLELVYAAPWTVMLPGT 271

Query: 343 VVLLTALGWNLLGDGLRDILDPKT 366
            + L+ L  NLLGDG+R  L  +T
Sbjct: 272 AITLSVLIVNLLGDGIRRALLAQT 295


>pir||C72059 peptide ABC transporter, permease protein, probable CP0151
           [imported] - Chlamydophila pneumoniae (strains CWL029
           and AR39) >gi|4376892|gb|AAD18736.1| (AE001644)
           Oligopeptide Permease [Chlamydophila pneumoniae CWL029]
           >gi|7189087|gb|AAF38033.1| (AE002176) peptide ABC
           transporter, permease protein, putative [Chlamydophila
           pneumoniae AR39] >gi|8978969|dbj|BAA98804.1| (AP002547)
           oligopeptide permease [Chlamydophila pneumoniae J138]
           Length = 579
           
 Score =  118 bits (293), Expect = 1e-25
 Identities = 70/245 (28%), Positives = 126/245 (50%), Gaps = 31/245 (12%)

Query: 125 RDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPAL 184
           +DLL+ L+ G R + V++ I I   + +GI++GLV+GY+GG VD ++ R T+++ + P L
Sbjct: 366 KDLLAALVFGIRIALVVAGIGITIALAIGIMIGLVSGYFGGTVDMILSRFTEIWETMPVL 425

Query: 185 ILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGY 244
            + +   ++   +         ++  ++L  F+                       W G+
Sbjct: 426 FILMLVISITQQKSL-------LLNTVLLGCFS-----------------------WTGF 455

Query: 245 ARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAG 304
           +R  R   L +R++ YV AA  +G     I+   ILPN I P++  +      ++  EAG
Sbjct: 456 SRYVRIEVLKQRDRGYVLAATNLGYSHYYIMVHQILPNAIVPVISLVPFAMMAMISCEAG 515

Query: 305 LSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDP 364
           L+FLGLG     A WG ++ +G   FP    +++ P +++ +  +   L+GDG+RD LDP
Sbjct: 516 LTFLGLGEESS-ASWGNLMREGVTGFPAESAVLWPPAIILTMLLIAIALIGDGVRDALDP 574

Query: 365 KTRRS 369
           + + S
Sbjct: 575 RLQDS 579


>sp|Q07743|OPPC_LACLA OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN OPPC
           >gi|1075748|pir||D53290 oligopeptide transport protein
           oppC - Lactococcus lactis subsp. lactis
           >gi|149389|gb|AAA25166.1| (M76471) 'Sequence is part of
           a 1.65-kb fragment of the lactose plasmid from
           Lactococcus lactis subsp cremoris SK11 that facilitates
           integration when plasmid is in L.lactis subsp. lactis.';
           ORF >gi|308853|gb|AAA16166.1| (L18760) transmembrane
           protein [Lactococcus lactis] >gi|495180|gb|AAB00536.1|
           (U09553) transmembrane protein [Lactococcus lactis]
           Length = 294
           
 Score =  117 bits (291), Expect = 2e-25
 Identities = 90/335 (26%), Positives = 155/335 (45%), Gaps = 51/335 (15%)

Query: 34  EKNRSRLEEWRLMLYALNRSPPALIG-LFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHY 92
           +K+++ L     +   L +   A+I  +F+V +F++V I+  FL    Y         + 
Sbjct: 4   KKHKNSLSLVHSIKEELKKDKLAMISTIFLVAVFLIVYIYSMFLKQSNY------VDVNI 57

Query: 93  DNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPL 152
            + YLAP             T  + LG D+ GRD++ +L+  AR SF I+  V +  + +
Sbjct: 58  MDQYLAP------------LTNGHLLGTDNGGRDIIMMLMISARNSFNIAFAVTLITLVV 105

Query: 153 GIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIV 212
           G ILG++ GY+GG+ D + MR TD  +  P++++ I F  ++P       +S  +I   +
Sbjct: 106 GNILGVITGYFGGRFDLIFMRFTDFVMILPSMMIIIVFVTIIPR-----FNSWSLIG--I 158

Query: 213 LAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTR 272
           ++IF+                       W G  R+ R  T+TE  + YV A++  G    
Sbjct: 159 ISIFS-----------------------WIGTTRLIRARTMTEVNRDYVRASKTSGTSDF 195

Query: 273 TILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGA--QYF 330
            I+FR I PN+   ++   TL F G + +E GLSFLG G        G ++ +    +  
Sbjct: 196 KIMFREIWPNLSTLVIAEATLVFAGNIGLETGLSFLGFGLPAGTPSLGTMINEATNPETM 255

Query: 331 PRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPK 365
               W      +V+L+  L    +G+ LR + D +
Sbjct: 256 TDKPWTWVPATVVILIVVLAIIFIGNALRRVADQR 290


>emb|CAA64610.1| (X95287) archaeal ABC-transporter system [Methanosarcina mazei]
           Length = 322
           
 Score =  116 bits (289), Expect = 3e-25
 Identities = 85/305 (27%), Positives = 133/305 (42%), Gaps = 60/305 (19%)

Query: 59  GLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNV--YLAPPGSKAVLEYYNNATIYY 116
           G+F+  +F+ + +F   LAP+          + YD    Y  P G              +
Sbjct: 58  GIFLFALFLFMALFPSLLAPY----------APYDRFTPYEEPSGQ-------------H 94

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
            LG +  G D+LS L+ GA+ S  +     +    +G ILGL +GY+ G VDEL+M  TD
Sbjct: 95  LLGTNDIGNDILSELVYGAKVSLTVGFAAALVSTLIGTILGLCSGYFRGAVDELLMGFTD 154

Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
           + L  P + L I   A L   +   +   PV+                            
Sbjct: 155 IVLIIPKIPLIIVLGAYLQPSIWILV---PVLG--------------------------- 184

Query: 237 IIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFG 296
            ++ W   AR+TR  TL  RE  YV++AR +G  ++ I+F  ILPN+   +L    L   
Sbjct: 185 -LLSWESTARVTRSKTLQLRETGYVKSARCMGFSSQHIMFSDILPNLYHVLLPKFMLATA 243

Query: 297 GVVLMEAGLSFLGLGATPPIADWGRIV---YDGAQYFPRCWWLVFYPGLVVLLTALGWNL 353
             ++ EA LSFLGL +   +  WG ++   +    +    WW    PG+ + L  +   L
Sbjct: 244 SAMISEASLSFLGL-SDVSMKSWGTMLSFAFSRGGFIRDMWWWYLPPGICITLCVISIAL 302

Query: 354 LGDGL 358
           +G G+
Sbjct: 303 IGFGI 307


>sp|P36669|SAPC_SALTY PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
           >gi|628819|pir||S39587 peptide transport system permease
           sapC - Salmonella typhimurium >gi|414210|emb|CAA52286.1|
           (X74212) sapC [Salmonella typhimurium]
           Length = 296
           
 Score =  115 bits (285), Expect = 1e-24
 Identities = 95/305 (31%), Positives = 136/305 (44%), Gaps = 44/305 (14%)

Query: 55  PALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATI 114
           PA++GL+      L+ IFG ++AP+  +         +    L PP       +     +
Sbjct: 28  PAMVGLYGCAGLALLCIFGGWIAPYGID-------QQFLGYQLLPPS------WSRYGEV 74

Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
            + LG D  GRD+LS LL GA  +   + IV +     G++LG+VAG   G    ++  +
Sbjct: 75  SFFLGTDDLGRDVLSRLLSGAAPTVGGAFIVTLAATLCGLVLGVVAGATHGLRSAVLNHI 134

Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
            D  LS P+L+LAI                      IV+A     +  A     + AV +
Sbjct: 135 LDTLLSIPSLLLAI----------------------IVVAFAGPHLSHA-----MFAVWL 167

Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
           A++    P   R        E EK YV AAR  G  T  IL+  ILPNI   ++  IT  
Sbjct: 168 ALL----PRMVRSVYSMVHDELEKEYVIAARLDGATTLNILWFAILPNITAGLVTEITRA 223

Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLL 354
               +L  A L FL LGA  P  +WG ++ D  +      W V  PG  + L+ L  NLL
Sbjct: 224 LSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAITLSVLLVNLL 283

Query: 355 GDGLR 359
           GDG+R
Sbjct: 284 GDGIR 288


>pir||C71510 probable oligopeptide permease - Chlamydia trachomatis  (serotype
           D, strain UW3/Cx) >gi|3328913|gb|AAC68078.1| (AE001321)
           Oligopeptide Permease [Chlamydia trachomatis]
           Length = 578
           
 Score =  115 bits (284), Expect = 1e-24
 Identities = 70/241 (29%), Positives = 122/241 (50%), Gaps = 31/241 (12%)

Query: 125 RDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPAL 184
           +DLL+ L+ G R + V+  + +   + +GII+GL++GY+GGKVD L+ R+T+++ + P L
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVSIALFIGIIVGLLSGYFGGKVDMLLSRVTEIWETMPML 425

Query: 185 ILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGY 244
            + +   A+   +         +++ ++L  F                        W   
Sbjct: 426 FILMLVVAITQKK-------SLILDSVLLGCFG-----------------------WVSI 455

Query: 245 ARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAG 304
           +R  R  TL +R   YV AA  +      I+   ILPN+I P++  +      ++  EAG
Sbjct: 456 SRYVRIETLKQRNLGYVLAATNLCYSHYHIMVHQILPNVIVPVISLLPFSMMAMISCEAG 515

Query: 305 LSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDP 364
           L+FLGLG     A WG ++ +G   FP    +++ P +++ L  +   ++GDG+RD LDP
Sbjct: 516 LTFLGLGEESS-ASWGNLLREGVTAFPSESAILWPPAIMLTLLLMAIAVIGDGIRDALDP 574

Query: 365 K 365
           K
Sbjct: 575 K 575


>pir||F81668 peptide ABC transporter, permease protein, probable TC0763
           [imported] - Chlamydia muridarum (strain Nigg)
           >gi|7190788|gb|AAF39566.1| (AE002344) peptide ABC
           transporter, permease protein, putative [Chlamydia
           muridarum]
           Length = 578
           
 Score =  112 bits (278), Expect = 6e-24
 Identities = 68/241 (28%), Positives = 121/241 (49%), Gaps = 31/241 (12%)

Query: 125 RDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPAL 184
           +DLL+ L+ G R + V+  + +   + +G I+GL++GY+GGK+D L+ R+T+++ + P L
Sbjct: 366 KDLLASLIFGIRIAIVVGGLGVTIALFIGTIVGLLSGYFGGKIDMLLSRVTEIWETMPML 425

Query: 185 ILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGY 244
            + +   A+   +         +++ ++L  F                        W   
Sbjct: 426 FILMLVVAITQKK-------SLILDSVLLGCFG-----------------------WVSI 455

Query: 245 ARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAG 304
           +R  R  TL +R   YV AA  +      I+   ILPN+I P++  +      ++  EAG
Sbjct: 456 SRYVRIETLKQRNLGYVLAATNLCYSHYHIMVHQILPNVIVPVISLLPFSMMAMISCEAG 515

Query: 305 LSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDP 364
           L+FLGLG     A WG ++ +G   FP    +++ P +++ L  +   ++GDG+RD LDP
Sbjct: 516 LTFLGLGEESS-ASWGNLLREGVSAFPSESAILWPPAVMLTLLLMSIAVIGDGIRDALDP 574

Query: 365 K 365
           K
Sbjct: 575 K 575


>pir||G72428 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4980513|gb|AAD35123.1|AE001690_17 (AE001690)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 280
           
 Score =  111 bits (276), Expect = 1e-23
 Identities = 81/330 (24%), Positives = 145/330 (43%), Gaps = 58/330 (17%)

Query: 43  WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
           +R M+  L ++   +IG  I + F+ +GIFGP      Y   PT  T  Y+     PP S
Sbjct: 2   FRTMIRPLFKNKKFIIGFSIFLFFLFLGIFGPMF----YRVDPTEMTWDYEQ----PPSS 53

Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
                        +PLG D YGRD+L+ LL G R+S  I  +  +  + +G I+G  +  
Sbjct: 54  A------------HPLGTDTYGRDVLAQLLHGIRSSLYIGFLAAIISLVIGTIIGSFSAV 101

Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
             G VD+++M +T++ L+ P++++AI  ++ L  R    ++       ++L +F      
Sbjct: 102 KRGIVDDVLMGITNIVLTTPSILIAILIASYLKVRSVEMVA-------VILGLFQ----- 149

Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
                             WP +AR  R   ++   + YV  +   G     ++   ++P 
Sbjct: 150 ------------------WPWFARAIRAQLMSVMSREYVYLSVMAGYSDLRLVIEDLIPT 191

Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIA-----DWGRIVYDGAQYFPRCWWLV 337
           I     +   L   G ++ EAGLS +GLG T  I+      W  ++ +  +     WW  
Sbjct: 192 IATYAFMSFVLFINGGIMGEAGLSLIGLGPTQGISLGIMLQWA-VLMEAVR--RGLWWWF 248

Query: 338 FYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
             PGL ++       ++   + ++ +P+ R
Sbjct: 249 VPPGLAIVAVTASLLVISTAMDEVFNPRLR 278


>emb|CAA68075.1| (X99740) oligopeptide transport system permease protein homolog
           [Mycoplasma hominis]
           Length = 424
           
 Score =  111 bits (274), Expect = 2e-23
 Identities = 75/291 (25%), Positives = 137/291 (46%), Gaps = 36/291 (12%)

Query: 80  KYNFFPTLYTSHYDNVYLAPPGSKA-VLEYYNNATIYYP---LGADHYGRDLLSLLLQGA 135
           KYN +  +  ++ + +      + A  L+ +N    +Y    LG    G D+ +      
Sbjct: 157 KYNAYDLVVANYINGIISKNQITDAEYLKIFNEQKNFYSHVLLGTSSIGYDIWTTAWYAT 216

Query: 136 RTSFVISIIVIMFGVPLGIILGLVAGYYGGK-VDELIMRLTDMFLSFPALILAIAFSAVL 194
             +  I++IV++    +GI +G   G+Y GK +D +IMR+ ++FL+ P LI  + F +++
Sbjct: 217 WRAIKIALIVVILEAIIGISIGAFLGFYAGKLIDTIIMRVIEIFLAPPTLIWILLFVSII 276

Query: 195 PDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLT 254
                                               ++++ + IV WPG+  ITR   +T
Sbjct: 277 G-------------------------------ANEWSLVLTLTIVGWPGFVGITRMFIIT 305

Query: 255 EREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATP 314
            +++ ++ AA+AIG+ T   +F H LP IIG I   I     GV+L  A L+FLG     
Sbjct: 306 VKDEEFIIAAKAIGVGTPRRIFVHALPTIIGKIANNIVRSVPGVILWIASLAFLGFFKEK 365

Query: 315 PIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPK 365
              + G+++ + +Q      W++  P +++L  +L  N +  G+ D LDP+
Sbjct: 366 KDTNLGQMLIEASQEVGSNIWIIALPTIILLFLSLSLNFIALGVHDALDPR 416


>gb|AAK41512.1| Oligo/dipeptide transport, permease protein (dppC-1) [Sulfolobus
           solfataricus]
           Length = 450
           
 Score =  109 bits (271), Expect = 4e-23
 Identities = 71/245 (28%), Positives = 119/245 (47%), Gaps = 37/245 (15%)

Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
           Y  +G D++GR L   +L G   +  I ++  +  V +G+ +G ++GY GG  D +I  +
Sbjct: 228 YGLMGTDYFGRPLDLGILLGLPNALEIGVLTSLVAVLVGVFVGGISGYLGGNKDSIIQWV 287

Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
           T +FL+ PAL   +A S V    +        VIE +++A  +                 
Sbjct: 288 TLVFLALPALPFLVAVSFVAEPNI--------VIEALLIAFLS----------------- 322

Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
                 WP YA I R   L+ +   YVEA + +G+P+  + F H +P +I   + Y+ L 
Sbjct: 323 ------WPFYAIIARSMALSIKSNSYVEADKLLGIPSYRVFFTHFMPRLIPITVAYMVLG 376

Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPR----CWWLVFYPGLVVLLTALG 350
               +L+   L+FLG+ A   I  WG I+ D A+ +       WW V +PG +V++ A+ 
Sbjct: 377 VPAGILLAQTLAFLGI-APANIVTWGGIL-DAAETYQAQVNGWWWWVVFPGAMVVIVAIP 434

Query: 351 WNLLG 355
           + L+G
Sbjct: 435 FVLIG 439


>gb|AAC24214.1| (AF055482) ABC transporter [Thermotoga neapolitana]
           Length = 292
           
 Score =  108 bits (266), Expect = 2e-22
 Identities = 80/285 (28%), Positives = 128/285 (44%), Gaps = 45/285 (15%)

Query: 90  SHYD--NVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIM 147
           S YD   +Y  P G    LE+        PLG +  G+D+   L    R S +I+++  +
Sbjct: 37  SPYDPIRIYQVPRGLPPSLEH--------PLGTNWLGQDVFWRLTFAVRNSLMIAVVTAL 88

Query: 148 FGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPV 207
           F   + + +G+++GY GG VD ++M + D  +  P LI+ I  S +L D  ++F      
Sbjct: 89  FSRAIAVFVGILSGYKGGAVDRVLMTVGDTTMVLPFLIVLIVISMILRDWTKSFF----- 143

Query: 208 IEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAI 267
                            NLG LLA         W   AR+ R   L+ RE+ +   A   
Sbjct: 144 -----------------NLGLLLAFFS------WAWDARVIRSQVLSLRERDFTFVAILS 180

Query: 268 GLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWG----RIV 323
           G+ T  I+++ +LP+++  I      +    + ME  L++LGLG  P +   G    R +
Sbjct: 181 GMSTLRIVYKQLLPHVLPIIFTTFINNMAWAIGMEITLAYLGLGIDPTVPTIGTMLQRAI 240

Query: 324 YDGAQYFPRCWWLVF-YPGLVVLLTALGWNLLGDGLRDILDPKTR 367
           Y  A +    WWLV      ++L  AL W  L   + + LDP+ R
Sbjct: 241 YRQALFLGLWWWLVAPIVAAILLFVALYW--LSTSVSEYLDPRAR 283


>pir||B72284 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4981748|gb|AAD36272.1|AE001776_8 (AE001776)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 291
           
 Score =  107 bits (264), Expect = 3e-22
 Identities = 77/285 (27%), Positives = 126/285 (44%), Gaps = 41/285 (14%)

Query: 88  YTSHYD--NVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIV 145
           Y S YD  ++Y  P G     E+        P G +  G+D+   L    R S +I++I 
Sbjct: 35  YVSPYDPVSIYQVPRGLPPSFEH--------PFGTNWLGQDVFWRLTFAVRNSLLIAVIT 86

Query: 146 IMFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSH 205
             F   + II+G+V+GY GG +D+++M + D  +  P LI+ I  S +L D  ++F+   
Sbjct: 87  AFFSRIIAIIVGIVSGYKGGALDQVLMTIGDTTMVLPILIVLIVISMILKDWARSFV--- 143

Query: 206 PVIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAAR 265
                              NLG LLA         W   AR+ R   L+ RE+ +V  A 
Sbjct: 144 -------------------NLGLLLAFFS------WAWDARVIRSQVLSVRERDFVRVAV 178

Query: 266 AIGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYD 325
             G+ T  I+ + +LP+++  I      +    + ME  L++LGLG  P +   G ++  
Sbjct: 179 LSGMSTMKIVGKQLLPHVLPVIFTTFINNMSWAIGMEITLAYLGLGIDPTVPTLGTMLQR 238

Query: 326 G---AQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
                  F   WW +  P +  +L  +    L   + + LDP+ R
Sbjct: 239 AITRQALFLGLWWWLAAPIVTAILLFIALYWLSVSISEYLDPRAR 283


>gb|AAK41520.1| Oligo/dipeptide transport, permease protein (dppC-2) [Sulfolobus
           solfataricus]
           Length = 536
           
 Score =  106 bits (262), Expect = 5e-22
 Identities = 64/251 (25%), Positives = 113/251 (44%), Gaps = 36/251 (14%)

Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRL 174
           Y  LG D+ G  + +   QG      ++I+  +  V +G + GL AGYYGGK+D+++   
Sbjct: 303 YGVLGTDNNGASVFAEYSQGGIFDLELAILAGLAIVFIGAVFGLFAGYYGGKLDQILTSF 362

Query: 175 TDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIV 234
           TD  L  P L + I    +                  +  +F  D+           +I+
Sbjct: 363 TDFILLLPGLAILIVLITIFQQ---------------IFTVFPKDI----------LIII 397

Query: 235 AMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLD 294
            ++I+ WP  +R  RG  L  R   +VEAA+A+G+    I+ +H+L ++   I+  +  D
Sbjct: 398 VLVILSWPPTSRTIRGQVLQVRNMAFVEAAKALGMSNMEIIRKHVLRHVFPIIIAQLIFD 457

Query: 295 FGGVVLMEAGLSFLGLGATPPIADWGRIV-------YDGAQYFPRCWWLVFYPGLVVLLT 347
              V+ +E+ L FLG+G       WG ++        D   +    WW +  PG+ + L 
Sbjct: 458 IPAVIGIESALDFLGIGIL-KFPTWGNMLGFSINASLDAPGF---AWWWILTPGIALFLL 513

Query: 348 ALGWNLLGDGL 358
            +    +G+ +
Sbjct: 514 GVSLFYIGEAI 524


>sp|Q47624|SAPC_ECOLI PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
           >gi|7442408|pir||G64877 peptide transport system
           permease protein sapC - Escherichia coli
           >gi|1279402|emb|CAA65939.1| (X97282) SapC protein
           [Escherichia coli] >gi|1742105|dbj|BAA14845.1| (D90766)
           Peptide transport system permease protein SapC.
           [Escherichia coli] >gi|1742114|dbj|BAA14853.1| (D90767)
           Peptide transport system permease protein SapC.
           [Escherichia coli] >gi|1742123|dbj|BAA14862.1| (D90768)
           Peptide transport system permease protein SapC.
           [Escherichia coli] >gi|1787549|gb|AAC74374.1| (AE000227)
           homolog of Salmonella peptide transport permease protein
           [Escherichia coli K12]
           Length = 296
           
 Score =  105 bits (259), Expect = 1e-21
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 44/304 (14%)

Query: 56  ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
           A++GL+      ++ IFG + AP+  +         +    L PP       +     + 
Sbjct: 29  AMVGLYGCAGLAVLCIFGGWFAPYGID-------QQFLGYQLLPPS------WSRYGEVS 75

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           + LG D  GRD+LS LL GA  +   + +V +     G++LG  AG   G    ++  + 
Sbjct: 76  FFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGATHGLRSAVLNHIL 135

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D  L+ P+L+LAI                      IV+A     +  A     + AV +A
Sbjct: 136 DTLLAIPSLLLAI----------------------IVVAFAGPSLSHA-----MFAVWLA 168

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
           ++    P   R        E EK YV AAR  G  T  IL+  ++PNI   ++  IT   
Sbjct: 169 LL----PRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRAL 224

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
              +L  A L FL LGA  P  +WG ++ D  +      W V  PG  ++++ L  NLLG
Sbjct: 225 SMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMISVLLVNLLG 284

Query: 356 DGLR 359
           DG+R
Sbjct: 285 DGVR 288


>gb|AAF28111.1|AF153317_3 (AF153317) SapC [Shigella dysenteriae]
           Length = 296
           
 Score =  105 bits (259), Expect = 1e-21
 Identities = 87/304 (28%), Positives = 133/304 (43%), Gaps = 44/304 (14%)

Query: 56  ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
           A++GL+      ++ IFG + AP+  +         +    L PP       +     + 
Sbjct: 29  AMVGLYGCAGLAVLCIFGGWFAPYGID-------QQFLGYQLLPPS------WSRYGEVS 75

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           + LG D  GRD+LS LL GA  +   + +V +     G++LG  AG   G    ++  + 
Sbjct: 76  FFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGATHGLRSAVLNHIL 135

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D  L+ P+L+LAI                      IV+A     +  A     + AV +A
Sbjct: 136 DTLLAIPSLLLAI----------------------IVVAFAGPSLSHA-----MFAVWLA 168

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
           ++    P   R        E EK YV AAR  G  T  IL+  ++PNI   ++  IT   
Sbjct: 169 LL----PRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRAL 224

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
              +L  A L FL LGA  P  +WG ++ D  +      W V  PG  ++++ L  NLLG
Sbjct: 225 SMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMISVLLVNLLG 284

Query: 356 DGLR 359
           DG+R
Sbjct: 285 DGVR 288


>gi|10955048 ophC [Agrobacterium tumefaciens] >gi|7442467|pir||S77574
           oligopeptide transport protein homolog ophC -
           Agrobacterium tumefaciens plasmid pTiR10
           >gi|1215733|gb|AAC44510.1| (AF242881) ophC
           [Agrobacterium tumefaciens]
           Length = 270
           
 Score =  104 bits (257), Expect = 2e-21
 Identities = 89/305 (29%), Positives = 133/305 (43%), Gaps = 54/305 (17%)

Query: 54  PPALIGLFIVIIFI--LVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
           PP  + L I+ +F+  +  +F P +AP+  N    +  + +D     PP +  +L     
Sbjct: 6   PPLSVMLAILAVFLCFICVVFAPLIAPYGLN---EIVGTSWD-----PPSASNLL----- 52

Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
                  G D  GRDL S  + GAR + +++ + ++    +G  LGL+AG   G +D  +
Sbjct: 53  -------GTDMIGRDLFSRFVWGARITILVASLAVLIAFLIGSGLGLLAGLRKGWLDMAL 105

Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
            R  D+ +S P LILA+    +LP R  AF         IV  I  ++      L RLLA
Sbjct: 106 SRFVDLVMSMPTLILAMMLLTILP-RSVAF---------IVAIIALVEATRFFRLARLLA 155

Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
             +A +        R  RG T                  T+ I+   ILPN I P+L  +
Sbjct: 156 ADIAAL----DYSGRFLRGET------------------TQWIIRHEILPNAITPLLAEL 193

Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
            L F   VL  + LSFLGLG  PP+ DWG ++ +              PG  + + AL  
Sbjct: 194 ALRFIFSVLFLSTLSFLGLGLQPPMTDWGSLIKENKDGLLFGITAALLPGAAIAVLALAV 253

Query: 352 NLLGD 356
             L D
Sbjct: 254 TTLTD 258


>gb|AAC67219.1| (U78968) transmembrane transport protein DppC [Streptococcus
           pyogenes]
           Length = 274
           
 Score =  103 bits (255), Expect = 3e-21
 Identities = 66/249 (26%), Positives = 112/249 (44%), Gaps = 32/249 (12%)

Query: 119 GADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDMF 178
           G D  GRD+    ++G   S  + ++  + GV    + G++AG     +D++I  L D+F
Sbjct: 54  GTDGLGRDMFVRTIKGLYFSLQVGLLGALMGVFFATVFGVLAGLGNSLIDKIIAWLVDLF 113

Query: 179 LSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMII 238
           +  P LI  I    V+    Q                                VI+A  +
Sbjct: 114 IGMPHLIFMILIFFVVGKGAQG-------------------------------VIIATAV 142

Query: 239 VWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGGV 298
             WP  AR+ R      + K +V+ ++++G     I+  HILP I   I +   L F  V
Sbjct: 143 THWPFLARVIRNEVYDLKNKAFVQLSKSMGKTPYYIVRHHILPLIASQIFIGFILLFPHV 202

Query: 299 VLMEAGLSFLGLGATPPIADWGRIVYDGAQYFP-RCWWLVFYPGLVVLLTALGWNLLGDG 357
           +L EA ++FLG G +      G I+ + A++     WWLV +PGL ++L    ++ +G+ 
Sbjct: 203 ILHEASMTFLGFGLSAEQPSVGIILSEAAKHISLGNWWLVVFPGLYLILVVNAFDTIGES 262

Query: 358 LRDILDPKT 366
           L+ +  P+T
Sbjct: 263 LKKLFYPQT 271


>pir||A83389 probable permease of ABC transporter PA2060 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
           >gi|9948068|gb|AAG05448.1|AE004632_7 (AE004632) probable
           permease of ABC transporter [Pseudomonas aeruginosa]
           Length = 338
           
 Score =  102 bits (252), Expect = 7e-21
 Identities = 73/250 (29%), Positives = 110/250 (43%), Gaps = 34/250 (13%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG D  GRD+L+ ++ G R S + ++ + +    LGI  G V GYYGG +D    R  ++
Sbjct: 122 LGTDDQGRDVLARVIYGLRLSILFALGLTLASSLLGICAGAVQGYYGGWIDLFGQRFIEV 181

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
           +   P L L I  ++++                               +G LLA+   M+
Sbjct: 182 WSGLPMLYLLIILASLVQP----------------------------GVGWLLAI---ML 210

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
           +  W     + R   L  R   YV+AAR +GL    ++FRHILPN +   L ++     G
Sbjct: 211 LFSWTSLVDVVRAEFLRGRHLEYVKAARTLGLGDAGVMFRHILPNAMVATLTFLPFLLCG 270

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCW-WLVFYPGLVVLLTALGWNLLGD 356
            V     L FLG G  P     G +V  G       W  L  +  L  LL+ L +  +G+
Sbjct: 271 AVTTLTALDFLGFGLPPGSPSLGELVGQGRDNLQAPWLGLTVFVVLATLLSLLVF--IGE 328

Query: 357 GLRDILDPKT 366
            +RD  DP+T
Sbjct: 329 AVRDAFDPRT 338


>pir||F82301 peptide ABC transporter, permease protein VC0618 [imported] -
           Vibrio cholerae (group O1 strain N16961)
           >gi|9655051|gb|AAF93784.1| (AE004147) peptide ABC
           transporter, permease protein [Vibrio cholerae]
           Length = 341
           
 Score =  101 bits (248), Expect = 2e-20
 Identities = 99/343 (28%), Positives = 151/343 (43%), Gaps = 58/343 (16%)

Query: 43  WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLA---PWKYNFFPTLYTSHYDNVYLA- 98
           W+L    L  +  A+IG+ I+ +F L+ +  P L    P K    P  Y +       A 
Sbjct: 5   WKL----LRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKAN 60

Query: 99  PPGSKAVLEYYNNATIYYPLGADHY------GRDLLSLLLQGARTSFVISI---IVIMFG 149
           P G  A     +  T+     ADH       GRD+ S +  GAR S  +     I + F 
Sbjct: 61  PDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCF- 119

Query: 150 VPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIE 209
             L  ++G+ AGY+GGK+D+ +    ++ L  P                      +P++ 
Sbjct: 120 --LATVIGVSAGYFGGKIDDFLTAAMNIMLVIP---------------------QYPLL- 155

Query: 210 KIVLAIFALDVREAGNLGRLLAVIVAMII--VWWPGYARITRGSTLTEREKLYVEAARAI 267
             VLA F   + EAG L       +A+II    W   AR+ R  T+  REK +V+AA  +
Sbjct: 156 -FVLAAF---IGEAGPL------TIALIIGCTSWAWGARVVRSQTMALREKEFVKAAEVL 205

Query: 268 GLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYD-- 325
           G  +  I+F  ILPN+I  +           ++MEA +SFLGLG  P    WG ++Y+  
Sbjct: 206 GESSWRIIFIEILPNLISIVGASFIGSVMYAIMMEATISFLGLG-DPNTISWGIMLYNVQ 264

Query: 326 -GAQYFPRCWWLVFYPGLVVLLTALGWNLLGDGLRDILDPKTR 367
             +      WW +  P L + L   G  LL   + +I +P+ R
Sbjct: 265 TSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDEIANPQLR 307


>pir||F71957 ABC transporter, permease - Helicobacter pylori (strain J99)
           >gi|4154752|gb|AAD05812.1| (AE001461) ABC transporter,
           permease [Helicobacter pylori J99]
           Length = 338
           
 Score = 98.7 bits (242), Expect = 1e-19
 Identities = 73/244 (29%), Positives = 113/244 (45%), Gaps = 34/244 (13%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG D   RD+L+ L+ G R S V  I++ +F V +G+ LG   GYYGG VD +  RL+++
Sbjct: 120 LGTDDQARDVLARLVYGYRVSLVFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLSEI 179

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
           + + P L L I  S+       AF S+  +I  +VL                        
Sbjct: 180 WSAIPMLFLLIVISS-------AFNSNFWIILFLVL------------------------ 208

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
           +  W G +++ R   L  R   Y +AARA+G+    I+F H+LPN +   + YI      
Sbjct: 209 LFSWMGLSQVVRTEFLKARNMDYTKAARALGVNDLKIIFYHVLPNALVATITYIPFLMAA 268

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW-LVFYPGLVVLLTALGWNLLGD 356
            +     L FLG G     A  G +V  G          +V +  + +LL+ L +  +G+
Sbjct: 269 SISTLVSLDFLGFGMPIGSASLGELVNQGKDNLTTPHLAVVAFVAISLLLSVLVF--IGE 326

Query: 357 GLRD 360
           G+RD
Sbjct: 327 GVRD 330


>pir||C64551 oligopeptide ABC transporter, permease protein - Helicobacter
           pylori (strain 26695) >gi|2313343|gb|AAD07318.1|
           (AE000544) oligopeptide ABC transporter, permease
           protein (oppC) [Helicobacter pylori 26695]
           Length = 338
           
 Score = 98.3 bits (241), Expect = 1e-19
 Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 34/244 (13%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG D   RD+L+ L+ G R S +  I++ +F V +G+ LG   GYYGG VD +  RL+++
Sbjct: 120 LGTDDQARDVLARLVYGYRVSLIFGILLTLFSVLIGVSLGAFQGYYGGLVDLVGQRLSEI 179

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
           + + P L L I  S+       AF S+  +I  +VL                        
Sbjct: 180 WSAIPMLFLLIVISS-------AFNSNFWIILFLVL------------------------ 208

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
           +  W G +++ R   L  R   Y +AARA+G+    I+F H+LPN +   + Y+      
Sbjct: 209 LFSWMGLSQVVRTEFLKARNMDYTKAARALGVNDLKIIFYHVLPNALVATITYVPFLMAA 268

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWW-LVFYPGLVVLLTALGWNLLGD 356
            +     L FLG G     A  G +V  G          +V +  + +LL+ L +  +G+
Sbjct: 269 SISTLVSLDFLGFGMPIGSASLGELVNQGKDNLTTPHLAIVAFVAISLLLSVLVF--IGE 326

Query: 357 GLRD 360
           G+RD
Sbjct: 327 GVRD 330


>sp|P45287|SAPC_HAEIN PEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN SAPC
           >gi|1074013|pir||C64134 sapC protein homolog -
           Haemophilus influenzae (strain Rd KW20)
           >gi|1574488|gb|AAC23287.1| (U32837) peptide ABC
           transporter, permease protein (sapC) [Haemophilus
           influenzae Rd]
           Length = 295
           
 Score = 97.5 bits (239), Expect = 2e-19
 Identities = 79/303 (26%), Positives = 127/303 (41%), Gaps = 44/303 (14%)

Query: 56  ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
           AL   +++I  I   +F  +LAP+  N         +    L PP       + +   I 
Sbjct: 28  ALFSFYLLIALIFTALFASYLAPYADN-------RQFIGQELMPPS------WVDRGKIA 74

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           +  G D  GRD+LS L+ G R +   +++V+     +G  LG++AG   G     +  + 
Sbjct: 75  FFFGTDDLGRDILSRLIMGTRYTLGSALLVVFSVAIIGGALGIIAGLLKGIKARFVGHIF 134

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D FLS P L++A+  S ++   L               A+FA           LLA++  
Sbjct: 135 DAFLSLPILLIAVVISTLMEPSLWN-------------AMFAT----------LLAIL-- 169

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
                 P +      +   E EK YV   +  G+  + +L   ILPNI    +  +   F
Sbjct: 170 ------PYFIHTIYRAIQKELEKDYVVMLKLEGISNQALLKSTILPNITVIYIQEVARAF 223

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNLLG 355
              VL  + LSF+ LGA  P  +WG ++ D  +      W V  PG  ++ T L   +  
Sbjct: 224 VIAVLDISALSFISLGAQRPTPEWGAMIKDSLELLYLAPWTVLLPGFAIIFTILLSIIFS 283

Query: 356 DGL 358
           +GL
Sbjct: 284 NGL 286


>pir||E83419 probable permease of ABC transporter PA1808 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
           >gi|9947792|gb|AAG05197.1|AE004607_3 (AE004607) probable
           permease of ABC transporter [Pseudomonas aeruginosa]
           Length = 339
           
 Score = 96.7 bits (237), Expect = 4e-19
 Identities = 71/249 (28%), Positives = 108/249 (42%), Gaps = 34/249 (13%)

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG D   RD+L+ ++ G R S + ++ + +    +G+ +G + GYYGG VD L  R  ++
Sbjct: 123 LGTDDQARDVLARVIYGFRVSILFALTLTVLSSLIGVTVGALQGYYGGWVDLLGQRFLEV 182

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
           +   P L L I                       +LA F        N   LL +   M+
Sbjct: 183 WSGLPVLYLLI-----------------------ILASFVQP-----NFWWLLGI---ML 211

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
           +  W     + R   L  R   YV AARA+G+    I+FRHILPN +   L ++     G
Sbjct: 212 LFSWMSLVDVVRAEFLRGRNLEYVRAARALGMRNSAIMFRHILPNAMISTLTFMPFILTG 271

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCW-WLVFYPGLVVLLTALGWNLLGD 356
            +     L FLG G  P     G +V  G       W  +  +  L V+L+ L +  +G+
Sbjct: 272 AIGTLTSLDFLGFGLPPGAPSLGELVAQGKSNLQAPWLGISAFVVLAVMLSLLVF--IGE 329

Query: 357 GLRDILDPK 365
             RD  DP+
Sbjct: 330 AARDAFDPR 338


>pir||T35940 probable transport permease protein - Streptomyces coelicolor
           >gi|4158199|emb|CAA22762.1| (AL035206) putative
           transport permease protein [Streptomyces coelicolor
           A3(2)]
           Length = 312
           
 Score = 96.3 bits (236), Expect = 5e-19
 Identities = 66/256 (25%), Positives = 109/256 (41%), Gaps = 32/256 (12%)

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
           +P G D  GRDLL   + G R S ++ +   +    +G  +G  AG  GG VD  +MR+ 
Sbjct: 86  HPFGTDDVGRDLLLRCVYGLRVSLLVGMAAALTATVVGTAVGATAGALGGWVDRGVMRVV 145

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D   S P L+L I                       ++A+F   V           V+ +
Sbjct: 146 DALSSVPHLLLGI----------------------FIVAMFRPGV---------WPVVAS 174

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
           + +  W   ARI R   L+ R + +++AA + G     +  RH+LP ++    +   L  
Sbjct: 175 VALTHWLSTARIVRAEVLSLRARPHIDAAVSGGASRWRVTVRHLLPGVLPQAALAAVLMV 234

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDG-AQYFPRCWWLVFYPGLVVLLTALGWNLL 354
              +  E+ LSFLGLG     A  G ++ +         WW   +PGL +++  L    L
Sbjct: 235 PHAMWHESALSFLGLGLPTHTASLGNLIQEARGSLLAGQWWPTLFPGLFIIVPTLAVAGL 294

Query: 355 GDGLRDILDPKTRRSI 370
               R+ ++P+ R  +
Sbjct: 295 AGAWRERINPRRRSEL 310


>gb|AAK43147.1| ABC transporter, permease [Sulfolobus solfataricus]
           Length = 326
           
 Score = 92.4 bits (226), Expect = 8e-18
 Identities = 86/340 (25%), Positives = 150/340 (43%), Gaps = 66/340 (19%)

Query: 58  IGLFI---VIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATI 114
           +G +I   +I+F L+G+F     P   NF   L           PP  + +L        
Sbjct: 37  VGFYILLGIIVFSLIGVFYTPYNPSATNFPRDL-----------PPSPQHLL-------- 77

Query: 115 YYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGK-VDELIMR 173
               G D YG D+ S LL G      +   V + G  + I++G+ AG Y    +D ++  
Sbjct: 78  ----GTDDYGHDIFSQLLVGGFPVIGVGFAVGLIGTLIAILIGVTAGLYAETIIDRILSA 133

Query: 174 LTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVI 233
           +T +FL  P ++                     +IE I   + AL  +    LG  + ++
Sbjct: 134 ITQIFLIIPGIL---------------------IIELIGAYLGALQFK----LG-YITIL 167

Query: 234 VAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITL 293
           + + +  W   AR+ R   L+ R + Y+ ++  IG    +++F  I+PN     L +I  
Sbjct: 168 LTLSLTGWAWGARVLRSLVLSLRRREYILSSDLIGESKLSVIFNQIIPN----NLPFIAS 223

Query: 294 DFGGVVLME-AGLSFL---GLGATPPIADWGRIVY---DGAQYFPRCWWLVFYPGLVVLL 346
           +F    +   AG +F+   GLG+   + +WG ++Y    G  Y    WW    PGL++ L
Sbjct: 224 NFFFTAIYGIAGFTFIYYFGLGSLTQV-NWGTMLYWSLGGEAYLRGLWWWYIPPGLMIGL 282

Query: 347 TALGWNLLGDGLRDILDPKTR-RSIEFKVKKQKKMEEGEE 385
            A  + L+  G+  + +P+ R   ++  +KK +K +E EE
Sbjct: 283 VAFSFALINIGIDRVANPRLRIWDVKKYMKKIEKTKEKEE 322


>sp|P18794|AMID_STRPN OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN AMID
           >gi|98017|pir||S11151 amiD protein - Streptococcus
           pneumoniae >gi|47345|emb|CAA35215.1| (X17337) AmiD
           protein [Streptococcus pneumoniae]
           Length = 308
           
 Score = 92.1 bits (225), Expect = 1e-17
 Identities = 77/326 (23%), Positives = 140/326 (42%), Gaps = 47/326 (14%)

Query: 43  WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
           W+ +     +    ++ L I++  IL+    P  +  K++F      + +   Y+ P   
Sbjct: 30  WKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFS--KFDFNDVSKVNDFSVRYIKP--- 84

Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
                   NA  ++  G D  G+ L   +  GAR S +IS+I  +  + +G+ +G + G 
Sbjct: 85  --------NAEHWF--GTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGI 134

Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
               VD ++M + ++  + P L++ I  +  +                            
Sbjct: 135 -SKSVDRVMMEVYNVISNIPPLLIVIVLTYSIG--------------------------- 166

Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
           AG       +I AM +  W G A + R   L  R+  Y  A+R +G PT  I+ ++I+P 
Sbjct: 167 AG----FWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQ 222

Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
           ++  I+  +T      +  EA LSF GLG    +   GR++ D +Q      +L + P  
Sbjct: 223 LVSVIVTTMTQMLPSFISYEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLT 282

Query: 343 VVLLTALGWNLLGDGLRDILDPKTRR 368
            ++L +L   ++G  L D  DP+T R
Sbjct: 283 TLVLVSLSLFVVGQNLADASDPRTHR 308


>emb|CAC12448.1| (AL445067) oligopeptide transport system, permease protein appC
           related protein [Thermoplasma acidophilum]
           Length = 318
           
 Score = 88.9 bits (217), Expect = 9e-17
 Identities = 81/323 (25%), Positives = 143/323 (44%), Gaps = 59/323 (18%)

Query: 51  NRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYN 110
           ++S    I L  ++IF ++GIF     P  Y F   L           PP S  +L    
Sbjct: 37  SKSKAGFILLVSIVIFSIIGIFYRPYNPEAYLFAKAL-----------PPNSVNIL---- 81

Query: 111 NATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDEL 170
                   G   YG+D+ S L+ GA  + +I+  V + G  + + +GL+AG+    V+  
Sbjct: 82  --------GTTGYGQDVFSQLIAGAAPTLMIAFSVGIAGTLISVFVGLLAGFSSPAVNGA 133

Query: 171 IMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLL 230
           I  +  +FL  P ++L + F          F+  H                   +LG L 
Sbjct: 134 INAIISIFLVVPGVLLIMLFGTY-------FLGIHQ------------------SLGYLP 168

Query: 231 AVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILV- 289
            +I+ ++I  W   AR  R  TL+  ++ Y+ ++  IG    +I+FR I+  I+ P++V 
Sbjct: 169 TIII-LVITGWAFGARTFRSITLSIAKRDYILSSLLIGESRLSIIFRQIMRAIM-PVVVS 226

Query: 290 --YITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVY---DGAQYFPRCWWLVFYPGLVV 344
             + T  +G + L    + +LG+G    + +WG ++Y   +   Y    WW +  P +++
Sbjct: 227 NFFFTSMYGAMGL--TFVEYLGVGNIEQV-NWGTMLYWAINNEAYLTGQWWWILPPSIMI 283

Query: 345 LLTALGWNLLGDGLRDILDPKTR 367
            L    + LL  GL ++ +P  R
Sbjct: 284 SLLMFSFILLNFGLDEMANPSLR 306


>emb|CAC17496.1| (AL450432) putative transport system integral membrane protein
           [Streptomyces coelicolor]
           Length = 284
           
 Score = 87.4 bits (213), Expect = 3e-16
 Identities = 78/309 (25%), Positives = 122/309 (39%), Gaps = 52/309 (16%)

Query: 52  RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
           R PP L G   +++ +L+ + GP +AP            H     LA P        +  
Sbjct: 21  RRPPLLTGALTLLV-LLLALLGPLVAP------------HSPTAQLAAP--------FQQ 59

Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
               + LG D  GRD+ S +L G RT  + ++        +G+  G++A     ++ +L 
Sbjct: 60  PDGRFLLGTDVLGRDVASRVLGGGRTIVLTALAGTAGAGAVGMTAGVLAAMVSRRLGDLT 119

Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
           +R  D     PAL++ +  +A  P                               G   A
Sbjct: 120 VRCVDALAVLPALLVVLVLAAGFP-------------------------------GSDAA 148

Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
           ++ A+ +   P   R+ R +  T     YVEAA A G   R +L   +LPNI GP L+  
Sbjct: 149 LVTAVALATAPFSTRVLRAAADTVLHSGYVEAALARGDTRRAVLRHDVLPNIAGPALMDT 208

Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
            L     + + A   FLGLG      DWGR+V +              P L+++L ++  
Sbjct: 209 ALRLVASLHLTATAGFLGLGRGGAAPDWGRMVSENVPGATLAAAPFLAPALLLVLLSVCV 268

Query: 352 NLLGDGLRD 360
            LL   L D
Sbjct: 269 GLLAGRLAD 277


>gb|AAK43158.1| Maltose ABC transporter, permease [Sulfolobus solfataricus]
           Length = 323
           
 Score = 85.0 bits (207), Expect = 1e-15
 Identities = 76/324 (23%), Positives = 135/324 (41%), Gaps = 66/324 (20%)

Query: 57  LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
           L G+ I+++   +GI G F  P+          S    + L PP S  +L          
Sbjct: 21  LAGIVIILVDFAIGIVGAFWTPYP--------VSETFGISL-PPSSAHIL---------- 61

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMR-LT 175
             G D +G D+LS+++    TS ++ I V      +  ++GL  GYYGGK+  +I+  LT
Sbjct: 62  --GTDEFGHDVLSVMMASTLTSLIVGISVGALIAIISTLIGLFGGYYGGKISGVIIDILT 119

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
              L+ P +IL +         ++A+  +      I L+               + V++ 
Sbjct: 120 ITALTIPGVILLVI--------IEAYFRAASSTINITLS--------------YIIVVIG 157

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIG---------- 285
           + I  W   A+  R   L+  ++ Y+ A+R IG  +  I+F  ILP+I+           
Sbjct: 158 LAITSWAFGAKQIRAQVLSISKRDYIIASRLIGEKSWRIIFNQILPSILPLTVAQFLFGV 217

Query: 286 --PILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLV 343
              IL  IT +F GV  +   ++ LG             +     Y    WW +    + 
Sbjct: 218 LYGILSLITAEFWGV--LPTNINNLGTMLF--------FISSNGAYLSNQWWWILGAIIP 267

Query: 344 VLLTALGWNLLGDGLRDILDPKTR 367
           +++   G  +L  G+ + +DP+ +
Sbjct: 268 IMVLGAGLGILNIGIDEFIDPRLK 291


>pir||C72393 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4980802|gb|AAD35390.1|AE001712_3 (AE001712)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 289
           
 Score = 82.7 bits (201), Expect = 7e-15
 Identities = 71/314 (22%), Positives = 129/314 (40%), Gaps = 54/314 (17%)

Query: 56  ALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIY 115
           A+  L  +++  ++ IF P+  P+K+   PT            PP  + +L         
Sbjct: 20  AVTVLTALVLLSILSIFSPY-DPYKWYVLPTNQ----------PPSLEHIL--------- 59

Query: 116 YPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLT 175
              G D  G+D+  LL    + S +++ I  +F   + I +G+++GY GG  D ++M LT
Sbjct: 60  ---GTDGKGQDIFWLLTFSLKNSLILATIAAVFSRIIAITIGMLSGYLGGTTDRILMALT 116

Query: 176 DMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVA 235
           D F+  P   L +  S+++ + L     S P++  +++ +F                   
Sbjct: 117 DTFMVMPVFPLLLLLSSLIKNYL-----SLPIL-GLIIGVFG------------------ 152

Query: 236 MIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
                W G AR+ R   L+ RE+ +V  ++  G+ T  ++F   +P +I  I        
Sbjct: 153 -----WAGDARVIRSMILSLREREFVVTSKFSGMRTFEVVFGDFVPYLIPVISGGFIGSM 207

Query: 296 GGVVLMEAGLSFLGLGAT--PPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGWNL 353
            G +  E  L+ LG      P +      + +        WW V  P +  +        
Sbjct: 208 MGAIGFEIVLAILGFTRVEIPTLGSMFHWMINFQAMLLGYWWWVLTPIVTAVFLFTALYT 267

Query: 354 LGDGLRDILDPKTR 367
           L   + + LDP+TR
Sbjct: 268 LSLSINEYLDPRTR 281


>pir||A72421 oligopeptide ABC transporter, permease protein - Thermotoga
           maritima (strain MSB8)
           >gi|4980561|gb|AAD35167.1|AE001694_3 (AE001694)
           oligopeptide ABC transporter, permease protein
           [Thermotoga maritima]
           Length = 287
           
 Score = 80.0 bits (194), Expect = 5e-14
 Identities = 74/313 (23%), Positives = 128/313 (40%), Gaps = 56/313 (17%)

Query: 58  IGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYYP 117
           I L +++   ++  F P+  P+ +N  P     H+ ++                      
Sbjct: 21  IVLLVLLTLSILSFFSPY-NPYLWNQVPRDLPPHWPHI---------------------- 57

Query: 118 LGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTDM 177
           LG +  G+D+   L    R S V+S+I  +    + +I+G++AGY GG  D ++  L+D 
Sbjct: 58  LGTNSMGQDIFWKLTFAVRNSLVMSLIAGLVSRIIAMIVGMIAGYKGGAADRVLTFLSDS 117

Query: 178 FLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAMI 237
           FL  P  I+ +  ++++  RL     S P+                  LG LL V     
Sbjct: 118 FLVIPLFIIIVLVASIVKGRL-----SLPM------------------LGLLLGVF---- 150

Query: 238 IVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYITLDFGG 297
              W   AR+ R   L+ RE+ +   A   G    +I+F+  LP +I  I   +  +   
Sbjct: 151 --GWAWDARVIRSQVLSLRERDFTYTALLSGSKALSIVFKEYLPFLIPLIFATLIGNMSW 208

Query: 298 VVLMEAGLSFLGLGATPPIADWGRIVYDGAQY---FPRCWWLVFYPGLVVLLTALGWNLL 354
            + ME  L+ LG+ +   I   G ++     Y       WW V  P L  +   +   L+
Sbjct: 209 AIGMEITLAILGV-SNLDIPTLGTMLQWSINYQALLLGYWWWVLTPVLTSIFLFIALYLI 267

Query: 355 GDGLRDILDPKTR 367
              + + LDP+ R
Sbjct: 268 SISISEYLDPRMR 280


>emb|CAA61524.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
           Length = 308
           
 Score = 77.3 bits (187), Expect = 3e-13
 Identities = 67/326 (20%), Positives = 135/326 (40%), Gaps = 47/326 (14%)

Query: 43  WRLMLYALNRSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGS 102
           W+ +          +  L I++  +++    P  A + +N    +  + +   Y+ P   
Sbjct: 30  WKSVFRQFFSKKSTVFMLVILVTVLMMSFIYPMFANYDFNDVSNI--NDFSKRYIWP--- 84

Query: 103 KAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGY 162
                   NA  ++  G D  G+ L   +  GAR S +IS+I  +  + +G++LG + G 
Sbjct: 85  --------NAEYWF--GTDKNGQSLFDGVGYGARNSILISVIATLINITIGVVLGAIWGV 134

Query: 163 YGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVRE 222
                D++++ + ++  + P++++ I  +  L                            
Sbjct: 135 -SKAFDKVMIEIYNIISNIPSMLIIIVLTYSLG--------------------------- 166

Query: 223 AGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPN 282
           AG       +I+A  I  W G A   R   L  R+  Y  A++ +G P   I  +++LP 
Sbjct: 167 AG----FWNLILAFCITGWIGVAYSIRVQILRYRDLEYNLASQTLGTPMYKIAVKNLLPQ 222

Query: 283 IIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGL 342
           ++  I+  ++      V  E  LSF G+G        GR++ + +       +L + P +
Sbjct: 223 LVSVIMTMLSQMLPVYVSSETFLSFFGIGLPTTTPSLGRLIANYSSNLTTNAYLFWIPLV 282

Query: 343 VVLLTALGWNLLGDGLRDILDPKTRR 368
            ++L +L   ++G  L D  DP++ R
Sbjct: 283 TLILVSLPLYIVGQNLADASDPRSHR 308


>pir||B82876 oligopeptide transport system permease protein UU561 [imported] -
           Ureaplasma urealyticum
           >gi|6899567|gb|AAF30974.1|AE002154_10 (AE002154)
           oligopeptide transport system permease protein
           [Ureaplasma urealyticum]
           Length = 332
           
 Score = 76.9 bits (186), Expect = 4e-13
 Identities = 75/311 (24%), Positives = 129/311 (41%), Gaps = 53/311 (17%)

Query: 52  RSPPALIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNN 111
           RS   LIGL I+II  ++ I  PF         P                +K  L+Y+ +
Sbjct: 71  RSFSGLIGLAIIIILFILAIIIPFTTGSPTELRP----------------NKRYLDYFTD 114

Query: 112 ATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELI 171
             I+   G D+ GRDL ++L  G R S  I+IIV    + +G+ LG++ GY+        
Sbjct: 115 GFIF---GTDNNGRDLWAMLWWGLRYSLGIAIIVTAIELVVGVTLGILMGYF-------- 163

Query: 172 MRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLA 231
               +MF      I+ I             +++ P I  I+L I  + ++ +  +     
Sbjct: 164 ----EMFDKIMTFIIKI-------------LTNVPTI--IILMILTIILKPSFGV----- 199

Query: 232 VIVAMIIVWWPGYARITRGSTLTEREKLYVEAARAIGLPTRTILFRHILPNIIGPILVYI 291
           +I A+    W   A   R      R  L+V A++ +G     I+  + LP +I  ++  +
Sbjct: 200 MIFAISFSGWIAMANQMRSQVKRARSFLWVAASKTLGTKAWKIIL-NFLPILIPMMITQL 258

Query: 292 TLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQYFPRCWWLVFYPGLVVLLTALGW 351
                G +L E+ L+F+GL + P     G ++ DG+            P  +++      
Sbjct: 259 VFSIPGAILAESSLAFIGL-SLPNTPTLGNLIADGSSIITLYPRFTLIPSFLLVCLVASI 317

Query: 352 NLLGDGLRDIL 362
            L+G   +D L
Sbjct: 318 QLVGGATQDAL 328


>gb|AAB67065.1| (U94729) putative transmembrane protein [Salmonella typhimurium]
           Length = 270
           
 Score = 74.9 bits (181), Expect = 2e-12
 Identities = 65/259 (25%), Positives = 105/259 (40%), Gaps = 33/259 (12%)

Query: 87  LYTSHYDNVYLAPPGSKAVLEYYNNATIYYPLGADHYGRDLLSLLLQGARTSFVISIIVI 146
           L+ + Y    L+ P    +L  + +  I +  G D+ GRD+     QGA TS  I +   
Sbjct: 20  LFIAGYGYATLSQPPEVNLLARHLSPDIQHWFGTDNLGRDVWLRCFQGAFTSLQIGVGAA 79

Query: 147 MFGVPLGIILGLVAGYYGGKVDELIMRLTDMFLSFPALILAIAFSAVLPDRLQAFISSHP 206
           +    + +++  VA  +  ++D L+  +TD  L+ P L+L                    
Sbjct: 80  LCSGVIALVMAAVARIH-PRLDLLVRLITDAMLAMPHLLL-------------------- 118

Query: 207 VIEKIVLAIFALDVREAGNLGRLLAVIVAMIIVWWPGYARITRGSTLTEREKLYVEAARA 266
               ++L  F L   ++G       VI A+ +  WP  A I R       +  Y+     
Sbjct: 119 ----LILICFTLGGGKSG-------VIAAVALTHWPRLALILRADAERVAQSDYLTLTYR 167

Query: 267 IGLPTRTILFRHILPNIIGPILVYITLDFGGVVLMEAGLSFLGLGATPPIADWGRIVYDG 326
           +G         H  P ++   L    L F   VL  A LSFLG G  P     G ++ D 
Sbjct: 168 LGHGHLYCWRYHYFPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADA 227

Query: 327 AQYFPR-CWWLVFYPGLVV 344
            ++     WWLV +PGL++
Sbjct: 228 LRFISHGNWWLVLFPGLML 246


>pir||D81253 probable peptide ABC-transport system permease protein Cj1582c
           [imported] - Campylobacter jejuni (strain NCTC 11168)
           >gi|6968999|emb|CAB73570.1| (AL139079) putative peptide
           ABC-transport system permease protein [Campylobacter
           jejuni]
           Length = 264
           
 Score = 69.5 bits (167), Expect = 7e-11
 Identities = 75/307 (24%), Positives = 123/307 (39%), Gaps = 56/307 (18%)

Query: 57  LIGLFIVIIFILVGIFGPFLAPWKYNFFPTLYTSHYDNVYLAPPGSKAVLEYYNNATIYY 116
           LI L  +I   L  +F PFLA +       + ++H +N++ AP                Y
Sbjct: 7   LIILAPLIFLFLCALFAPFLALFD------ILSTHLENLHQAP-------------NFTY 47

Query: 117 PLGADHYGRDLLSLLLQGARTSFVISIIVIMFGVPLGIILGLVAGYYGGKVDELIMRLTD 176
            LG D  GRDL S LL   R S +I +   +  +   +    +A  +        MR+ +
Sbjct: 48  ILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCF---FYVFCMRILE 104

Query: 177 MFLSFPALILAIAFSAVLPDRLQAFISSHPVIEKIVLAIFALDVREAGNLGRLLAVIVAM 236
            FL+ PA +L + F ++             +   + L IF +                  
Sbjct: 105 FFLALPAFLLMMFFQSM-------------ITSDVFLMIFLI------------------ 133

Query: 237 IIVWWPGYARITRGSTLTEREKL-YVEAARAIGLPTRTILFRHILPNIIGPILVYITLDF 295
            ++ W   ARI   S L   E L + +A   +G       F+ ++P +   I      + 
Sbjct: 134 ALIHWCFIARIIE-SELKRLENLDFYKANIVLGRTKFRAFFKDLIPALKTLIFTLFIFNI 192

Query: 296 GGVVLMEAGLSFLGLGATPPIADWGRIVYDGAQ-YFPRCWWLVFYPGLVVLLTALGWNLL 354
              +  EA LSF GLG    I   G ++ + ++  F   WW++ +P L +LL  L    L
Sbjct: 193 VHAIATEATLSFFGLGLGFEIPTLGTLLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWL 252

Query: 355 GDGLRDI 361
           G+ L+ I
Sbjct: 253 GNFLQKI 259


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.147    0.451 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 147956296
Number of Sequences: 2977
Number of extensions: 6459588
Number of successful extensions: 26847
Number of sequences better than 1.0e-10: 128
Number of HSP's better than  0.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 26472
Number of HSP's gapped (non-prelim): 171
length of query: 387
length of database: 189,106,746
effective HSP length: 50
effective length of query: 337
effective length of database: 159,182,396
effective search space: 53644467452
effective search space used: 53644467452
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 166 (69.1 bits)