BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1874 (dppD-2) DE:PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN
(329 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75117 peptide abc transporter ATP-binding protein PAB1874 ... 663 0.0
pir||F71014 probable dipeptide transport ATP-binding protein dpp... 637 0.0
pir||F72617 probable dipeptide transport system ATP-binding prot... 464 e-130
pir||F75202 dipeptide abc transporter, dipeptide-binding protein... 363 2e-99
pir||C72300 oligopeptide ABC transporter, ATP-binding protein - ... 350 2e-95
pir||A72371 oligopeptide ABC transporter, ATP-binding protein - ... 334 7e-91
dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 329 3e-89
pir||H75380 peptide ABC transporter, ATP-binding protein - Deino... 326 3e-88
pir||C72424 oligopeptide ABC transporter, ATP-binding protein - ... 323 2e-87
pir||D72371 oligopeptide ABC transporter, ATP-binding protein - ... 322 3e-87
sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 317 1e-85
gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocy... 312 4e-84
gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis] 311 6e-84
pir||A72452 probable peptide transport ATP-binding protein APE22... 309 3e-83
dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 307 1e-82
sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 307 1e-82
pir||H72215 oligopeptide ABC transporter, ATP-binding protein - ... 303 1e-81
emb|CAC05750.1| (AL391751) putative peptide transport system ATP... 302 3e-81
sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 300 1e-80
pir||D38447 sporulation initiation protein spo0KD - Bacillus sub... 300 1e-80
gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis] 300 1e-80
gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola] 300 1e-80
pir||G71211 probable oligopeptide transport ATP-binding protein ... 300 2e-80
dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 299 3e-80
pir||G75026 oligopeptide transport ATP-binding protein appd. PAB... 299 3e-80
sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 298 8e-80
pir||D72720 probable oligopeptide transport ATP-binding protein ... 293 2e-78
sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 293 2e-78
gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD... 287 1e-76
pir||T34759 oligopeptide ABC transporter ATP-binding protein - S... 287 1e-76
dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 287 1e-76
pir||T45280 probable ABC transporter intracellular ATPase chain ... 286 3e-76
gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [H... 283 2e-75
sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 283 2e-75
pir||E72536 probable oligopeptide transport ATP-binding protein ... 281 9e-75
pir||D72289 oligopeptide ABC transporter, ATP-binding protein - ... 280 1e-74
pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC... 269 3e-71
dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding prot... 268 5e-71
sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 268 5e-71
dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-bin... 268 8e-71
sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 266 2e-70
pir||E83082 probable ATP-binding component of ABC transporter PA... 265 5e-70
pir||G72283 oligopeptide ABC transporter, ATP-binding protein - ... 264 1e-69
pir||G71014 probable dipeptide transport ATP-binding protein dpp... 263 3e-69
gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dp... 263 3e-69
pir||B72424 oligopeptide ABC transporter, ATP-binding protein - ... 262 5e-69
emb|CAA61525.1| (X89237) oligopeptidepermease [Streptococcus pyo... 261 6e-69
pir||B72421 oligopeptide ABC transporter, ATP-binding protein - ... 261 6e-69
sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 260 1e-68
pir||QREBOT oligopeptide transport protein oppD - Salmonella typ... 260 1e-68
sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 259 4e-68
pir||B72300 oligopeptide ABC transporter, ATP-binding protein - ... 257 2e-67
sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 256 2e-67
dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [O... 256 3e-67
pir||C72289 oligopeptide ABC transporter, ATP-binding protein - ... 255 6e-67
sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 254 1e-66
pir||H72366 oligopeptide ABC transporter, ATP-binding protein - ... 254 1e-66
pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 ... 253 2e-66
gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (d... 252 4e-66
pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf... 252 5e-66
gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana] 249 4e-65
dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-bin... 249 4e-65
pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 ... 249 5e-65
pir||A72216 oligopeptide ABC transporter, ATP-binding protein - ... 247 2e-64
pir||H71951 dipeptide transport system dipeptide transport syste... 246 2e-64
pir||T34760 oligopeptide ABC transporter ATP-binding protein - S... 246 3e-64
pir||F72428 oligopeptide ABC transporter, ATP-binding protein - ... 245 4e-64
emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD)... 245 4e-64
pir||E64557 dipeptide transport ATP-binding protein dppD - Helic... 245 5e-64
pir||F71483 probable dipeptide transport - Chlamydia trachomatis... 243 2e-63
gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sul... 243 2e-63
pir||D71163 probable oligopeptide transport ATP-binding protein ... 241 8e-63
dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-bindin... 240 1e-62
sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 240 1e-62
pir||E64820 probable oligopeptide transport protein - Escherichi... 240 2e-62
pir||E70141 oligopeptide transport ATP-binding protein oppD - Ly... 239 3e-62
dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-bin... 239 3e-62
pir||E71130 probable oligopeptide transport ATP-binding protein ... 239 4e-62
pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei ... 238 5e-62
emb|CAC16446.1| (AL450165) putative oligopeptide ABC transporter... 238 5e-62
pir||F71211 probable oligopeptide transport ATP-binding protein ... 238 9e-62
pir||G75202 dipeptide abc transporter, dipeptide-binding protein... 236 2e-61
sp|Q07733|OPPD_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 236 3e-61
sp|P50980|OPPD_LACLC OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 236 3e-61
pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 ... 236 3e-61
pir||F75026 oligopeptide transport ATP-binding protein appf. PAB... 235 6e-61
gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis] 235 8e-61
gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter A... 231 7e-60
pir||C72371 oligopeptide ABC transporter, ATP-binding protein - ... 231 7e-60
sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 231 9e-60
pir||B82393 ABC transporter, ATP-binding protein VCA0977 [import... 231 1e-59
emb|CAA39791.1| (X56347) OppF [Bacillus subtilis] 230 1e-59
pir||D72393 oligopeptide ABC transporter, ATP-binding protein - ... 230 1e-59
pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 ... 230 2e-59
gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding;... 230 2e-59
pir||A72618 probable oligopeptide transport ATP-binding protein ... 229 3e-59
sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 229 3e-59
sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDIN... 229 4e-59
pir||G75380 peptide ABC transporter, ATP-binding protein - Deino... 229 4e-59
gb|AAG20460.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 229 4e-59
gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T... 228 6e-59
pir||C72452 probable peptide transport ATP-binding protein APE22... 228 1e-58
gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis] ... 227 2e-58
pir||D83419 probable ATP-binding component of ABC transporter PA... 226 2e-58
gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF... 225 5e-58
pir||F83082 probable ATP-binding component of ABC dipeptide tran... 224 1e-57
emb|CAC05751.1| (AL391751) putative peptide transport system ATP... 224 1e-57
emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related ... 224 1e-57
sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 223 3e-57
gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1] 222 3e-57
pir||C75142 oligopeptide transport ATP-binding protein appf PAB0... 222 4e-57
pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd... 222 4e-57
gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola] 220 2e-56
gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T... 219 3e-56
gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-bindi... 219 5e-56
sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 218 6e-56
sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPP... 217 1e-55
sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 217 2e-55
sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 216 2e-55
sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 215 4e-55
sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 215 4e-55
pir||F71130 probable oligopeptide transport ATP-binding protein ... 215 4e-55
gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia... 215 6e-55
pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC... 214 1e-54
pir||C82442 probable peptide ABC transporter, ATP-binding protei... 214 1e-54
pir||C72536 probable oligopeptide transport ATP-binding protein ... 213 2e-54
pir||B69856 oligopeptide transport ATP-binding protein homolog y... 213 2e-54
dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus] 213 3e-54
emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi] 212 6e-54
sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 210 1e-53
sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 210 2e-53
gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dp... 210 2e-53
gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae] 208 6e-53
gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus ... 208 7e-53
pir||T03431 probable transport protein accB - Agrobacterium tume... 207 2e-52
pir||S75333 oligopeptide transport protein oppF - Synechocystis ... 206 2e-52
pir||H70788 probable peptidetransport system ABC-transporter ATP... 205 8e-52
gi|10954941 Probable accB [Agrobacterium tumefaciens] >gi|649829... 205 8e-52
gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus ... 204 1e-51
pir||B72282 oligopeptide ABC transporter, ATP-binding protein - ... 204 1e-51
pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 ... 204 1e-51
gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport pro... 203 2e-51
emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding prot... 203 3e-51
gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (d... 202 5e-51
gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . ... 201 7e-51
dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [O... 201 1e-50
dbj|BAB04289.1| (AP001509) oligopeptide ABC transporter (ATP-bin... 200 2e-50
sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PR... 199 3e-50
dbj|BAA15988.1| (D90849) Oligopeptide transport ATP-binding prot... 199 3e-50
pir||D75142 oligopeptide transport ATP-binding protein appf PAB0... 198 8e-50
pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 ... 197 2e-49
gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocy... 195 5e-49
pir||F71163 probable oligopeptide transport ATP-binding protein ... 192 4e-48
pir||T35983 probable peptide transport ATP-binding protein - Str... 192 4e-48
pir||B83389 probable ATP-binding component of ABC transporter PA... 192 6e-48
gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-bindi... 191 1e-47
sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 189 4e-47
pir||F70141 probable oligopeptide transport ATP-binding protein ... 187 2e-46
pir||E71545 probable oligopeptide transport ATPase - Chlamydia t... 187 2e-46
emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding pr... 187 2e-46
emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport s... 186 3e-46
sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN ... 185 5e-46
emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyo... 185 5e-46
gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus p... 185 5e-46
pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf... 183 2e-45
pir||T35941 probable ABC-type transport systsem ATP-binding prot... 178 6e-44
pir||C72421 oligopeptide ABC transporter, ATP-binding protein - ... 177 1e-43
gi|10954710 hypothetical ABC-transporter gene~similar to moaD ge... 176 4e-43
pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AA... 169 3e-41
pir||B64551 oligopeptide ABC transporter, ATP-binding protein - ... 166 3e-40
pir||E71957 ABC transporter, ATP-binding protein - Helicobacter ... 165 8e-40
pir||E72393 oligopeptide ABC transporter, ATP-binding protein - ... 164 1e-39
pir||A72284 oligopeptide ABC transporter, ATP-binding protein - ... 163 3e-39
gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus ... 152 6e-36
pir||G72049 peptide ABC transporter, ATP-binding protein CP0064 ... 148 1e-34
gb|AAF77616.1|AF151721_2 (AF151721) oligopeptide permease subuni... 146 2e-34
pir||S56325 hisP protein-like nucleotide-binding protein phnK - ... 141 8e-33
sp|P16678|PHNK_ECOLI PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN ... 141 1e-32
sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 129 6e-29
sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEI... 126 4e-28
gi|11498955 phosphate ABC transporter, ATP-binding protein (pstB... 121 1e-26
pir||H72275 phosphate ABC transporter, ATP-binding protein - The... 119 5e-26
gb|AAG18995.1| (AE004999) phosphate transport ATP-binding; PstB2... 117 2e-25
emb|CAA10913.1| (AJ222649) sapF [Erwinia chrysanthemi] 115 6e-25
emb|CAC00366.1| (AL160371) probable oligopeptide transport ATP-b... 114 2e-24
dbj|BAB07815.1| (AB036417) CysA protein [Acetabularia acetabulum] 110 2e-23
sp|P31134|POTG_ECOLI PUTRESCINE TRANSPORT ATP-BINDING PROTEIN PO... 109 6e-23
pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB... 108 8e-23
pir||C75369 amino acid ABC transporter, ATP-binding protein - De... 108 1e-22
gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . ... 106 5e-22
pir||A82184 ABC transporter, ATP-binding protein VC1568 [importe... 103 3e-21
pir||H82377 ABC transporter, ATP-binding protein VCA1101 [import... 103 3e-21
gb|AAC05643.1| (AF033673) unknown [Pseudomonas marginalis pv. al... 101 1e-20
pir||T47012 hypothetical protein [imported] - Yersinia pestis >g... 101 2e-20
gb|AAF64239.1|AF249736_3 (AF249736) ABC transporter [Pseudomonas... 100 3e-20
emb|CAC11998.1| (AL445065) ABC transporter related protein [Ther... 100 4e-20
pir||T34822 ABC-transporter ATP binding protein - Streptomyces c... 99 6e-20
gi|10955070 agtA [Agrobacterium tumefaciens] >gi|6689864|gb|AAF2... 99 6e-20
gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Myc... 98 2e-19
pir||A82932 ABC Transporter UU118 [imported] - Ureaplasma urealy... 97 2e-19
pir||G83245 probable ATP-binding component of ABC transporter PA... 95 1e-18
pir||S75652 ABC-type transport protein sll1878 - Synechocystis s... 95 1e-18
pir||T10888 iron utilization protein C - Haemophilus influenzae ... 94 2e-18
sp|P44513|HITC_HAEIN IRON(III)-TRANSPORT ATP-BINDING PROTEIN HIT... 94 3e-18
pir||A64455 methyl coenzyme M reductase (EC 1.8.-.-) component A... 94 3e-18
gb|AAC21775.1| (U32695) iron(III) ABC transporter, ATP-binding p... 93 4e-18
emb|CAC10293.1| (AL442629) putative ABC transport system ATP bin... 93 5e-18
gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana] 92 6e-18
pir||B82185 glycerol-3-phosphate ABC transporter, ATP-binding pr... 88 1e-16
sp|P15361|P29_MYCHR PROBABLE ABC TRANSPORTER ATP-BINDING PROTEIN... 87 2e-16
pir||T35450 ABC transporter ATP binding protein - Streptomyces c... 87 2e-16
emb|CAB61861.1| (AL133252) putative ABC-transporter ATP binding ... 87 2e-16
gb|AAA16186.1| (L07065) P-glycoprotein/multidrug resistance prot... 87 3e-16
pir||A47377 multidrug resistance protein Mdr50 - fruit fly (Dros... 87 3e-16
gi|10955064 motB [Agrobacterium tumefaciens] >gi|3064078|gb|AAC1... 87 4e-16
gb|AAD53162.1|AF176824_5 (AF176824) ATP-binding protein of ABC t... 87 4e-16
gb|AAB51510.1| (U91632) sugar transporter [Agrobacterium tumefac... 86 6e-16
gb|AAD02045.1| (AF035964) ATP-binding protein B [Brucella abortus] 85 8e-16
gb|AAF58271.1| (AE003815) Mdr50 gene product [Drosophila melanog... 84 2e-15
pir||E72314 ribose ABC transporter, ATP-binding protein - Thermo... 83 3e-15
pir||H83346 probable ATP-binding/permease fusion ABC transporter... 83 4e-15
pir||T36431 probable ABC-type transport system ATP-binding prote... 83 5e-15
pir||T26313 hypothetical protein W09D6.6 - Caenorhabditis elegan... 82 7e-15
pir||T18939 hypothetical protein C05A9.1 - Caenorhabditis elegan... 82 9e-15
pir||S74440 iron(III) dicitrate transport system permease protei... 81 2e-14
dbj|BAB07160.1| (AP001518) L-arabinose ABC transporter (ATP-bind... 80 3e-14
sp|P55453|Y4FO_RHISN PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEI... 79 6e-14
pir||T21267 hypothetical protein F22E10.2 - Caenorhabditis elega... 79 6e-14
pir||G75142 abc transporter, ATP-binding protein PAB2147 - Pyroc... 78 1e-13
pir||G81022 ABC transporter, ATP-binding protein NMB1966 [import... 78 1e-13
dbj|BAA75396.1| (AB013378) YhaQ [Bacillus halodurans] 78 2e-13
pir||T10656 probable ABC-type transport protein T5F17.70 - Arabi... 78 2e-13
pir||T22094 hypothetical protein ZK455.7 - Caenorhabditis elegan... 77 2e-13
pir||S72783 probable ABC-type transport protein B1496_F3_97 - My... 77 3e-13
gb|AAD02044.1| (AF035964) ATP-binding protein A [Brucella abortus] 77 3e-13
pir||B81966 probable ABC transport ATP-binding protein NMA0485 [... 76 4e-13
dbj|BAB06054.1| (AP001515) ABC transporter (ATP-binding protein)... 76 4e-13
pir||T10657 probable ABC-type transport protein T5F17.80 - Arabi... 76 5e-13
gb|AAG09827.1|AF287697_1 (AF287697) half-molecule ABC transporte... 76 5e-13
emb|CAC11370.1| (AL445063) gliding motility protein related [The... 76 5e-13
pir||S74597 ABC-type transport protein sll1041 - Synechocystis s... 75 9e-13
gb|AAD29087.1|AF082879_3 (AF082879) FepC [Yersinia enterocolitica] 75 2e-12
pir||S76856 hypothetical protein - Synechocystis sp. (strain PCC... 74 2e-12
gb|AAC71706.1| (AF061070) PtxA [Pseudomonas stutzeri] 74 2e-12
pir||T21268 hypothetical protein F22E10.3 - Caenorhabditis elega... 73 4e-12
pir||T40790 probable permease - fission yeast (Schizosaccharomyc... 73 5e-12
pir||E70871 hypothetical protein Rv1458c - Mycobacterium tubercu... 72 8e-12
gb|AAD43625.1|AF071410_1 (AF071410) ATP-binding cassette multidr... 72 8e-12
pir||H82381 toxin secretion ATP-binding protein VCA1084 [importe... 72 8e-12
emb|CAB39282.1| (AJ133704) NatA protein [Anabaena sp.] 71 1e-11
pir||S47673 leucine transport protein livF - Escherichia coli >g... 71 2e-11
sp|Q61102|ABC7_MOUSE ATP-BINDING CASSETTE, SUB-FAMILY B, MEMBER ... 71 2e-11
pir||F71732 ABC transporter ATP-binding protein (abcT3) RP214 - ... 71 2e-11
gi|6322640 ABC transporter, glycoprotein, component of a-factor ... 71 2e-11
prf||1512309A multidrug resistance P glycoprotein [Saccharomyces... 71 2e-11
pir||I39978 subtilin spaB - Bacillus subtilis >gi|143559|gb|AAA2... 69 7e-11
sp|P55469|Y4GM_RHISN PROBABLE ABC TRANSPORTER ATP-BINDING PROTEI... 69 9e-11
>pir||H75117 peptide abc transporter ATP-binding protein PAB1874 - Pyrococcus
abyssi (strain Orsay) >gi|5458168|emb|CAB49657.1|
(AJ248285) PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN
[Pyrococcus abyssi]
Length = 329
Score = 663 bits (1691), Expect = 0.0
Identities = 329/329 (100%), Positives = 329/329 (100%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ
Sbjct: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY
Sbjct: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS
Sbjct: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA
Sbjct: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR
Sbjct: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
Query: 301 CPKVMSICKEKVPELKEIEPGHFVACHLY 329
CPKVMSICKEKVPELKEIEPGHFVACHLY
Sbjct: 301 CPKVMSICKEKVPELKEIEPGHFVACHLY 329
>pir||F71014 probable dipeptide transport ATP-binding protein dppD - Pyrococcus
horikoshii >gi|3257835|dbj|BAA30518.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppD [Pyrococcus horikoshii]
Length = 329
Score = 637 bits (1626), Expect = 0.0
Identities = 312/329 (94%), Positives = 323/329 (97%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
MRKVPEPILQVR+LTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ
Sbjct: 1 MRKVPEPILQVRDLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
LIESPGRIV GQVLYYR+DGSVVDLLKLSEEEIRKIRGNEIAYIFQDPH+SLDPLYTVGY
Sbjct: 61 LIESPGRIVGGQVLYYREDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHSSLDPLYTVGY 120
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
QIAEAMEVHGKIK+IKEGI+KAVDILKSVLIPDP RRVNNYPHELSGGMKQRVVIGIG+S
Sbjct: 121 QIAEAMEVHGKIKNIKEGIKKAVDILKSVLIPDPQRRVNNYPHELSGGMKQRVVIGIGLS 180
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
NNPRILIADEPTTALDVT+QAQILDL+N++KEKYKATVILITHNLGVVAETADRVAVMYA
Sbjct: 181 NNPRILIADEPTTALDVTVQAQILDLINQLKEKYKATVILITHNLGVVAETADRVAVMYA 240
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLI PP GCRFHPR
Sbjct: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLINPPSGCRFHPR 300
Query: 301 CPKVMSICKEKVPELKEIEPGHFVACHLY 329
CPK M ICK+KVPELKEIEPGHFVACHLY
Sbjct: 301 CPKAMDICKQKVPELKEIEPGHFVACHLY 329
>pir||F72617 probable dipeptide transport system ATP-binding protein APE1399 -
Aeropyrum pernix (strain K1) >gi|5105082|dbj|BAA80396.1|
(AP000061) 333aa long hypothetical dipeptide transport
system ATP-binding protein [Aeropyrum pernix]
Length = 333
Score = 464 bits (1180), Expect = e-130
Identities = 216/321 (67%), Positives = 265/321 (82%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+PI++V NL V+FYTYAGIVKAIE VSF + +GET+ LVGETGCGKSVTSRA+T+LI P
Sbjct: 7 DPIIEVENLKVYFYTYAGIVKAIEDVSFRICRGETYCLVGETGCGKSVTSRALTRLIYPP 66
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
GRIVEG++ YY + G VD++ L E+E+R+IRG EIAYIFQDP A+LDPLYT+GYQ+ E
Sbjct: 67 GRIVEGKIYYYPEPGRRVDIMSLDEKELRRIRGEEIAYIFQDPSAALDPLYTIGYQVGET 126
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
M HG+++S++EG+++AV +LK+VL+PDP +RV +YPHELSGGMKQR VIGI +SN P++
Sbjct: 127 MLAHGRVRSLREGVRRAVGVLKTVLMPDPEKRVKSYPHELSGGMKQRGVIGISLSNRPKL 186
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVTIQAQI+DLL ++K ++ T++LITHNLG+VAE DRVAVMYAG IVE
Sbjct: 187 LIADEPTTALDVTIQAQIMDLLTQLKREHGLTLLLITHNLGLVAEYCDRVAVMYAGNIVE 246
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
VD++F NPLHPYT+ L+RAVPNPL KIE LE IPGTVPNLITPP GCRFHPRCP
Sbjct: 247 EAPVDELFSNPLHPYTRALIRAVPNPLAKIENLEHIPGTVPNLITPPPGCRFHPRCPLAF 306
Query: 306 SICKEKVPELKEIEPGHFVAC 326
C + P LKE PGH AC
Sbjct: 307 DRCSREKPLLKEYSPGHKAAC 327
>pir||F75202 dipeptide abc transporter, dipeptide-binding protein PAB0094 -
Pyrococcus abyssi (strain Orsay)
>gi|5457578|emb|CAB49069.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 323
Score = 363 bits (921), Expect = 2e-99
Identities = 180/324 (55%), Positives = 242/324 (74%), Gaps = 7/324 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
EP++++ NL + F T G+VKAI+ VSFD+ KGE AL+GETGCGKSVT++AI +L+
Sbjct: 4 EPLVKIENLYIDFITDRGVVKAIDGVSFDIRKGEILALIGETGCGKSVTAKAIMRLLPR- 62
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
IV+G+++Y + LL+L E E+RKIRG EIA IFQDP SL+P++T+ Q+ E
Sbjct: 63 NAIVKGKIIYKGRN-----LLELPEREMRKIRGKEIAMIFQDPLTSLNPVFTIEDQMGEM 117
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+VH K+ + + + V +LK V IPDP +RV +YP ELSGGM+QRV+I + +S P +
Sbjct: 118 FKVH-KLPVVGSILDEIVKLLKMVKIPDPEKRVKSYPFELSGGMRQRVMIAMMLSAKPSL 176
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVTIQAQI++L+ +++EK++ +++LITHN GVVAE ADRV VMYAG++VE
Sbjct: 177 LIADEPTTALDVTIQAQIMNLMLELREKFETSILLITHNPGVVAEMADRVVVMYAGQVVE 236
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
I V++IF NPLHPYTQGLLRA+P +LE IPG VPNL+ PP GCRFHPRC K
Sbjct: 237 IAPVEEIFDNPLHPYTQGLLRALPRGHKTERELENIPGRVPNLLNPPKGCRFHPRCKKAK 296
Query: 306 SICKEKVPELKEIEPGHFVACHLY 329
+C ++ P+L E+E H+VACHLY
Sbjct: 297 EMCSKEKPKLIEVEKEHYVACHLY 320
>pir||C72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981605|gb|AAD36139.1|AE001766_5 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 350 bits (888), Expect = 2e-95
Identities = 170/323 (52%), Positives = 237/323 (72%), Gaps = 3/323 (0%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+LQ++NL +F+T G+VKA++ VSF++ +G T +VGE+GCGKSVT+R+I +L+ + GR
Sbjct: 4 LLQIKNLRTYFFTDEGVVKAVDGVSFEIEEGRTLGVVGESGCGKSVTARSIIKLLSTAGR 63
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
IV G++LY D G +VDL+K S+EEIRK+RG IA IFQ+P A+ P+YT+G QI E M
Sbjct: 64 IVSGEILYNMD-GQMVDLVKFSKEEIRKVRGRHIAMIFQEPMAAFSPVYTIGDQITEGMI 122
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
H I +E ++AV++L+ V IP P + +++YP E SGGM+QR +I + +S NPR+LI
Sbjct: 123 YHFGITK-QEARERAVELLRRVGIPKPEKMIDSYPFEYSGGMRQRAMIAMALSCNPRLLI 181
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDVTIQAQ+LDLL ++++YK +++ITHN+GVVAE AD V VMY G++VE
Sbjct: 182 ADEPTTALDVTIQAQVLDLLKDLQQEYKMAIMMITHNMGVVAEMADHVVVMYLGRVVESA 241
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM-S 306
V+++F NP HPYT LLR++P ++E+LE I G VP+ P GCRFHPRCP +M
Sbjct: 242 PVEELFYNPKHPYTSLLLRSIPVVGKRVERLEVIEGDVPDPRNMPKGCRFHPRCPYMMKG 301
Query: 307 ICKEKVPELKEIEPGHFVACHLY 329
IC E+ P E+ P H V+C LY
Sbjct: 302 ICDEREPVEVEVGPEHRVSCFLY 324
>pir||A72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981009|gb|AAD35583.1|AE001726_17 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 333
Score = 334 bits (848), Expect = 7e-91
Identities = 168/320 (52%), Positives = 230/320 (71%), Gaps = 8/320 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L+V+NL+ FY GIVKA+ VSF + E +VGETG GKSVT ++I +LI+ PG+
Sbjct: 7 LLEVKNLSTWFYMEEGIVKAVNDVSFSLNSNEVLGIVGETGSGKSVTVKSIMRLIKPPGK 66
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
IV G+++Y D +LK+ E+E+ +IRG EIA IFQDP SL+PLYT+G Q+ E +
Sbjct: 67 IVSGEIIYKGQD-----ILKIPEKEMHRIRGKEIAMIFQDPMMSLNPLYTIGDQLMETIR 121
Query: 128 VH-GKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
H G K + +AV++L+ V IP+P +R+NNYP E SGGM+QRVVI I +S NP +L
Sbjct: 122 YHLGYDK--RRAYLRAVEMLELVGIPEPEKRMNNYPFEFSGGMRQRVVIAIALSCNPSVL 179
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQIL+L+ ++++++K +I ITH+LGV+A ADR+ VMY G+ VEI
Sbjct: 180 IADEPTTALDVTIQAQILELMKELQKEFKTGLIFITHDLGVIASMADRIMVMYGGRQVEI 239
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
GT DQIF +P HPYT+ LLR+VP ++EKLE+IPG P ++ P C F PRCP+ +
Sbjct: 240 GTSDQIFYSPRHPYTKMLLRSVPRVDKRLEKLESIPGQPPRMVDIPPVCPFLPRCPRRVE 299
Query: 307 ICKEKVPELKEIEPGHFVAC 326
C +++PEL EIE H+V C
Sbjct: 300 RCLKELPELSEIEENHYVRC 319
>dbj|BAB03747.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 347
Score = 329 bits (834), Expect = 3e-89
Identities = 166/326 (50%), Positives = 234/326 (70%), Gaps = 8/326 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E IL+VR+L F+T A VKA++ V+F V KG+T +VGE+G GKS+TS +I +LI+ P
Sbjct: 10 ETILEVRDLRTSFFTEAFEVKAVDGVTFSVPKGKTLGIVGESGSGKSITSLSILKLIQEP 69
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
G++V G++ + ++ L+ +E +RKIRGNEI+ IFQ+P SL+P+YTVG QI+E+
Sbjct: 70 GKVVGGEINFKGEN-----LVTKNEAYMRKIRGNEISMIFQEPMTSLNPVYTVGQQISES 124
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+H K+ KE ++++VD+LK V IP P +RV+ YPHELSGGM+QRV+I + ++ NP +
Sbjct: 125 FRIHEKLGK-KEALKRSVDMLKLVGIPSPEKRVHQYPHELSGGMRQRVMIAMALACNPEL 183
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVTIQAQIL+L+ ++++ ++I+ITH+LGVVAET D VAVMY GK+VE
Sbjct: 184 LIADEPTTALDVTIQAQILELMKDLQDRLGMSIIMITHDLGVVAETCDYVAVMYCGKVVE 243
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKI--EKLEAIPGTVPNLITPPGGCRFHPRCPK 303
V +FKNP HPYT GLL ++P + E+L I G VP+ P GCRF PRCP
Sbjct: 244 YADVKTLFKNPRHPYTVGLLNSLPRHDIDLEDEELSVIKGNVPSPADMPEGCRFAPRCPF 303
Query: 304 VMSICKEKVPELKEIEPGHFVACHLY 329
ICKE++P+L+ E G+ + C +Y
Sbjct: 304 ASDICKERLPDLETDENGNQIRCWVY 329
>pir||H75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459331|gb|AAF11130.1|AE002000_6 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 386
Score = 326 bits (826), Expect = 3e-88
Identities = 168/331 (50%), Positives = 228/331 (68%), Gaps = 11/331 (3%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E +L V NL +F T G+VK+++ V+F + KGET A+VGE+G GKSVTS + +LI P
Sbjct: 31 EVLLAVNNLKTYFNTDDGVVKSVDGVTFHIKKGETLAVVGESGSGKSVTSLTVMRLIPMP 90
Query: 66 -GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
G+I G++L+ DG +L+ +SE E+R+IRGN+I+ IFQ+P SL+P+YTVG QIAE
Sbjct: 91 PGQIAGGEILFTGKDGVQRNLVNVSEAEMRRIRGNDISMIFQEPMTSLNPVYTVGDQIAE 150
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
A+ +H + K+ KE + A D+L+ V IP P +RVN YPH++SGGM+QRV+I + +S P
Sbjct: 151 AVVLH-QGKTRKEAMDVATDMLRFVGIPAPEKRVNEYPHQMSGGMRQRVMIAMALSCKPA 209
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
+LIADEPTTALDVTIQAQILDL+ ++ + +++ ITHNLGVVAE ADRV VMY G++V
Sbjct: 210 LLIADEPTTALDVTIQAQILDLMRNLQREVGMSILFITHNLGVVAEMADRVVVMYGGRVV 269
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPL---------TKIEKLEAIPGTVPNLITPPGGC 295
E G V +IFK P HPYT GLL ++P P ++LEAIPG VPN + P GC
Sbjct: 270 EEGDVIEIFKAPRHPYTMGLLNSIPRPSEDEHAHVPGQPKKRLEAIPGNVPNPLNLPPGC 329
Query: 296 RFHPRCPKVMSICKEKVPELKEIEPGHFVAC 326
F PRC + C + VP L++ GH C
Sbjct: 330 TFEPRCKFAVPQCSQAVPALEDTGGGHMARC 360
>pir||C72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980544|gb|AAD35152.1|AE001692_9 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 331
Score = 323 bits (818), Expect = 2e-87
Identities = 165/327 (50%), Positives = 233/327 (70%), Gaps = 5/327 (1%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E +L++R+L V+F G VKA++ VSFD+ +GE LVGE+GCGKSVT+++I +++
Sbjct: 2 EKVLEIRDLKVYFDLTEGTVKAVDGVSFDIRRGEILGLVGESGCGKSVTAQSILRILPKS 61
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEE--EIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
RIV G+++++R+ G +DL +L E EIR IRG +I+ IFQ+P AS P+YTVG Q+
Sbjct: 62 ARIVNGEIVFHRN-GKTLDLTRLDPEGEEIRDIRGKDISMIFQEPMASFSPVYTVGAQMI 120
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
EA+ +H + S +E ++ V++LK V IP+ + V+ YP ELSGGM QR +I + +S NP
Sbjct: 121 EAILLHENV-SKEEARKRVVEMLKKVKIPNAEKVVDMYPFELSGGMLQRCMIAMAMSLNP 179
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
+L+ADEPTTALDVTIQAQIL L+ +++++Y ++++LITH++GVVA+ ADRVAVMY G I
Sbjct: 180 TLLLADEPTTALDVTIQAQILYLMKELQKEYHSSILLITHDMGVVAQMADRVAVMYLGNI 239
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
VE V ++FKNPLHPYTQ LLR++P + +LE I G VP+ P GCRFH RC K
Sbjct: 240 VETAEVFELFKNPLHPYTQALLRSIPKIGIRKTRLETIKGMVPDPYNLPTGCRFHNRCEK 299
Query: 304 VM-SICKEKVPELKEIEPGHFVACHLY 329
M +C K P E++PGH V C LY
Sbjct: 300 FMKGLCDVKEPPEVEVKPGHKVKCFLY 326
>pir||D72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981012|gb|AAD35586.1|AE001726_20 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 327
Score = 322 bits (817), Expect = 3e-87
Identities = 160/320 (50%), Positives = 232/320 (72%), Gaps = 7/320 (2%)
Query: 11 VRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVE 70
+ NL +FYT G+VKA++ VSF+V +GET +VGE+G GKSVTS +I +L++ G+IV+
Sbjct: 1 MENLKTYFYTEDGVVKAVDGVSFEVREGETLGIVGESGSGKSVTSLSIMRLLDQNGKIVD 60
Query: 71 GQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHG 130
G++++ + LL+LSE E+RKIRG EIA IFQ+P +L+P++T+G QI EA+ +H
Sbjct: 61 GKIIFKGRN-----LLELSENEMRKIRGKEIAMIFQEPMVALNPVFTIGDQIMEAIILHQ 115
Query: 131 KIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADE 190
+ S KE + A+D+L+ V IP+P +RV+ YPH+LSGGM+QR +I + +S P +LIADE
Sbjct: 116 NV-SEKEARKMAIDLLRKVGIPEPEKRVDEYPHQLSGGMRQRAMIAMALSCRPSLLIADE 174
Query: 191 PTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVD 250
PTTALDVTIQAQIL+L+ +++++Y +ILITH++GVVAE +D+VAVMYAGK+VE G V
Sbjct: 175 PTTALDVTIQAQILELMKELQKEYGMAIILITHDMGVVAEMSDKVAVMYAGKVVEYGDVK 234
Query: 251 QIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKV-MSICK 309
IF P HPYT LL ++P + E+L++IPG VP+ + P GC+FHPRC C
Sbjct: 235 TIFTEPKHPYTYALLESIPRIDVEQERLKSIPGNVPDPLNFPPGCKFHPRCEFFEKGKCD 294
Query: 310 EKVPELKEIEPGHFVACHLY 329
+ PEL++++ H V C +
Sbjct: 295 VEEPELEDLDGNHKVRCFFW 314
>sp|Q53193|Y4TR_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TR
>gi|1486422|emb|CAA92400.1| (Z68203) OppD homologue
[Rhizobium sp.] >gi|2182648|gb|AAB91871.1| (AE000098)
Y4tR [Rhizobium sp. NGR234]
Length = 335
Score = 317 bits (803), Expect = 1e-85
Identities = 160/321 (49%), Positives = 226/321 (69%), Gaps = 8/321 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI-ESPG 66
+L VR+L HFY + +A+ V+F V GE +VGE+GCGKSVT+ +I +L+ +
Sbjct: 12 LLDVRDLETHFYGEESVTRALGGVNFHVKSGEMLGIVGESGCGKSVTALSILRLLPKQTA 71
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
+ V G+V++ + LL+LSE ++R++RGN IA IFQDP SL P++TVG QIAEA+
Sbjct: 72 KTVGGEVIFKGRN-----LLELSERQMREVRGNRIAMIFQDPMTSLSPVHTVGRQIAEAV 126
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
++HG++ S E ++KA+++L+ V I DP RR+NNYPHE+SGGM+QR +I + ++ +P +L
Sbjct: 127 QIHGRV-SRAEALEKALEMLRLVRIADPERRLNNYPHEMSGGMRQRAMIAMALACSPELL 185
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQIL L+ +K++ V+ ITH+LGVVAET RV VMYAG+IVE
Sbjct: 186 IADEPTTALDVTIQAQILRLIVDLKDRMGTAVMFITHDLGVVAETCQRVIVMYAGRIVEQ 245
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLT-KIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
+V +F P HPYT+ L+ +VP+ + +L IPG VP+L P GC F RCP +
Sbjct: 246 ASVTDLFARPTHPYTRALMNSVPDRRRGRQSRLPEIPGVVPSLREPLVGCSFAERCPFAI 305
Query: 306 SICKEKVPELKEIEPGHFVAC 326
+C+EK+P L EI+PGH AC
Sbjct: 306 GVCREKMPVLSEIQPGHAAAC 326
>gb|AAF73093.1|AF103793_4 (AF103793) ATPase OppD [Listeria monocytogenes]
Length = 358
Score = 312 bits (791), Expect = 4e-84
Identities = 168/324 (51%), Positives = 226/324 (68%), Gaps = 7/324 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI-ES 64
E +L+V++L + F+TYAG VKAI V+FD+YKGET A+VGE+G GKSVT+++I +L+ E
Sbjct: 2 EKLLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPEG 61
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
I GQ+L+ + +D+ K E++++KIRG +IA IFQDP SL+P T+G QI+E
Sbjct: 62 NSEIKSGQILF-----NGMDIAKAHEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISE 116
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
+ H KI S E + A+ +L+ V I + R+ YPH+ SGGM+QRVVI I ++ NP+
Sbjct: 117 PLIKHQKI-SKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQ 175
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
ILIADEPTTALDVTIQAQILDL+ +++K ++I ITH+LGVVA ADRVAVMY GKIV
Sbjct: 176 ILIADEPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIV 235
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKV 304
EIGTVD+IF NP HPYT GL+ ++P T E+L IPGT P+L+ PP G F R
Sbjct: 236 EIGTVDEIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTPPDLLHPPKGDAFAARNKYA 295
Query: 305 MSICKEKVPELKEIEPGHFVACHL 328
M I E+ P L ++ H+ A L
Sbjct: 296 MQIDLEEEPPLFKVSDTHYAATWL 319
>gb|AAG22037.1|AF305387_4 (AF305387) OppD [Bacillus thuringiensis]
Length = 347
Score = 311 bits (789), Expect = 6e-84
Identities = 165/322 (51%), Positives = 232/322 (71%), Gaps = 7/322 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP-G 66
+L+V++L V F T+AG V+A+ V+FD+ KGET A+VGE+G GKSVTS+A+ LI +P G
Sbjct: 4 LLEVKDLQVSFDTHAGEVQAVRGVTFDLKKGETLAIVGESGSGKSVTSKALMGLIPNPPG 63
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
RI G++++ +G DL KL+E+E++++RG +IA IFQDP SL+P T+G QI E +
Sbjct: 64 RIKNGEIVF---EGR--DLTKLTEKEMQQVRGKDIAMIFQDPMTSLNPTMTIGNQIMEGL 118
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
H + S + + A++++ V IP+P R+ YPH+ SGGM+QRVVI + ++ NP++L
Sbjct: 119 IKHQGM-SKADARKVALELIDLVGIPNPEARLKQYPHQFSGGMRQRVVIAMALACNPKLL 177
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQIL+L+ +++K +A +I ITH+LGVVA ADRVAVMYAGK+VEI
Sbjct: 178 IADEPTTALDVTIQAQILELMKDIQQKTEAAIIFITHDLGVVANVADRVAVMYAGKVVEI 237
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
GTVD+IF NP HPYT GL+ ++P+ E+L AIPGT P+L+ PP G F PR P+ +
Sbjct: 238 GTVDEIFYNPKHPYTWGLIASMPSLDGSEEELYAIPGTPPDLLKPPKGDAFAPRNPQALK 297
Query: 307 ICKEKVPELKEIEPGHFVACHL 328
I E P L ++ H+ A L
Sbjct: 298 IDFEMDPPLFKVSDTHYAATWL 319
>pir||A72452 probable peptide transport ATP-binding protein APE2261 - Aeropyrum
pernix (strain K1) >gi|5105962|dbj|BAA81273.1|
(AP000064) 320aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 320
Score = 309 bits (783), Expect = 3e-83
Identities = 157/319 (49%), Positives = 219/319 (68%), Gaps = 8/319 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L +++L VH+YT GIV+A++ VS V KGE ++VGE+G GKS + +I +LI PGR
Sbjct: 7 VLDIQDLKVHYYTLTGIVRAVDGVSLSVNKGEWISIVGESGSGKSTLALSIPRLIMPPGR 66
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
IV G++LY S VDLL L+ EE+R+ RG EI +FQDP A LDP TVG QIAE++
Sbjct: 67 IVGGRILY-----SGVDLLSLAGEELRRYRGREIGMVFQDPTAYLDPYRTVGSQIAESLL 121
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
HG S E A D L+ V IP R + YPH+LSGG +QRV I ++ P+ILI
Sbjct: 122 EHGLASSGSEAESMAGDALELVGIPRD--RASVYPHQLSGGQRQRVAIAAAVALEPKILI 179
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDV +QA+I+DL+ K++E+ TV+L+TH++G+ AE +DR+AVMYAG++VEIG
Sbjct: 180 ADEPTTALDVVVQAKIMDLMKKLQEERGLTVMLVTHDIGLAAEYSDRIAVMYAGELVEIG 239
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSI 307
+ + NP+HPYT+ L+++VP+P E ++ IPG+ P+L PP GCRFHPRCP +
Sbjct: 240 PAEDVVSNPIHPYTEMLIKSVPDPWEDRE-VKPIPGSPPDLRNPPPGCRFHPRCPLRQPL 298
Query: 308 CKEKVPELKEIEPGHFVAC 326
C P L+ ++ G +C
Sbjct: 299 CTNTRPSLRMVDGGRGHSC 317
>dbj|BAB04069.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 307 bits (778), Expect = 1e-82
Identities = 161/324 (49%), Positives = 217/324 (66%), Gaps = 6/324 (1%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+ +L VR L +FYT +G V ++ VSF+V GET A+VGE+GCGKSVTS +I L+ SP
Sbjct: 4 DTLLSVRELKTYFYTESGAVPSVNGVSFEVKHGETVAVVGESGCGKSVTSLSIMGLVRSP 63
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
G+IV G + R +G DL +SE E RK+RGNE++ IFQ+P SL+PL+T+G Q+ E
Sbjct: 64 GKIVGGDI---RFNGQ--DLTTISEREYRKLRGNELSMIFQEPLTSLNPLFTIGNQLGEV 118
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ H ++ +E QK +++LK V IP + +YPH+LSGGM+QRV+I + ++ P++
Sbjct: 119 ILQHQQVTK-EEAKQKGIEMLKKVGIPRAEQVYRSYPHQLSGGMRQRVMIAMALACEPKL 177
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVTIQAQIL L+ K+ ++ ++LITH+LGVVAE AD V VMYAG++VE
Sbjct: 178 LIADEPTTALDVTIQAQILQLMRKLVKENDTAILLITHDLGVVAEMADTVIVMYAGQVVE 237
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
V +F P HPYTQGLL + PN EKL++I GTVP T P GCRF PRC
Sbjct: 238 QADVFTLFATPAHPYTQGLLASTPNIHASGEKLQSIEGTVPTHETMPKGCRFFPRCLHAT 297
Query: 306 SICKEKVPELKEIEPGHFVACHLY 329
C + P L + G V C L+
Sbjct: 298 EQCVHQEPPLMKTGRGQHVRCWLF 321
>sp|P26905|DPPD_BACSU DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD >gi|98274|pir||S16650
dipeptide transport ATP-binding protein dppD - Bacillus
subtilis >gi|48807|emb|CAA40005.1| (X56678) dciAD
[Bacillus subtilis] >gi|2632016|emb|CAA05575.1|
(AJ002571) DppD [Bacillus subtilis]
>gi|2633649|emb|CAB13152.1| (Z99110) dipeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 335
Score = 307 bits (778), Expect = 1e-82
Identities = 165/324 (50%), Positives = 216/324 (65%), Gaps = 7/324 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES- 64
E +L V+NL V F TY G V+A+ VSFD+YKGETFA+VGE+GCGKSVTS++I L+
Sbjct: 2 EKVLSVQNLHVSFTTYGGTVQAVRGVSFDLYKGETFAIVGESGCGKSVTSQSIMGLLPPY 61
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
++ +G++L+ D L +LS++E+R IRG +I+ IFQDP +L+P TVG Q+ E
Sbjct: 62 SAKVTDGRILFKNKD-----LCRLSDKEMRGIRGADISMIFQDPMTALNPTLTVGDQLGE 116
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
A+ H K+ S K ++ + +L V IPDP R+ YPH+ SGGM+QR+VI + + P
Sbjct: 117 ALLRHKKM-SKKAARKEVLSMLSLVGIPDPGERLKQYPHQFSGGMRQRIVIAMALICEPD 175
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
ILIADEPTTALDVTIQAQIL+L +++ K +VILITH+LGVVA+ ADRVAVMYAGK+
Sbjct: 176 ILIADEPTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGVVAQVADRVAVMYAGKMA 235
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKV 304
EIGT IF P HPYT+GLL +VP +L I GT P+L +PP GC F RCP
Sbjct: 236 EIGTRKDIFYQPQHPYTKGLLGSVPRLDLNGAELTPIDGTPPDLFSPPPGCPFAARCPNR 295
Query: 305 MSICKEKVPELKEIEPGHFVACHL 328
M +C P H V C L
Sbjct: 296 MVVCDRVYPGQTIRSDSHTVNCWL 319
>pir||H72215 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982327|gb|AAD36814.1|AE001813_6 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 324
Score = 303 bits (769), Expect = 1e-81
Identities = 153/321 (47%), Positives = 219/321 (67%), Gaps = 6/321 (1%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L V NL V F+ GIVKA++ +S+ + KGE+ +VGE+G GKSV+ ++ +LI GR
Sbjct: 4 LLNVNNLKVEFHRVEGIVKAVDGISYKLNKGESLGIVGESGSGKSVSVLSLLRLINRNGR 63
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
IV+G+ ++ D LLKL++EE+R IRG +I+ IFQ+P SL+P+ VG Q+ E +
Sbjct: 64 IVDGEAIFLGKD-----LLKLNKEELRNIRGKDISIIFQNPMTSLNPIIRVGIQVMEPII 118
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
H +K+ +E ++A+++L+ V IP+ +R NYP + SGGM+QRV+I + ++ +P++LI
Sbjct: 119 WHRLMKN-EEARERAIELLERVGIPESPKRFLNYPFQFSGGMRQRVMIAMALACHPKLLI 177
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDVTIQAQI++LL ++KE+Y +VI ITH+L V DR+ MYAGKIVE
Sbjct: 178 ADEPTTALDVTIQAQIMELLQELKEEYGMSVIFITHDLSVATNFCDRIITMYAGKIVEEA 237
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSI 307
V++I K PLHPYT+GLL + ++ +KL IPG PN P GC+FHPRC M I
Sbjct: 238 PVEEILKTPLHPYTKGLLNSTLEIGSRGKKLVPIPGNPPNPTKHPSGCKFHPRCSFAMEI 297
Query: 308 CKEKVPELKEIEPGHFVACHL 328
C+ + P L I H VACHL
Sbjct: 298 CQREEPPLVNISENHRVACHL 318
>emb|CAC05750.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 327
Score = 302 bits (766), Expect = 3e-81
Identities = 157/326 (48%), Positives = 223/326 (68%), Gaps = 10/326 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE-SPG 66
+L+VR+L V F+T G+ KA+ VS+ V GET A++GE+G GKSVT++ I +++ PG
Sbjct: 2 LLEVRDLHVEFHTRDGVAKAVNGVSYGVDAGETLAVLGESGSGKSVTAQTIMGILDIPPG 61
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
R+ G++L+ +G DLLKL EEE RK+RG E+A IFQD +SL+P+ TVG Q+AE
Sbjct: 62 RVTAGEILF---EGR--DLLKLKEEERRKVRGAEMAMIFQDALSSLNPVLTVGAQLAEMF 116
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
VH + S K+ KAV+++ V IP RV YPH+ SGGM+QR++I + ++ P+++
Sbjct: 117 TVHRGM-SRKDAHAKAVELMDRVRIPAAKERVRQYPHQFSGGMRQRIMIAMAMALEPKLI 175
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVT+QAQ++DLL +++ + +ILITH+LGVVA+ AD++AVMYAG+IVE
Sbjct: 176 IADEPTTALDVTVQAQVMDLLAELQRELHMGLILITHDLGVVADVADKIAVMYAGRIVET 235
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
V I+K P HPYT+GLL ++P K ++L AI G PNL P GC FHPRCP
Sbjct: 236 APVHDIYKAPAHPYTRGLLESIPRLDQKGQELYAIKGLPPNLTRIPPGCAFHPRCPMAQD 295
Query: 307 ICKEKVPELKEI---EPGHFVACHLY 329
+C+ VP L ++ + ACH +
Sbjct: 296 VCRTDVPPLYDVTESDAERGSACHFW 321
>sp|P24136|OPPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442529|pir||B69669 oligopeptide transport
ATP-binding protein oppD - Bacillus subtilis
>gi|2633500|emb|CAB13003.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 358
Score = 300 bits (761), Expect = 1e-80
Identities = 167/320 (52%), Positives = 223/320 (69%), Gaps = 10/320 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP-G 66
+L+V++L + F TY G V+AI V+F + KGET A+VGE+G GKSVTS+AI +LI P G
Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
G++L+ +G DL+ LSE+E++ +RG EI IFQDP SL+P VG QI E +
Sbjct: 67 YFKRGEILF---EGK--DLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVL 121
Query: 127 EVHGKIKSIKEGIQK-AVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
H KI KE +K AV++L+ V IP P +RVN +PHE SGGM+QRVVI + ++ NP++
Sbjct: 122 FKHEKIS--KEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKL 179
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVTIQAQIL+L+ +++K ++I ITH+LGVVA ADRVAVMYAG+IVE
Sbjct: 180 LIADEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVE 239
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKV 304
GTVD+IF +P HPYT GLL ++P + E+L AIPGT P+L PP G F R
Sbjct: 240 TGTVDEIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYA 299
Query: 305 MSICKEKVPELKEIEPGHFV 324
M I E+ P + ++ H+V
Sbjct: 300 MKIDFEQEPPMFKVSDTHYV 319
>pir||D38447 sporulation initiation protein spo0KD - Bacillus subtilis
>gi|580898|emb|CAA39790.1| (X56347) OppD [Bacillus
subtilis]
Length = 336
Score = 300 bits (761), Expect = 1e-80
Identities = 167/320 (52%), Positives = 223/320 (69%), Gaps = 10/320 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP-G 66
+L+V++L + F TY G V+AI V+F + KGET A+VGE+G GKSVTS+AI +LI P G
Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
G++L+ +G DL+ LSE+E++ +RG EI IFQDP SL+P VG QI E +
Sbjct: 67 YFKRGEILF---EGK--DLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVL 121
Query: 127 EVHGKIKSIKEGIQK-AVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
H KI KE +K AV++L+ V IP P +RVN +PHE SGGM+QRVVI + ++ NP++
Sbjct: 122 FKHEKIS--KEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKL 179
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVTIQAQIL+L+ +++K ++I ITH+LGVVA ADRVAVMYAG+IVE
Sbjct: 180 LIADEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVE 239
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKV 304
GTVD+IF +P HPYT GLL ++P + E+L AIPGT P+L PP G F R
Sbjct: 240 TGTVDEIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYA 299
Query: 305 MSICKEKVPELKEIEPGHFV 324
M I E+ P + ++ H+V
Sbjct: 300 MKIDFEQEPPMFKVSDTHYV 319
>gb|AAA62691.1| (M57689) sporulation protein [Bacillus subtilis]
Length = 358
Score = 300 bits (761), Expect = 1e-80
Identities = 167/320 (52%), Positives = 223/320 (69%), Gaps = 10/320 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP-G 66
+L+V++L + F TY G V+AI V+F + KGET A+VGE+G GKSVTS+AI +LI P G
Sbjct: 7 LLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPPG 66
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
G++L+ +G DL+ LSE+E++ +RG EI IFQDP SL+P VG QI E +
Sbjct: 67 YFKRGEILF---EGK--DLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVL 121
Query: 127 EVHGKIKSIKEGIQK-AVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
H KI KE +K AV++L+ V IP P +RVN +PHE SGGM+QRVVI + ++ NP++
Sbjct: 122 FKHEKIS--KEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKL 179
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVTIQAQIL+L+ +++K ++I ITH+LGVVA ADRVAVMYAG+IVE
Sbjct: 180 LIADEPTTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVE 239
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKV 304
GTVD+IF +P HPYT GLL ++P + E+L AIPGT P+L PP G F R
Sbjct: 240 TGTVDEIFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYA 299
Query: 305 MSICKEKVPELKEIEPGHFV 324
M I E+ P + ++ H+V
Sbjct: 300 MKIDFEQEPPMFKVSDTHYV 319
>gb|AAC64255.1| (AF042861) putative OppD [Treponema denticola]
Length = 330
Score = 300 bits (761), Expect = 1e-80
Identities = 150/323 (46%), Positives = 220/323 (67%), Gaps = 9/323 (2%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L+V+NL +F+T G +KA++ V F + G+T +VGE+G GKS+T+ +I L+E PG
Sbjct: 4 PLLEVKNLHTYFFTNKGTIKAVQGVDFTIEAGKTLGIVGESGSGKSITAFSILNLLEYPG 63
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
+IV+G++ + ++L+ L ++EIRKIRGN+I+ IFQ+P SL+P++ +G Q++E +
Sbjct: 64 KIVQGEINF-----GGINLVNLGKKEIRKIRGNDISMIFQEPMTSLNPVHRIGRQLSEPL 118
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
+H + S KE A+D+L+ V IP+P V NYP +LSGGM+QRV+I + ++ PR+L
Sbjct: 119 ILHQHM-SKKEAWAAAIDLLREVKIPNPENVVYNYPFQLSGGMRQRVMIAMALACKPRLL 177
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQI L+N +K+K+ ++ ITH+LG +AE AD VAVMY G+IVE
Sbjct: 178 IADEPTTALDVTIQAQIFKLMNDLKKKHNTAIMFITHDLGAIAELADDVAVMYTGEIVER 237
Query: 247 GTVDQIFKNPL---HPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
VD IF HPY +GLL ++P ++E L I G+VP+ + P GCRF RC
Sbjct: 238 APVDVIFDRQTQFSHPYKEGLLESIPLLDEEVEYLAQIQGSVPHPLKLPKGCRFSTRCEY 297
Query: 304 VMSICKEKVPELKEIEPGHFVAC 326
C+ + PEL E+E GH + C
Sbjct: 298 ATEKCRNEKPELVEVEEGHLIRC 320
>pir||G71211 probable oligopeptide transport ATP-binding protein appD -
Pyrococcus horikoshii >gi|3258403|dbj|BAA31086.1|
(AP000007) 322aa long hypothetical oligopeptide
transport ATP-binding protein appD [Pyrococcus
horikoshii]
Length = 322
Score = 300 bits (759), Expect = 2e-80
Identities = 157/322 (48%), Positives = 222/322 (68%), Gaps = 9/322 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
IL+V+NL ++++T G VKA++ V+FD+ KGE L GE+GCGKS + + + PGR
Sbjct: 8 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 67
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRK-IRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
IV G + + DG +++ L E+ +R+ IR +I+ IFQ +L+P+YTVGYQ+ E +
Sbjct: 68 IVGGSI---KIDGR--EIVGLPEDVLRREIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 122
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
H K ++ + +A+ L+ V + DP V YPHELSGGMKQRVVI + + P I+
Sbjct: 123 IYH-KGMDREDALDRAMKYLELVGL-DP-EIVYRYPHELSGGMKQRVVIAMALLLEPDIV 179
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDV +QAQI++L+ ++K+K ++I ITH+L ++AE +DRVAVMYAGK+VEI
Sbjct: 180 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDRVAVMYAGKLVEI 239
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
G ++I+ P HPYTQ LL A+P +EKLE IPG+ PNLI PP GCRFHPRCP M
Sbjct: 240 GPSEKIYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLINPPSGCRFHPRCPYAMD 299
Query: 307 ICKEKVPELKEIEPGHFVACHL 328
CKE+ P++ E++ H+ AC L
Sbjct: 300 KCKEEEPKMVEVDKDHYAACWL 321
>dbj|BAB07365.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 329
Score = 299 bits (758), Expect = 3e-80
Identities = 153/327 (46%), Positives = 225/327 (68%), Gaps = 7/327 (2%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+P+ +L++ L HF+T G V A++ VS +++GE +VGE+GCGKSVTS +I QL+
Sbjct: 1 MPDVVLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVP 60
Query: 64 SP-GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
+P G+I+ G V Y++ + DL+++S + +++IRGN+IA IFQ+P SL+PL+T+G Q+
Sbjct: 61 NPPGKIMSGHV-YFKGE----DLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQL 115
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
EA+ H K+ +E ++AV +L+ V IP + YPH+LSGGM+QRV+I + + +
Sbjct: 116 IEAIRNHRKMTK-QEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCD 174
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P++LIADEPTTALDVTIQAQILDL+ + E + ++LITH+LGVVAE +RV VMYAG+
Sbjct: 175 PKVLIADEPTTALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQ 234
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCP 302
+VE G V I K+P HPYT+GLL+++P + ++L +IPG VP T GCRF RC
Sbjct: 235 VVEEGDVRMILKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVPKPGTVGHGCRFAARCE 294
Query: 303 KVMSICKEKVPELKEIEPGHFVACHLY 329
CK P+L+++ GH C LY
Sbjct: 295 VAFERCKTTAPQLQQVATGHQCRCFLY 321
>pir||G75026 oligopeptide transport ATP-binding protein appd. PAB1196 -
Pyrococcus abyssi (strain Orsay)
>gi|5459167|emb|CAB50653.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPD. [Pyrococcus abyssi]
Length = 319
Score = 299 bits (757), Expect = 3e-80
Identities = 154/322 (47%), Positives = 222/322 (68%), Gaps = 9/322 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
IL+V+NL ++++T G VKA++ V+FD+ KGE L GE+GCGKS + + + PGR
Sbjct: 5 ILEVKNLKMYYFTSRGPVKAVDDVTFDLEKGEVLGLAGESGCGKSSIGFTLMGMPQPPGR 64
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRK-IRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
IV G + + DG +++ L E+ +RK IR +I+ IFQ +L+P+YTVGYQ+ E +
Sbjct: 65 IVSGSI---KIDGR--EIVGLPEDVLRKEIRWQKISMIFQGAMNALNPVYTVGYQMIEPL 119
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
H + S ++ + +A+ L+ V + DP V YPHELSGGMKQRVVI + P I+
Sbjct: 120 IYHRGM-SREDALDRAMKYLELVGL-DP-EIVYRYPHELSGGMKQRVVIATALILEPDIV 176
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDV +QAQI++L+ ++K+K ++I ITH+L ++AE +D++A+MYAGKIVEI
Sbjct: 177 IADEPTTALDVVVQAQIINLMKRLKKKLGLSMIFITHDLSILAEISDKIAIMYAGKIVEI 236
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
G ++++ P HPYTQ LL A+P +EKLE IPG+ PNL+ PP GCRFHPRCP M
Sbjct: 237 GPSEKVYYEPAHPYTQKLLAAIPRLHEDVEKLEFIPGSPPNLLNPPSGCRFHPRCPYAMD 296
Query: 307 ICKEKVPELKEIEPGHFVACHL 328
CKE+ P++ E++ H+ AC L
Sbjct: 297 RCKEEEPKMVEVDKDHYAACWL 318
>sp|P42064|APPD_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
>gi|2119773|pir||I40543 oligopeptide transport
ATP-binding protein appD - Bacillus subtilis
>gi|677943|gb|AAA62356.1| (U20909) AppD [Bacillus
subtilis] >gi|2633490|emb|CAB12993.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 328
Score = 298 bits (754), Expect = 8e-80
Identities = 157/326 (48%), Positives = 216/326 (66%), Gaps = 13/326 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L+V NL +F+ + A++ V F + KGET ALVGE+G GKS+TS +I L++S G
Sbjct: 4 LLEVNNLKTYFFRKKEPIPAVDGVDFHISKGETVALVGESGSGKSITSLSIMGLVQSSG- 62
Query: 68 IVEGQVLYYRDDGSVV----DLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
G+++ DGS+ DL +E + KIRGNE++ IFQ+P SL+P+ T+G QI
Sbjct: 63 ---GKIM----DGSIKLEDKDLTSFTENDYCKIRGNEVSMIFQEPMTSLNPVLTIGEQIT 115
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
E + H +K KE Q+AV++L+ V + + YPH LSGGM+QRV+I I +S NP
Sbjct: 116 EVLIYHKNMKK-KEARQRAVELLQMVGFSRAEQIMKEYPHRLSGGMRQRVMIAIALSCNP 174
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
++LIADEPTTALDVTIQAQ+L+L+ + +K+ +++LITH+LGVV+E ADRV VMY G++
Sbjct: 175 KLLIADEPTTALDVTIQAQVLELMKDLCQKFNTSILLITHDLGVVSEAADRVIVMYCGQV 234
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
VE TVD +F PLHPYT+GLL ++P +I+KL AI G+VP P GCRF PRCPK
Sbjct: 235 VENATVDDLFLEPLHPYTEGLLTSIPVIDGEIDKLNAIKGSVPTPDNLPPGCRFAPRCPK 294
Query: 304 VMSICKEKVPELKEIEPGHFVACHLY 329
M C P L + G V C LY
Sbjct: 295 AMDKCWTNQPSLLTHKSGRTVRCFLY 320
>pir||D72720 probable oligopeptide transport ATP-binding protein oppD APE0301 -
Aeropyrum pernix (strain K1) >gi|5103940|dbj|BAA79256.1|
(AP000059) 282aa long hypothetical oligopeptide
transport ATP-binding protein oppD [Aeropyrum pernix]
Length = 282
Score = 293 bits (743), Expect = 2e-78
Identities = 143/285 (50%), Positives = 201/285 (70%), Gaps = 6/285 (2%)
Query: 44 VGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAY 103
+GE+GCGKS +R+I +++ S I +G ++ G+ VDL++LSE+E+ KIRG ++
Sbjct: 1 MGESGCGKSTLARSIARILPSNAVIEKGSIILNLGSGNTVDLVRLSEDELVKIRGKIVSM 60
Query: 104 IFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPH 163
IFQDP A+L P++ V Q+ + V G+ + +++ Q +ILK +++P P + YPH
Sbjct: 61 IFQDPSAALSPVHKVKKQVTD--HVSGEKRRVEKIAQ---EILKKLMMPAPHMILEKYPH 115
Query: 164 ELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITH 223
ELSGGMKQR+VI + PRI+IADEPTTALDVT+QAQIL +L++++E+ + T+ILITH
Sbjct: 116 ELSGGMKQRIVIAASLITRPRIIIADEPTTALDVTVQAQILKMLSRLREELETTIILITH 175
Query: 224 NLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPG 283
NL V AE ADR+AVMYAG +VE+ V +F+ PLHPYT+GLL+++P P E++E I G
Sbjct: 176 NLAVAAEIADRIAVMYAGHVVEVADVFSLFERPLHPYTKGLLKSIPKPHVD-EEIEPIRG 234
Query: 284 TVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGHFVACHL 328
P+L PP GCRFHPRCP VM +C P L+E PG VACHL
Sbjct: 235 EPPSLADPPPGCRFHPRCPYVMDVCMRIKPRLEERAPGRLVACHL 279
>sp|P37314|DPPD_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|2125993|pir||S61404 dipeptide transport protein dppD
- Escherichia coli >gi|349228|gb|AAA23705.1| (L08399)
peripheral membrane protein [Escherichia coli]
>gi|466680|gb|AAB18519.1| (U00039) dppD [Escherichia
coli] >gi|1789963|gb|AAC76566.1| (AE000431) putative
ATP-binding component of dipeptide transport system
[Escherichia coli K12]
Length = 327
Score = 293 bits (743), Expect = 2e-78
Identities = 152/321 (47%), Positives = 214/321 (66%), Gaps = 8/321 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L V L+VHF + +A++++S+ V +GE +VGE+G GKSV+S AI LI+ PGR
Sbjct: 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGR 62
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
++ ++ + D L ++SE+E R + G E+A IFQDP SL+P YTVG+QI EA++
Sbjct: 63 VMAEKLEFNGQD-----LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIK 117
Query: 128 VH-GKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
VH G KS + Q+A+D+L V IPDPA R++ YPH+LSGGM QRV+I + I+ P++L
Sbjct: 118 VHQGGNKSTRR--QRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLL 175
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQI++LL ++++K ++LITH+L +VAE A ++ VMYAG++VE
Sbjct: 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
G IF P HPYTQ LLRA+P E+L ++PG VP P GC +PRCP
Sbjct: 236 GDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATD 295
Query: 307 ICKEKVPELKEIEPGHFVACH 327
C+ + P L + G CH
Sbjct: 296 RCRAEEPALNMLADGRQSKCH 316
>gi|11499359 dipeptide ABC transporter, ATP-binding protein (dppD)
[Archaeoglobus fulgidus] >gi|7445611|pir||A69471
dipeptide ABC transporter, ATP-binding protein (dppD)
homolog - Archaeoglobus fulgidus
>gi|2648781|gb|AAB89480.1| (AE000980) dipeptide ABC
transporter, ATP-binding protein (dppD) [Archaeoglobus
fulgidus]
Length = 313
Score = 287 bits (727), Expect = 1e-76
Identities = 153/323 (47%), Positives = 225/323 (69%), Gaps = 14/323 (4%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L + NLT F T G+V+A++ VS V KGE ++VGE+GCGKS + ++ +LI+ PG
Sbjct: 3 LLDIENLTTIFRTRRGVVRAVDNVSMSVEKGEFISIVGESGCGKSTLAHSVMRLIDYPGE 62
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
I G++++ DG VDLL L +EE+R+IRG++I +FQDP SLDPL +G QI+E +
Sbjct: 63 ISGGKIIF---DG--VDLLSLGDEEMREIRGSKIGMVFQDPMTSLDPLEKIGDQISETIM 117
Query: 128 VHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
H + KE Q A ++L+ V L P+ RV++YPH+LSGG +QRV+I + IS NP++L
Sbjct: 118 EHMDVTK-KEAWQMAREMLEKVGLQPE---RVDSYPHQLSGGQRQRVMIAMAISLNPKLL 173
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDV +Q +I+DLL MK + +A V+LITH+ + AE +DR+AVMYAG +VE+
Sbjct: 174 IADEPTTALDVIVQEKIMDLLEDMKREGRA-VMLITHDFALAAERSDRIAVMYAGWLVEL 232
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
G +++ PLHPYT+GL+++VP+ + ++++ +PG P+LI PP GCRF PRC +
Sbjct: 233 GKAEKLTNEPLHPYTKGLIQSVPD-VWMDKEIKPLPGFPPDLINPPEGCRFRPRCSEASK 291
Query: 307 ICKEKVPELKEIEPGHFVACHLY 329
C ++ PE E++ G V C LY
Sbjct: 292 RCMKEPPEF-EVD-GRVVKCWLY 312
>pir||T34759 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402246|emb|CAA20182.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 365
Score = 287 bits (727), Expect = 1e-76
Identities = 155/336 (46%), Positives = 222/336 (65%), Gaps = 20/336 (5%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P L+VR+L VHF T G+VK+++ +SF + KG+T +VGE+G GKSVTS I L +
Sbjct: 21 PTAFLEVRDLKVHFPTDDGLVKSVDGLSFQLEKGKTLGIVGESGSGKSVTSLGIMGL-HT 79
Query: 65 PGRI------VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
G+ + G++ DG+ +LL + +RK+RG E+A IFQDP ++L P YT+
Sbjct: 80 AGQYGKRKARISGEIWL---DGT--ELLSADPDHVRKLRGREMAMIFQDPLSALHPYYTI 134
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
G QI EA +H K+ K ++AV++L V IP P +RV++YPHE SGGM+QR +I +
Sbjct: 135 GQQIVEAYRIHHKVDK-KTAKRRAVEMLDRVGIPQPDKRVDSYPHEFSGGMRQRAMIAMS 193
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ NNP +LIADEPTTALDVT+QAQILDL+ +++++ + VI+ITH+LGVVAE AD + VM
Sbjct: 194 LVNNPELLIADEPTTALDVTVQAQILDLIRDLQKEFGSAVIVITHDLGVVAELADDLLVM 253
Query: 239 YAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRF 297
Y G+ VE G +++F P HPYT GLL ++P + E+L + G+ P+LI P GC F
Sbjct: 254 YGGRCVERGPAEKVFYEPRHPYTWGLLGSMPRLDRDQQERLIPVKGSPPSLINLPSGCAF 313
Query: 298 HPRCPKVMSICKEKV-----PELKEIEPGHFVACHL 328
+PRCP + K+ V PEL E+ H+ ACH+
Sbjct: 314 NPRCP-YADVPKDDVTRTVRPELTEVGSKHWAACHM 348
>dbj|BAB07359.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 340
Score = 287 bits (727), Expect = 1e-76
Identities = 158/323 (48%), Positives = 204/323 (62%), Gaps = 7/323 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+LQ+RNLT F A++ V+ +V K E A+VGE+G GKS + I L
Sbjct: 6 LLQIRNLTTAFQIKDDFYAAVDNVTLNVNKNEVLAIVGESGSGKSALANTIMGLHNPERT 65
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+EG++ + ++ L+KL ++ KIRG++++ IFQDP +L+PL +G QI EA+
Sbjct: 66 KIEGEINFKGEN-----LVKLPVSKLNKIRGDKLSMIFQDPLTALNPLMIIGEQIGEALL 120
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
+H + E +K +D+L V IP P YPHELSGGM+QRV+I I+ P LI
Sbjct: 121 LHRSLTKA-ERKKKVIDLLNLVGIPRPESTYEQYPHELSGGMRQRVMIAAAIACEPEFLI 179
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDVTIQAQILDL+ +KEK A +ILITH+LGVVAE ADRVAVMYAG+IVEI
Sbjct: 180 ADEPTTALDVTIQAQILDLIRDLKEKIHAGIILITHDLGVVAEMADRVAVMYAGQIVEIA 239
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLIT-PPGGCRFHPRCPKVMS 306
V +F+ PLHPYT+ LL +VP+ EKL I G VP L P GCRF R P +
Sbjct: 240 DVFTLFERPLHPYTRSLLNSVPSESNDQEKLHVIQGIVPALQNLPRKGCRFKDRIPWLSE 299
Query: 307 ICKEKVPELKEIEPGHFVACHLY 329
E PEL E+EPGHFV C Y
Sbjct: 300 SAHEDHPELHEVEPGHFVRCTCY 322
>pir||T45280 probable ABC transporter intracellular ATPase chain bldkD
[imported] - Streptomyces coelicolor
>gi|1532204|gb|AAB09557.1| (U68036) putative ABC
transporter intracellular ATPase subunit BldkD
[Streptomyces coelicolor A3(2)]
Length = 353
Score = 286 bits (724), Expect = 3e-76
Identities = 151/325 (46%), Positives = 214/325 (65%), Gaps = 8/325 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+ L VR+L VHF T G+VKA++ +SFD+ +G+T +VGE+G GKSVT+ A+ L +
Sbjct: 17 DAFLSVRDLKVHFSTEGGVVKAVDGLSFDLERGKTLGIVGESGSGKSVTNLAVLGLHDRR 76
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
++G + DG +L SE+++ K+RG ++A IFQD +L P YTVG QIAE
Sbjct: 77 RTAIDGSITL---DGQ--ELTDASEKQLEKLRGKKMAMIFQDALTALSPYYTVGRQIAEP 131
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
H S K+ A+D+L+ V IP P +RV++YPH+ SGG+ QR +I + +S NP +
Sbjct: 132 FMKHNGA-SKKDARCGAIDLLQKVGIPHPQKRVDDYPHQFSGGIGQRAMIAMALSCNPDL 190
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVT+QAQILDLL +++++ + +I+ITH+LGVV AD + VMYAG+ VE
Sbjct: 191 LIADEPTTALDVTVQAQILDLLKDLQQEFASAIIMITHDLGVVGNMADDIMVMYAGRAVE 250
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKI-EKLEAIPGTVPNLITPPGGCRFHPRCPKV 304
GTV ++ K+P HPYT GLL ++PN + + E L IPG+ P+L+ PP GC FHPRC
Sbjct: 251 RGTVREVLKSPQHPYTWGLLSSMPNLTSDVDEPLMPIPGSPPSLMNPPSGCAFHPRCGFT 310
Query: 305 MSICKEKVP-ELKEIEPGHFVACHL 328
+ E+ E + G ACHL
Sbjct: 311 DLVSGERCSGERPTLPHGRAAACHL 335
>gb|AAG20449.1| (AE005117) oligopeptide ABC transporter; OppD2 [Halobacterium sp.
NRC-1]
Length = 363
Score = 283 bits (717), Expect = 2e-75
Identities = 147/326 (45%), Positives = 211/326 (64%), Gaps = 7/326 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E IL +RNL F T ++A++ +S + GET +VGE+G GKSVT+R+I L+++P
Sbjct: 16 ESILSIRNLQTVFRTDHEHIRAVDGISLSISPGETLGIVGESGSGKSVTARSIMGLVDAP 75
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
G ++ + + DG+ +L +LS ++ +++RG+ + IFQDP SL+P+YTVG QI EA
Sbjct: 76 GEVLPESSIVF--DGT--ELTELSADQYQEVRGSGVGMIFQDPLKSLNPVYTVGNQIREA 131
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ ++ I +E A+D+L+ V IPDP RR++ YP+E SGGM+QR VI + ++ +P +
Sbjct: 132 LRINRGITG-QEATDVAIDLLEDVAIPDPERRLDEYPNEFSGGMRQRAVIAMMLACDPDV 190
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LI DEPTTALDVTIQAQI++LL ++ + ++ ITH++GV+AE +DRV VMYAG+ VE
Sbjct: 191 LICDEPTTALDVTIQAQIVELLQDIQAERDLAILFITHDMGVIAEISDRVNVMYAGEFVE 250
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
V+++F NP HPYTQGLL A+P E+L I G VP P CRF PRCPK
Sbjct: 251 KAPVEELFANPKHPYTQGLLDAIPGTSVDDERLNTIEGDVPTPNQPATDCRFAPRCPKAF 310
Query: 306 SICKEKVPELKEIEP--GHFVACHLY 329
C E P + H AC LY
Sbjct: 311 EDCTEVHPTHVSVSDTHDHSTACLLY 336
>sp|P45095|DPPD_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPD
>gi|1074009|pir||F64188 dipeptide transport ATP-binding
protein dppD - Haemophilus influenzae (strain Rd KW20)
>gi|972897|gb|AAA95974.1| (U17295) DppD [Haemophilus
influenzae] >gi|1574112|gb|AAC22838.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Haemophilus influenzae Rd]
Length = 330
Score = 283 bits (716), Expect = 2e-75
Identities = 152/322 (47%), Positives = 214/322 (66%), Gaps = 11/322 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L V+ L+VHF KA++++S+ V +GE +VGE+G GKSV+S AI LI+ PGR
Sbjct: 3 LLDVKELSVHFGDKKTPFKAVDRISYQVAQGEVLGIVGESGSGKSVSSLAIMGLIDHPGR 62
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
V + L + + DLL L + R++ G ++A IFQDP SL+P YTVG+QI EA++
Sbjct: 63 -VSAESLQFEN----TDLLTLESKAKRQLIGADVAMIFQDPMTSLNPAYTVGFQIMEALK 117
Query: 128 VH--GKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
H G K+ K+ + +++LK V IPDP R++ YPH+LSGGM QRV+I + I+ P++
Sbjct: 118 THEGGTKKARKD---RTLELLKLVGIPDPESRIDVYPHQLSGGMSQRVMIAMAIACRPKL 174
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVTIQAQI++LL ++++K ++ILITH+L +VAE A+R+ VMYAG+IVE
Sbjct: 175 LIADEPTTALDVTIQAQIMELLLELQKKECMSLILITHDLALVAEAAERIIVMYAGQIVE 234
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
GT IF+ P HPYTQ LLR++P +LE++ G VP P GC +PRCP
Sbjct: 235 EGTAKDIFREPKHPYTQALLRSLPEFAEGKSRLESLQGVVPGKYDRPTGCLLNPRCPYAT 294
Query: 306 SICKEKVPELKEIEPGHFVACH 327
C++ P+L I V CH
Sbjct: 295 EYCRQVEPQLHHI-GSRKVKCH 315
>pir||E72536 probable oligopeptide transport ATP-binding protein APE1578 -
Aeropyrum pernix (strain K1) >gi|5105265|dbj|BAA80578.1|
(AP000062) 324aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 324
Score = 281 bits (711), Expect = 9e-75
Identities = 148/324 (45%), Positives = 207/324 (63%), Gaps = 9/324 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+ +L V +L +FYT GIVKA++ VSF + +GE + GE+G GKS + +I L+ P
Sbjct: 3 QELLVVEDLKTYFYTLRGIVKAVDGVSFTLRRGEVLGIAGESGSGKSTLAWSILGLVPPP 62
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIR-KIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
GRIV G+++ DG +D+ +SE E+R K+R +++ +FQ L P+YTVG QI E
Sbjct: 63 GRIVGGRIMI---DG--MDVTSMSEAELRRKVRWKKVSMVFQGAMNVLTPVYTVGRQIEE 117
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
+++H + E Q+ ++L+SV + + YPHELSGG KQRVVI + ++ P
Sbjct: 118 VLQIHRGVGR-HEARQRVYELLESVGLHRSI--ADRYPHELSGGQKQRVVIAMALALEPD 174
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
I+IADEPTTALDV +QAQIL+LL K+ + ++ILITH+L V+AE A+ V +MY GKI
Sbjct: 175 IVIADEPTTALDVVVQAQILNLLKKLAWEKNLSIILITHDLSVIAELAETVMIMYGGKIA 234
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKV 304
E G D +F P HPYTQ LL+A+P I++L IPG+ P+L PP GCRFHPRCPK
Sbjct: 235 EYGPSDAVFTKPQHPYTQALLKAIPKLRGPIDRLAYIPGSPPDLRNPPPGCRFHPRCPKA 294
Query: 305 MSICKEKVPELKEIEPGHFVACHL 328
C + P L + GH AC L
Sbjct: 295 FDRCSREEPPLFRVGDGHLSACWL 318
>pir||D72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981700|gb|AAD36228.1|AE001772_7 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 323
Score = 280 bits (710), Expect = 1e-74
Identities = 149/326 (45%), Positives = 213/326 (64%), Gaps = 17/326 (5%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L+++N++V + T V A+E VSF + KGET LVGE+GCGKS +I +L+ +
Sbjct: 3 VLELKNVSVRYKTGEKTVNAVENVSFHLEKGETLGLVGESGCGKSTLGFSIMRLLPKGTK 62
Query: 68 IVEGQVLYYRDDGSV----VDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
I DGS+ +D+ LS+EE+R+IRG+++A IFQDP SL+P+ +
Sbjct: 63 I----------DGSIKIEGIDISSLSDEEMRQIRGSKVAMIFQDPMTSLNPILRIEDHFV 112
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
E + H S ++ + A L+ V I R+ +YP + SGGM+QRV+I + I NP
Sbjct: 113 EMILTHRPELSKEDARELAAKALEDVGIN--RNRLKDYPFQFSGGMRQRVMIALSIVLNP 170
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
+LIADEPTT+LDV +QAQI++LL K+ ++++ +ILITH++G+VAE ADR+ VMYAG +
Sbjct: 171 AVLIADEPTTSLDVIVQAQIMELLEKLTKEHRTAMILITHDMGLVAEAADRIGVMYAGHL 230
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
VE+ + ++IF NPLHPYT GLLR++PN ++L IPG+ P+L PP GCRF PRC K
Sbjct: 231 VELASKERIFTNPLHPYTVGLLRSIPNTDVNDKELRYIPGSPPDLSNPPEGCRFAPRCEK 290
Query: 304 VMSICKEKVPELKEIEPGHFVACHLY 329
M IC EK P EI+ G V C LY
Sbjct: 291 AMKICWEKEPPEFEID-GTRVKCWLY 315
>pir||E82242 oligopeptide ABC transporter, ATP-binding protein VC1094 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655563|gb|AAF94253.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 324
Score = 269 bits (681), Expect = 3e-71
Identities = 140/308 (45%), Positives = 201/308 (64%), Gaps = 7/308 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L V++L V F T GIV A+ ++F + +GET +VGE+G GKS T AI L+ G+
Sbjct: 4 LLDVKDLRVEFSTQDGIVTAVNDLNFSLKQGETLGIVGESGSGKSQTVFAIMGLLAKNGK 63
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
I + +G ++L L E E+ K+R +IA IFQDP SL+P V Q+ E +
Sbjct: 64 ITGSA----KFEGK--EILNLPERELNKVRAEQIAMIFQDPMTSLNPYMKVSDQLMEVLM 117
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
+H K E +++V +L++V IP+ +R+ YPHE SGGM+QRV+I + + P++LI
Sbjct: 118 LH-KGMGKAEAFEESVRMLEAVKIPEARKRITMYPHEFSGGMRQRVMIAMALLCRPKLLI 176
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDVT+QAQI++LLN++K ++ +I+ITH+LGVVA + D+V VMYAG+ +E G
Sbjct: 177 ADEPTTALDVTVQAQIMELLNELKREFNTAIIMITHDLGVVAGSCDKVLVMYAGRTMEYG 236
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSI 307
+V+ IF NP HPY +GLL A+P T+ E L IPG PNL+ P GC + RC +V
Sbjct: 237 SVNDIFYNPSHPYAEGLLSAIPRLDTEGEVLPTIPGNPPNLLRLPVGCPYQERCHRVTDR 296
Query: 308 CKEKVPEL 315
CK + P L
Sbjct: 297 CKREAPIL 304
>dbj|BAA14778.1| (D90763) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli] >gi|1805527|dbj|BAA16041.1| (D90852)
Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 337
Score = 268 bits (679), Expect = 5e-71
Identities = 142/321 (44%), Positives = 200/321 (62%), Gaps = 8/321 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+ +L V++L V F T G V A+ ++F + GET +VGE+G GKS T+ A+ L+ +
Sbjct: 17 DALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 76
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
GRI R+ +L L E E+ K+R +I+ IFQDP SL+P VG Q+ E
Sbjct: 77 GRIGGSATFNGRE------ILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 130
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ +H K S E +++V +L +V +P+ +R+ YPHE SGGM+QRV+I + + P++
Sbjct: 131 LMLH-KNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL 189
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVT+QAQI+ LLN++K ++ +I+ITH+L VVA D+V VMYAG+ +E
Sbjct: 190 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTME 249
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
G +F P+HPY+ GLL AVP + E + IPG PNL+ P GC F PRCP M
Sbjct: 250 YGNARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAM 309
Query: 306 SICKEKVPELKEIEPGHFVAC 326
IC P L+E PG AC
Sbjct: 310 EIC-SSAPPLEEFTPGRLRAC 329
>sp|P76027|OPPD_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|7442530|pir||A64872 oligopeptide transport
ATP-binding protein oppD - Escherichia coli
>gi|1787499|gb|AAC74328.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 337
Score = 268 bits (679), Expect = 5e-71
Identities = 142/321 (44%), Positives = 200/321 (62%), Gaps = 8/321 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+ +L V++L V F T G V A+ ++F + GET +VGE+G GKS T+ A+ L+ +
Sbjct: 17 DALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAN 76
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
GRI R+ +L L E E+ K+R +I+ IFQDP SL+P VG Q+ E
Sbjct: 77 GRIGGSATFNGRE------ILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 130
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ +H K S E +++V +L +V +P+ +R+ YPHE SGGM+QRV+I + + P++
Sbjct: 131 LMLH-KNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL 189
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVT+QAQI+ LLN++K ++ +I+ITH+L VVA D+V VMYAG+ +E
Sbjct: 190 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTME 249
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
G +F P+HPY+ GLL AVP + E + IPG PNL+ P GC F PRCP M
Sbjct: 250 YGNARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAM 309
Query: 306 SICKEKVPELKEIEPGHFVAC 326
IC P L+E PG AC
Sbjct: 310 EIC-SSAPPLEEFTPGRLRAC 329
>dbj|BAB07364.1| (AP001519) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 322
Score = 268 bits (677), Expect = 8e-71
Identities = 149/334 (44%), Positives = 216/334 (64%), Gaps = 25/334 (7%)
Query: 6 EPILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
+P+L+V+NLT F G V+A++ +SF VY+GE +VGE+GCGKS T +AI
Sbjct: 3 KPLLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKAI 62
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+LIE G+V + + ++ LSE ++RK R ++ IFQDP+ASL+P +T+
Sbjct: 63 LRLIEPSS----GEVYF-----AGTEITALSEGDMRK-RRRDMQIIFQDPYASLNPRHTI 112
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGI 177
I E + VH +I + KE +++ ++L++V L D A R YPH+ SGG +QR+ I
Sbjct: 113 EKIIREPLIVH-QIGTKKEQLERVEELLETVGLSSDHATR---YPHQFSGGQRQRIGIAR 168
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ +P+++I DEP +ALDV++Q+QIL+L+ +KE + T I I H+L VV +DRVAV
Sbjct: 169 ALAVHPKLVICDEPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAV 228
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRA--VPNPLTKIEKLEAIPGTVPNLITPPGGC 295
MY G++VE+ T DQ+F+NP HPYT+ LL A VP+P EK+ + G VP+ PP GC
Sbjct: 229 MYLGRMVEMATKDQLFENPKHPYTRALLSAVPVPDPDAAKEKI-LLKGDVPSPSNPPEGC 287
Query: 296 RFHPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
FH RCP M +CK K P L E E GH+VACHLY
Sbjct: 288 AFHTRCPDCMDVCKIKRPSLHEKEKGHYVACHLY 321
>sp|P04285|OPPD_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|47805|emb|CAA29042.1| (X05491) Opp D (AA1-335)
[Salmonella typhimurium]
Length = 335
Score = 266 bits (673), Expect = 2e-70
Identities = 142/327 (43%), Positives = 203/327 (61%), Gaps = 11/327 (3%)
Query: 3 KVPEP---ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
+ P+P +L+V +L V F T G V A+ ++F + GET +VGE+G GKS T+ A+
Sbjct: 9 QAPQPANVLLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALM 68
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
L+ + GRI R+ +L L E E+ +R +I+ IFQDP SL+P VG
Sbjct: 69 GLLATNGRIGGSATFNGRE------ILNLPERELNTLRAEQISMIFQDPMTSLNPYMRVG 122
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
Q+ E + +H K S E +++V +L +V +P+ +R+ YPHE SGGM+QRV+I + +
Sbjct: 123 EQLMEVLMLH-KGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL 181
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
P++LIADEPTTALDVT+QAQI+ LLN++K ++ +I+ITH+LGVVA D+V VMY
Sbjct: 182 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 241
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHP 299
AG+ +E G +F P+HPY+ GLL AVP ++ ++ IPG PNL+ P GC F P
Sbjct: 242 AGRTMEYGKARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQP 301
Query: 300 RCPKVMSICKEKVPELKEIEPGHFVAC 326
RCP M IC P L+ PG AC
Sbjct: 302 RCPHAMEIC-NNAPPLEAFSPGRLRAC 327
>pir||E83082 probable ATP-binding component of ABC transporter PA4505 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9950745|gb|AAG07893.1|AE004864_5 (AE004864) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 324
Score = 265 bits (670), Expect = 5e-70
Identities = 143/314 (45%), Positives = 199/314 (62%), Gaps = 7/314 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L ++NL+V F V ++ + V KGE A+VGE+G GKSVT A+ LI++PG
Sbjct: 3 LLDIKNLSVRFGDTTA-VPVVDGLDLSVDKGEVLAIVGESGSGKSVTMMALMGLIDAPGW 61
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+ + R DG D+L L + R+I G ++A +FQDP +L+P YTVGYQI E +
Sbjct: 62 VSADHL---RFDGH--DMLTLKGRQRRRIVGKDMAMVFQDPMTALNPSYTVGYQIEEVLR 116
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
+H ++ K Q+A+++L+ V IP A R++ YPH+LSGGM QRV I + I+ P++LI
Sbjct: 117 LHLGLRG-KALRQRALELLERVEIPAAASRLDAYPHQLSGGMSQRVAIAMAIAAEPKLLI 175
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDVTIQAQI++LL ++ +ILITH+L VVAETA RV VMYAG+ VEIG
Sbjct: 176 ADEPTTALDVTIQAQIMELLLNLQRDQDMALILITHDLAVVAETAQRVCVMYAGEAVEIG 235
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSI 307
V +F P HPYT+ L++A+P +L +PG VP P GC PRCP
Sbjct: 236 GVPALFDRPTHPYTEALIKAIPEHCAGEARLATLPGIVPGRYDRPRGCLLSPRCPYAQEH 295
Query: 308 CKEKVPELKEIEPG 321
C+++ P L+ E G
Sbjct: 296 CRQERPALETHERG 309
>pir||G72283 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981745|gb|AAD36269.1|AE001776_5 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 264 bits (667), Expect = 1e-69
Identities = 139/327 (42%), Positives = 207/327 (62%), Gaps = 9/327 (2%)
Query: 6 EPILQVRNLTVHF----YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
E ++ +NL ++ + +VKA++ VS D+ E + + GE+GCGKS +A+ L
Sbjct: 2 ETLISGKNLKAYYVLDLWGSKKVVKAVDNVSLDILPNEIYGIAGESGCGKSTLLKALLAL 61
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
++ P R+++G++LY +G ++ L E IRK+R + I+YI Q L+P+ V
Sbjct: 62 LDPPLRLMDGELLY-NIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRVRDT 120
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
E + H K K KE + AV LK + +P+ R +N +PH+LSGGM+QRV I +
Sbjct: 121 FIEILSSHVK-KQTKEFLDLAVQHLKDLGLPE--RVLNMFPHQLSGGMRQRVTIALATVL 177
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
PR++ ADEPTTALDV Q ++ L+ K++ K TV+L+TH++GV A+ R+A+MYAG
Sbjct: 178 KPRVIFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTRMAIMYAG 237
Query: 242 KIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRC 301
KIVE G +IFKNPLHPYT+ L++++P + + IPG+ P+L+ PP GCRFHPRC
Sbjct: 238 KIVEEGPTLEIFKNPLHPYTRYLIQSLP-AIGDKKLRSGIPGSPPSLVAPPPGCRFHPRC 296
Query: 302 PKVMSICKEKVPELKEIEPGHFVACHL 328
P C+E+ P LKEI+PGH VAC L
Sbjct: 297 PHASQRCREEEPLLKEIKPGHKVACFL 323
>pir||G71014 probable dipeptide transport ATP-binding protein dppF - Pyrococcus
horikoshii >gi|3257836|dbj|BAA30519.1| (AP000006) 329aa
long hypothetical dipeptide transport ATP-binding
protein dppF [Pyrococcus horikoshii]
Length = 329
Score = 263 bits (664), Expect = 3e-69
Identities = 142/347 (40%), Positives = 211/347 (59%), Gaps = 39/347 (11%)
Query: 1 MRKVPEPILQVRNLTVHF-----YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTS 55
M +PEP+L+V NL +F G VKA++ VSF++YKGETF LVGE+GCGK+ T
Sbjct: 1 MMFMPEPVLKVENLKKYFPVRGLLRTVGWVKAVDGVSFEIYKGETFGLVGESGCGKTTTG 60
Query: 56 RAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAY-------IFQDP 108
R I +LIE +G++++ D + K++GNE+ + +FQDP
Sbjct: 61 RTILRLIEP----TDGRIIFMGKD-------------VTKLKGNELKWFRRKAQIMFQDP 103
Query: 109 HASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGG 168
++SLDP TV I E + HG + + + + +L+SV + + + YPHE SGG
Sbjct: 104 YSSLDPRQTVFQIIMEPVRFHGI--QVDDPEEFVIKLLESVGLNE--MHLYRYPHEFSGG 159
Query: 169 MKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVV 228
+QR+ + ++ P ++ DEPT+ALDV++QA IL+ L +++EK+ T + I+H+LGVV
Sbjct: 160 QRQRIALARLLALKPEFIVLDEPTSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVV 219
Query: 229 AETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKI-----EKLEAIPG 283
+DR+ VMY GK+VE+G D++F+NPLHPYTQ L A+P P I +K + G
Sbjct: 220 KYMSDRIGVMYLGKLVEVGPADKVFENPLHPYTQMLFSAIPIPDPDIAREMKKKRMKVTG 279
Query: 284 TVPNLITPPGGCRFHPRCPKVMS-ICKEKVPELKEIEPGHFVACHLY 329
P+ + PP GCRFHPRCP + +C +K P L E+E H+VAC LY
Sbjct: 280 EPPSPVNPPKGCRFHPRCPYAKAGLCDKKEPPLVEVEKDHYVACWLY 326
>gb|AAK42736.1| Dipeptide ABC transporter ATP binding protein (dppD-3) [Sulfolobus
solfataricus]
Length = 324
Score = 263 bits (664), Expect = 3e-69
Identities = 134/326 (41%), Positives = 212/326 (64%), Gaps = 12/326 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+LQ+RNL V++ T VK + V+ DV KGE +VGE+G GKS AI++++ R
Sbjct: 6 VLQIRNLNVYYNTLISWVKVLSDVNLDVEKGEIVGVVGESGSGKSTLGHAISRILPPNAR 65
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
I +G ++ DG V+L KL + E++K RG + IFQ+P SL+P+ VG Q+ EA++
Sbjct: 66 I-QGDIIV---DG--VNLAKLKDSELQKYRGTWVFMIFQNPLNSLNPVKKVGSQLLEAVK 119
Query: 128 VH----GKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+ GK + ++ +++LK + +PDP ++ YPH+LSGG QR+VI + + P
Sbjct: 120 IRYQREGKKAEEESLMRDVIEVLKDLRLPDPYSIIDRYPHQLSGGQVQRIVISMALLLKP 179
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
++LIADEPT+ALDVTIQAQ+++L ++ ++ +++ ITH++ + +DR+ VMYAG+I
Sbjct: 180 KLLIADEPTSALDVTIQAQVVNLFKQLNKEINTSILFITHDISLAYVVSDRIVVMYAGRI 239
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
+E G V+++ K+P+HPYTQGL+ ++P+ K +KL AIPG P+ P GC+F RC K
Sbjct: 240 MEDGKVEEVLKSPMHPYTQGLVASIPSG-DKNQKLTAIPGNPPSFFALPTGCKFSNRCSK 298
Query: 304 VMSICKEKVPELKEIEPGHFVACHLY 329
V IC++K P + E + G + C LY
Sbjct: 299 VFDICRKKEPSIIE-KNGRKIRCWLY 323
>pir||B72424 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980543|gb|AAD35151.1|AE001692_8 (AE001692)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 338
Score = 262 bits (662), Expect = 5e-69
Identities = 143/315 (45%), Positives = 207/315 (65%), Gaps = 15/315 (4%)
Query: 18 FYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYR 77
F G V+A++ VSFD+ +GET ALVGE+GCGK+ T+++I + I+ +G V+ +
Sbjct: 20 FKKVVGYVRAVDDVSFDIKQGETLALVGESGCGKTTTAKSILRAIDP----TDGDVILHL 75
Query: 78 DDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKE 137
D G V++ KLS +E++ R + IFQ+P+ SL+P V + E + V+G K KE
Sbjct: 76 D-GKDVNIAKLSRDELKPYR-RYMQMIFQNPYTSLNPRMKVKEIVGEPLLVNGIAKG-KE 132
Query: 138 GIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALD 196
+ ++LK+V L P+ R YPH SGG +QR+VI I+ P++++ DEPT+ALD
Sbjct: 133 LEDRVAELLKAVGLRPEYMIR---YPHAFSGGQRQRIVIARAIALRPKLVVCDEPTSALD 189
Query: 197 VTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNP 256
V+I+AQIL+LL ++E++ T + ITH+L VV +DRVAVMY GKIVE+ + ++IF+NP
Sbjct: 190 VSIRAQILNLLMDLQEEFALTYLFITHDLSVVEHISDRVAVMYLGKIVELSSTEEIFENP 249
Query: 257 LHPYTQGLLRAVPNPLTKI-EKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPEL 315
HPYT+ LLR+VP P + E+L I G VPN PP GC FHPRCP SICKE+ PE
Sbjct: 250 KHPYTETLLRSVPKPDPDLREELVPIEGEVPNPANPPSGCYFHPRCPYAKSICKEEYPEF 309
Query: 316 KEI---EPGHFVACH 327
+ + + H+VACH
Sbjct: 310 RNLGTEDNPHYVACH 324
>emb|CAA61525.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 356
Score = 261 bits (661), Expect = 6e-69
Identities = 146/323 (45%), Positives = 202/323 (62%), Gaps = 5/323 (1%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
M K IL +++ V F ++ AI VS ++ +GE A VGE+G GKSV ++ T
Sbjct: 1 MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELVEGEVLAFVGESGSGKSVLTKTFTG 60
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
++ES GRI G ++Y + + DL + +E KIRG++IA IFQDP SL P+ T+G
Sbjct: 61 MLESNGRIANGSIVYRGQE--LTDLK--TNKEWAKIRGSKIATIFQDPMTSLSPIKTIGS 116
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
QI E + H K+ K + A+D + V IP+ +R +YP E SGGM+QR+VI I ++
Sbjct: 117 QITEVIIKHQKVSHAKAK-EMALDYMNKVGIPNAKKRFEDYPFEYSGGMRQRIVIAIALA 175
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
P ILI DEPTTALDVTIQAQI++LL ++ +Y T+I ITH+LGVVA AD+VAVMYA
Sbjct: 176 CRPDILICDEPTTALDVTIQAQIVELLKSLQREYHFTIIFITHDLGVVASIADKVAVMYA 235
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
G+IVE GTV++IF +P HPYT LL ++P + +L AIPGT P+L +P G F R
Sbjct: 236 GEIVEFGTVEEIFYDPRHPYTWSLLSSLPQLADESGELYAIPGTPPSLYSPIIGDAFALR 295
Query: 301 CPKVMSICKEKVPELKEIEPGHF 323
M + EK P + H+
Sbjct: 296 SEYAMVLDFEKAPPAINVSETHW 318
>pir||B72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980562|gb|AAD35168.1|AE001694_4 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 332
Score = 261 bits (661), Expect = 6e-69
Identities = 135/325 (41%), Positives = 208/325 (63%), Gaps = 8/325 (2%)
Query: 8 ILQVRNLTVHF----YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+L+ NL ++ + +VKA++ V+ + + E + + GE+GCGKS RA+ IE
Sbjct: 3 VLRTENLKSYYILDIFGKKRVVKAVDDVNISIMENEIYGIAGESGCGKSTLLRALFAAIE 62
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
P RIV G+VLY R++G VD+ LS+EE R++R + I+Y+ Q + L+P+ +
Sbjct: 63 PPQRIVGGKVLY-RENGKEVDVYSLSDEERRRLRWSFISYVPQGSMSVLNPVVKIKETFK 121
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+ +E H K+ +E + A + +K + +P +N YPH+LSGGM+QRV I + +P
Sbjct: 122 DFIESHTTGKTKEEAYEMAKEHIKELGLP--IEILNAYPHQLSGGMRQRVTIALATVLSP 179
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
+++IADEPTTALDV Q ++ LL +++ + T+IL+TH++GV A DR+A+MYAGKI
Sbjct: 180 KVIIADEPTTALDVVTQRGVVQLLKEIQSSRQNTIILVTHDMGVHANVTDRIAIMYAGKI 239
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
+E G ++IF+NP+HPYT+ L+ ++P K + E+ PG+ P+L P GC FHPRCP
Sbjct: 240 IEEGKTEEIFENPMHPYTKYLIYSLPKFGDK-GRRESAPGSPPSLADLPPGCSFHPRCPH 298
Query: 304 VMSICKEKVPELKEIEPGHFVACHL 328
CK++VP LKE PGH VAC L
Sbjct: 299 AFDRCKKEVPPLKEYLPGHRVACWL 323
>sp|P18765|AMIE_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIE
>gi|98018|pir||S11152 oligopeptide transport protein
amiE - Streptococcus pneumoniae
>gi|47346|emb|CAA35216.1| (X17337) AmiE protein
[Streptococcus pneumoniae]
Length = 355
Score = 260 bits (658), Expect = 1e-68
Identities = 147/320 (45%), Positives = 198/320 (60%), Gaps = 6/320 (1%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
M K IL R++ V F ++ AI VS ++ +GE ALVGE+G GKSV ++
Sbjct: 1 MTKEKNVILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFRG 60
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
++E GRI EG + Y D + + S ++ +IRG +IA IFQDP SLDP+ T+G
Sbjct: 61 MLEENGRIAEGSIDYRGQDLTALS----SHKDWEQIRGAKIATIFQDPMTSLDPIKTIGS 116
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
QI E + H + K+ KE + A+D + V IPD RR N YP + SGGM+QR+VI I ++
Sbjct: 117 QITEVIVKH-QGKTAKEAKELAIDYMNKVGIPDADRRFNEYPFQYSGGMRQRIVIAIALA 175
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
P +LI DEPTTALDVTIQAQI+DLL ++ +Y T I ITH+LGVVA AD+VAVMYA
Sbjct: 176 CRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYA 235
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
G+IVE GTV+++F +P HPYT LL ++P L +IPGT P+L T G F R
Sbjct: 236 GEIVEYGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALR 295
Query: 301 CPKVMSI-CKEKVPELKEIE 319
M I ++K P+ E
Sbjct: 296 SDYAMQIDFEQKAPQFSVSE 315
>pir||QREBOT oligopeptide transport protein oppD - Salmonella typhimurium
Length = 335
Score = 260 bits (658), Expect = 1e-68
Identities = 140/327 (42%), Positives = 200/327 (60%), Gaps = 11/327 (3%)
Query: 3 KVPEP---ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
+ P+P +L+V +L V F T G V A+ ++F + GET +VGE+G GKS + +
Sbjct: 9 QAPQPANVLLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQSRLRLM 68
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
L+ + GRI R+ +L L E E+ R +I+ IFQDP SL+P VG
Sbjct: 69 GLLATNGRIGGSATFNGRE------ILNLPERELNTRRAEQISMIFQDPMTSLNPYMRVG 122
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
Q+ E + +H K S E +++V +L +V +P+ +R+ YPHE SGGM+QRV+I + +
Sbjct: 123 EQLMEVLMLH-KGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMAL 181
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
P++LIADEPTTALDVT+QAQI+ LLN++K ++ +I+ITH+LGVVA D+V VMY
Sbjct: 182 LCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMY 241
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHP 299
AG+ +E G +F P+HPY+ GLL AVP ++ ++ IPG PNL+ P GC F P
Sbjct: 242 AGRTMEYGKARDVFYQPVHPYSIGLLNAVPRLDSEGAEMLTIPGNPPNLLRLPKGCPFQP 301
Query: 300 RCPKVMSICKEKVPELKEIEPGHFVAC 326
RCP M IC P L+ PG AC
Sbjct: 302 RCPHAMEIC-NNAPPLEAFSPGRLRAC 327
>sp|P45052|OPPD_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075084|pir||C64184 oligopeptide transport
ATP-binding protein oppD - Haemophilus influenzae
(strain Rd KW20) >gi|1574676|gb|AAC22775.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppD)
[Haemophilus influenzae Rd]
Length = 323
Score = 259 bits (654), Expect = 4e-68
Identities = 139/322 (43%), Positives = 201/322 (62%), Gaps = 8/322 (2%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L V+NL V F T G+V A+ ++F + G T +VGE+G GKS T+ A+ L+ + G
Sbjct: 3 PLLDVKNLYVRFKTPDGVVTAVNDLNFTLNAGSTLGIVGESGSGKSQTAFALMGLLAANG 62
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
VEG ++ +G +L+ L E+ KIR +I+ IFQDP SL+P +G Q+ E +
Sbjct: 63 E-VEGSAIF---EGK--ELVNLPNAELNKIRAEQISMIFQDPMTSLNPYMKIGEQLMEVL 116
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
++H K + ++V +L +V +P+ +R+ YPHE SGGM+QRV+I + + P++L
Sbjct: 117 QLH-KGYDKQTAFAESVKMLDAVKMPEAKKRMGMYPHEFSGGMRQRVMIAMALLCRPKLL 175
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVT+QAQI+ LLN++K ++ +I+ITH+LGVVA D+V VMYAG+ +E
Sbjct: 176 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDQVMVMYAGRTMEY 235
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
GT +QIF +P HPY+ GL+ A+P E L IPG PNL+ P GC F PRC
Sbjct: 236 GTAEQIFYHPTHPYSIGLMDAIPRLDGNEEHLVTIPGNPPNLLHLPKGCPFSPRCQFATE 295
Query: 307 ICKEKVPELKEIEPGHFVACHL 328
C + P+L G C L
Sbjct: 296 QC-QIAPKLTTFNHGQLRNCWL 316
>pir||B72300 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981604|gb|AAD36138.1|AE001766_4 (AE001766)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 341
Score = 257 bits (649), Expect = 2e-67
Identities = 142/334 (42%), Positives = 213/334 (63%), Gaps = 22/334 (6%)
Query: 8 ILQVRNLTVHF--------YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
+L+V+NL +F G +KA++ +SF + +GET LVGE+GCGK+ T++ I
Sbjct: 3 LLEVKNLKKYFPIIKRGFRRKVVGYLKAVDGISFHIEEGETLGLVGESGCGKTTTAKLIM 62
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNE-IAYIFQDPHASLDPLYTV 118
+ IE EG+++ D G VD+ KLSE+E+R+ + IFQDP++SL+P TV
Sbjct: 63 RGIEP----TEGEIVLNMD-GEKVDITKLSEKELREKGVRRFLQMIFQDPYSSLNPRMTV 117
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGI 177
IAE + V+G IK +E D+L++V L P+ +R YPH SGG +QR+ I
Sbjct: 118 RDIIAEPLVVNGVIKGKEEIDAIVSDLLRAVGLRPEYMQR---YPHAFSGGQRQRIAIAR 174
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
I+ P++++ DEPT+ALDV++QAQI++LL ++++Y T + I+H+LGVV +RVAV
Sbjct: 175 AIALKPKLVLCDEPTSALDVSVQAQIINLLKDLQKEYNLTYLFISHDLGVVEHITNRVAV 234
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEA-IPGTVPNLITPPGGCR 296
MY G+IVE+ +++F +P HPYT+ LL AVP P K ++ +A + G VP+ PP GC
Sbjct: 235 MYVGRIVELAETEELFSSPKHPYTEALLSAVPKPDPKRKRKKAQLTGEVPDPSNPPSGCY 294
Query: 297 FHPRCPKVMSICKEKVPELKEI---EPGHFVACH 327
FHPRCP +ICKE P+L+ + + H VACH
Sbjct: 295 FHPRCPYAKAICKEVYPDLRNVGTDQNPHLVACH 328
>sp|Q11040|YC81_MYCTU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN RV1281C
>gi|7445626|pir||A70756 probable ABC-type peptide
transport protein - Mycobacterium tuberculosis (strain
H37RV) >gi|1480305|emb|CAB00901.1| (Z77137) oppD
[Mycobacterium tuberculosis]
Length = 612
Score = 256 bits (648), Expect = 2e-67
Identities = 147/321 (45%), Positives = 200/321 (61%), Gaps = 7/321 (2%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L+V +L V F T V A+ +S+ V GE A+VGE+G GKS + A+ L+
Sbjct: 3 PLLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYA 62
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
+ V G V R G+ +LL L++ + + RG I +FQDP ++L P+YTVG QIAEA+
Sbjct: 63 Q-VRGSV---RLQGT--ELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAI 116
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
EVH K ++AV++L V I P RR +PHELSGG +QRVVI I I+N+P +L
Sbjct: 117 EVHQPRVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLL 176
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
I DEPTTALDVT+QAQILD+L ++ A V++ITH+LGVVAE ADR VMYAG++VE
Sbjct: 177 ICDEPTTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVES 236
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
V+ ++++ PYT GLL +VP + +L IPG P+L GC F PRCP V+
Sbjct: 237 AGVNDLYRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVI 296
Query: 306 SICKEKVPELKEIEPGHFVAC 326
C PEL ++ H AC
Sbjct: 297 DECLTAEPELLDVATDHRAAC 317
Score = 151 bits (378), Expect = 1e-35
Identities = 97/250 (38%), Positives = 145/250 (57%), Gaps = 16/250 (6%)
Query: 23 GIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSV 82
G V+A++ +S ++ +G T +VGE+G GKS T I +L +E VL
Sbjct: 372 GEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQSGSIE--VLG------- 422
Query: 83 VDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKEG-IQK 141
D+ L E R +R +I +FQDP ASLDP V IAE ++ +G K+ + +
Sbjct: 423 TDVATLGTAERRSLR-RDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFGKNETHARVAE 481
Query: 142 AVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQA 201
+DI+ + D +R YP E SGG KQR+ I ++ P+IL DEP +ALDV+IQA
Sbjct: 482 LLDIV-GLRHGDASR----YPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQA 536
Query: 202 QILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYT 261
I++LL ++E++ + + ++H+L VV A +VAVM AG +VE G +++F NP H YT
Sbjct: 537 GIINLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYT 596
Query: 262 QGLLRAVPNP 271
+ LL AVP P
Sbjct: 597 RRLLGAVPQP 606
>dbj|BAA94702.1| (AB026907) dipeptide transporter DppD homolog [Ochrobactrum
anthropi]
Length = 334
Score = 256 bits (647), Expect = 3e-67
Identities = 136/321 (42%), Positives = 195/321 (60%), Gaps = 5/321 (1%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L V NL V F T G V A VS + GET +VGE+G GKSV RA+ L+ SP
Sbjct: 5 PLLSVDNLNVTFSTPRGNVVANNGVSLQIAGGETLGIVGESGSGKSVLCRALLGLLPSPP 64
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
+ L + ++L L+ E+R +RG EI+ +FQ+P +SL+P++ +G QI+E +
Sbjct: 65 ATIRADRLVFAGR----NMLSLTAAEMRAVRGQEISMVFQNPMSSLNPVWPIGDQISEGL 120
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
VH I + + A+ L+ V IP P RV++YPH+ SGGM QR VI + + P++L
Sbjct: 121 RVHRGIGNA-QARSAAIAALRRVGIPSPEIRVDDYPHQWSGGMAQRAVIAMAMIGEPKLL 179
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
+ADEPTTALDVTIQ QIL LL +++ + ++L++H++ V++ET D VAVMYAG +VE
Sbjct: 180 LADEPTTALDVTIQDQILSLLMQLQRETGMAIVLVSHDMSVISETCDNVAVMYAGGVVET 239
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
G IF+ P HPYT GLL ++P + +KL +IPG P+L GC F RC +
Sbjct: 240 GRTTDIFRTPSHPYTAGLLNSIPPIKGRADKLASIPGQPPDLARLGPGCPFFERCSVASA 299
Query: 307 ICKEKVPELKEIEPGHFVACH 327
C+ + LK + G ACH
Sbjct: 300 ECQTRPVALKRLASGQQTACH 320
>pir||C72289 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981699|gb|AAD36227.1|AE001772_6 (AE001772)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 325
Score = 255 bits (644), Expect = 6e-67
Identities = 139/333 (41%), Positives = 201/333 (59%), Gaps = 22/333 (6%)
Query: 8 ILQVRNLTVHFYTYAG-----------IVKAIEKVSFDVYKGETFALVGETGCGKSVTSR 56
+++V+NL +F G VKA++ V+F + +G++ LVGE+G GK+ T R
Sbjct: 3 LIEVQNLKKYFPVKQGPIDVLLRKPRKFVKAVDGVNFQIDEGKSLGLVGESGSGKTTTGR 62
Query: 57 AITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY 116
I +L E +G++++ DG D+ KLS+EE+RK+R E+ IFQDP ASL+P
Sbjct: 63 VILRLEEP----TDGKIIF---DGR--DITKLSKEEMRKLR-KEMQIIFQDPMASLNPYM 112
Query: 117 TVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIG 176
VG I A+E+HG I + +++L+ V + YP ELSGG +QRVVI
Sbjct: 113 RVGKAIEHALEIHG-IGDRSSRKEMVLEMLRRVNLEPAEDIYRRYPRELSGGQRQRVVIA 171
Query: 177 IGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVA 236
+ PR+++ADE LDV++++Q+L LL ++++++ T++ ITH+L D +A
Sbjct: 172 RALILKPRLVVADEAVAMLDVSVRSQLLRLLQELRKEFNLTMLFITHDLATTKYVCDEIA 231
Query: 237 VMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCR 296
VMY GKIVEIG + I+ NP HPYTQ L+ AVP P K +K G PN I P GCR
Sbjct: 232 VMYLGKIVEIGDFEDIYLNPKHPYTQALISAVPEPSLKKKKKFIPEGETPNPIDVPSGCR 291
Query: 297 FHPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
FHPRCP M IC ++ P+LK +E H VACHLY
Sbjct: 292 FHPRCPYRMDICMKEEPQLKAVEENHKVACHLY 324
>sp|P42065|APPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPF
>gi|2119774|pir||I40544 oligopeptide transport
ATP-binding protein appF - Bacillus subtilis
>gi|677944|gb|AAA62357.1| (U20909) AppF [Bacillus
subtilis] >gi|2633491|emb|CAB12994.1| (Z99110)
oligopeptide ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 329
Score = 254 bits (642), Expect = 1e-66
Identities = 142/336 (42%), Positives = 206/336 (61%), Gaps = 26/336 (7%)
Query: 6 EPILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
E IL++R++ +F +G+ VKA++ VSF + KGET +VGE+GCGKS R +
Sbjct: 7 ETILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTM 66
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+L + EGQ+L+ D S LSEE++RK I +FQDP ASL+P T+
Sbjct: 67 IRLYKP----TEGQILFKGQDIS-----NLSEEKLRKSVRKNIQMVFQDPFASLNPRKTL 117
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGI 177
I E H + +++E +K ++L V L P A R YPHE SGG +QR+ I
Sbjct: 118 RSIIKEPFNTHN-MYTMRERNEKVEELLARVGLHPSFAGR---YPHEFSGGQRQRIGIAR 173
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ NP ++IADEP +ALDV+IQ Q+++L+ +++E++ T + I+H+L VV +DRV V
Sbjct: 174 ALTLNPELIIADEPVSALDVSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGV 233
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVP----NPLTKIEKLEAIPGTVPNLITPPG 293
MY GK++E+ +++ NPLHPYTQ LL +VP K E++ + G +P+ PP
Sbjct: 234 MYLGKMMELTGKHELYDNPLHPYTQALLSSVPVTRKRGSVKRERI-VLKGELPSPANPPK 292
Query: 294 GCRFHPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
GC FH RCP ICKE++PE KE P HFVACHLY
Sbjct: 293 GCVFHTRCPVAKPICKEQIPEFKEAAPSHFVACHLY 328
>pir||H72366 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981043|gb|AAD35615.1|AE001728_16 (AE001728)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 389
Score = 254 bits (642), Expect = 1e-66
Identities = 148/364 (40%), Positives = 210/364 (57%), Gaps = 59/364 (16%)
Query: 23 GIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE-SPGRIV--EGQVLYY--- 76
G VKA++ +SF V KG+TFALVGE+GCGK+ T++ I +L + GR+V YY
Sbjct: 26 GYVKAVDDISFSVEKGKTFALVGESGCGKTTTAKTILRLTNPTAGRVVIDGDDTTYYFMK 85
Query: 77 -RD---------------------DGSVVDLL---------------KLSEEEIRKIRGN 99
RD +VD+L K SEE+ +I +
Sbjct: 86 RRDAENYLETTYVDIFREMREKLSPDQIVDVLEDVDKKYAEIFFKEAKESEEKFYQILLD 145
Query: 100 EI-----------AYIFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKS 148
+I +FQDP +SL+P TVG + E + HG K+ +E + A D+LKS
Sbjct: 146 DIDEKRMKFRRKIQIVFQDPMSSLNPRMTVGDILTEPILFHGLAKTREEAVDMAKDLLKS 205
Query: 149 VLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLN 208
V + + + YPH+ SGG +QR+ I IS NP I+I DEPT +LDV++QAQ+++L
Sbjct: 206 VGLKE--YHLERYPHQFSGGQRQRIAIARAISINPEIVILDEPTASLDVSVQAQVINLFL 263
Query: 209 KMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAV 268
K++E+ T + I+H+LG+V + V +MY G+IVE+G D+IF NPLHPYTQ LL AV
Sbjct: 264 KLQEEKGFTYLFISHDLGLVRFISHEVGIMYLGRIVEMGNTDEIFDNPLHPYTQALLSAV 323
Query: 269 PNPLTKIEKLE---AIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGHFVA 325
P P K+E+ + G VP+ I P GC FHPRCP M +C+++ P +KEI PGH+VA
Sbjct: 324 PVPDPKVERTRKRIILRGGVPSPINRPTGCFFHPRCPYKMPVCEKEYPVMKEISPGHWVA 383
Query: 326 CHLY 329
CHL+
Sbjct: 384 CHLH 387
>pir||F72049 peptide ABC transporter, ATP-binding protein CP0065 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376983|gb|AAD18821.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189002|gb|AAF37954.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979054|dbj|BAA98889.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 253 bits (639), Expect = 2e-66
Identities = 133/324 (41%), Positives = 201/324 (61%), Gaps = 7/324 (2%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
PILQ+ +L++ ++ +SF + +G+T A++GE+G GKSV++ AI +L+ P
Sbjct: 5 PILQIEDLSITLAKQRQQYPIVQSLSFTINEGQTLAIIGESGSGKSVSAHAILRLLPCPP 64
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
V GQV + + LL S +KI G EI+ IFQ+P ASL+P++T+ Q E +
Sbjct: 65 FSVSGQVNFQGHN-----LLTASRSIQKKIIGTEISMIFQNPQASLNPVFTIEQQFREII 119
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
H + + + +K + L+ DP +N YPH+LSGGM QR+ I + + +P++L
Sbjct: 120 HTHLALTA-EVAKEKMLYALEETGFHDPRLCLNLYPHQLSGGMLQRICIAMALLCSPKLL 178
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDV++Q QIL LL +++K ++++ITHN+GVVAETAD V V+YAG++VE
Sbjct: 179 IADEPTTALDVSVQYQILQLLKTLQKKTGMSLLIITHNMGVVAETADDVLVLYAGRMVEC 238
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
Q+F NP HPYT+ LL + P+ ++ IPG P+ P GCR+HPRC K++
Sbjct: 239 APAVQMFHNPSHPYTRDLLASRPSLQPQQLGSFNPIPGQPPHYTAFPSGCRYHPRCSKIL 298
Query: 306 SICKEKVPELKEIEPGHFVACHLY 329
+ C + PE+ + GH V C LY
Sbjct: 299 NRCSAEAPEIYPVREGHKVRCWLY 322
>gb|AAK41513.1| Oligo/dipeptide transport, ATP binding protein (dppD-1) [Sulfolobus
solfataricus]
Length = 316
Score = 252 bits (637), Expect = 4e-66
Identities = 136/323 (42%), Positives = 202/323 (62%), Gaps = 13/323 (4%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L+VRNL V+FYT GIVKA++ V+ + KGE L GE+G GKS AI +L+ PG+
Sbjct: 6 LLEVRNLKVYFYTKRGIVKAVDGVNLYLDKGEIVGLAGESGSGKSTIGYAIMRLVPFPGK 65
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRK-IRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
I G++L+ ++ +LKL EE RK R +IA +FQ + P++ + QI E +
Sbjct: 66 IESGEILFKGEN-----ILKLDEEAFRKNYRWKKIAMVFQGSMSGFTPVFKIKDQIIEVL 120
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
+HG +E I++ ++ DP + YPHELSGG KQR I + ++ NP +L
Sbjct: 121 RIHGWNGDYEERIKELFKMVNM----DP-QLAEKYPHELSGGQKQRAFIAMALALNPEVL 175
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDV +Q IL+LL K++++ ++I ITH+L +++E +DR +YAGK++E
Sbjct: 176 IADEPTTALDVMVQEHILNLLKKLRKELNLSIIFITHDLALLSEISDRDYTLYAGKVMES 235
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
G + IFK P HPYT L+ ++ L K + ++ IPG +P+L +PP GCRF+ RCP
Sbjct: 236 GPSEVIFKKPRHPYTSLLIESIAT-LDK-DIIKGIPGAMPDLSSPPLGCRFNTRCPFARD 293
Query: 307 ICKEKVPELKEIEPGHFVACHLY 329
IC ++ P++K G VAC LY
Sbjct: 294 ICFKEEPKMKTFSDGDEVACWLY 316
>pir||G75117 dipeptide abc transporter, ATP-binding protein (dppf) PAB1875 -
Pyrococcus abyssi (strain Orsay)
>gi|5458167|emb|CAB49656.1| (AJ248285) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 326
Score = 252 bits (636), Expect = 5e-66
Identities = 137/335 (40%), Positives = 208/335 (61%), Gaps = 25/335 (7%)
Query: 6 EPILQVRNLTVHF-----YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
E +L+V NL +F + G VKA++ VSF++ +GETF LVGE+GCGK+ T R I +
Sbjct: 3 ETVLKVENLKKYFPIRGLFRTIGWVKAVDGVSFEIKRGETFGLVGESGCGKTTTGRTILR 62
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
LIE +G++++ D + KL EE++ R + +FQDP++SLDP TV
Sbjct: 63 LIEP----TDGKIIFMGKD-----VTKLKGEELKWFR-RKAQIMFQDPYSSLDPRQTVFQ 112
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
I E ++ HG + + + + +L+SV + + + YPHE SGG +QR+ + ++
Sbjct: 113 IIMEPVKFHGI--QVDDPEEFVIRLLESVGLNE--MHLYRYPHEFSGGQRQRIALARLLA 168
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
P ++ DEPT+ALDV++QA IL+ L +++EK+ T + I+H+LGVV +DR+ VMY
Sbjct: 169 LKPEFIVLDEPTSALDVSVQANILNTLKELQEKHGFTYLFISHDLGVVKYMSDRIGVMYL 228
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKI-----EKLEAIPGTVPNLITPPGGC 295
GK+VE+G D+IF+NPLHPYTQ L A+P P + +K + G P+ I PP GC
Sbjct: 229 GKLVEVGPADRIFENPLHPYTQMLFSAIPIPDPDLAREMKKKRMKVTGEPPSPINPPKGC 288
Query: 296 RFHPRCPKVMS-ICKEKVPELKEIEPGHFVACHLY 329
RFHPRCP + +C ++ P + E+E H+VAC LY
Sbjct: 289 RFHPRCPYAKAGLCDKEEPPMVEVEKDHYVACWLY 323
>gb|AAC24218.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 326
Score = 249 bits (629), Expect = 4e-65
Identities = 127/328 (38%), Positives = 209/328 (63%), Gaps = 11/328 (3%)
Query: 6 EPILQVRNLTVH----FYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
E +++ +NL + F+ ++A++ VS ++ GE + + GE+GCGKS + +
Sbjct: 2 ETLVEGKNLKAYYVLEFWGKKRTIRAVDNVSLKIFSGEIYGIAGESGCGKSTLLKTLLAN 61
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
+E P R+ G++ Y+ D V+++ L EEE R+++ I+YI Q L+P+ +
Sbjct: 62 LEPPLRLFGGELNYWLDS-KPVNVVSLKEEERRRLKWRFISYIPQGSMHVLNPVKRIRDT 120
Query: 122 IAEAMEVHGKIKSIKEG-IQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
E ++ H ++ KE ++ A++ LK++ +P +R ++ +PH+LSGGM+QRV I +
Sbjct: 121 FMEILKSH--VRRQKETFLEMAIEHLKALGLP--SRVLDMFPHQLSGGMRQRVTIALATL 176
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
PRI++ADEPTTALDV Q ++ L+ K++++ K T++L+TH++G+ A+ R+A+MYA
Sbjct: 177 LKPRIILADEPTTALDVVAQRAVIQLIKKIQKELKNTIVLVTHDMGIHAQVTTRMAIMYA 236
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
GKIVE G +IFK PLHPYT+ L++++P K + E IPG+ P+L++PP GCRFHPR
Sbjct: 237 GKIVEEGPTLEIFKEPLHPYTRYLIQSLPRVGDK-QLREGIPGSPPSLVSPPSGCRFHPR 295
Query: 301 CPKVMSICKEKVPELKEIEPGHFVACHL 328
CP C+E+ P E+ PGH AC L
Sbjct: 296 CPHATQRCEEEEPVFLEVNPGHRAACFL 323
>dbj|BAB03746.1| (AP001507) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 338
Score = 249 bits (629), Expect = 4e-65
Identities = 136/332 (40%), Positives = 210/332 (62%), Gaps = 26/332 (7%)
Query: 8 ILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
+L+V L +F GI VKA++ VSF +Y+GET ++VGE+GCGKS T RAI +
Sbjct: 5 LLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGRAILR 64
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
L E +G++ + +D LL L++ E+RK R ++ IFQDP+AS++P T+
Sbjct: 65 LDEP----TDGKIEFQGED-----LLSLNKREMRKKR-KDLQIIFQDPYASINPRQTIRQ 114
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
+ EAME+ + K G ++ +++ +V + + + + +PHE SGG +QR+ I +S
Sbjct: 115 VLEEAMEIQKVVPRDKRG-ERIRELMDTVGLG--SHQADRFPHEFSGGQRQRIGIARALS 171
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
NP++++ DE +ALDV+IQAQ+++LL +++ ++K T + I+H+LGVV +DRV VMY
Sbjct: 172 VNPKLIVCDEAVSALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYL 231
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRA--VPNPLTKIEKLEAIPGTVPNLITPPGGCRFH 298
G+IVEI +F+NP HPYT+ LL A VP+P K E++ + G VP+ I PP GCRFH
Sbjct: 232 GRIVEIADKTSLFENPQHPYTKALLSAIPVPDPEKKKERI-ILKGDVPSPIDPPNGCRFH 290
Query: 299 PRCPKVMSICKEKVPELKE---IEPGHFVACH 327
RCP C+ + PEL+ ++ GH ACH
Sbjct: 291 TRCPFATDKCRTETPELRTADYMKDGHLAACH 322
>pir||E82301 peptide ABC transporter, ATP-binding protein VC0617 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655050|gb|AAF93783.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 327
Score = 249 bits (628), Expect = 5e-65
Identities = 131/329 (39%), Positives = 202/329 (60%), Gaps = 20/329 (6%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P++ +RNL V + T AG V+A VSFD+ GE F L GE+GCGKS + ++ +L + P
Sbjct: 4 PLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPA 63
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
I G+V++ +D +LK S+E ++ R E++ +FQ +L+P+ T+ Q + +
Sbjct: 64 FITGGEVIFNGED-----ILKYSDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVI 118
Query: 127 EVHGKI-----KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
H + K EG+ + VDI S R+N+YPH+ SGGM+QR+VI I ++
Sbjct: 119 TRHTNMTREQAKRRAEGLLEIVDIHPS--------RLNDYPHQFSGGMRQRLVIAIALAL 170
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
NP+++I DEPTTALDV +Q +IL + +KE++ +++ ITH+L ++ E +DR+ +MY+G
Sbjct: 171 NPKMIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSG 230
Query: 242 KIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIE-KLEAIPGTVPNLITPPGGCRFHPR 300
+++E+ QI + P HPYT+GL + P PLT + KL IPG NL+ P GCRF R
Sbjct: 231 ELIEVAPSKQILETPYHPYTKGLGSSFP-PLTGPKTKLTGIPGNPLNLLDIPQGCRFQAR 289
Query: 301 CPKVMSICKEKVPELKEIEPGHFVACHLY 329
C +V C + L++IE G F CHLY
Sbjct: 290 CDRVHEACTKVPTVLRQIEHGRFSNCHLY 318
>pir||A72216 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4982328|gb|AAD36815.1|AE001813_7 (AE001813)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 247 bits (623), Expect = 2e-64
Identities = 136/325 (41%), Positives = 208/325 (63%), Gaps = 15/325 (4%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+P+LQ +L +F I+KA++ +S ++ +GET LVGE+GCGKS R I +L+
Sbjct: 11 KPLLQTVDLKKYFPQGKRILKAVDGISIEIKEGETLGLVGESGCGKSTLGRTILKLLRPD 70
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
G G++ + +G D+ L+++E++ R ++ IFQDP SL+P TVG I +
Sbjct: 71 G----GKIFF---EGK--DITNLNDKEMKPYR-KKMQIIFQDPLGSLNPQMTVGRIIEDP 120
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ +H KI + KE ++ ++L V I +N++PHE SGG +QR+ I ++ NP+
Sbjct: 121 LIIH-KIGTKKERRKRVEELLDMVGIG--REFINSFPHEFSGGQQQRIGIARALALNPKF 177
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
++ DEP +ALDV+IQAQI+DLL ++++K + + I HNL VV + +VAVMY GKIVE
Sbjct: 178 IVCDEPVSALDVSIQAQIIDLLEEIQQKMGISYLFIAHNLAVVEHISHKVAVMYLGKIVE 237
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPN-PLT-KIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
G VD+IF NP+HPYT+ LL++VP P + ++ ++ G +P+ I P GCRF RC +
Sbjct: 238 YGDVDKIFLNPIHPYTRALLKSVPKIPWDGQKQRFYSLKGELPSPIDLPKGCRFQTRCTE 297
Query: 304 VMSICKEKVPELKEIEPGHFVACHL 328
+IC EK PEL E+E HFV+CHL
Sbjct: 298 KKAICFEKEPELTEVEKNHFVSCHL 322
>pir||H71951 dipeptide transport system dipeptide transport system ATP-binding
protein - Helicobacter pylori (strain J99)
>gi|4154800|gb|AAD05856.1| (AE001465) DIPEPTIDE
TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 246 bits (622), Expect = 2e-64
Identities = 130/284 (45%), Positives = 190/284 (66%), Gaps = 8/284 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
IL+V++L +F+T G+ KA++ VSF + K +T +VGE+G GKS+TS +I LIE PG+
Sbjct: 2 ILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEKPGK 61
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRK-IRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
IV G + + D LL+L E++++K IRG +I IFQ+P SL+P YTVG+QI E +
Sbjct: 62 IVGGSIQFLGQD-----LLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVL 116
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
++H + KE +++ V L+ V IP + + YP LSGG +QRV+I + + P IL
Sbjct: 117 KIHHPSLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEIL 176
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQIL+L+ ++++K +++ ITH+LGVVA+ AD V VMY G +VE
Sbjct: 177 IADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQ 236
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEK--LEAIPGTVPNL 288
+ ++F +P HPYT+ LL A+P P + K LE + V L
Sbjct: 237 ASAKELFADPRHPYTKALLNAIPKPGKEYRKKRLETVDENVDYL 280
>pir||T34760 oligopeptide ABC transporter ATP-binding protein - Streptomyces
coelicolor >gi|3402247|emb|CAA20183.1| (AL031184)
oligopeptide ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 496
Score = 246 bits (621), Expect = 3e-64
Identities = 136/333 (40%), Positives = 200/333 (59%), Gaps = 24/333 (7%)
Query: 6 EPILQVRNLTVHF-------YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
E +L+V L HF G V+A++ + F+V GET +VGE+GCGKS R I
Sbjct: 37 ETLLKVTGLQKHFPIRKGLLQRQVGAVRAVDGIDFEVRSGETLGVVGESGCGKSTMGRLI 96
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
T+L+E VE Q D+ L +R +R ++ IFQDP++SL+P +T+
Sbjct: 97 TRLLEPTAGKVEFQGK---------DITHLGVGGMRPLR-RDVQMIFQDPYSSLNPRHTI 146
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
G ++ ++ G + G++K V L SV+ +P N YPHE SGG +QR+ I
Sbjct: 147 GTIVSAPFKLQGV--QPEGGVKKEVQRLLSVVGLNP-EHYNRYPHEFSGGQRQRIGIARA 203
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
++ NPR+++ADEP +ALDV+IQAQ+++LL+ ++++ T ++I H+L VV +DR+AVM
Sbjct: 204 LALNPRLVVADEPVSALDVSIQAQVVNLLDDLQQELGLTYVIIAHDLSVVRHVSDRIAVM 263
Query: 239 YAGKIVEIGTVDQIFKNPLHPYTQGLLRAV--PNPLTKIEKLEAI--PGTVPNLITPPGG 294
Y GKI+E+ D ++K P+HPYT+ L+ AV P+P + K E I G VP+ I PP G
Sbjct: 264 YLGKIMELADRDLLYKTPMHPYTKALMSAVPIPDPARRGAKSERILLKGDVPSPIAPPSG 323
Query: 295 CRFHPRCPKVMSICKEKVPELKEIEPGHFVACH 327
CRFH RC K +C P LKE+ PG VACH
Sbjct: 324 CRFHTRCWKATQVCTTTEPPLKELRPGQQVACH 356
>pir||F72428 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980512|gb|AAD35122.1|AE001690_16 (AE001690)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 330
Score = 245 bits (620), Expect = 4e-64
Identities = 140/328 (42%), Positives = 195/328 (58%), Gaps = 9/328 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E +L+ N+ ++ VKA++ +SF++ + E +VGE+GCGK+ S I + P
Sbjct: 3 EILLKAENVRAYYKLEKVSVKAVDGLSFEILEDEVIGVVGESGCGKTTLSNVIFMNMVKP 62
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEI-RKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
+V+G++ + R +G V+L ++ +E+ RK G EI I Q +L P + +
Sbjct: 63 LTLVDGKI-FLRVNGEFVELSSMTRDEVKRKFWGKEITIIPQAAMNALMPTIRMEKYVRH 121
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
E HG + +E + KA + V + DP + YP ELSGGM+QR VI I NP
Sbjct: 122 LAESHGIDE--EELLDKARRRFEEVGL-DPLW-IKRYPFELSGGMRQRAVIAIATILNPS 177
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEK-YKATVILITHNLGVVAETADRVAVMYAGKI 243
+LIADEPT+ALDV Q +L +L +MK + ++I ITH++ V + ADR+ +MYAGKI
Sbjct: 178 LLIADEPTSALDVVNQKVLLKVLMQMKRQGIVKSIIFITHDIATVRQIADRMIIMYAGKI 237
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAV--PNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRC 301
VE V+ + + PLHPYTQGL +V P P K + IPG PNLI PP GCRFHPRC
Sbjct: 238 VEFAPVESLLEKPLHPYTQGLFNSVLTPEPEVKKRGITTIPGAPPNLINPPSGCRFHPRC 297
Query: 302 PKVMSICKEKVPELKEIEPGHFVACHLY 329
P M +CKEK P L EIEPG VAC LY
Sbjct: 298 PHAMDVCKEKEPPLTEIEPGRRVACWLY 325
>emb|CAC11410.1| (AL445063) probable sporulation protein (spo0KD) [Thermoplasma
acidophilum]
Length = 321
Score = 245 bits (620), Expect = 4e-64
Identities = 134/326 (41%), Positives = 203/326 (62%), Gaps = 11/326 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L +++L V + T AG K I+ ++ D+ +GE +LVGE+ GKS + I++++ G
Sbjct: 2 LLSIKHLNVWYNTVAGKYKVIDDLNLDIDQGELVSLVGESASGKSTLGQVISRMLPPVG- 60
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
I G+V+ DG VD+LKLSE+E+ KIRG + IFQ+P SL+P+ + Q+ EA+
Sbjct: 61 ITSGEVVL---DG--VDVLKLSEKEMTKIRGTTVFMIFQNPLNSLNPVKRIEEQLMEALA 115
Query: 128 VHGKIKSIK----EGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+ +I+ E ++ + L+S+ +PDP + + YPHELSGG QRVVI + + P
Sbjct: 116 IRNSRMNIQMTFEEARKEVIKALESLRLPDPEKILIRYPHELSGGQVQRVVICMALLLRP 175
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
++LIADEPTTALDVTIQAQ++ LL + K T+I ITH++G+ +DR+ V YAG++
Sbjct: 176 KLLIADEPTTALDVTIQAQVVKLLKDLNRDTKMTIIFITHDVGLAYVLSDRMLVFYAGRV 235
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
+E G +I KNPLHPYT GLL ++P+ KL +IPG P+ ++ P GC+F PRC
Sbjct: 236 MEQGQTVEIVKNPLHPYTSGLLASIPSSPKHSGKLYSIPGYPPSYLSLPKGCKFAPRCRF 295
Query: 304 VMSICKEKVPELKEIEPGHFVACHLY 329
C E+ P + + + C LY
Sbjct: 296 AFERCFEEEPSYIK-KDNRLIRCWLY 320
>pir||E64557 dipeptide transport ATP-binding protein dppD - Helicobacter pylori
(strain 26695) >gi|2313399|gb|AAD07370.1| (AE000548)
dipeptide ABC transporter, ATP-binding protein (dppD)
[Helicobacter pylori 26695]
Length = 287
Score = 245 bits (619), Expect = 5e-64
Identities = 130/284 (45%), Positives = 190/284 (66%), Gaps = 8/284 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
IL+V++L +F+T G+ KA++ VSF + K +T +VGE+G GKS+TS +I LIE PG+
Sbjct: 2 ILEVKDLKTYFFTDKGVNKAVDGVSFGLKKSQTLCIVGESGSGKSITSLSILGLIEKPGQ 61
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRK-IRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
IV G + + D LL+L E++++K IRG +I IFQ+P SL+P YTVG+QI E +
Sbjct: 62 IVGGSIQFLGQD-----LLQLKEKQMQKEIRGKKIGMIFQEPMTSLNPSYTVGFQINEVL 116
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
++H + KE +++ V L+ V IP + + YP LSGG +QRV+I + + P IL
Sbjct: 117 KIHHPNLNKKERLERVVYELERVGIPHAGDKYHEYPFNLSGGQRQRVMIAMAMVCEPEIL 176
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQIL+L+ ++++K +++ ITH+LGVVA+ AD V VMY G +VE
Sbjct: 177 IADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVVAQIADEVVVMYKGHVVEQ 236
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEK--LEAIPGTVPNL 288
+ ++F +P HPYT+ LL A+P P + K LE + V L
Sbjct: 237 ASAKELFADPRHPYTKALLSAIPKPGKEYRKKRLETVDENVDYL 280
>pir||F71483 probable dipeptide transport - Chlamydia trachomatis (serotype D,
strain UW3/Cx) >gi|3329143|gb|AAC68285.1| (AE001339) ABC
Transport ATPase [Chlamydia trachomatis]
Length = 321
Score = 243 bits (615), Expect = 2e-63
Identities = 127/324 (39%), Positives = 200/324 (61%), Gaps = 7/324 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+P+LQV+NL+V A++ +SFDV+ G+T A++GE+G GKS+T++++ QL+
Sbjct: 4 QPLLQVKNLSVSLNRNRVSFLAVDSLSFDVFPGQTLAIIGESGSGKSITAQSLMQLLPEE 63
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
+ G+ L+ +++ LL + + G++I+ IFQ+P AS DP++T+ Q E
Sbjct: 64 NFSLSGEALFNKEN-----LLDRKNTNAKVLFGSKISMIFQNPLASFDPVFTIEQQFHEV 118
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ H I + K ++ + +L+ DP R + YPHELSGGM QR+ I + + +P +
Sbjct: 119 IRTHLGISN-KMAHEQMLAVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDL 177
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDV++Q QIL LL +++K ++++ITH++GVVAE AD V V+YAG++ E
Sbjct: 178 LIADEPTTALDVSVQYQILQLLKTLQKKTGMSLLIITHDMGVVAEMADDVFVLYAGRMAE 237
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
+V +IF +P HPYT+ LL + P+ + + I G P+ + P GC + PRC K
Sbjct: 238 YSSVQEIFHSPAHPYTEDLLASRPSQYRQ-QTFVPIAGQPPHYTSLPKGCCYSPRCRKAQ 296
Query: 306 SICKEKVPELKEIEPGHFVACHLY 329
IC EK P+ + H V C LY
Sbjct: 297 PICFEKSPDSLSLNDHHRVRCWLY 320
>gb|AAK43155.1| Maltose ABC transporter, ATP-binding protein [Sulfolobus
solfataricus]
Length = 617
Score = 243 bits (614), Expect = 2e-63
Identities = 129/330 (39%), Positives = 203/330 (61%), Gaps = 12/330 (3%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
M ++ + +L+V LT ++ G V + V+F+VY E FA+ GE+GCGKS + AI
Sbjct: 1 MEEIMDSLLKVNELTAGYFNQDGFVIGVTNVNFEVYPNEIFAIAGESGCGKSTLAMAIYG 60
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
L++ PG ++ G V Y +D D+L +++EE+RK+R E Y+ Q +LDP+ +G
Sbjct: 61 LLKYPGVVLRGHV-YLKDK----DILSITQEELRKLRMKEFVYVPQFAMDALDPVAKIGD 115
Query: 121 QIAEAMEVHG-KIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
Q+ A HG ++ ++ I++ ++ L+ P VN YPHELSGGM+QRVVI I
Sbjct: 116 QMMRAAVSHGVNVEEARKLIKEKLE-----LVDLPYNVVNMYPHELSGGMRQRVVIATSI 170
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
NP ++I DEPTT LDV +Q +IL L +++ + ++++I+H++ ++ +DRV +MY
Sbjct: 171 LLNPSLIILDEPTTGLDVIVQYEILKDLKRIQRQLGVSLVIISHDISMLLMISDRVGIMY 230
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITP-PGGCRFH 298
AG+IVEIG+ ++I K P HPYT L+ ++P+ + + EKL +IPG P +++ P CRF+
Sbjct: 231 AGEIVEIGSKEEIIKRPSHPYTYLLISSLPSLVKRREKLLSIPGNPPLMLSKVPNSCRFY 290
Query: 299 PRCPKVMSICKEKVPELKEIEPGHFVACHL 328
RCP M C P L +I GH C L
Sbjct: 291 DRCPFKMEKCSTLNPALGDIMDGHKARCFL 320
Score = 168 bits (421), Expect = 9e-41
Identities = 93/277 (33%), Positives = 158/277 (56%), Gaps = 20/277 (7%)
Query: 6 EPILQVRNLTVHFYTYAGIV-----KAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
E ++++ NL+ +Y ++ A+ VSF++ KG ALVG +G GKS ++ +
Sbjct: 354 EVVMKILNLSKIYYIRKNLILSEPINAVNDVSFELKKGTITALVGGSGHGKSTIAKILAG 413
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRG--NEIAYIFQDPHASLDPLYTV 118
+I+ G+++ D +SE +R + IFQDP++SLDP +TV
Sbjct: 414 MIQQ----TSGKIILLGKD--------VSEYGVRNSMWYKENVQMIFQDPYSSLDPRHTV 461
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
+ + + +H K+ + + + K +++LK+V + P + + YPHELSGG +QRV I
Sbjct: 462 RWHVERPLLIHKKVSNKDQLLPKIIEVLKNVGLKPPEKYLYKYPHELSGGERQRVAIARA 521
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ P++L+ADEP + LD +++A IL+L+ K K K +++ ITH++ V AD + V+
Sbjct: 522 TAVEPKVLVADEPVSMLDASLRAGILNLIKKFK-KNGISILYITHDIATVNYIADEIMVI 580
Query: 239 YAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKI 275
Y G+IVE G ++ NP H YT+ L+ AVP+P I
Sbjct: 581 YKGRIVEKGNTYEVISNPSHEYTKRLIEAVPDPYKTI 617
>pir||D71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256910|dbj|BAA29593.1|
(AP000002) 324aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 324
Score = 241 bits (609), Expect = 8e-63
Identities = 133/326 (40%), Positives = 204/326 (61%), Gaps = 16/326 (4%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L+VRNL +++ T G VKA++ VSF+V KGE F + GE+GCGKS ++ ++ P
Sbjct: 3 LLRVRNLRIYYSTPRGFVKAVDGVSFEVKKGEVFGIAGESGCGKSTLVHSL--ILRKPPM 60
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+G ++ DL+KLS EE RKI+ E++ I Q +L+P + + +
Sbjct: 61 THKGGKAIFKGK----DLMKLSREEARKIQYKELSIIPQYAMNALNPTKKIKDIVWDLAR 116
Query: 128 VHGKI--KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
HG K +++ +++ + ++K L P A YP ELSGGM+QR + + NP +
Sbjct: 117 EHGMQDKKEVEKLLKERLSMVK--LSPKVAEM---YPVELSGGMRQRATMVVSTLLNPDL 171
Query: 186 LIADEPTTALDVTIQAQILDLLNK-MKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
LIADE T+ALDVT Q +++LL+ M+E ++I +TH+L ++ + ADRV +MYAGK+V
Sbjct: 172 LIADEVTSALDVTTQRVVIELLHHFMEEGIVKSIIFVTHDLALLRQIADRVMIMYAGKVV 231
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLT--KIEKLEAIPGTVPNLITPPGGCRFHPRCP 302
EIG+++++ ++P HPYTQ LL ++P K E+L IPG +L+ PP GCRF+ RCP
Sbjct: 232 EIGSMEEVLESPAHPYTQLLLNSLPRMGVHYKRERLRGIPGYPISLLNPPEGCRFYTRCP 291
Query: 303 KVMSICKEKVPELKEIEPGHFVACHL 328
M +C+E PEL E+ PGH+ ACHL
Sbjct: 292 YAMQVCREVEPELVEVSPGHYAACHL 317
>dbj|BAA35517.1| (D90720) Hypothetical ABC transporter ATP-binding protein in bcr
5'region. [Escherichia coli] >gi|4062406|dbj|BAA35524.1|
(D90721) Hypothetical ABC transporter ATP-binding
protein in bcr 5'region. [Escherichia coli]
Length = 659
Score = 240 bits (607), Expect = 1e-62
Identities = 126/263 (47%), Positives = 182/263 (68%), Gaps = 2/263 (0%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L V NL + F + A+ +SF + +GET A+VGE+G GKSVT+ A+ +L+E G
Sbjct: 48 VLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG 107
Query: 68 IVE-GQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
+V+ ++L R V++L + + ++R +RG ++A IFQ+P SL+P++TVG QIAE++
Sbjct: 108 LVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI 167
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
+H S +E + +A +L V IP+ ++ YPH+LSGGM+QRV+I + +S P +L
Sbjct: 168 RLHQNA-SREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVL 226
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQIL L+ ++++ VI ITH++GVVAE ADRV VMY G+ VE
Sbjct: 227 IADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET 286
Query: 247 GTVDQIFKNPLHPYTQGLLRAVP 269
GTV+QIF P HPYT+ LL AVP
Sbjct: 287 GTVEQIFHAPQHPYTRALLAAVP 309
Score = 212 bits (534), Expect = 5e-54
Identities = 129/328 (39%), Positives = 199/328 (60%), Gaps = 34/328 (10%)
Query: 6 EPILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
EP+L+VRNL F +G+ V A+EKVSFD++ GET +LVGE+G GKS T RA+
Sbjct: 347 EPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRAL 406
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+L+ES G G++++ +G +D L S +++ +R +I +IFQDP+ASLDP T+
Sbjct: 407 LRLVESQG----GEIIF---NGQRIDTL--SPGKLQALR-RDIQFIFQDPYASLDPRQTI 456
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGI 177
G I E + VHG + K+ + +L+ V L+P+ A R YPHE SGG +QR+ I
Sbjct: 457 GDSIIEPLRVHGLLPG-KDAAARVAWLLERVGLLPEHAWR---YPHEFSGGQRQRICIAR 512
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ NP+++IADE +ALDV+I+ QI++LL ++ + + I+H++ VV + RVAV
Sbjct: 513 ALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV 572
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRF 297
MY G+IVEIG +F+NP HPYT+ LL AVP ++ + + L++
Sbjct: 573 MYLGQIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRV------LLSDDLPSNI 626
Query: 298 HPRCPKVMSICKEKVPELKEIEPGHFVA 325
H R +V ++ L+ + PGH+VA
Sbjct: 627 HLRGEEVAAV------SLQCVGPGHYVA 648
>sp|P75796|YLIA_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YLIA
Length = 629
Score = 240 bits (607), Expect = 1e-62
Identities = 126/263 (47%), Positives = 182/263 (68%), Gaps = 2/263 (0%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L V NL + F + A+ +SF + +GET A+VGE+G GKSVT+ A+ +L+E G
Sbjct: 18 VLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG 77
Query: 68 IVE-GQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
+V+ ++L R V++L + + ++R +RG ++A IFQ+P SL+P++TVG QIAE++
Sbjct: 78 LVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI 137
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
+H S +E + +A +L V IP+ ++ YPH+LSGGM+QRV+I + +S P +L
Sbjct: 138 RLHQNA-SREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVL 196
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQIL L+ ++++ VI ITH++GVVAE ADRV VMY G+ VE
Sbjct: 197 IADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET 256
Query: 247 GTVDQIFKNPLHPYTQGLLRAVP 269
GTV+QIF P HPYT+ LL AVP
Sbjct: 257 GTVEQIFHAPQHPYTRALLAAVP 279
Score = 212 bits (534), Expect = 5e-54
Identities = 129/328 (39%), Positives = 199/328 (60%), Gaps = 34/328 (10%)
Query: 6 EPILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
EP+L+VRNL F +G+ V A+EKVSFD++ GET +LVGE+G GKS T RA+
Sbjct: 317 EPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRAL 376
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+L+ES G G++++ +G +D L S +++ +R +I +IFQDP+ASLDP T+
Sbjct: 377 LRLVESQG----GEIIF---NGQRIDTL--SPGKLQALR-RDIQFIFQDPYASLDPRQTI 426
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGI 177
G I E + VHG + K+ + +L+ V L+P+ A R YPHE SGG +QR+ I
Sbjct: 427 GDSIIEPLRVHGLLPG-KDAAARVAWLLERVGLLPEHAWR---YPHEFSGGQRQRICIAR 482
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ NP+++IADE +ALDV+I+ QI++LL ++ + + I+H++ VV + RVAV
Sbjct: 483 ALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV 542
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRF 297
MY G+IVEIG +F+NP HPYT+ LL AVP ++ + + L++
Sbjct: 543 MYLGQIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRV------LLSDDLPSNI 596
Query: 298 HPRCPKVMSICKEKVPELKEIEPGHFVA 325
H R +V ++ L+ + PGH+VA
Sbjct: 597 HLRGEEVAAV------SLQCVGPGHYVA 618
>pir||E64820 probable oligopeptide transport protein - Escherichia coli
>gi|1787051|gb|AAC73916.1| (AE000185) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 612
Score = 240 bits (605), Expect = 2e-62
Identities = 126/263 (47%), Positives = 182/263 (68%), Gaps = 2/263 (0%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L V NL + F + A+ +SF + +GET A+VGE+G GKSVT+ A+ +L+E G
Sbjct: 1 MLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG 60
Query: 68 IVE-GQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
+V+ ++L R V++L + + ++R +RG ++A IFQ+P SL+P++TVG QIAE++
Sbjct: 61 LVQCDKMLLQRRSREVIELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI 120
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
+H S +E + +A +L V IP+ ++ YPH+LSGGM+QRV+I + +S P +L
Sbjct: 121 RLHQNA-SREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVL 179
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTTALDVTIQAQIL L+ ++++ VI ITH++GVVAE ADRV VMY G+ VE
Sbjct: 180 IADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVET 239
Query: 247 GTVDQIFKNPLHPYTQGLLRAVP 269
GTV+QIF P HPYT+ LL AVP
Sbjct: 240 GTVEQIFHAPQHPYTRALLAAVP 262
Score = 212 bits (534), Expect = 5e-54
Identities = 129/328 (39%), Positives = 199/328 (60%), Gaps = 34/328 (10%)
Query: 6 EPILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
EP+L+VRNL F +G+ V A+EKVSFD++ GET +LVGE+G GKS T RA+
Sbjct: 300 EPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRAL 359
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+L+ES G G++++ +G +D L S +++ +R +I +IFQDP+ASLDP T+
Sbjct: 360 LRLVESQG----GEIIF---NGQRIDTL--SPGKLQALR-RDIQFIFQDPYASLDPRQTI 409
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGI 177
G I E + VHG + K+ + +L+ V L+P+ A R YPHE SGG +QR+ I
Sbjct: 410 GDSIIEPLRVHGLLPG-KDAAARVAWLLERVGLLPEHAWR---YPHEFSGGQRQRICIAR 465
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ NP+++IADE +ALDV+I+ QI++LL ++ + + I+H++ VV + RVAV
Sbjct: 466 ALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV 525
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRF 297
MY G+IVEIG +F+NP HPYT+ LL AVP ++ + + L++
Sbjct: 526 MYLGQIVEIGPRRAVFENPQHPYTRKLLAAVPVAEPSRQRPQRV------LLSDDLPSNI 579
Query: 298 HPRCPKVMSICKEKVPELKEIEPGHFVA 325
H R +V ++ L+ + PGH+VA
Sbjct: 580 HLRGEEVAAV------SLQCVGPGHYVA 601
>pir||E70141 oligopeptide transport ATP-binding protein oppD - Lyme disease
spirochete >gi|2281462|gb|AAC46287.1| (AF000366)
oligopeptide permease homolog D [Borrelia burgdorferi]
>gi|2688243|gb|AAC66722.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Borrelia
burgdorferi]
Length = 290
Score = 239 bits (604), Expect = 3e-62
Identities = 125/264 (47%), Positives = 181/264 (68%), Gaps = 7/264 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E IL+++NLT+ F + + V+ V +GE A+VGE+G GKSVTS AI +L+
Sbjct: 4 ENILEIKNLTIEFRLKHTTIHPVSNVNLSVKRGEIRAIVGESGSGKSVTSMAILKLLPEL 63
Query: 66 GRIVE-GQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
+ + G++L+ D LLKLSE+E+ KIRGN+I+ IFQDP SL+P + Q+ E
Sbjct: 64 TTVYKSGEILFENQD-----LLKLSEKELLKIRGNKISMIFQDPMTSLNPFLRISTQLEE 118
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
+ +H + KE +KA+++LK+V + + R+ ++PH+ SGGM+QRV+I + +S +P
Sbjct: 119 TIILHQGLGK-KEAKEKAIEMLKTVGVVNAEERIKHFPHQFSGGMRQRVMIAMALSCHPS 177
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
+LIADEPTTALDVTIQ QIL L+ + +K+ + I ITH+L VVAE D V+VMY GKIV
Sbjct: 178 LLIADEPTTALDVTIQEQILLLIKNLSKKFNTSTIFITHDLAVVAEICDTVSVMYQGKIV 237
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAV 268
E GTV++IF NP HPYT GLL+++
Sbjct: 238 EEGTVEEIFNNPKHPYTIGLLKSI 261
>dbj|BAB04070.1| (AP001508) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 332
Score = 239 bits (604), Expect = 3e-62
Identities = 133/332 (40%), Positives = 197/332 (59%), Gaps = 23/332 (6%)
Query: 6 EPILQVRNLTVHFYTYAG-------IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
E +L+ + LT HF G +++A++ V +Y GET +VGE+GCGKS + +
Sbjct: 3 EVLLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLL 62
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+L+E G + + GS D L L E +R+ R ++I IFQDP +SL+P TV
Sbjct: 63 MRLLEP----TRGTLSFA---GS--DFLALKGEALRQKR-SDIQIIFQDPFSSLNPRMTV 112
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
I E ++ H K + K VD L + D + YPHE SGG +QR+ I
Sbjct: 113 REIIGEPLKTHRLAKG--NDLIKRVDELMDAVGLDRSY-AKRYPHEFSGGQRQRIGIARA 169
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
I+ P+++I DEP +ALDV+IQAQIL+L+ +++++++ T + I H L V +DR+AVM
Sbjct: 170 IALKPKLIICDEPVSALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVM 229
Query: 239 YAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNP---LTKIEKLEAIPGTVPNLITPPGGC 295
Y GK+VE+ + D +F P+HPY++GL++AVP P + +K + G +P+ + PP GC
Sbjct: 230 YLGKVVELASKDALFAQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGC 289
Query: 296 RFHPRCPKVMSICKEKVPELKEIEPGHFVACH 327
RFHPRCP C + P L E EPGHFVACH
Sbjct: 290 RFHPRCPYAQDKCTVQEPALTEKEPGHFVACH 321
>pir||E71130 probable oligopeptide transport ATP-binding protein APPD -
Pyrococcus horikoshii >gi|3257220|dbj|BAA29903.1|
(AP000003) 327aa long hypothetical oligopeptide
transport ATP-binding protein APPD [Pyrococcus
horikoshii]
Length = 327
Score = 239 bits (603), Expect = 4e-62
Identities = 132/321 (41%), Positives = 193/321 (60%), Gaps = 10/321 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
IL++ LTV + T G V A+ VSF V KG ++GE+G GKS I + + R
Sbjct: 4 ILEIEGLTVKYKTRYGTVHALSNVSFSVKKGSIVGIIGESGSGKSTLGHTILRTLPENAR 63
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRK-IRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
I G++++ +GS DLL++ EE R+ R +I+ IFQ+ + P++ + Q+ +
Sbjct: 64 IESGKIMF---EGS--DLLEIDEEVFRREFRWKKISMIFQNSMNAFSPVHRIQDQLLDVA 118
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
KS E ++ + L+ I + + YPHELSGG +QRV IG+ + +P I+
Sbjct: 119 RKCFPNKSRNELLEIIKEKLRIANIDESV--LKKYPHELSGGQRQRVAIGMALLADPEIV 176
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPTT LDV Q QIL+ L ++++ T++LITH++ VVA + V V+YAGK++E
Sbjct: 177 IADEPTTGLDVVTQYQILNRLKEIQKDLGITLLLITHDVSVVAALSTDVLVLYAGKVLEY 236
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
G + ++FKN HPYT LLR+ P EKL IPG+ P+L PP GC FHPRCP
Sbjct: 237 GDIKRVFKNSHHPYTYLLLRSYPE--MGKEKLYEIPGSPPDLRNPPSGCVFHPRCPYATD 294
Query: 307 ICKEKVPELKEIEPGHFVACH 327
+C+++ P+L EIE GHF ACH
Sbjct: 295 LCRKEEPKLVEIEEGHFSACH 315
>pir||JC5009 nucleotide-binding protein D - Methanosarcina mazei
>gi|1491738|emb|CAA62801.1| (X91502) ABC transporter
[Methanosarcina mazei]
Length = 317
Score = 238 bits (602), Expect = 5e-62
Identities = 140/324 (43%), Positives = 196/324 (60%), Gaps = 14/324 (4%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+ +L+V+NL V F V A+ +SF + + ET ALVGETGCGKSV + AI +L+ P
Sbjct: 7 DKLLEVKNLQVSFLGIK-TVTALSGISFSIGERETLALVGETGCGKSVAAHAIMRLLP-P 64
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
V+G V + +LL LSE+E+ +IRG EI IFQ+P +L+P+Y++G+Q+AE
Sbjct: 65 ESGVKGTV-----ELRGRNLLGLSEKEMTEIRGKEIGIIFQNPSLALNPVYSIGHQLAEP 119
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ +H K K K+ + +A + LK++ + +N YP SGGM QR +I +P +
Sbjct: 120 LRLHRKEKK-KKALSRAAEALKNMGFANTGEIINYYPSWCSGGMNQRFLIAASTILDPAL 178
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEP LD + +++ L ++KE+ K ++LI+H+LG V ADRVAVMYAG+IVE
Sbjct: 179 LIADEPGKGLDRSCLSELEAGLKRLKEEKKTALLLISHDLGFVRNLADRVAVMYAGEIVE 238
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
I IF+ PLHPYT+GLL ++P + IPG P L P GCRFHPRCP
Sbjct: 239 IADSSGIFEEPLHPYTKGLLNSLPE-----KGFIPIPGFSPPLSRLPSGCRFHPRCPLRK 293
Query: 306 SICKEKVPELKEIEPGHFVACHLY 329
C E PE+ E G V C LY
Sbjct: 294 RCCIENQPEIIETN-GRAVRCFLY 316
>emb|CAC16446.1| (AL450165) putative oligopeptide ABC transporter ATP-binding
protein [Streptomyces coelicolor]
Length = 288
Score = 238 bits (602), Expect = 5e-62
Identities = 131/265 (49%), Positives = 175/265 (65%), Gaps = 7/265 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+P+L++ L+V F+ +V A+ VS V GET A+VGE+G GKS T+ ++ +L SP
Sbjct: 25 QPLLEIDGLSVDFHLAGSVVHAVRDVSLHVRAGETLAVVGESGSGKSATALSVLRLNPSP 84
Query: 66 GRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
+ G++ R DG DLL+LSE+E+ ++RG +IA +FQDP LDPL VG Q+AE
Sbjct: 85 PCVYASGEI---RFDGR--DLLRLSEKELGRVRGRDIAMVFQDPMTCLDPLQRVGAQVAE 139
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
+ H + S E + A+ L V IPDPA R YPHELSGG++QRV+I + PR
Sbjct: 140 VLRHHTGM-SRAEAAKAALAALDEVGIPDPALRYRQYPHELSGGLRQRVMIATALVARPR 198
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
+LIADEPTTALDVT+Q QILDLL ++ K+ V+LITH+L VVAETADRV VM+ GK+V
Sbjct: 199 VLIADEPTTALDVTVQRQILDLLVTLQHKHDMGVVLITHDLAVVAETADRVVVMHRGKVV 258
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVP 269
E G V +F P YT+ LL A P
Sbjct: 259 ETGDVLDVFDRPADDYTRRLLAATP 283
>pir||F71211 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3258402|dbj|BAA31085.1|
(AP000007) 335aa long hypothetical oligopeptide
transport ATP-binding protein appF [Pyrococcus
horikoshii]
Length = 335
Score = 238 bits (600), Expect = 9e-62
Identities = 136/339 (40%), Positives = 196/339 (57%), Gaps = 28/339 (8%)
Query: 6 EPILQVRNLTVHFYTYAGI-----------VKAIEKVSFDVYKGETFALVGETGCGKSVT 54
EPIL+V NL +F G VKA++ VSF++YK + FALVGE+GCGK+ T
Sbjct: 3 EPILKVENLKKYFPVRRGFLSALRGEPQKFVKAVDGVSFEIYKQQVFALVGESGCGKTTT 62
Query: 55 SRAITQLIE-SPGRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASL 112
+ I +L+E + G+I +EGQ D+ +L +E K ++ IFQDP +S+
Sbjct: 63 GKLIVKLLEPTDGKIYLEGQ-----------DVTELRTKEEIKAYRRKVQMIFQDPFSSM 111
Query: 113 DPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQR 172
+P + + + E + +HG ++ E + L+ V I P V +PH LSGG +QR
Sbjct: 112 NPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQR 171
Query: 173 VVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETA 232
V I + NP ++ADEP + LDV+I+A+IL+L+ ++KEK T + ITH+L A
Sbjct: 172 VAIARALILNPTFVVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFA 231
Query: 233 DRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTK---IEKLEAIPGTVPNLI 289
D +AVMY G+IVE+G +I NPLHPYT+ LL AVP P+ + + K I G VP+ +
Sbjct: 232 DWIAVMYLGRIVEMGPAKEIIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAV 291
Query: 290 TPPGGCRFHPRCPKV-MSICKEKVPELKEIEPGHFVACH 327
P GCRFHPRC +C K P+L E H+V CH
Sbjct: 292 NIPSGCRFHPRCIYFKKGLCDVKQPQLIEYSHNHWVECH 330
>pir||G75202 dipeptide abc transporter, dipeptide-binding protein PAB0095 -
Pyrococcus abyssi (strain Orsay)
>gi|5457579|emb|CAB49070.1| (AJ248283) dipeptide ABC
transporter, dipeptide-binding protein [Pyrococcus
abyssi]
Length = 345
Score = 236 bits (597), Expect = 2e-61
Identities = 130/325 (40%), Positives = 197/325 (60%), Gaps = 22/325 (6%)
Query: 13 NLTVHFYTYAGIVK-------AIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
NL +F G+ K A++ +S ++ KGETF L GE+GCGKS R + +LIE
Sbjct: 11 NLKKYFPVRGGLFKQKNLYVHAVDGISINIRKGETFGLAGESGCGKSTFGRLLLRLIEP- 69
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
EG + + DG +D+ KL ++E+RK+R + +FQDP +SL+P T+ +
Sbjct: 70 ---TEGSIYF---DG--IDITKLDKDEMRKLR-RRMGIVFQDPKSSLNPRMTIYDTLKRP 120
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+E+H +S +E K V+IL++V + + ++ YPHELSGG QRV I I NP
Sbjct: 121 LEIHRLAESEEEKYDKIVEILEAVGLGE--EHLSRYPHELSGGQLQRVSIARAIITNPDF 178
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
++ DEPT+ALD+++QAQIL+LL ++ K+ T + I+H++ V+ +DR+ +MY GK+VE
Sbjct: 179 VVLDEPTSALDISVQAQILNLLVNLQRKFNLTYLFISHDISVLQYMSDRIGIMYLGKVVE 238
Query: 246 IGTVDQIFKNPL-HPYTQGLLRAVP--NPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCP 302
I ++D K + HPYT LL + P +P + + + G VP+ I P GCRFH RCP
Sbjct: 239 ILSIDDFRKGEIYHPYTAYLLLSTPALHPSKRTSRKVILTGEVPSPINVPPGCRFHVRCP 298
Query: 303 KVMSICKEKVPELKEIEPGHFVACH 327
V CK++ P L EI+ H+VACH
Sbjct: 299 FVTQKCKDEEPPLVEIKKDHYVACH 323
>sp|Q07733|OPPD_LACLA OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1075749|pir||A53290 oligopeptide transport protein
oppD - Lactococcus lactis subsp. lactis
>gi|308850|gb|AAA16163.1| (L18760) ATP binding protein
[Lactococcus lactis]
Length = 338
Score = 236 bits (596), Expect = 3e-61
Identities = 138/321 (42%), Positives = 201/321 (61%), Gaps = 8/321 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E IL+ + ++V F KAI + + +GE A+VGE+G GKS + A+ L
Sbjct: 4 ENILEAKQVSVAFRIAGKFQKAIYDIDLSLKRGEVLAIVGESGSGKSTFATAVMGLHNPN 63
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
+ G +L DD V+ + + + IRG+++ IFQ+P +L+PL +G QI E
Sbjct: 64 QTQITGSILL--DDEEVIGK---TGDSMASIRGSKVGMIFQNPLTALNPLMKIGQQIKEM 118
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ VH + + + +L+ V IP+P R VN +PH+LSGGM+QRV+I I I+N+P +
Sbjct: 119 LAVHD-VYPENQYESRIFQLLEQVGIPNPKRVVNQFPHQLSGGMRQRVMIAIAIANDPDL 177
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
+IADEPTTALDVTIQAQILDL+ ++++K A VILITH+LGVVAE AD VAVMYAG++VE
Sbjct: 178 IIADEPTTALDVTIQAQILDLILEIQKKKNAGVILITHDLGVVAEVADTVAVMYAGQLVE 237
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLI-TPPGGCRFHPRCPKV 304
+V+++F+NP HPYT+ LLR+ P+ T + L IPG+VP+L F R P +
Sbjct: 238 KTSVEELFQNPKHPYTRSLLRSNPSAETVSDDLYVIPGSVPSLSKIEYDKDLFLARVPWM 297
Query: 305 MSICKEKVPE-LKEIEPGHFV 324
++ + E + EI HFV
Sbjct: 298 KEEAQKVISEKMTEISSNHFV 318
>sp|P50980|OPPD_LACLC OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|495177|gb|AAB00533.1| (U09553) ATP binding protein
[Lactococcus lactis]
Length = 338
Score = 236 bits (596), Expect = 3e-61
Identities = 135/321 (42%), Positives = 201/321 (62%), Gaps = 8/321 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E IL+ + ++V F KAI + + +GE A+VGE+G GKS + A+ L
Sbjct: 4 ENILEAKQVSVAFRIAGKFQKAIYDIDLSLRRGEVLAIVGESGSGKSTLATAVMGLHNPN 63
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
+ G +L ++ ++ + + + IRG+++ IFQ+P +L+PL +G QI E
Sbjct: 64 QTQITGSILLDEEE-----VIGKTGDSMASIRGSKVGMIFQNPLTALNPLMKIGQQIKEM 118
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ VH + + + +L+ V IP+P R VN +PH+LSGGM+QRV+I I I+N+P +
Sbjct: 119 LAVHD-VYPENQYESRIFQLLEQVGIPNPKRVVNQFPHQLSGGMRQRVMIAIAIANDPDL 177
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
+IADEPTTALDVTIQAQILDL+ ++++K A VILITH+LGVVAE AD VAVMYAG++VE
Sbjct: 178 IIADEPTTALDVTIQAQILDLILEIQKKKNAGVILITHDLGVVAEVADTVAVMYAGQLVE 237
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLI-TPPGGCRFHPRCPKV 304
+V+++F+NP HPYT+ LLR+ P+ T + L IPG+VP+L F R P +
Sbjct: 238 KASVEELFQNPKHPYTRSLLRSNPSAETVSDDLYVIPGSVPSLSEIEYDKDLFLARVPWM 297
Query: 305 MSICKEKVPE-LKEIEPGHFV 324
++ + E + EI HFV
Sbjct: 298 KEEAQKVISEKMTEISSNHFV 318
>pir||C81746 peptide ABC transporter, ATP-binding protein TC0062 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190098|gb|AAF38947.1| (AE002273) peptide ABC
transporter, ATP-binding protein [Chlamydia muridarum]
Length = 321
Score = 236 bits (595), Expect = 3e-61
Identities = 124/324 (38%), Positives = 195/324 (59%), Gaps = 7/324 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+P+LQV+NL+V +E +SF+V+ G+T A++GE+G GKS+T++++ QL+
Sbjct: 4 QPLLQVKNLSVSLNRNTVSFPVVEDLSFNVFPGQTLAIIGESGSGKSITAQSLMQLLPEE 63
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
+ G+ ++++ LL + + G+++A IFQ+P AS DP++T+ Q E
Sbjct: 64 YFSISGEAFLHKEN-----LLDRKNLLSKTLFGSKMAMIFQNPLASFDPVFTIEQQFHEV 118
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ H + K ++ V +L+ DP R + YPHELSGGM QR+ I + + +P +
Sbjct: 119 IRTHLDLTK-KVAHEQIVTVLRETGFQDPERCIKLYPHELSGGMLQRMAIAMTLLTSPDL 177
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDV++Q QIL LL +++K ++++ITH++GVVAE AD V V+YAG++ E
Sbjct: 178 LIADEPTTALDVSVQYQILQLLKTLQKKTGMSLLVITHDMGVVAEMADDVFVLYAGRMAE 237
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
+V IF +P HPYT+ LL + P+ K + I G P+ P GC + PRC K +
Sbjct: 238 YSSVQDIFHSPAHPYTKDLLASRPSQYKK-QTFVPISGHPPHYTNLPKGCCYSPRCQKAL 296
Query: 306 SICKEKVPELKEIEPGHFVACHLY 329
IC ++ P + H V C LY
Sbjct: 297 PICYKQSPHAISLNDHHHVRCWLY 320
>pir||F75026 oligopeptide transport ATP-binding protein appf. PAB1197 -
Pyrococcus abyssi (strain Orsay)
>gi|5459166|emb|CAB50652.1| (AJ248288) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF. [Pyrococcus abyssi]
Length = 335
Score = 235 bits (593), Expect = 6e-61
Identities = 133/339 (39%), Positives = 195/339 (57%), Gaps = 28/339 (8%)
Query: 6 EPILQVRNLTVHFYTYAGI-----------VKAIEKVSFDVYKGETFALVGETGCGKSVT 54
EPIL+V NL +F G V+A++ +SF+VYK + FALVGE+GCGK+ T
Sbjct: 3 EPILKVENLKKYFPIRRGFLASLRGEPQQFVRAVDGISFEVYKQQVFALVGESGCGKTTT 62
Query: 55 SRAITQLIE-SPGRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASL 112
+ + +L+E + G+I +EGQ D+ +L +E K + IFQDP +S+
Sbjct: 63 GKLVVKLLEPTDGKIYLEGQ-----------DVTQLRTKEEIKAYRRRVQMIFQDPFSSM 111
Query: 113 DPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQR 172
+P + + + E + +HG ++ E + L+ V I P V +PH LSGG +QR
Sbjct: 112 NPRFRIYDVLEEPLLIHGIGETRAEREELIYKALEMVKITPPEEYVGRFPHMLSGGQRQR 171
Query: 173 VVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETA 232
V I + NP ++ADEP + LDV+I+A+IL+L+ ++KEK T + ITH+L A
Sbjct: 172 VAIARALILNPTFIVADEPVSMLDVSIRAEILELMKELKEKMGVTYLYITHDLSTARYFA 231
Query: 233 DRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTK---IEKLEAIPGTVPNLI 289
D +AVMY G+IVE+G ++ NPLHPYT+ LL AVP P+ + + K I G VP+ +
Sbjct: 232 DWIAVMYLGRIVEMGPAKEVIDNPLHPYTRALLAAVPEPIPERKDVIKELPIKGEVPSAV 291
Query: 290 TPPGGCRFHPRCPKV-MSICKEKVPELKEIEPGHFVACH 327
P GCRFHPRC +C K P+L E H+V CH
Sbjct: 292 NIPPGCRFHPRCVYFKKGLCDTKEPKLIEYSHNHWVECH 330
>gb|AAG22038.1|AF305387_5 (AF305387) OppF [Bacillus thuringiensis]
Length = 311
Score = 235 bits (592), Expect = 8e-61
Identities = 130/326 (39%), Positives = 197/326 (59%), Gaps = 28/326 (8%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
M K E +++V+N+ HF G+VKA+ +SFD+Y+GETF LVGE+GCGKS T R I +
Sbjct: 1 MTKQREKLIEVKNVKQHFDVSGGVVKAVNDISFDIYRGETFGLVGESGCGKSTTGRTIIR 60
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
L ++ G+VL+ DG V K S E++K ++ IFQDP+ASL+P TVG
Sbjct: 61 LYDATA----GEVLF---DGENVHGKK-SRAELKKFN-RKMQMIFQDPYASLNPRMTVGD 111
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
IAE +++HG KS KE + + ++L +V + N +PHE SGG +QR+ I ++
Sbjct: 112 IIAEGIDIHGLAKSKKERMDRVHELLNTVGLNK--EHANRFPHEFSGGQRQRIGIARALA 169
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
P +IADEP +ALDV+IQAQ+++LL K++++ T + I H+L +V +DR+ VMY
Sbjct: 170 VEPEFIIADEPISALDVSIQAQVVNLLKKLQKEKGLTYLFIAHDLSMVKYISDRIGVMYR 229
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
G+IVE+ T ++++ NP+HPYT+ LL A+P P E+ ++ P +
Sbjct: 230 GQIVELTTSEELYANPVHPYTKSLLSAIPLPDPDYER------NRKRIVYDPSQHDY--- 280
Query: 301 CPKVMSICKEKVPELKEIEPGHFVAC 326
+VP ++EI PGHFV C
Sbjct: 281 --------GREVPTMREIRPGHFVLC 298
>gb|AAG10493.1|AF279106_55 (AF279106) predicted ABC transporter ATPase subunit [uncultured
proteobacterium EBAC31A08]
Length = 532
Score = 231 bits (584), Expect = 7e-60
Identities = 123/266 (46%), Positives = 176/266 (65%), Gaps = 8/266 (3%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
IL+V +L+++F T G+ A++ +SFD+ K +T ALVGE+G GKSVT+ +I QL++ P
Sbjct: 4 ILEVSDLSINFSTRDGLFNAVDNISFDIEKNQTLALVGESGSGKSVTAMSILQLLQKPQA 63
Query: 68 IV--EGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
E + + D+ ++ E++ +RGN I+ IFQ+P SL+P + VG QI E+
Sbjct: 64 SYSKESSIKFNGDE-----IINAKYEKLLSLRGNIISMIFQEPMTSLNPYHRVGNQITES 118
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ +H K S K+ I +A ++ V I D RR YPHELSGG +QRV+I + + N P +
Sbjct: 119 ILLHSK-SSKKDAIDEAKKLMALVEIDDVERRFYAYPHELSGGQRQRVMIAMALVNKPEL 177
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVTIQAQILDL++K+K + +++ ITH+LG+V E +D V VM GKIVE
Sbjct: 178 LIADEPTTALDVTIQAQILDLMSKLKNELGMSILFITHDLGLVQEFSDNVCVMKNGKIVE 237
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNP 271
G ++F NP H YT+ LL A P P
Sbjct: 238 QGNTVEVFNNPSHEYTKKLLDAEPQP 263
Score = 166 bits (417), Expect = 3e-40
Identities = 98/269 (36%), Positives = 153/269 (56%), Gaps = 22/269 (8%)
Query: 6 EPILQVRNLTVHF------YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
EPI+++ +L V++ + A++ SF +YK T LVGE+G GKS +AI
Sbjct: 272 EPIIEINDLNVYYSIPSTNFFKKNTFHAVKNTSFSIYKNTTIGLVGESGSGKSTLGKAIA 331
Query: 60 QLIESPGRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
L+ G I EG+ D+ S++E ++++ N + +FQDP+ SL P TV
Sbjct: 332 NLVSYKGNIKFEGR-----------DINSNSQKENKELKKN-VQIVFQDPYGSLSPRMTV 379
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
G + E + VH K+ KE ++ +L V I A+ N YPHE SGG +QR+ I
Sbjct: 380 GEIVGEGLGVHFKLTK-KERDERIDKVLSDVGIEIVAK--NKYPHEFSGGQRQRIAIARS 436
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ NP +I DEPT+ALD +IQ Q++DLL +++ +Y T + I+H+L V+ +D + VM
Sbjct: 437 LIMNPAFMILDEPTSALDRSIQIQVIDLLKEIQNEYGLTYLFISHDLKVIRSMSDFIFVM 496
Query: 239 YAGKIVEIGTVDQIFKNPLHPYTQGLLRA 267
G+IVE G ++F++P YT+ LL A
Sbjct: 497 KNGEIVESGPSHKVFESPEQDYTKKLLSA 525
>pir||C72371 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981011|gb|AAD35585.1|AE001726_19 (AE001726)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 384
Score = 231 bits (584), Expect = 7e-60
Identities = 136/378 (35%), Positives = 204/378 (52%), Gaps = 62/378 (16%)
Query: 8 ILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
IL+V NL HF AG+ VKA++ VSF + +GETF LVGE+GCGK+ + +
Sbjct: 5 ILRVENLVKHFPIRAGVFKRIVGWVKAVDGVSFSINEGETFGLVGESGCGKTTIGMTLLR 64
Query: 61 LIE-SPGRIV---EGQVLYYRDDGSVVDLLK---------LSEEEIRKIRG--------- 98
L E + GRI+ E Y+ +K + E ++ K+ G
Sbjct: 65 LYEPTSGRIIVDNEDTTYYFMPRSKAKKYIKQTYLSRFVNMKESDVEKLEGVDREYARIF 124
Query: 99 ---------------------------NEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGK 131
E+ +FQDP++SL+P V + E + H +
Sbjct: 125 FEEAKGSPKKFMSILLDDLPEKRKKFRREMQIVFQDPYSSLNPRLRVKSIVGEGIVTH-R 183
Query: 132 IKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEP 191
I KE ++ +IL+ V IP + V +PHE SGG +QR+ I ++ P++++ADE
Sbjct: 184 IARGKEVEKRIKEILEDVGIP--SAYVYRFPHEFSGGQRQRIGIARALALEPKLVVADEA 241
Query: 192 TTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQ 251
ALDV+I++QI++L+ ++ ++K T I I+H+L VV +DR+ VMY GK+VE+
Sbjct: 242 VAALDVSIRSQIINLMEDLQREHKLTYIFISHDLAVVKHISDRIGVMYLGKMVELAPKKD 301
Query: 252 IFKNPLHPYTQGLLRA--VPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICK 309
+F+ PLHPYT L+ A VP+P K E++ + G VP+ I PP GCRFH RCP IC
Sbjct: 302 LFEKPLHPYTVALMSAIPVPDPTKKRERI-ILKGDVPSPINPPSGCRFHTRCPIAKEICS 360
Query: 310 EKVPELKEIEPGHFVACH 327
++ P +E+E GHFVACH
Sbjct: 361 KEEPAFREVEEGHFVACH 378
>sp|P77268|YDDP_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDDP
>gi|7445758|pir||G64901 ABC-type transport protein b1484
- Escherichia coli >gi|1742424|dbj|BAA15139.1| (D90789)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1742435|dbj|BAA15149.1| (D90790)
Dipeptide transport ATP-binding protein DppD.
[Escherichia coli] >gi|1787759|gb|AAC74557.1| (AE000245)
putative ATP-binding component of a transport system
[Escherichia coli K12]
Length = 328
Score = 231 bits (583), Expect = 9e-60
Identities = 127/311 (40%), Positives = 184/311 (58%), Gaps = 8/311 (2%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+P+L ++ L + F + G V A+ VS + +GE LVGE+G GKSVT+ I +L+ +
Sbjct: 3 QPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTG 62
Query: 66 GRIVE-GQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
V GQ+ +D +L E+++R+ RG +A IFQ+P +L+P +G Q+ +
Sbjct: 63 SYCVHRGQISLLGED-----VLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMD 117
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
+ H I S +E KA+D+L+ + IPD ++ YP ELSGGM+QRV+I + S P+
Sbjct: 118 VIRHHQPI-SRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQ 176
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
++IADEPTTALDVT+Q Q+L LL V+ I+H++ VV++ D V VMYAG ++
Sbjct: 177 LIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVI 236
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKV 304
E G + +P HPYT GLL+ P + L AIPGTVPNL P GC F RC
Sbjct: 237 ESGVTADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGTVPNLTHLPDGCAFRDRCYAA 296
Query: 305 MSICKEKVPEL 315
+ C E VP L
Sbjct: 297 GAQC-ENVPAL 306
>pir||B82393 ABC transporter, ATP-binding protein VCA0977 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658417|gb|AAF96873.1| (AE004424) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 539
Score = 231 bits (582), Expect = 1e-59
Identities = 118/278 (42%), Positives = 177/278 (63%), Gaps = 5/278 (1%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P P+LQVRNL+V F T G+V A++ VSFD+ GET A+VGE+G GKSV++ A+ QL+
Sbjct: 3 PNPLLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLLPK 62
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
RI + + + +LL ++ ++R+IRG+ I IFQ+P SL+P VG Q+AE
Sbjct: 63 NARIHPESSIMFEGE----ELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQVAE 118
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
A+ H + S + Q+ +++ + V +PDP +PHE SGG QR++I + + N P
Sbjct: 119 AIRCHRNV-SQNQAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQLQRIMIAMALINEPD 177
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
ILIADEPTTALDVT+QA++L L+ +++ ++ ITH+LGVV ADRV VM G +V
Sbjct: 178 ILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKFVADRVLVMCKGDVV 237
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIP 282
E G+ +Q+F P H YT+ L+ ++P ++A P
Sbjct: 238 EQGSTEQLFLQPEHDYTRMLINSIPKGSKDPVAVDAAP 275
Score = 160 bits (400), Expect = 3e-38
Identities = 95/269 (35%), Positives = 153/269 (56%), Gaps = 22/269 (8%)
Query: 7 PILQVRNLTVHFYTYAGIV-------KAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
P+L+ ++ V F + +A++ +S ++ +GET +VGE+G GKS RA+
Sbjct: 275 PLLKAEDIRVKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALI 334
Query: 60 QLIESPGRIV-EGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
L+ S G+I +GQ D LSE++ ++ +I +FQDP+ SL P TV
Sbjct: 335 GLLPSTGQIAFKGQ-----------DFRALSEKQRLALK-KDIQMVFQDPYGSLSPRMTV 382
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
G I E + VH S E +Q+A L+ V + DP +N YPHE SGG +QR+ I
Sbjct: 383 GEIITEGLLVHQPHISKLERMQRARRALEEVRL-DP-NSINRYPHEFSGGQRQRIAIARA 440
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ P ++ DEPT+ALD ++Q +++LL +++++ + I+H+L VV +DRV VM
Sbjct: 441 LILEPSFILLDEPTSALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVM 500
Query: 239 YAGKIVEIGTVDQIFKNPLHPYTQGLLRA 267
G+++E G+ + IF NP H YT+ L+ A
Sbjct: 501 QKGQVMEQGSAESIFHNPQHEYTKKLIAA 529
>emb|CAA39791.1| (X56347) OppF [Bacillus subtilis]
Length = 307
Score = 230 bits (581), Expect = 1e-59
Identities = 126/326 (38%), Positives = 197/326 (59%), Gaps = 28/326 (8%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
M ++ E +L++++L HF T G VKA++ +SFD+YKGET LVGE+GCGKS T R+I +
Sbjct: 1 MNELTEKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIR 60
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
L E+ +G+VL+ ++ K E RK++ IFQDP+ASL+P TV
Sbjct: 61 LYEA----TDGEVLFNGENVHGRKSRKKLLEFNRKMQ-----MIFQDPYASLNPRMTVAD 111
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
IAE +++H K+ KE +Q+ ++L++V + N YPHE SGG +QR+ I ++
Sbjct: 112 IIAEGLDIHKLAKTKKERMQRVHELLETVGLNK--EHANRYPHEFSGGQRQRIGIARALA 169
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
+P +IADEP +ALDV+IQAQ+++L+ +++++ T + I H+L +V +DR+ VMY
Sbjct: 170 VDPEFIIADEPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYF 229
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
GK+VE+ D++++NPLHPYT+ LL A+P P E+ R
Sbjct: 230 GKLVELAPADELYENPLHPYTKSLLSAIPLPDPDYER-----------------NRCSEY 272
Query: 301 CPKVMSICKEKVPELKEIEPGHFVAC 326
P V + + E +E++PGHFV C
Sbjct: 273 DPSVHQLKDGETMEFREVKPGHFVMC 298
>pir||D72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980803|gb|AAD35391.1|AE001712_4 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 328
Score = 230 bits (581), Expect = 1e-59
Identities = 117/325 (36%), Positives = 197/325 (60%), Gaps = 9/325 (2%)
Query: 6 EPILQVRNLTVHFYTYAG----IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
E I NL +++ +G ++A++ VS ++ E + + GE+GCGKS + +
Sbjct: 2 EKIAVAENLRAYYFIKSGDKTTSIRAVDNVSLHFFENEVYGIAGESGCGKSTLLKVLFGE 61
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
I+ P ++V+G+V++ + DG + +S ++++KIR ++Y+ Q + L+P+ +
Sbjct: 62 IKPPLKLVDGEVVF-KLDGEEYRINSMSLDQLKKIRWKYVSYVPQGSMSVLNPVRKIRRI 120
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
+ +E H + S +E + +++ +P R +++YPH+LSGGM+QRV I +
Sbjct: 121 FLDVIEEHTSM-SREEAFSRIESYFEALGLP--VRVLDSYPHQLSGGMRQRVTIALATVL 177
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
NP+++ ADEPTTALDV +Q ++ LL K+ ++ K T++++TH++GV A A R+ VMYAG
Sbjct: 178 NPKVIFADEPTTALDVVVQRGVIQLLKKIHKEQKNTLVIVTHDMGVHAHLATRIGVMYAG 237
Query: 242 KIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRC 301
+++E +IFKNPLHPYT+ L+ ++P + K E PG+ P+L P GC FHPRC
Sbjct: 238 RLIEEAETHEIFKNPLHPYTRFLINSLPRFGDRSRK-EGTPGSPPSLANLPSGCPFHPRC 296
Query: 302 PKVMSICKEKVPELKEIEPGHFVAC 326
P IC E P+L E+ H VAC
Sbjct: 297 PIADQICMEMEPDLIEVARNHKVAC 321
>pir||H82355 peptide ABC transporter, ATP-binding protein VC0170 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9654573|gb|AAF93346.1| (AE004107) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 571
Score = 230 bits (580), Expect = 2e-59
Identities = 112/274 (40%), Positives = 178/274 (64%), Gaps = 6/274 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L+V+NL + + + G+ A++ ++ D+ +GE +VGE+G GKS A+ L+ PG
Sbjct: 3 LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
I G+V + S LS + +R++RG++I +IFQDP SL+PL+TV +Q+ E +
Sbjct: 63 IAGGEVYLNGEKIS-----GLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIH 117
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
+ ++ S +E Q+A+ ++K V IP P R+ YPH+ SGGM+QRVVI I ++ P ++I
Sbjct: 118 ANMQV-SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLII 176
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDV+IQ QIL+L+ ++ +K +L+TH++GVV+ DRVAVMY G +VE G
Sbjct: 177 ADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFG 236
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAI 281
++ P HPYT+ L+ AVP K+++ +
Sbjct: 237 PTAKVLGTPEHPYTRSLISAVPRSDRKLDRFPLV 270
Score = 174 bits (436), Expect = 2e-42
Identities = 102/277 (36%), Positives = 159/277 (56%), Gaps = 22/277 (7%)
Query: 2 RKVPEPILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVT 54
RK P+L+V N+ + F T + V+A VSF V++GETF LVGE+G GKS
Sbjct: 296 RKYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTI 355
Query: 55 SRAITQLIE-SPGRIV-EGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASL 112
+R I L + + GR+ EG +DL L E R+ ++ +FQ+P+ S+
Sbjct: 356 ARVIAGLYQPNAGRVTFEG-----------IDLTALKSEHERRPLRRQMQMVFQNPYTSM 404
Query: 113 DPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQR 172
+P + IAE + H +S E Q D+L+ V + A YPHE SGG +QR
Sbjct: 405 NPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQR 462
Query: 173 VVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETA 232
+ I ++ PR+LI DEPT+ALDV++QAQIL+LL ++++ T++ I+H+L V+ +
Sbjct: 463 ISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMC 522
Query: 233 DRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVP 269
DRV VM G ++E+ +Q+F +P H Y++ L+ +P
Sbjct: 523 DRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMP 559
>gb|AAG20587.1| (AE005129) dipeptide ABC transporter ATP-binding; DppF
[Halobacterium sp. NRC-1]
Length = 943
Score = 230 bits (580), Expect = 2e-59
Identities = 125/262 (47%), Positives = 164/262 (61%), Gaps = 28/262 (10%)
Query: 73 VLYYRDDGSV--------VDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
VL R DG+ VDL E +R +RG E+ IFQDP SL+P TVG Q+AE
Sbjct: 195 VLRDRPDGAAHVRLTDARVDLTAAPERAMRDLRGGEMGMIFQDPMTSLNPSLTVGEQVAE 254
Query: 125 AMEVH------------GKIKSIKEG------IQKAVDILKSVLIPDPARRVNNYPHELS 166
++ +H G +I G + VD+L +V IP+P R++ YPHE S
Sbjct: 255 SLRLHRYGEQPTDSWLNGLRAAISRGDTDEQVVADVVDVLDAVGIPEPETRLDEYPHEFS 314
Query: 167 GGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLG 226
GGM+QRV+I I ++ PR+LIADEPTTALDVTIQAQILD ++ +++++ +V+ ITH+LG
Sbjct: 315 GGMRQRVLIAIALACRPRLLIADEPTTALDVTIQAQILDRISDLQDEFGMSVLFITHDLG 374
Query: 227 VVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVP 286
VVAET DRVAVMYAG+IVE G V++IF NP HPYT LL ++P ++L I G VP
Sbjct: 375 VVAETCDRVAVMYAGEIVEEGPVEEIFHNPSHPYTYALLESIPR--DDADRLHPIEGNVP 432
Query: 287 NLITPPGGCRFHPRCPKVMSIC 308
+LI P GC F RCP C
Sbjct: 433 DLIDLPSGCHFEARCPWASDAC 454
Score = 229 bits (579), Expect = 3e-59
Identities = 129/319 (40%), Positives = 192/319 (59%), Gaps = 31/319 (9%)
Query: 6 EPILQVRNLTVHFYTYAGI-----------VKAIEKVSFDVYKGETFALVGETGCGKSVT 54
EP+L R L HF G VKA++ V DVY+GET LVGE+GCGKS T
Sbjct: 502 EPLLSSRGLEKHFSRADGWLDSMLGGDQEPVKAVDGVDLDVYEGETLGLVGESGCGKSTT 561
Query: 55 SRAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDP 114
R+I +L+E +G+V++ DD + L+++E+R R ++ IFQDP +SLDP
Sbjct: 562 GRSILRLVEP----TDGRVVFAGDD-----VTDLNDDELRATR-TDMQMIFQDPLSSLDP 611
Query: 115 LYTVGYQIAEAMEVH------GKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGG 168
++G I E +++H G + + + +D++ +V + DP++ + YPHELSGG
Sbjct: 612 RQSIGDTILEPLQIHDLPANPGAQSTRQARRDRVIDLMDAVGL-DPSQ-YDRYPHELSGG 669
Query: 169 MKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVV 228
+QRV I ++ +P ++ADEP +ALDV++QAQIL+LL +++++ T + I H+L VV
Sbjct: 670 QRQRVGIARALAVDPDFIVADEPVSALDVSVQAQILNLLEDLQDEFDLTYLFIAHDLSVV 729
Query: 229 AETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAV--PNPLTKIEKLEAIPGTVP 286
DR+AVMY GKIVE Q+F P HPYT+ LL ++ P+PL + + G VP
Sbjct: 730 RHICDRIAVMYLGKIVETAQTAQLFSTPKHPYTKSLLSSIPDPDPLATTDDRIILEGDVP 789
Query: 287 NLITPPGGCRFHPRCPKVM 305
+ I PP GCRF RCP V+
Sbjct: 790 SPIDPPSGCRFRTRCPSVI 808
>pir||A72618 probable oligopeptide transport ATP-binding protein APE1402 -
Aeropyrum pernix (strain K1) >gi|5105085|dbj|BAA80399.1|
(AP000061) 347aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 229 bits (579), Expect = 3e-59
Identities = 131/313 (41%), Positives = 195/313 (61%), Gaps = 21/313 (6%)
Query: 18 FYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYR 77
F+T A VKA++ V+ + +G+T LVGE+G GK+ R I +L E G G++ +
Sbjct: 46 FFTRA-YVKAVDNVTIGIPRGKTLGLVGESGSGKTTFGRVILRLEEPTG----GRIFF-- 98
Query: 78 DDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHG-KIKSIK 136
DG +D++KL +++ R IFQDP+ SL+P T+ IAE ++VHG K+ ++
Sbjct: 99 -DG--IDVMKLRGRGLKEFR-RRAQIIFQDPYGSLNPRKTIFNLIAEPIKVHGIKVGDLQ 154
Query: 137 EGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALD 196
E I V +L V + + + YPHE SGG +QR+ I ++ P ++ DEPT+ALD
Sbjct: 155 EYI---VSLLYQVGLNET--HLYRYPHEFSGGQRQRIAIARVLALKPEFIVLDEPTSALD 209
Query: 197 VTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNP 256
V++QAQIL+LL ++ KY T + I+H+LGVV +D +AVMY GKIVE G +++F+ P
Sbjct: 210 VSVQAQILNLLKDLQRKYSLTYLFISHDLGVVRYMSDYIAVMYLGKIVEFGEAEEVFEKP 269
Query: 257 LHPYTQGLLRAVPNPLTKIEKLEA---IPGTVPNLITPPGGCRFHPRCPKVMSICKEKVP 313
LHPYT+ LL ++P P ++ K + I G P+ I PP GCRF RCP + C E+ P
Sbjct: 270 LHPYTKVLLESIPVPDPEVAKRRSRIRIKGEPPSPINPPSGCRFRTRCPIAVDKCLEE-P 328
Query: 314 ELKEIEPGHFVAC 326
L+E+E GH+VAC
Sbjct: 329 PLEEVERGHWVAC 341
>sp|P24137|OPPF_BACSU OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|98478|pir||E38447 oligopeptide transport ATP-binding
protein oppF - Bacillus subtilis
>gi|143608|gb|AAA62692.1| (M57689) sporulation protein
[Bacillus subtilis]
Length = 308
Score = 229 bits (578), Expect = 3e-59
Identities = 126/326 (38%), Positives = 198/326 (60%), Gaps = 27/326 (8%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
M ++ E +L++++L HF T G VKA++ +SFD+YKGET LVGE+GCGKS T R+I +
Sbjct: 1 MNELTEKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIR 60
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
L E+ +G+VL+ ++ K E RK++ IFQDP+ASL+P TV
Sbjct: 61 LYEA----TDGEVLFNGENVHGRKSRKKLLEFNRKMQ-----MIFQDPYASLNPRMTVAD 111
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
IAE +++H K+ KE +Q+ ++L++V + N YPHE SGG +QR+ I ++
Sbjct: 112 IIAEGLDIHKLAKTKKERMQRVHELLETVGLNK--EHANRYPHEFSGGQRQRIGIARALA 169
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
+P +IADEP +ALDV+IQAQ+++L+ +++++ T + I H+L +V +DR+ VMY
Sbjct: 170 VDPEFIIADEPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYF 229
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
GK+VE+ D++++NPLHPYT+ LL A+P P E+ N +
Sbjct: 230 GKLVELAPADELYENPLHPYTKSLLSAIPLPDPDYER---------NRVR-------QKY 273
Query: 301 CPKVMSICKEKVPELKEIEPGHFVAC 326
P V + + E +E++PGHFV C
Sbjct: 274 DPSVHQLKDGETMEFREVKPGHFVMC 299
>sp|Q53194|Y4TS_RHISN PROBABLE PEPTIDE ABC TRANSPORTER ATP-BINDING PROTEIN Y4TS
>gi|1486423|emb|CAA92401.1| (Z68203) OppF homologue
[Rhizobium sp.] >gi|2182649|gb|AAB91872.1| (AE000098)
Y4tS [Rhizobium sp. NGR234]
Length = 353
Score = 229 bits (577), Expect = 4e-59
Identities = 134/334 (40%), Positives = 201/334 (60%), Gaps = 27/334 (8%)
Query: 6 EPILQVRNLTVHFYTYAG-------IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
+ +L+V +LT H+ AG +V+A+E VSF V GET +VGE+GCGKS +R +
Sbjct: 3 DALLKVESLTKHYPIEAGWFKTNVPVVRAVEDVSFTVQAGETLCVVGESGCGKSTLARLL 62
Query: 59 TQLIE-SPGRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY 116
+LI+ + GR+ VEG D+ L + E+R R + +FQDP++SL+P
Sbjct: 63 MRLIDPTSGRVLVEG-----------TDIAGLRKNELRAWR-RRMQMVFQDPYSSLNPRL 110
Query: 117 TVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVI 175
T G I E +E + + S ++ + A D+L+ V + P+ A R YP E+SGG +QR+ I
Sbjct: 111 TAGQIITEPVE-NFECLSRRQRQELATDLLRKVGMSPEMASR---YPSEMSGGQRQRLGI 166
Query: 176 GIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRV 235
++ P ++IADE +ALDV++QAQIL+LL ++++ +I I+H+L VV RV
Sbjct: 167 ARALALKPSLIIADEAVSALDVSVQAQILNLLMDLQQETGIALIFISHDLAVVEHIGHRV 226
Query: 236 AVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEA-IPGTVPNLITPPGG 294
AVMY G+IVE+ D +F P+HPYT+ L+ A P P +LE + G VP+ + PP G
Sbjct: 227 AVMYLGRIVELSPRDALFAKPVHPYTEALIAAAPVPDPARARLEVPLEGEVPSPVNPPSG 286
Query: 295 CRFHPRCPKVMSICKEKVPELKEIEPGHFVACHL 328
C FHPRCP + C+ +VP L + G VACH+
Sbjct: 287 CAFHPRCPLAVDRCRAEVPPLVPMPDGRAVACHV 320
>pir||G75380 peptide ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459330|gb|AAF11129.1|AE002000_5 (AE002000) peptide
ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 346
Score = 229 bits (577), Expect = 4e-59
Identities = 130/329 (39%), Positives = 198/329 (59%), Gaps = 25/329 (7%)
Query: 8 ILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
+L+V NL +F G+ VKA+ ++F V KGE L+GE+G GK+ RA+ +
Sbjct: 27 LLEVNNLQKYFPIRGGLMSRVVANVKAVNDITFRVGKGEVVGLIGESGSGKTTAGRALLR 86
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
LIE G GQV++ + D+ KL + ++R R E+ IFQDP ASL+P TV
Sbjct: 87 LIEPTG----GQVIF-----NGTDITKLGKSQMRDYR-REMQIIFQDPFASLNPRMTVSD 136
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
+ EAM++H + K + + ++L+ V L P+ + YPHE SGG +QR+ I +
Sbjct: 137 ILGEAMQIHN-LHPGKARVDRIAELLQRVGLRPE---HMGRYPHEFSGGQRQRIGIARAL 192
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+ +P ++ADEP +ALDV+IQAQ+++L+ ++E+ TV+ I H+L VV DR+ VMY
Sbjct: 193 AVDPSFIVADEPVSALDVSIQAQVVNLIQDLQEELGLTVLFIAHDLHVVEYICDRMIVMY 252
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRA--VPNPLTKIEKLEAIPGTVPNLITPPGGCRF 297
G+I+EI ++ +NP HPYT+ LL A VP+P K +++ + G +P+ I PP GC F
Sbjct: 253 LGRIMEIAPSRELNRNPKHPYTEALLSASPVPDPTIKRQRI-ILEGDIPSPINPPSGCVF 311
Query: 298 HPRCPKVMSICKEKVPELKEIEPGHFVAC 326
RC ++ C VPEL+E+ P HF AC
Sbjct: 312 RTRCRYAIADCANIVPELREVSPDHFKAC 340
>gb|AAG20460.1| (AE005118) oligopeptide ABC transporter ATP-binding; OppD1
[Halobacterium sp. NRC-1]
Length = 267
Score = 229 bits (577), Expect = 4e-59
Identities = 115/250 (46%), Positives = 166/250 (66%), Gaps = 6/250 (2%)
Query: 83 VDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQKA 142
+DL LSE ++ +RG I++IFQ+P L+P+YTVG QI EA+ +H ++
Sbjct: 1 MDLTTLSETALQDVRGKRISHIFQNPQNGLNPVYTVGRQIGEAIRIHDHGDPEVPVQRQV 60
Query: 143 VDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQ 202
VD+L IP+ + RV++YPHE SGGMKQRV+I + ++ +P +LIADEPTTALDVTIQ Q
Sbjct: 61 VDLLDKTGIPEASARVDDYPHEFSGGMKQRVLIAMALACDPDLLIADEPTTALDVTIQGQ 120
Query: 203 ILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQ 262
IL LL ++ ++ +I +TH+LGVV+E ADRV VMYAGK++E GTV+ IF+NP HPYT+
Sbjct: 121 ILRLLEDLQAEHDMGIIFVTHDLGVVSEIADRVVVMYAGKVMETGTVEDIFRNPSHPYTR 180
Query: 263 GLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKE-KVPELKEIEPG 321
L+ +P ++++E G++P++ PP GCRF PRC C+ P L ++ G
Sbjct: 181 ALMDCLPGRGGSMDRIE---GSLPDVTDPPAGCRFSPRCEHATEACRSGDQPPLWGVDDG 237
Query: 322 --HFVACHLY 329
H +C Y
Sbjct: 238 DTHEASCVYY 247
>gi|10955092 moaD [Agrobacterium tumefaciens] >gi|11278927|pir||T45539 moaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665715|gb|AAB88475.1| (AF242881) moaD
[Agrobacterium tumefaciens]
Length = 588
Score = 228 bits (576), Expect = 6e-59
Identities = 123/270 (45%), Positives = 177/270 (65%), Gaps = 10/270 (3%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+ +L V+NL V F G + ++ +SFD+ G T A+VGE+G GKSVTS AI L+
Sbjct: 4 QSVLSVKNLNVAF----GKKQVVQDLSFDIAPGSTLAVVGESGSGKSVTSLAIMGLLPVG 59
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
G + + +LL LSE E+ IRG +I+ IFQ+P SL+P+ VG+QI EA
Sbjct: 60 VAKASGSIQL-----NGRELLSLSESEMCGIRGGKISMIFQEPMTSLNPVQKVGFQIGEA 114
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ +H ++ KE +++LK V IPD RR++NYPH SGGM+QRV+I + ++ NP +
Sbjct: 115 IRIHRGLRG-KELRNAVLEMLKKVGIPDAERRIDNYPHTFSGGMRQRVMIAMALACNPAL 173
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
+IADEPTTALDVT+QAQIL+LL +++ + ++ ITH++GVVAE ADRV VM G++VE
Sbjct: 174 IIADEPTTALDVTVQAQILELLKQLQRETNVALLFITHDMGVVAEIADRVLVMRGGQVVE 233
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKI 275
G VD +F P PYT+ L+ A P+ K+
Sbjct: 234 SGPVDSVFTRPESPYTKVLIEAAPSVAGKL 263
Score = 182 bits (456), Expect = 7e-45
Identities = 111/272 (40%), Positives = 161/272 (58%), Gaps = 24/272 (8%)
Query: 7 PILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
PIL+VR+LTV F G+ V A+EK SF + KGET LVGE+G GKS +AI
Sbjct: 285 PILEVRDLTVRFPLRGGLLGNVQGNVHAVEKASFAIGKGETLGLVGESGSGKSTIGKAII 344
Query: 60 QLIESPGR--IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYT 117
L G +V+G+ + Y D+ S+ L + ++ IFQDP SLD T
Sbjct: 345 DLAPRFGGSIVVDGRTIDYADEKSLAVLRR------------DVQMIFQDPFGSLDSRQT 392
Query: 118 VGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
+G I E M VHG I S +E +K +L+ V + DPAR ++ PHE SGG +QR+ I
Sbjct: 393 IGSAIVEPMYVHG-IASGRELREKMEWLLEKVGL-DPAR-ASSLPHEFSGGQRQRICIAR 449
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
+S +P+++IADE +ALDV I+ QI++L+ ++ ++ + + I+H++ V + RVAV
Sbjct: 450 ALSMSPKLIIADEAVSALDVAIKGQIIELMMDLQSEFGVSYLFISHDMAAVEKICTRVAV 509
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVP 269
MY G++VEIG D + P H YT+ LL AVP
Sbjct: 510 MYFGELVEIGGRDNVIGRPGHSYTKRLLSAVP 541
>pir||C72452 probable peptide transport ATP-binding protein APE2263 - Aeropyrum
pernix (strain K1) >gi|5105964|dbj|BAA81275.1|
(AP000064) 347aa long hypothetical peptide transport
ATP-binding protein [Aeropyrum pernix]
Length = 347
Score = 228 bits (574), Expect = 1e-58
Identities = 126/331 (38%), Positives = 193/331 (58%), Gaps = 23/331 (6%)
Query: 8 ILQVRNLTVHFYTYAG-----------IVKAIEKVSFDVYKGETFALVGETGCGKSVTSR 56
I+ +R L VH+ Y +V+A++ V + +GE A+VGE+GCGK+ +
Sbjct: 13 IVSIRGLKVHYPVYYSLLKRILGRPDAVVRAVDGVDLGIREGEVLAIVGESGCGKTTLGK 72
Query: 57 AITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY 116
AI IE P +YYR G ++ +L+ + R++R ++ +FQDP+ SLDPL
Sbjct: 73 AIVG-IEEPS----DGAIYYR--GELLTPHRLARD--RRLR-RKLQMVFQDPYKSLDPLM 122
Query: 117 TVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIG 176
VG Q+AE + +HG + +E ++AV++L++V + PH+LSGG +QRV I
Sbjct: 123 PVGDQVAEPLVIHGLARG-EEARRRAVEMLETVGLTPGREFYWRKPHQLSGGQRQRVAIA 181
Query: 177 IGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVA 236
+ P +++ADEP + +DV+++A ILDL+ + AT++LITH++ V ADR+A
Sbjct: 182 RTLVLEPEVIVADEPVSMIDVSMRASILDLIMDYHRRTGATIVLITHDIAVARAVADRIA 241
Query: 237 VMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCR 296
VMY GKIVE+G + +NP HPYT L+ + P+ + I G VP+ + P GCR
Sbjct: 242 VMYLGKIVEVGEPRSVIENPRHPYTAALVTSTPSISRRRPPRFPISGEVPSAVAIPPGCR 301
Query: 297 FHPRCPKVMSICKEKVPELKEIEPGHFVACH 327
FHPRCP S+C+ + P L E E G ACH
Sbjct: 302 FHPRCPLASSLCRSREPALVE-EGGRLYACH 331
>gb|AAA62693.1| (M57689) sporulation protein [Bacillus subtilis]
>gi|2633501|emb|CAB13004.1| (Z99110) oligopeptide ABC
transporter (ATP-binding protein) [Bacillus subtilis]
Length = 305
Score = 227 bits (572), Expect = 2e-58
Identities = 125/321 (38%), Positives = 195/321 (59%), Gaps = 27/321 (8%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E +L++++L HF T G VKA++ +SFD+YKGET LVGE+GCGKS T R+I +L E+
Sbjct: 3 EKLLEIKHLKQHFVTPRGTVKAVDDLSFDIYKGETLGLVGESGCGKSTTGRSIIRLYEA- 61
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
+G+VL+ ++ K E RK++ IFQDP+ASL+P TV IAE
Sbjct: 62 ---TDGEVLFNGENVHGRKSRKKLLEFNRKMQ-----MIFQDPYASLNPRMTVADIIAEG 113
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+++H K+ KE +Q+ ++L++V + N YPHE SGG +QR+ I ++ +P
Sbjct: 114 LDIHKLAKTKKERMQRVHELLETVGLNK--EHANRYPHEFSGGQRQRIGIARALAVDPEF 171
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
+IADEP +ALDV+IQAQ+++L+ +++++ T + I H+L +V +DR+ VMY GK+VE
Sbjct: 172 IIADEPISALDVSIQAQVVNLMKELQKEKGLTYLFIAHDLSMVKYISDRIGVMYFGKLVE 231
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
+ D++++NPLHPYT+ LL A+P P E+ N + P V
Sbjct: 232 LAPADELYENPLHPYTKSLLSAIPLPDPDYER---------NRVR-------QKYDPSVH 275
Query: 306 SICKEKVPELKEIEPGHFVAC 326
+ + E +E++PGHFV C
Sbjct: 276 QLKDGETMEFREVKPGHFVMC 296
>pir||D83419 probable ATP-binding component of ABC transporter PA1807 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9947791|gb|AAG05196.1|AE004607_2 (AE004607) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 226 bits (571), Expect = 2e-58
Identities = 119/265 (44%), Positives = 177/265 (65%), Gaps = 5/265 (1%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E IL++R+L V F + + +E VSFD+ +GET ALVGE+G GKSVT+ +I +L+
Sbjct: 3 ENILEIRDLAVEFLSGEQRQRVVEGVSFDIRQGETLALVGESGSGKSVTAHSILRLLPYS 62
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
++Y+ + DLLKL E +R IRGN IA +FQ+P SL+PL+T+ Q+AE
Sbjct: 63 VASHPAGSIHYQGE----DLLKLPERRLRGIRGNRIAMVFQEPMTSLNPLHTIEKQLAEV 118
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ +H + K + +++L+ V IP+PA+R+ YPHELSGG +QRV+I + ++ P++
Sbjct: 119 LALHKGLGGAKASA-RILELLELVGIPEPAKRLKAYPHELSGGQRQRVMIAMALACEPQL 177
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
LIADEPTTALDVT+Q +ILDLL ++ + +++LITH+L +V A RV VM G+IVE
Sbjct: 178 LIADEPTTALDVTVQLKILDLLKDLQARLGMSLLLITHDLNLVRRIAHRVCVMQQGRIVE 237
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPN 270
+ ++F P HPYT+ LL A P+
Sbjct: 238 QASCQELFAAPRHPYTRELLNAEPS 262
Score = 173 bits (435), Expect = 2e-42
Identities = 103/269 (38%), Positives = 160/269 (59%), Gaps = 21/269 (7%)
Query: 6 EPILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
E +L V +L V F G+ VKA++ V+F++ +G+T +VGE+G GKS AI
Sbjct: 272 ETLLAVDDLRVWFPIRKGVFRRTVDHVKAVDGVNFELPRGQTLGIVGESGSGKSTLGLAI 331
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+L+ES G I R +G+ +D L++ ++R +R E+ +FQDP+ SL P V
Sbjct: 332 LRLLESQGGI--------RFEGTRLD--GLAQHDVRPLR-REMQVVFQDPYGSLSPRMCV 380
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
G + E + +H +I S E Q +D L V + DP R YPHE SGG +QR+ I
Sbjct: 381 GEIVGEGLRIH-RIGSEAEQEQAIIDALVEVGL-DPQTRYR-YPHEFSGGQRQRIAIARA 437
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ P +++ DEPT+ALD T+Q Q+++LL +++ KY T + I+H+L VV + ++ V+
Sbjct: 438 LVLKPALILLDEPTSALDRTVQRQVVELLRQLQGKYNLTYLFISHDLAVVKALSHQLMVV 497
Query: 239 YAGKIVEIGTVDQIFKNPLHPYTQGLLRA 267
GK+VE G+ + +F +P HPYTQ LL A
Sbjct: 498 RHGKVVEQGSAEAVFASPQHPYTQQLLEA 526
>gi|11499360 dipeptide ABC transporter, ATP-binding protein (dppF)
[Archaeoglobus fulgidus] >gi|7442541|pir||B69471
dipeptide transport ATP-binding protein dppF -
Archaeoglobus fulgidus >gi|2648778|gb|AAB89479.1|
(AE000980) dipeptide ABC transporter, ATP-binding
protein (dppF) [Archaeoglobus fulgidus]
Length = 323
Score = 225 bits (568), Expect = 5e-58
Identities = 130/331 (39%), Positives = 196/331 (58%), Gaps = 26/331 (7%)
Query: 8 ILQVRNLTVHFYTYAGI-----------VKAIEKVSFDVYKGETFALVGETGCGKSVTSR 56
+L+V NL +F + V+A++ VSF++ +GE +LVGE+GCGK+ T R
Sbjct: 1 MLRVENLKKYFPVQKSVLEVLLSGRRDFVRAVDGVSFEMKQGEVLSLVGESGCGKTTTGR 60
Query: 57 AITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY 116
I L R G++ Y++D ++ LSEEE R+++ I +FQDP+ASL+P
Sbjct: 61 IIVGL----ERPTSGKI-YFKDR----EITSLSEEEQRRMK-RHIQMVFQDPYASLNPRM 110
Query: 117 TVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIG 176
+G + E++ +HG I E + A+ +L V +P + N P++LSGG +QRV I
Sbjct: 111 KIGEHLVESLTIHG-IAENDEAREMAMSMLDRVGLPGE-QFFNRMPYQLSGGQRQRVAIA 168
Query: 177 IGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVA 236
+ P ++ADEP + +DV+++A ILDLL +++Y +++ ITH+L V DR+A
Sbjct: 169 RAMILKPDFVVADEPVSMIDVSLRAAILDLLMSFRDEYNLSMLFITHDLSVARIVGDRIA 228
Query: 237 VMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCR 296
VMY GKI+EIG ++ NP HPYT LL +VP+ + K K+E I G + N I P GCR
Sbjct: 229 VMYLGKIMEIGKTREVIHNPRHPYTAALLSSVPSFVKKGRKVEII-GDIANPIDIPSGCR 287
Query: 297 FHPRCPKVMSICKEKVPELKEIEPGHFVACH 327
+HPRCP CK++ PEL+ E H ACH
Sbjct: 288 YHPRCPFAREKCKKEEPELEGGE--HSFACH 316
>pir||F83082 probable ATP-binding component of ABC dipeptide transporter PA4506
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9950746|gb|AAG07894.1|AE004864_6 (AE004864) probable
ATP-binding component of ABC dipeptide transporter
[Pseudomonas aeruginosa]
Length = 323
Score = 224 bits (565), Expect = 1e-57
Identities = 130/334 (38%), Positives = 206/334 (60%), Gaps = 31/334 (9%)
Query: 6 EPILQVRNLTVHFYTYAGI------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
E +L R+LT H+ G+ V+A+ VSF++ G+T A+VGE+GCGKS +RA+T
Sbjct: 2 ETVLTARDLTRHYEVSRGLFKGHAQVRALNGVSFELEAGKTLAVVGESGCGKSTLARALT 61
Query: 60 QLIESP--GRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY 116
LIE P G + + GQ ++ S+++ R++R ++ +FQ+P+ASL+P
Sbjct: 62 -LIEEPTSGSLKIAGQ-----------EVKGASKDQRRQLR-RDVQMVFQNPYASLNPRQ 108
Query: 117 TVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVI 175
+G Q+AE + ++ + S +E +K +++ V L P+ +R YPH SGG +QR+ +
Sbjct: 109 KIGDQLAEPLLINTAL-SREERREKVQQMMRQVGLRPEHYQR---YPHMFSGGQRQRIAL 164
Query: 176 GIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRV 235
+ P++L+ADEPT+ALDV+IQAQ+L+L ++++++ + I+HNL VV AD V
Sbjct: 165 ARAMMLQPKVLVADEPTSALDVSIQAQVLNLFMDLQQQFRTAYVFISHNLAVVRHVADDV 224
Query: 236 AVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVP--NPLTKIEKLEAIPGTVPNLITPPG 293
VMY G+ E+G D++++NPLHPYT+ LL A P +P K+ I G +PN + PP
Sbjct: 225 LVMYLGRPAEMGPADKLYENPLHPYTRALLSATPAIHPDPTKPKIR-IQGELPNPLNPPE 283
Query: 294 GCRFHPRCPKVMSICKEKVPELKEIEPGHFVACH 327
GC FH RCP C+ +VPEL+ ++ VACH
Sbjct: 284 GCAFHKRCPYATERCRSEVPELRLLDQRQ-VACH 316
>emb|CAC05751.1| (AL391751) putative peptide transport system ATP-binding protein
[Streptomyces coelicolor]
Length = 356
Score = 224 bits (565), Expect = 1e-57
Identities = 125/327 (38%), Positives = 193/327 (58%), Gaps = 25/327 (7%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGI--------VKAIEKVSFDVYKGETFALVGETGCGKS 52
M + EPIL+VR L H+ +GI VKA++ V F + +GET +VGE+GCGKS
Sbjct: 1 MAETTEPILEVRGLVKHYPLTSGILFKKQVGAVKAVDGVDFRLARGETLGIVGESGCGKS 60
Query: 53 VTSRAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASL 112
++ + L R G++ Y +D + +LS ++ +R N I +FQDP+ SL
Sbjct: 61 TVAKMLVNL----ERPTAGEIRYKGED-----ITRLSGRALKSVRRN-IQMVFQDPYTSL 110
Query: 113 DPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQ 171
+P TVG I EA ++H ++ + ++ D+L V L P+ +N YPH+ SGG +Q
Sbjct: 111 NPRMTVGDIIGEAYDIHPEVAPKGDRRRRVQDLLDVVGLNPE---YINRYPHQFSGGQRQ 167
Query: 172 RVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAET 231
R+ I G++ P I++ADEP +ALDV++QAQ+++L+ ++++++ + I I H+L +V
Sbjct: 168 RIGIARGLALRPEIIVADEPVSALDVSVQAQVINLMARLQDEFDLSYIFIAHDLSIVRHI 227
Query: 232 ADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLE---AIPGTVPNL 288
+DRV VMY G+IVE G ++I+ +P HPYTQ LL AVP P + + + G VP+
Sbjct: 228 SDRVGVMYLGRIVETGRDEEIYDHPTHPYTQALLSAVPVPDPEAREHRERIILSGDVPSP 287
Query: 289 ITPPGGCRFHPRCPKVMSICKEKVPEL 315
P GCRF RC K C +VP L
Sbjct: 288 TNIPSGCRFRTRCWKARERCALEVPAL 314
>emb|CAC11415.1| (AL445063) sporulation protein (spo0KD) related protein
[Thermoplasma acidophilum]
Length = 704
Score = 224 bits (564), Expect = 1e-57
Identities = 128/333 (38%), Positives = 197/333 (58%), Gaps = 28/333 (8%)
Query: 11 VRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVE 70
+RN++V F TY+GIV A+ VSFD+ +G +VGE+G GKS + +I L+ P +
Sbjct: 1 MRNVSVEFKTYSGIVHALSDVSFDLKQGRFLGIVGESGSGKSTLALSIMSLL--PENAMM 58
Query: 71 GQVLYYRDDGSVVDLL----------KLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
+Y + + D++ K+ E+ +R IR I+ +FQ S +P+YT+
Sbjct: 59 RGSIYLKGTEYISDVIINNAKKKKARKILEDNLRNIRWKNISMVFQGAMNSFNPVYTIRR 118
Query: 121 QIAEAMEVHGKI------KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVV 174
Q+ E ++H + K ++E ++ A + SVL + YPHELSGGMKQR V
Sbjct: 119 QMFEVFKIHTTLDNDEIEKKVEEALRMA-GLNISVL--------DMYPHELSGGMKQRAV 169
Query: 175 IGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKA-TVILITHNLGVVAETAD 233
I + +S +P I+IADEPTT LDV QA+I+ L K+KE K ++ILI+H+LGVV++ AD
Sbjct: 170 IAMALSLDPDIVIADEPTTGLDVITQAEIISQLKKLKENGKIKSLILISHDLGVVSQLAD 229
Query: 234 RVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPG 293
V V+YAGK+ E G +IF+N +PYT L+ + P+ +E IPG++P+ +
Sbjct: 230 EVMVLYAGKVFEYGEKSRIFQNTANPYTYKLIGSYPSIRNAKRYVEGIPGSLPDPMKIGK 289
Query: 294 GCRFHPRCPKVMSICKEKVPELKEIEPGHFVAC 326
GC+F RC +C+E+ PEL ++E H+ AC
Sbjct: 290 GCKFADRCYMARDVCREEEPELIKVEDNHYSAC 322
Score = 184 bits (462), Expect = 1e-45
Identities = 112/316 (35%), Positives = 173/316 (54%), Gaps = 19/316 (6%)
Query: 25 VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVD 84
V+A++ ++F + KGE +VGE+G GK+ + + L SP G++ Y +G V
Sbjct: 377 VRAVDDITFAIRKGEILGIVGESGSGKTTLGKTLLGLY-SP---TAGKITYSFSNGDVEI 432
Query: 85 LLKLSEEEI-RKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQ--- 140
SE E+ R E IFQDP+ SL+P TV +AE + K KE
Sbjct: 433 TPTTSESELMRSSIRKETQMIFQDPYDSLNPKLTVYDIVAEPIIARRYHKGNKEKDDIYK 492
Query: 141 ---KAVDILKSVLIPDPARRVNNY----PHELSGGMKQRVVIGIGISNNPRILIADEPTT 193
+ ++++K L + V NY PHELSGG +QRV + N +IADEPT+
Sbjct: 493 NPLEILNLVKIALAKASLKPVENYLFRYPHELSGGERQRVATARALVLNSEFIIADEPTS 552
Query: 194 ALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIF 253
LDV+I+A ++++ +++ K T++ I+H++ +D++ VMY GK VE+G+ D I
Sbjct: 553 MLDVSIRASFMNMMKEIRSKEGITMVYISHDIASTYYMSDKILVMYLGKAVEMGSADAII 612
Query: 254 KNPLHPYTQGLLRAVPNPLTKIE--KLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEK 311
PLHPYT+ L++A+P P + + K++ I G + N I P GCRF+ RC ICK+
Sbjct: 613 NEPLHPYTKALIKAIPTPFSDWDPSKIDII-GEIGNAINVPKGCRFYNRCIYRQDICKDN 671
Query: 312 VPELKEIEPGHFVACH 327
P +K E H+ CH
Sbjct: 672 PPTVKGAE-DHWYLCH 686
>sp|P47325|OPPD_MYCGE OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|1361734|pir||G64208 oligopeptide transport
ATP-binding protein amiE - Mycoplasma genitalium
>gi|1045756|gb|AAC71297.1| (U39688) oligopeptide ABC
transporter, ATP-binding protein (oppD) [Mycoplasma
genitalium]
Length = 402
Score = 223 bits (562), Expect = 3e-57
Identities = 129/358 (36%), Positives = 200/358 (55%), Gaps = 43/358 (12%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
IL + +L V+F GI+ A+ + V +G +VGE+G GKSV+ ++I ++
Sbjct: 21 ILDITDLHVNFKVKDGILHAVRGIDLKVERGSIVGIVGESGSGKSVSVKSIIGFNDNAQ- 79
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+ +++ +++ VD+ KL + + + RG ++YI QDP SL+P T+G Q+ EA+
Sbjct: 80 -TKAKLMNFKN----VDITKLKKHQWKYYRGTYVSYISQDPLFSLNPTMTIGKQVKEAIY 134
Query: 128 V---------------------------HGKIKSIKEGIQ----------KAVDILKSVL 150
V K+K IK+ Q K ++IL+ +
Sbjct: 135 VASKRRYFQAKSDLKFALSNKEIDKKTYKSKLKEIKQTYQQKIKPINVEKKTLEILQFIG 194
Query: 151 IPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKM 210
I D +R+ +P E SGGM+QR+VI I ++ P ++IADEPTTALDVTIQA++L L+ ++
Sbjct: 195 INDAKKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKVLTLIKQL 254
Query: 211 KEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPN 270
++ T+I I+HN+ ++A D V VMYAGKIVE G V++IF NPLHPYT L+ ++P
Sbjct: 255 RDLLNITIIFISHNISLIANFCDFVYVMYAGKIVEQGLVEEIFTNPLHPYTWALISSIPE 314
Query: 271 PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGHFVACHL 328
K + L +IPG +PN++TPP G F R ++I E P E+ H A L
Sbjct: 315 QKDKNKPLTSIPGVIPNMLTPPKGDAFASRNQYALAIDFEYHPPFFEVTKTHKAATWL 372
>gb|AAG09260.1| (AF176664) EppD [EDTA-degrading bacterium BNC1]
Length = 610
Score = 222 bits (561), Expect = 3e-57
Identities = 121/264 (45%), Positives = 177/264 (66%), Gaps = 8/264 (3%)
Query: 7 PILQVRNLTVHFYTYAGI-VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
P++ V LTV F + ++A+ VS+ + GE ALVGE+G GKSV++ A+ L+
Sbjct: 18 PLVSVSGLTVSFDRHREEPIEAVRDVSWSIGSGEVLALVGESGSGKSVSALAVMGLLPRN 77
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
R+ G + + ++ LL SE+ R +RG+ I + QDP SL+P+YT+G QI E
Sbjct: 78 ARVA-GSIRWRGEE-----LLGASEKRRRALRGSRIGLVPQDPMTSLNPVYTIGAQIREG 131
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ H K+ S +E ++ +++L+++ IP R+N+YPHELSGGM+QRVVI + ++NNP +
Sbjct: 132 IRAHQKL-SEREMAERTLELLETMGIPHARERMNSYPHELSGGMRQRVVIAMAMANNPDL 190
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
+IADE TTALDVT+QAQ+LD L K + A ++LITH+LGVVA ADRVAVM G++VE
Sbjct: 191 IIADEATTALDVTVQAQVLDALKKAQALTGAALLLITHDLGVVAGRADRVAVMQRGEVVE 250
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVP 269
GTVD+IF P YT+ LL ++P
Sbjct: 251 QGTVDEIFYQPASSYTRKLLHSIP 274
Score = 181 bits (455), Expect = 9e-45
Identities = 107/280 (38%), Positives = 169/280 (60%), Gaps = 24/280 (8%)
Query: 7 PILQVRNLTVHFYTYA--------GIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
PIL +RN+ HF Y+ G++KA+ V DV G T +VGE+G GK+ R++
Sbjct: 309 PILSMRNVGKHFPVYSRGVIRGRVGVIKAVAGVDLDVEAGTTLGIVGESGSGKTTLIRSL 368
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
L I G +L+ DG D+ ++ + R++R + +FQDP+ASLDP+ TV
Sbjct: 369 FNLEP----ITHGTILF---DGQ--DVHRMPPRDRRRMR-KCVQMVFQDPYASLDPMMTV 418
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGI 177
+ E ++ + + E ++ +++L+ V L P+ A R YP+E SGG +QR+ I
Sbjct: 419 RDILMEPAVINRMDRKLAE--RRVMELLERVHLKPEHAAR---YPNEFSGGQRQRIAIAR 473
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
+ PR+L+ DEP ++LDV+IQA++L LL ++++ + + ++H+L VVAE A V V
Sbjct: 474 ALMLYPRLLVLDEPVSSLDVSIQAEVLTLLKELQKDLNLSYLFVSHDLSVVAEIAHSVIV 533
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEK 277
MY G+IVE G VD++F+NP HPYT+ LL AVP P + E+
Sbjct: 534 MYRGRIVERGRVDELFRNPKHPYTRALLSAVPIPDPRTER 573
>pir||C75142 oligopeptide transport ATP-binding protein appf PAB0630 -
Pyrococcus abyssi (strain Orsay)
>gi|5458363|emb|CAB49852.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 222 bits (560), Expect = 4e-57
Identities = 126/326 (38%), Positives = 200/326 (60%), Gaps = 16/326 (4%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L VRNL V++ T G V+A++ VSF+V +GE F + GE+GCGKS ++ ++ P
Sbjct: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+G ++ DL+ L +E+RKI+ +E++ I Q +L+P + + +
Sbjct: 61 EYKGGSAIFKGR----DLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
Query: 128 VHGKI--KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
HG + ++E +++ + ++K L P R + YP ELSGGM+QR + + NP +
Sbjct: 117 EHGYADRREVEELLRERLSMVK--LSP---RVADMYPVELSGGMRQRATMVVSTLLNPDL 171
Query: 186 LIADEPTTALDVTIQAQILDLLNK-MKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
LIADE T+ALDVT Q +++LL+ M+E ++I +TH+L ++ + ADRV VMYAGK+V
Sbjct: 172 LIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV 231
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLT--KIEKLEAIPGTVPNLITPPGGCRFHPRCP 302
EIG ++++ +NP HPYTQ LL ++P K E+L IPG +L+ PP GCRF+ RCP
Sbjct: 232 EIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPKGCRFYTRCP 291
Query: 303 KVMSICKEKVPELKEIEPGHFVACHL 328
M C++ P+L ++ H+ ACHL
Sbjct: 292 FAMEDCRDVEPKLVKVGRDHYAACHL 317
>pir||F75068 dipeptide abc transporter, ATP-binding protein (dppd) PAB1346 -
Pyrococcus abyssi (strain Orsay)
>gi|5458956|emb|CAB50443.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppD) [Pyrococcus
abyssi]
Length = 322
Score = 222 bits (560), Expect = 4e-57
Identities = 127/326 (38%), Positives = 199/326 (60%), Gaps = 16/326 (4%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L VRNL V++ T G V+A++ VSF+V +GE F + GE+GCGKS ++ ++ P
Sbjct: 3 LLDVRNLRVYYRTPVGYVRAVDGVSFEVGEGEVFGVAGESGCGKSTLVHSL--ILRKPPM 60
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+G ++ DL+ L +E+RKI+ +E++ I Q +L+P + + +
Sbjct: 61 EYKGGSAIFKGR----DLMSLPRDELRKIQYSELSIIPQYAMNALNPTKRIKDIVWDLAR 116
Query: 128 VHGKI--KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
HG + ++E +++ + ++K L P R + YP ELSGGM+QR + + NP +
Sbjct: 117 EHGYADRREVEELLRERLSMVK--LSP---RVADMYPVELSGGMRQRATMVVSTLLNPDL 171
Query: 186 LIADEPTTALDVTIQAQILDLLNK-MKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
LIADE T+ALDVT Q +++LL+ M+E ++I +TH+L ++ + ADRV VMYAGK+V
Sbjct: 172 LIADEITSALDVTTQRVVIELLHHFMQEGIVKSIIFVTHDLALLRQIADRVMVMYAGKVV 231
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLT--KIEKLEAIPGTVPNLITPPGGCRFHPRCP 302
EIG ++++ +NP HPYTQ LL ++P K E+L IPG +L+ PP GCRF+ RCP
Sbjct: 232 EIGPMEEVLENPAHPYTQLLLNSLPRMGVHYKRERLSGIPGYPISLLNPPRGCRFYTRCP 291
Query: 303 KVMSICKEKVPELKEIEPGHFVACHL 328
M C E P+L ++ H+ ACHL
Sbjct: 292 FAMEHCPEVEPKLVKVGKEHYAACHL 317
>gb|AAC64256.1| (AF042861) putative OppF [Treponema denticola]
Length = 385
Score = 220 bits (554), Expect = 2e-56
Identities = 119/330 (36%), Positives = 194/330 (58%), Gaps = 26/330 (7%)
Query: 10 QVRNLTVHFYTYAGI------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
++ +L + + TY+ + V A + + +++GET LVGE+GCGKS R I +L +
Sbjct: 64 ELTDLILDYETYSDLHGQNLCVIANDGIDLVIHEGETVGLVGESGCGKSTLGRTILKLYK 123
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
G++ + + ++ + +RK ++ IFQDP++SL+P TVG I
Sbjct: 124 PTA----GEIFF--EGENITNYTVTQMMPLRK----KMQIIFQDPYSSLNPKMTVGQIIG 173
Query: 124 EAMEVHGKIKSIKEGIQKAV-DILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
EA+ HG K +K V +I+ + + D + YPHE SGG +QR+ I ++
Sbjct: 174 EALLEHGMFKKKDPAYEKYVKEIMNTCGLAD--YMIYRYPHEFSGGQRQRIGIARALALK 231
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P+ ++ DE +ALDV+IQ+QI++LLN +++++ + + I+H+L VV +DR+ VMY G
Sbjct: 232 PKFIVCDEAVSALDVSIQSQIINLLNDLQKEFNLSYLFISHDLSVVKHISDRIGVMYLGN 291
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEA-----IPGTVPNLITPPGGCRF 297
+VE +++ NPLHPYT+ LL A+P T ++K+ + G +P+ I P GC+F
Sbjct: 292 MVEFTDKREMYANPLHPYTKVLLSAIPE--TDLQKMRTKRRILLEGDIPSNIITPTGCKF 349
Query: 298 HPRCPKVMSICKEKVPELKEIEPGHFVACH 327
H RCP ICK ++P+ KE +PGHFVACH
Sbjct: 350 HTRCPIAKDICKREIPQFKEEKPGHFVACH 379
>gi|10955083 agaD [Agrobacterium tumefaciens] >gi|11346288|pir||T45532 agaD
protein [imported] - Agrobacterium tumefaciens plasmid
pTi15955 >gi|2665708|gb|AAB88468.1| (AF242881) agaD
[Agrobacterium tumefaciens]
Length = 569
Score = 219 bits (553), Expect = 3e-56
Identities = 116/274 (42%), Positives = 173/274 (62%), Gaps = 6/274 (2%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L++ NLTV F T G+ A+ VS ++ GE LVGE+G GK++ S A L+
Sbjct: 6 VLKIDNLTVAFKTGDGLRTAVNSVSLSLHSGEILGLVGESGSGKTILSLAAMGLLPPNAV 65
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+ G V ++ +D LL + +RK+RG IA IFQDP ASLDP++T G QI E++
Sbjct: 66 VAGGTVKFFGED-----LLTARPDVLRKLRGKRIAMIFQDPMASLDPVFTCGSQIVESIL 120
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
+H ++ + Q+A+D+L V I DP R + +YPHELSGG QRV+I + ++ P ++I
Sbjct: 121 LHERVPR-RNAHQRALDLLTKVGIVDPERCMGSYPHELSGGQCQRVMIAMAVACKPDVII 179
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDVT+Q Q+L+LL + ++ A ++LITH+LGV+ E ADRVAV+Y G ++E
Sbjct: 180 ADEPTTALDVTVQKQVLNLLQNLNQEIGAAILLITHDLGVIYEVADRVAVIYRGDMMEEA 239
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAI 281
+F P YT+ L+ ++P+ T +L I
Sbjct: 240 KTTDLFAAPKSAYTKALIASMPSVSTPKTRLPVI 273
Score = 182 bits (456), Expect = 7e-45
Identities = 105/270 (38%), Positives = 161/270 (58%), Gaps = 21/270 (7%)
Query: 6 EPILQVRNLTVHFYTYAGIV------KAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
+ +L +RNLT F+ + +A++ VS D+ T LVGE+GCGKS SR +
Sbjct: 302 QTLLTIRNLTKTFWLRESPLAPPKEFRAVDDVSLDIPARSTVGLVGESGCGKSTLSRLVM 361
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
+L+E +E DG +DL L E +R R N A +FQ+P+ SL+P TV
Sbjct: 362 RLMEPNSGTIEF-------DG--IDLTSLDRERLRHARQN-FALVFQNPYGSLNPRQTVT 411
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
IA +++H K + + + K +D +V +P A R YPHE SGG +QR+VI +
Sbjct: 412 DLIAAPVDIHAKGRDREAIVAKLLD---AVGLPRDAMR--RYPHEFSGGQRQRIVIARAL 466
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+ P++LI DE +ALDV++QAQ+L+LL +++++ T + ITH++ VV +D +AVM
Sbjct: 467 ALRPKLLICDEAVSALDVSVQAQVLNLLQDLQDEFDLTYLFITHDMSVVRHISDTIAVMQ 526
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAVP 269
G+IVE GT +++F +P YT+ LLRAVP
Sbjct: 527 KGRIVETGTAEEVFDHPKDEYTRTLLRAVP 556
>gb|AAG20461.1| (AE005118) oligopeptide ABC transporter ATP-binding; AppF
[Halobacterium sp. NRC-1]
Length = 440
Score = 219 bits (551), Expect = 5e-56
Identities = 125/328 (38%), Positives = 193/328 (58%), Gaps = 31/328 (9%)
Query: 6 EPILQVRNLTVHF-------YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
E +++V L H+ T G V+A++ VSF+V GET +VGE+GCGKS + ++
Sbjct: 14 ESLMRVDGLKKHYPITEGVLRTEVGRVRAVDGVSFEVRAGETLGIVGESGCGKSTVAESV 73
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+L + G V + +D + D + +++ R E IFQ+P +S DP T
Sbjct: 74 LRLTDPTA----GSVYFDGEDVTAYD-----DTALKRFR-REAQMIFQNPDSSFDPRMTT 123
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIP--DPARRVNNYPHELSGGMKQRVVIG 176
G +AE +++HG + ++ A D+L+ V + D AR YPHELSGG KQRV +
Sbjct: 124 GESVAEPLKIHG-VGPRSRRLEIARDLLERVGMSGEDAAR----YPHELSGGQKQRVALA 178
Query: 177 IGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVA 236
+ NPR+++ADEP +ALDV++QA++L LLN ++ ++ V+ I+H++GVV E DRVA
Sbjct: 179 RALVVNPRLIVADEPVSALDVSVQAEVLTLLNDIQAEFNLGVLFISHDMGVVREVCDRVA 238
Query: 237 VMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEA-IPGTVPNLITPPGGC 295
VMY G+IVE+G + +F +P HPYT+ LLR++P + +A + G VP PP GC
Sbjct: 239 VMYLGEIVEMGRTEDVFNDPEHPYTRALLRSIPTVGVESRGTDAGLRGEVPPPSDPPTGC 298
Query: 296 RFHPRCPKVMSICKEKVPELKEIEPGHF 323
FH RCP+V+ P+ + E H+
Sbjct: 299 NFHTRCPEVIQ------PDGYDFEQAHW 320
>sp|P37313|DPPF_ECOLI DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1073370|pir||S47762 dipeptide transport protein dppF
- Escherichia coli >gi|466679|gb|AAB18518.1| (U00039)
was dppE [Escherichia coli] >gi|1789962|gb|AAC76565.1|
(AE000431) putative ATP-binding component of dipeptide
transport system [Escherichia coli K12]
Length = 334
Score = 218 bits (550), Expect = 6e-56
Identities = 127/329 (38%), Positives = 200/329 (60%), Gaps = 23/329 (6%)
Query: 6 EPILQVRNLTVHFYTYAG------IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
+P+LQ +L H+ G +VKA++ VSF++ +G+T A+VGE+GCGKS R +T
Sbjct: 10 QPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLT 69
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
+IE P G LYY+ DLLK + + +K+R +I +FQ+P+ SL+P VG
Sbjct: 70 -MIEMP----TGGELYYQGQ----DLLK-HDPQAQKLRRQKIQIVFQNPYGSLNPRKKVG 119
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
+ E + ++ + S ++ +KA+ ++ V + + YPH SGG +QR+ I G+
Sbjct: 120 QILEEPLLINTSL-SKEQRREKALSMMAKVGLK--TEHYDRYPHMFSGGQRQRIAIARGL 176
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+P ++IADEP +ALDV+++AQ+L+L+ ++++ + + I+H+L VV AD V VMY
Sbjct: 177 MLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMY 236
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAVP--NPLTKIEKLEAIPGTVPNLITPPGGCRF 297
G+ VE GT DQIF NP HPYTQ LL A P NP + E+++ + G +P+ + PP GC F
Sbjct: 237 LGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIK-LSGELPSPLNPPPGCAF 295
Query: 298 HPRCPKVMSICKEKVPELKEIEPGHFVAC 326
+ RC + C + P+LK+ G VAC
Sbjct: 296 NARCRRRFGPCTQLQPQLKDY-GGQLVAC 323
>sp|P45094|DPPF_HAEIN DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF
>gi|1074010|pir||E64188 dipeptide transport ATP-binding
protein dppF - Haemophilus influenzae (strain Rd KW20)
>gi|972898|gb|AAA95975.1| (U17295) DppF [Haemophilus
influenzae] >gi|1574111|gb|AAC22837.1| (U32798)
dipeptide ABC transporter, ATP-binding protein (dppF)
[Haemophilus influenzae Rd]
Length = 327
Score = 217 bits (548), Expect = 1e-55
Identities = 121/328 (36%), Positives = 199/328 (59%), Gaps = 22/328 (6%)
Query: 7 PILQVRNLTVHFYTYAGI------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
P+L L ++ G+ VKA++ VSF + +G+T A+VGE+GCGKS R +T
Sbjct: 10 PLLNAIGLKKYYPVKKGLFAKPQQVKALDGVSFQLERGKTLAVVGESGCGKSTLGRLLT- 68
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
+IE P +G+ LYY+ + + + E + +R +I +FQ+P+ASL+P +G
Sbjct: 69 MIEEP---TKGE-LYYKGHNFLEN-----DSETKALRRKKIQIVFQNPYASLNPRKKIGS 119
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
+ E + ++ K+ S KE +K + +++ V + A + YPH SGG +QR+ I G+
Sbjct: 120 ILEEPLIINTKL-SAKERREKVLSMMEKVGLR--AEFYDRYPHMFSGGQRQRIAIARGLM 176
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
+P +++ADEP +ALDV+++AQ+L+L+ ++++ + + I+H+L VV AD V VMY
Sbjct: 177 LDPDVVVADEPVSALDVSVRAQVLNLMMDLQDELGLSYVFISHDLSVVEHIADEVMVMYL 236
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVP--NPLTKIEKLEAIPGTVPNLITPPGGCRFH 298
G+ +E GT +QIF NP HPYT+ LL A P +P + E+++ + G +P+ I PP GC F+
Sbjct: 237 GRCIEKGTTEQIFSNPQHPYTKALLSATPRLSPNLRRERIK-LTGELPSPINPPKGCAFN 295
Query: 299 PRCPKVMSICKEKVPELKEIEPGHFVAC 326
PRC K C+E P L++ G +AC
Sbjct: 296 PRCWKATEKCRENQPHLEQHTDGKLIAC 323
>sp|P45051|OPPF_HAEIN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|1075085|pir||B64184 oligopeptide transport
ATP-binding protein oppF - Haemophilus influenzae
(strain Rd KW20) >gi|1574675|gb|AAC22774.1| (U32792)
oligopeptide ABC transporter, ATP-binding protein (oppF)
[Haemophilus influenzae Rd]
Length = 332
Score = 217 bits (546), Expect = 2e-55
Identities = 124/323 (38%), Positives = 191/323 (58%), Gaps = 21/323 (6%)
Query: 10 QVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIV 69
+++N F+ +KA++ VSF +Y GET +VGE+GCGKS +RAI L+E+
Sbjct: 21 KIKNDKSLFFAKPQTLKAVKDVSFKLYAGETLGVVGESGCGKSTLARAIIGLVEAS---- 76
Query: 70 EGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEV- 128
EG++L+ L K S ++ ++ R +I IFQDP ASL+P +G IAE +++
Sbjct: 77 EGEILWLGKH-----LRKQSAKQWKETR-KDIQMIFQDPLASLNPRMNIGEIIAEPLKIY 130
Query: 129 --HGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
H +KE +Q + LK L+P+ +N YPHE SGG QR+ I + P+++
Sbjct: 131 QPHLSAAEVKEKVQAMM--LKVGLLPN---LINRYPHEFSGGQCQRIGIARALIIEPKMI 185
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
I DEP +ALDV+IQAQ+++LL ++++ ++I I H+L VV +DRV VMY G +E+
Sbjct: 186 ICDEPVSALDVSIQAQVVNLLKSLQKEMGLSLIFIAHDLAVVKHISDRVLVMYLGNAMEL 245
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEK---LEAIPGTVPNLITPPGGCRFHPRCPK 303
G+ +++ + HPYT+ L+ AVP P K+E+ +E + G +P+ I PP GC F RC K
Sbjct: 246 GSDVEVYNDTKHPYTKALMSAVPIPDPKLERNKSIELLEGDLPSPINPPSGCVFRTRCLK 305
Query: 304 VMSICKEKVPELKEIEPGHFVAC 326
C ++ P HFVAC
Sbjct: 306 ADENCAKQKPPFTSQNNSHFVAC 328
>sp|P77737|OPPF_ECOLI OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|7442535|pir||B64872 oligopeptide transport
ATP-binding protein oppF - Escherichia coli
>gi|1742036|dbj|BAA14779.1| (D90763) Oligopeptide
transport ATP-binding protein OppF. [Escherichia coli]
>gi|1787500|gb|AAC74329.1| (AE000223) homolog of
Salmonella ATP-binding protein of oligopeptide ABC
transport system [Escherichia coli K12]
Length = 334
Score = 216 bits (545), Expect = 2e-55
Identities = 129/332 (38%), Positives = 196/332 (58%), Gaps = 27/332 (8%)
Query: 8 ILQVRNLTVHFYTYAG---------IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
+L++ +L VHF G +KA++ V+ +Y+GET +VGE+GCGKS +RAI
Sbjct: 11 LLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 70
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
L+++ +G V + + LL + +E R +R ++I IFQDP ASL+P T+
Sbjct: 71 IGLVKA----TDGHVAWLGKE-----LLGMKPDEWRAVR-SDIQMIFQDPLASLNPRMTI 120
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKA-VDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
G IAE + + S +E ++ +LK L+P+ +N YPHE SGG QR+ I
Sbjct: 121 GEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPN---LINRYPHEFSGGQCQRIGIAR 177
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
+ P+++I DEP +ALDV+IQAQ+++LL +++ + ++I I H+L VV +DRV V
Sbjct: 178 ALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 237
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEK---LEAIPGTVPNLITPPGG 294
MY G VE+GT D+++ NPLHPYT+ L+ AVP P +EK ++ + G +P+ I PP G
Sbjct: 238 MYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSG 297
Query: 295 CRFHPRCPKVMSICKEKVPELKEIEPGHFVAC 326
C F RCP C + P L E H V+C
Sbjct: 298 CVFRTRCPIAGPECAKTRPVL-EGSFRHSVSC 328
>sp|P08007|OPPF_SALTY OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPF
>gi|72454|pir||QREBOF oligopeptide transport protein
oppF - Salmonella typhimurium >gi|47806|emb|CAA29043.1|
(X05491) Opp F (AA1-334) [Salmonella typhimurium]
Length = 334
Score = 215 bits (543), Expect = 4e-55
Identities = 128/332 (38%), Positives = 196/332 (58%), Gaps = 27/332 (8%)
Query: 8 ILQVRNLTVHFYTYAG---------IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
+L++ +L VHF G +KA++ V+ +Y+GET +VGE+GCGKS +RAI
Sbjct: 11 LLEIADLKVHFDIKEGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 70
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
L+++ +G+V + D LL + +E R++R ++I IFQDP ASL+P T+
Sbjct: 71 IGLVKA----TDGKVAWLGKD-----LLGMKADEWREVR-SDIQMIFQDPLASLNPRMTI 120
Query: 119 GYQIAEAMEV-HGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
G IAE + H K+ + +LK L+P+ +N YPHE SGG QR+ I
Sbjct: 121 GEIIAEPLRTYHPKLSRQDVRDRVKAMMLKVGLLPN---LINRYPHEFSGGQCQRIGIAR 177
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
+ P+++I D+ +ALDV+IQAQ+++LL +++ + ++I I H+L VV +DRV V
Sbjct: 178 ALILEPKLIICDDAVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 237
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNP---LTKIEKLEAIPGTVPNLITPPGG 294
MY G VE+GT D+++ NPLHPYT+ L+ AVP P L + +K++ + G +P+ I PP G
Sbjct: 238 MYLGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLERNKKIQLLEGELPSPINPPSG 297
Query: 295 CRFHPRCPKVMSICKEKVPELKEIEPGHFVAC 326
C F RCP C + P L E H V+C
Sbjct: 298 CVFRTRCPIAGPECAQTRPVL-EGSFRHAVSC 328
>sp|P36636|SAPD_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|628820|pir||S39588 peptide transport system
ATP-binding protein sapD - Salmonella typhimurium
>gi|414211|emb|CAA52287.1| (X74212) sapD [Salmonella
typhimurium]
Length = 330
Score = 215 bits (543), Expect = 4e-55
Identities = 122/328 (37%), Positives = 195/328 (59%), Gaps = 14/328 (4%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L +RNLT+ F T G VKA+++VS + +GE LVGE+G GKS+ ++AI + +
Sbjct: 2 PLLDIRNLTIEFKTSEGWVKAVDRVSMTLSEGEIRGLVGESGSGKSLIAKAICGVAKDNW 61
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE-- 124
R+ ++ + DD +DLL+LS E RK+ G+ ++ IFQ+P + LDP VG Q+ +
Sbjct: 62 RVTADRMRF--DD---IDLLRLSSRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNI 116
Query: 125 -AMEVHGKI-KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
A G+ + + ++A+++L V I D + ++P+EL+ G Q+V+I I ++N
Sbjct: 117 PAWTYKGRWWQRLGWRKRRAIELLHRVGIKDHKEPMRSFPYELTDGECQKVMIAIALANQ 176
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
PR+LIADEPT +++ T QAQI LL ++ + T++LI+H+L ++++ AD++ V+Y G+
Sbjct: 177 PRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVP---NPLTKIEKLEAIPGTVPNLITPPGGCRFHP 299
VE + P HPYTQ L+RA+P + + +L +PG +P L P GCR P
Sbjct: 237 TVETAPSKDLVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGP 296
Query: 300 RCPKVMSICKEKVPELKEIEPGHFVACH 327
RCP C P L + H ACH
Sbjct: 297 RCPYAQREC-IITPRLTGAK-NHLYACH 322
>pir||F71130 probable oligopeptide transport ATP-binding protein appF -
Pyrococcus horikoshii >gi|3257221|dbj|BAA29904.1|
(AP000003) 323aa long hypothetical oligopeptide
transport ATP-binding protein APPF [Pyrococcus
horikoshii]
Length = 323
Score = 215 bits (543), Expect = 4e-55
Identities = 122/334 (36%), Positives = 188/334 (55%), Gaps = 24/334 (7%)
Query: 6 EPILQVRNLTVHFYTYAGI------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
+ +++V+NLT F + I ++A++ VSF++ K E LVGE+GCGKS + +
Sbjct: 4 DTLIEVKNLTKLFPVTSSILGKKISIRAVDNVSFEIKKNEILGLVGESGCGKSTLGKLLV 63
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
+L+E G VL+ D + KL +++++ R + +FQ+P+ S DP T+
Sbjct: 64 RLLEP----TSGTVLFKGQD-----IYKLRGKKLKEYR-KSVQMVFQNPYTSFDPRLTLF 113
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
IAE + H + +E + A+ + V + P + YPHELSGG QR I I
Sbjct: 114 ENIAEPLYTHKLALNKEEALTLAMQYFEDVGLTPPEDFLMRYPHELSGGQLQRASIARAI 173
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+ P ++ADEPT+ LD ++++ IL+L+ K++++ + + ITH+L ADR+AVMY
Sbjct: 174 ALEPEFIVADEPTSMLDASLRSGILNLIKKLRKELHTSWLFITHDLPSAYYIADRIAVMY 233
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRA----VPNPLTKIEKLEAIPGTVPNLITPPGGC 295
GKIVEIG ++ KNPLHPYTQ LL A P+ K K++ P + G C
Sbjct: 234 LGKIVEIGESKEVLKNPLHPYTQALLEANLPIDPDASLKEPKVKG----EPKPVFETGYC 289
Query: 296 RFHPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
RF PRCP CK++ P L E++ H+VAC LY
Sbjct: 290 RFFPRCPYAFEKCKKEEPPLVEVKKDHYVACWLY 323
>gb|AAA23706.1| (L08399) peripheral membrane protein [Escherichia coli]
Length = 333
Score = 215 bits (542), Expect = 6e-55
Identities = 123/320 (38%), Positives = 196/320 (60%), Gaps = 22/320 (6%)
Query: 6 EPILQVRNLTVHFYTYAG------IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
+P+LQ +L H+ G +VKA++ VSF++ +G+T A+VGE+GCGKS R +T
Sbjct: 10 QPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLT 69
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
+IE P G LYY+ DLLK + + +K+R +I +FQ+P+ SL+P VG
Sbjct: 70 -MIEMP----TGGELYYQGQ----DLLK-HDPQAQKLRRQKIQIVFQNPYGSLNPRKKVG 119
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
+ E + ++ + S ++ +KA+ ++ V + + YPH SGG +QR+ I G+
Sbjct: 120 QILEEPLLINTSL-SKEQRREKALSMMAKVGLK--TEHYDRYPHMFSGGQRQRIAIARGL 176
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+P ++IADEP +ALDV+++AQ+L+L+ ++++ + + I+H+L VV AD V VMY
Sbjct: 177 MLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMY 236
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAVP--NPLTKIEKLEAIPGTVPNLITPPGGCRF 297
G+ VE GT DQIF NP HPYTQ LL A P NP + E+++ + G +P+ + PP GC F
Sbjct: 237 LGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRERIK-LSGELPSPLNPPPGCAF 295
Query: 298 HPRCPKVMSICKEKVPELKE 317
+ RC + C + P+LK+
Sbjct: 296 NARCRRRFGPCTQLQPQLKD 315
>pir||F82242 oligopeptide ABC transporter, ATP-binding protein VC1095 [imported]
- Vibrio cholerae (group O1 strain N16961)
>gi|9655564|gb|AAF94254.1| (AE004190) oligopeptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 336
Score = 214 bits (539), Expect = 1e-54
Identities = 124/332 (37%), Positives = 195/332 (58%), Gaps = 27/332 (8%)
Query: 8 ILQVRNLTVHF---------YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
+L V++L VHF +T +KA++ V+ +Y+GET +VGE+GCGKS +RAI
Sbjct: 14 LLDVKDLKVHFNITPKSAWPWTKPVTLKAVDGVNVRLYEGETLGVVGESGCGKSTFARAI 73
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
L+++ G+V++ D L +E R+ +I IFQDP ASL+P TV
Sbjct: 74 IGLVQA----THGEVVWLGQD------LTRMQEVKRRATRKQIQMIFQDPLASLNPRMTV 123
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGI 177
G IAE ++ S +E + +++ V L+P+ +N YPHE SGG QR+ I
Sbjct: 124 GDIIAEPLQTFYPELSKQEVKDRVKEMMAKVGLLPNV---INRYPHEFSGGQCQRIGIAR 180
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
+ P+++I DEP +ALDV+IQAQ+++LL +++++ +++ I H+L VV +DRV V
Sbjct: 181 ALILKPKMIICDEPVSALDVSIQAQVVNLLKELQKELGLSLVFIAHDLSVVKHISDRVLV 240
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEK---LEAIPGTVPNLITPPGG 294
MY G VE+G ++F NP HPYT+ L+ AVP P IE+ ++ + G +P+ + PP G
Sbjct: 241 MYLGNAVELGVSKELFANPKHPYTKALMSAVPIPDPNIERNKTIQMLEGDLPSPMNPPSG 300
Query: 295 CRFHPRCPKVMSICKEKVPELKEIEPGHFVAC 326
C F RCP+ + C + P +K + H V+C
Sbjct: 301 CVFRTRCPQATAECAKTKPVIKGSDI-HSVSC 331
>pir||C82442 probable peptide ABC transporter, ATP-binding protein VCA0588
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9657999|gb|AAF96490.1| (AE004389) peptide ABC
transporter, ATP-binding protein, putative [Vibrio
cholerae]
Length = 530
Score = 214 bits (539), Expect = 1e-54
Identities = 115/262 (43%), Positives = 164/262 (61%), Gaps = 5/262 (1%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L++ NL+V F E VS + +GET ALVGE+G GKSVT+ AI +L+
Sbjct: 5 VLKIDNLSVGFGIAGQARPVTEGVSLTIARGETLALVGESGSGKSVTANAILRLLPKGSA 64
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+++ D VD L+ SE +R IRG I IFQ+P SL+PL+ +G Q+ E +
Sbjct: 65 HYLSGSIHFGD----VDTLRCSERALRGIRGGRIGMIFQEPMVSLNPLHKIGKQLVETLA 120
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
+H +++ QKA++ L V I P ++N YPHELSGG +QRV+I + + N P +LI
Sbjct: 121 IHRGLRATAAE-QKAIEWLGKVGIRHPEIKINAYPHELSGGERQRVMIAMALINEPELLI 179
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDV++QAQILDLL ++++ ++ ITH+L +V ADRVAVM +G++VE
Sbjct: 180 ADEPTTALDVSVQAQILDLLKSLQQELGMAMLFITHDLSIVRRIADRVAVMQSGQLVETN 239
Query: 248 TVDQIFKNPLHPYTQGLLRAVP 269
+F P HPYTQ L+ A P
Sbjct: 240 ACHTLFAAPAHPYTQQLINADP 261
Score = 163 bits (408), Expect = 3e-39
Identities = 102/280 (36%), Positives = 152/280 (53%), Gaps = 30/280 (10%)
Query: 2 RKVPEP-------ILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGET 47
R VP P +LQ L V F G +KA+ +SF + KG++ LVGE+
Sbjct: 262 RGVPVPTAMDAPTLLQAEKLRVWFPIKGGYFRRTQAYIKAVTDMSFTLAKGQSLGLVGES 321
Query: 48 GCGKSVTSRAITQLIESPGRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQ 106
G GKS T AI +L+ S G I GQ DL L E+ R +++ +FQ
Sbjct: 322 GSGKSTTGMAILKLLASQGAIRFAGQ-----------DLQALKRREMLPYR-SKMQVVFQ 369
Query: 107 DPHASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELS 166
DP+++L+P +V I E + VH ++ + I A+ + + D R + YP+E S
Sbjct: 370 DPYSALNPRMSVAQVIGEGLRVHSQLND--DEIDHAICAVMQEVGLDVDTR-HRYPNEFS 426
Query: 167 GGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLG 226
GG +QR+ I + P ++ DEPT++LD T+QAQ+LDLL +++KY+ T + I+H+L
Sbjct: 427 GGQRQRIAIARALVLKPEFILLDEPTSSLDRTVQAQVLDLLKDLQQKYQLTYLFISHDLA 486
Query: 227 VVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLR 266
V+ VM AG+IVE G +F+NP HPYTQ L+R
Sbjct: 487 VIRALCHHTIVMKAGEIVEHGETQSLFENPSHPYTQQLVR 526
>pir||C72536 probable oligopeptide transport ATP-binding protein APE1576 -
Aeropyrum pernix (strain K1) >gi|5105263|dbj|BAA80576.1|
(AP000062) 377aa long hypothetical oligopeptide
transport ATP-binding protein [Aeropyrum pernix]
Length = 377
Score = 213 bits (538), Expect = 2e-54
Identities = 123/329 (37%), Positives = 193/329 (58%), Gaps = 26/329 (7%)
Query: 25 VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIV----EGQVLYYRDDG 80
VKA++ VSF + +GE F LVGE+GCGK+ T +AI +L+++ G V + +VL +
Sbjct: 47 VKAVDGVSFSIARGEVFCLVGESGCGKTTTGKAILRLVKATGGRVFFKPKKEVLEELERR 106
Query: 81 SV-------VDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIK 133
V VDLL + + + +R E+ ++QDP+ SL+P +T+ + + + +H I
Sbjct: 107 GVKSLGDGFVDLLAVPRRKFKPLR-RELQIVYQDPYGSLNPRFTIKRILEDPLLIHS-IG 164
Query: 134 SIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTT 193
+ +E + +L++V + + ++ YPH+LSGG +QRV I NP +++ADEP +
Sbjct: 165 NAREREEMVARMLEAVKLTPASDFMDRYPHQLSGGQRQRVAIARAFILNPSLVVADEPVS 224
Query: 194 ALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIF 253
LDV+I+A+IL+LL +EK +++ ITH+L V DR+AVMY GKIVE G +I
Sbjct: 225 MLDVSIRAEILELLLGFREKLGTSLLFITHDLAVARYICDRIAVMYLGKIVETGDARRII 284
Query: 254 KNPLHPYTQGLLRAVPNP-LTKIEKLEAIP--GTVPNLITPPGGCRFHPRC-------PK 303
+ P+HPYT+ L+ A+P P + +KL +P G +P+ P GCRFHPRC +
Sbjct: 285 ERPIHPYTKALVAAIPEPDPSNRKKLREVPIKGEIPSAAAIPPGCRFHPRCVEYEQDMDR 344
Query: 304 VMSICKEKVPELK---EIEPGHFVACHLY 329
+ +C K P LK E E V+C Y
Sbjct: 345 LREMCPVKEPPLKRPTEGEEDRRVSCWRY 373
>pir||B69856 oligopeptide transport ATP-binding protein homolog ykfD - Bacillus
subtilis >gi|2632021|emb|CAA05580.1| (AJ002571) YkfD
[Bacillus subtilis] >gi|2633654|emb|CAB13157.1| (Z99110)
similar to oligopeptide ABC transporter (permease)
[Bacillus subtilis]
Length = 327
Score = 213 bits (537), Expect = 2e-54
Identities = 125/319 (39%), Positives = 188/319 (58%), Gaps = 18/319 (5%)
Query: 7 PILQVRNLTVHFYT-YAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
P+L+V L +HF VKA++ V+F + +GETF LVGE+GCGKS R + +L +
Sbjct: 5 PLLEVSQLKMHFDAGKKRTVKAVDGVTFQIREGETFGLVGESGCGKSTLGRVLMRLYQP- 63
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
EG V Y +L LSE+E + ++ IFQDP+ASL+P TV I E
Sbjct: 64 ---TEGSVTYRG-----TNLHALSEKE-QFAFNRKLQMIFQDPYASLNPRMTVREIILEP 114
Query: 126 MEVHGKIKSIKEGIQKAVDILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
ME+H + K + ++L++V L PD R YPHE SGG +QR+ I +S NP
Sbjct: 115 MEIHNLYNTHKARLSVVDELLEAVGLHPDFGSR---YPHEFSGGQRQRIGIARALSLNPE 171
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
++ADEP +ALDV++QAQ+++LL +++++ T + I H+L +V +DR+ VMY G ++
Sbjct: 172 FIVADEPISALDVSVQAQVVNLLKRLQKEKGLTFLFIAHDLSMVKHISDRIGVMYLGHMM 231
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIE-KLEAI--PGTVPNLITPPGGCRFHPRC 301
EI +++ PLHPYT+ LL ++P P ++E K E I G +P+ + PP GC F RC
Sbjct: 232 EITESGTLYREPLHPYTKALLSSIPIPDPELEDKRERILLKGELPSPVNPPSGCVFRTRC 291
Query: 302 PKVMSICKEKVPELKEIEP 320
P+ + VP K+ P
Sbjct: 292 PERCLNVENLVPSFKKSNP 310
>dbj|BAA97046.1| (AB015765) TrkE [Vibrio alginolyticus]
Length = 331
Score = 213 bits (536), Expect = 3e-54
Identities = 123/328 (37%), Positives = 193/328 (58%), Gaps = 14/328 (4%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L +R+LT+ T G+VKA++++S + +GE LVGE+G GKS+ ++AI + +
Sbjct: 2 PLLDIRHLTIEIETPQGLVKAVDRMSLTLNEGEIRGLVGESGSGKSLVAKAIVGVSKDNW 61
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
RI ++ +DLL+L+ +E R++ +IA IFQ+P LDP VG Q+ E++
Sbjct: 62 RITADRMRLGN-----IDLLQLTPKERRRVIARDIAMIFQEPSTCLDPSEEVGRQLIESI 116
Query: 127 E---VHGKI-KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
GK + K ++A+ +L V I D R + +YP+EL+ G Q+V+I + I+
Sbjct: 117 PSRAFEGKWWERFKWRKKQAIALLHKVGIKDHKRLMGSYPYELTDGECQKVMIAMAIATK 176
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P++LIADEPT LD Q+QIL LL++M + T++LI H+L + + A R+ VMY G+
Sbjct: 177 PKLLIADEPTNDLDPITQSQILRLLSRMNQLNNTTILLIGHDLATITQWAGRITVMYCGQ 236
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVP---NPLTKIEKLEAIPGTVPNLITPPGGCRFHP 299
VE +I P HPYT LL+A+P + + +KL+++PG++P L P GCR P
Sbjct: 237 SVESADTSKIIAAPKHPYTDALLKAMPDFNDWVPHKQKLQSLPGSIPPLQHLPIGCRLGP 296
Query: 300 RCPKVMSICKEKVPELKEIEPGHFVACH 327
RCP C E +P + I+ H CH
Sbjct: 297 RCPYAQKQCVE-IPHTRRIK-NHKFNCH 322
>emb|CAA10912.1| (AJ222649) sapD [Erwinia chrysanthemi]
Length = 330
Score = 212 bits (533), Expect = 6e-54
Identities = 119/327 (36%), Positives = 196/327 (59%), Gaps = 14/327 (4%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L++RN+T+ F T G VKA+++VS ++ +GE LVGE+G GKS+ ++AI + + R
Sbjct: 3 LLEIRNVTIEFLTPDGPVKAVDRVSINLNEGEIRGLVGESGSGKSLIAKAICGINKENWR 62
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
I + + DD VD+L+L+ + RK+ + ++ IFQ+P + LDP VG Q+ +++
Sbjct: 63 ITADRFRF--DD---VDMLQLTPPQRRKLVRHNMSMIFQEPQSCLDPSARVGRQLIQSIP 117
Query: 128 ---VHGKI-KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
G+ + ++A+++L V I D + ++P+EL+ G Q+V+I I ++N P
Sbjct: 118 GWTYKGRWWQRFNWRKRRAIELLHRVGIKDHKDVMRSFPYELTEGECQKVMIAIALANQP 177
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
R+LIADEP A++ T QAQI LL+++ + T++LI+H+L +++ ADR+ V+Y G+
Sbjct: 178 RLLIADEPNNAMEATTQAQIFRLLSRLNQNNNTTILLISHDLQTMSKWADRINVLYCGQT 237
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPN---PLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
VE D++ P HPYTQ L+RA+P+ L +L +PG +P+L P GCR PR
Sbjct: 238 VESAVSDELISAPHHPYTQALIRAMPDFGCSLPHKSRLNTLPGAIPSLAHLPVGCRLGPR 297
Query: 301 CPKVMSICKEKVPELKEIEPGHFVACH 327
CP C P + H+ ACH
Sbjct: 298 CPYSQKQCMTAPPLIP--VRNHWYACH 322
>sp|P75552|OPPD_MYCPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN OPPD
>gi|2146480|pir||S73940 oligopeptide transport
ATP-binding protein oppD - Mycoplasma pneumoniae (strain
ATCC 29342) >gi|1674316|gb|AAB96262.1| (AE000058)
oligopeptide transport ATP-binding protein OppD
[Mycoplasma pneumoniae]
Length = 423
Score = 210 bits (530), Expect = 1e-53
Identities = 123/358 (34%), Positives = 194/358 (53%), Gaps = 43/358 (12%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
IL +R+L V F GI++A+ V V KG +VGE+G GKSV ++I + G
Sbjct: 21 ILDIRDLHVSFKVKDGIMQAVRGVDLKVKKGSIVGIVGESGSGKSVCVKSIIGF--NDGA 78
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+++ +++ +D+ K+ + + + RG ++YI QDP SL+P T+G Q+ EA+
Sbjct: 79 KTTAKLMNFKN----IDISKMKKHQWQYYRGTYVSYISQDPLFSLNPTMTIGRQVKEAIY 134
Query: 128 VHGK------------------------------------IKSIKEGIQ-KAVDILKSVL 150
V K K+ K + K ++IL +
Sbjct: 135 VSCKRRYYQTKSDLKYDLQTERIDLDTYKEKLAQAKETYKAKTTKAAVHAKTLEILNFIG 194
Query: 151 IPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKM 210
I +R+ +P E SGGM+QR+VI I ++ P ++IADEPTTALDVTIQA+ L+L+ ++
Sbjct: 195 IDQAEKRLKAFPSEFSGGMRQRIVIAIAVATEPDLIIADEPTTALDVTIQAKALNLIKQL 254
Query: 211 KEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPN 270
++ T+I I+HN+ ++A D V VMYAG++VE G V++IF NP+HPYT L+ ++P
Sbjct: 255 RDLLNITIIFISHNISLIANFCDFVYVMYAGRLVEKGLVEEIFTNPVHPYTWALMASIPE 314
Query: 271 PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGHFVACHL 328
K L +IPG +PN+++PP G F R ++I E P ++ H A L
Sbjct: 315 GTDKNAPLTSIPGYIPNMLSPPKGDAFAARNQFALAIDFEHQPPFFDVTETHKAATWL 372
>sp|P36635|SAPD_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|7445933|pir||F64877 peptide transport system
ATP-binding protein sapD - Escherichia coli
>gi|1279403|emb|CAA65940.1| (X97282) SapD protein
[Escherichia coli] >gi|1742104|dbj|BAA14844.1| (D90766)
Peptide transport system ATP-binding protein SapD
(fragment). [Escherichia coli]
>gi|1742113|dbj|BAA14852.1| (D90767) Peptide transport
system ATP-binding protein SapD (fragment). [Escherichia
coli] >gi|1742122|dbj|BAA14861.1| (D90768) Peptide
transport system ATP-binding protein SapD (fragment).
[Escherichia coli] >gi|1787548|gb|AAC74373.1| (AE000227)
putative ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 330
Score = 210 bits (529), Expect = 2e-53
Identities = 121/328 (36%), Positives = 194/328 (58%), Gaps = 14/328 (4%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L +RNLT+ F T VKA+++VS + +GE LVGE+G GKS+ ++AI + +
Sbjct: 2 PLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNW 61
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE-- 124
R+ ++ + DD +DLL+LS E RK+ G+ ++ IFQ+P + LDP VG Q+ +
Sbjct: 62 RVTADRMRF--DD---IDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNI 116
Query: 125 -AMEVHGKI-KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
A G+ + ++A+++L V I D + ++P+EL+ G Q+V+I I ++N
Sbjct: 117 PAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
PR+LIADEPT +++ T QAQI LL ++ + T++LI+H+L ++++ AD++ V+Y G+
Sbjct: 177 PRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVP---NPLTKIEKLEAIPGTVPNLITPPGGCRFHP 299
VE ++ P HPYTQ L+RA+P + + +L +PG +P L P GCR P
Sbjct: 237 TVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGP 296
Query: 300 RCPKVMSICKEKVPELKEIEPGHFVACH 327
RCP C P L + H ACH
Sbjct: 297 RCPYAQREC-IVTPRLTGAK-NHLYACH 322
>gb|AAK42735.1| Dipeptide ABC transporter ATP binding protein (dppF-3) [Sulfolobus
solfataricus]
Length = 323
Score = 210 bits (528), Expect = 2e-53
Identities = 122/307 (39%), Positives = 179/307 (57%), Gaps = 29/307 (9%)
Query: 25 VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVD 84
V+A++ VS ++ KGE +VGE+G GK+ + + L + G G +++
Sbjct: 35 VRALDNVSVEIRKGEVLGVVGESGSGKTTLGKVLATLEKPTG----GNLIFMG------- 83
Query: 85 LLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEV--HGKIKSIKEGIQKA 142
+++++ I +R I +FQ+P S++P V + EAM+ ++K + E +
Sbjct: 84 -MEVNDRNINHVR-KHIHMVFQNPMTSINPRMKVKDIVREAMKEKREERVKKLLEEVGLD 141
Query: 143 VDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQ 202
+ +K + YP ELSGG QRV I ++ P LI DEPT+ALD ++QAQ
Sbjct: 142 YNYVK-----------DKYPRELSGGQTQRVAIARALAKEPDFLILDEPTSALDASVQAQ 190
Query: 203 ILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQ 262
IL+LL ++++ K T + ITHN+ V +DRV +MYAGKIVE G ++ P+HPYTQ
Sbjct: 191 ILNLLVDLQKERKLTYLFITHNIAVARYISDRVIIMYAGKIVEEGNTKEVISEPMHPYTQ 250
Query: 263 GLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGH 322
LL +VP L K ++L+ G VP+LI PP GCRF+PRCP MS+CKEK P L EI G
Sbjct: 251 SLLSSVPE-LGK-KELKPPSGEVPSLINPPSGCRFNPRCPFAMSVCKEKEPPLVEIN-GR 307
Query: 323 FVACHLY 329
VAC LY
Sbjct: 308 KVACWLY 314
>gb|AAF28110.1|AF153317_2 (AF153317) SapD [Shigella dysenteriae]
Length = 330
Score = 208 bits (525), Expect = 6e-53
Identities = 121/328 (36%), Positives = 193/328 (57%), Gaps = 14/328 (4%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L +RNLT+ F T VKA+++VS + +GE LVGE+G GKS+ ++AI + +
Sbjct: 2 PLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNW 61
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE-- 124
R+ ++ + DD +DLL LS E RK+ G+ ++ IFQ+P + LDP VG Q+ +
Sbjct: 62 RVTADRMRF--DD---IDLLGLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNI 116
Query: 125 -AMEVHGKI-KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
A G+ + ++A+++L V I D + ++P+EL+ G Q+V+I I ++N
Sbjct: 117 PAWTYKGRWWQRFVWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
PR+LIADEPT +++ T QAQI LL ++ + T++LI+H+L ++++ AD++ V+Y G+
Sbjct: 177 PRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVP---NPLTKIEKLEAIPGTVPNLITPPGGCRFHP 299
VE ++ P HPYTQ L+RA+P + + +L +PG +P L P GCR P
Sbjct: 237 TVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGP 296
Query: 300 RCPKVMSICKEKVPELKEIEPGHFVACH 327
RCP C P L + H ACH
Sbjct: 297 RCPYAQREC-IVTPRLTGAK-NHLYACH 322
>gb|AAK43146.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 331
Score = 208 bits (524), Expect = 7e-53
Identities = 116/321 (36%), Positives = 181/321 (56%), Gaps = 7/321 (2%)
Query: 9 LQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRI 68
+ V+NL V + + GI+K + VS D+ + + + GE+G GKS + I + P +
Sbjct: 6 ISVKNLNVGYLSDYGIIKVLRNVSIDIPESKIIGVAGESGSGKSTLATTIMGFVNPPLYV 65
Query: 69 VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEV 128
G ++ S D+L +S +E+ KIRG+ I+Y+ Q SL+P+ V + ++
Sbjct: 66 ERGSIIV----DSKYDILSMSRDELNKIRGSVISYVPQAAQNSLNPIRKVKETFTDILKA 121
Query: 129 HGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIA 188
G I + L+ V + D + ++ YP +LSGGMKQRVVI I + NP+ILI
Sbjct: 122 KGM--DYYANIDVVYNTLEEVGLTD-RQVLDMYPFQLSGGMKQRVVIAISLLLNPKILIM 178
Query: 189 DEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGT 248
DEPTT LDV +Q +IL LL K++++ T+++I+H++ ++ + +D +AVMY G+IVE G
Sbjct: 179 DEPTTGLDVVVQYEILKLLKKIQKEKDLTLVVISHDIAMLFQISDYIAVMYGGQIVEYGK 238
Query: 249 VDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSIC 308
+ + + HPYT LL +VP ++ +KL IPG I P GC F RCP V S C
Sbjct: 239 YNTLLEEAYHPYTYLLLSSVPTVRSRGKKLPRIPGDFEGFIRYPKGCVFSSRCPFVTSTC 298
Query: 309 KEKVPELKEIEPGHFVACHLY 329
KE P++ + F C Y
Sbjct: 299 KEVPPQIVAYDKFGFYKCIRY 319
>pir||T03431 probable transport protein accB - Agrobacterium tumefaciens plasmid
pTiC58 >gi|3153178|gb|AAC17198.1| (AF010180) AccB
[Agrobacterium tumefaciens]
Length = 321
Score = 207 bits (521), Expect = 2e-52
Identities = 121/321 (37%), Positives = 179/321 (55%), Gaps = 18/321 (5%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L VR+L V A + I VSF + G+T LVGE+GCGKS+T AI + + P
Sbjct: 13 LLTVRDLIVQ--VPARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKAL--PRG 68
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
I + D G D IA I+QDP +SL+P++++GY + ++
Sbjct: 69 ISQTGGTIELDSGPKAD------------GKPAIAMIYQDPTSSLNPVHSIGYYLESSLY 116
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
H ++ + +A+ +L+ V I R+ +YPHE SGGM QRV+I ++ P+++I
Sbjct: 117 RHQGLEG-NDARLEAMRLLERVGIDRAKSRLRSYPHEYSGGMNQRVMIAHALAAKPKLMI 175
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDVT QAQIL LL +++ + +++++H+LGV+A ADR AVMY GKIVE
Sbjct: 176 ADEPTTALDVTTQAQILHLLEELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETA 235
Query: 248 TVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
V ++ + HPY + L+ +P +E IPG+VP L P GC +HPRCP+
Sbjct: 236 PVAELLERAAHPYARALIGCMPTIDADDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASE 295
Query: 307 ICKEKVPELKEIEPGHFVACH 327
C P + H AC+
Sbjct: 296 QCSVSFPGPVNVGAFHDAACY 316
>pir||S75333 oligopeptide transport protein oppF - Synechocystis sp. (strain
PCC 6803) >gi|1652324|dbj|BAA17247.1| (D90904)
oligopeptide transport ATP-binding protein OppF
[Synechocystis sp.]
Length = 650
Score = 206 bits (520), Expect = 2e-52
Identities = 130/322 (40%), Positives = 185/322 (57%), Gaps = 39/322 (12%)
Query: 8 ILQVRNLTVHFYTYAGIVK--AIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
IL VR L + F K A++ V F++ +GE +VGE+G GKSVTS I L+ P
Sbjct: 38 ILAVRQLEIAFPDADTREKLLAVKGVDFELERGEILGIVGESGSGKSVTSLGIMGLVPKP 97
Query: 66 GRIVEGQVL--YYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
G + + + + S V+L+ L E + R+ RG +IA IFQ+P +SL+P+YT+G+QI
Sbjct: 98 GWVEPSSEIDFFAQAQSSPVNLVALPEGDKRQYRGGKIAMIFQEPMSSLNPVYTIGFQII 157
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLI----------------PDPARRVNN------- 160
EA+ +H + +E +A+ +L+ V + P +V
Sbjct: 158 EAIRLHQNVTQ-EEAQNQAIALLQEVRVLPKDEVLEEEFLAQEQAQPRGKVTQNLASYIQ 216
Query: 161 ---------YPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKM- 210
YPHELSGG QRV+I + IS NPR+LIADEPTTALDVT+QA+IL LL +
Sbjct: 217 QRKQSFLKRYPHELSGGQLQRVMIAMAISANPRLLIADEPTTALDVTVQAEILRLLRDLC 276
Query: 211 KEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPN 270
K+ + ++I I+H+LGV+ E ADRVAVMY G+IVE G +QI +P HPYT+GLL P
Sbjct: 277 KQHQEMSLIFISHDLGVINEIADRVAVMYRGEIVEQGLKEQILHSPQHPYTKGLLACRPR 336
Query: 271 PLTKIEKLEAIPGTVPNLITPP 292
+++ L + G N PP
Sbjct: 337 LEIQLDHLPTV-GDFLNADGPP 357
Score = 187 bits (469), Expect = 2e-46
Identities = 106/269 (39%), Positives = 165/269 (60%), Gaps = 16/269 (5%)
Query: 7 PILQVRNLTVHF-----YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
P+L+V+NLTV + + + KA+ VSF VY GET LVGE+GCGKS +RA+ +L
Sbjct: 380 PLLEVQNLTVSYGQGGLFGKKSVFKAVNDVSFQVYPGETLGLVGESGCGKSTLARALLRL 439
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
I G++++ DG V L ++ R++R E+ IFQ+P+ SL+P T+G
Sbjct: 440 TP----IQTGRIIF---DGQNVAALPEKSQQWRRLR-REMQIIFQNPYNSLNPRMTIGRA 491
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
I E + +H +S K+ Q+ ++L+ V I + N YPHELSGG +QR+ I ++
Sbjct: 492 IQEPLIIHEPKQSTKQQRQRVAELLERVGISP--QWFNRYPHELSGGQRQRICIARALAL 549
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
NPR +I DE +ALDV++QAQ+L+LL +++ + T I I+H+L VV DR+ VM G
Sbjct: 550 NPRFIICDESVSALDVSVQAQVLNLLKELQRDLQLTYIFISHDLSVVRFMGDRIMVMNRG 609
Query: 242 KIVE-IGTVDQIFKNPLHPYTQGLLRAVP 269
++ E I T +I +NP YT+ L++++P
Sbjct: 610 QLAEPINTAQEIIENPQSAYTKKLIQSIP 638
>pir||H70788 probable peptidetransport system ABC-transporter ATP-binding
protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2960087|emb|CAA17985.1| (AL022121) dppD
[Mycobacterium tuberculosis]
Length = 548
Score = 205 bits (515), Expect = 8e-52
Identities = 110/264 (41%), Positives = 167/264 (62%), Gaps = 11/264 (4%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L V L V F T A A+ V V G+T A+VGE+G GKS T+ AI L+ + G
Sbjct: 7 PLLSVEGLEVTFGTDA---PAVCGVDLAVRSGQTVAVVGESGSGKSTTAAAILGLLPAGG 63
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
RI G+V++ DG D+ + +R IRG EI Y+ QDP +L+P++ VG+Q+ EA+
Sbjct: 64 RITAGRVVF---DGR--DITGADAKRLRSIRGREIGYVPQDPMTNLNPVWKVGFQVTEAL 118
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
+ ++ + ++AV++L +PDPA++ YPH+LSGGM QR +I IG++ PR+L
Sbjct: 119 RANTDGRAAR---RRAVELLAEAGLPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLL 175
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
IADEPT+ALDVT+Q Q+LD L + ++ ++LITH+L + A+ A+ V V+ G +VE
Sbjct: 176 IADEPTSALDVTVQRQVLDHLQGLTDELGTALLLITHDLALAAQRAEAVVVVRRGVVVES 235
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPN 270
G I ++P H YT+ L+ A P+
Sbjct: 236 GAAQSILQSPQHEYTRRLVAAAPS 259
Score = 153 bits (384), Expect = 2e-36
Identities = 88/246 (35%), Positives = 146/246 (58%), Gaps = 16/246 (6%)
Query: 26 KAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVDL 85
+A++ VSF + + T A+VGE+G GKS +R + L++ G V++ DG+ D+
Sbjct: 305 RAVDGVSFRLPRASTLAIVGESGSGKSTLARMVLGLLQP----TSGTVVF---DGTY-DV 356
Query: 86 LKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVH--GKIKSIKEGIQKAV 143
L+ +++ R + +FQ+P++SLDP+Y+V I E + VH G + + +++ V
Sbjct: 357 GALARDQVLAFR-RRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGDRRQRQRAVRELV 415
Query: 144 DILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQI 203
D + P+ + P ELSGG +QRV I ++ P +L+ DE +ALDV +QAQI
Sbjct: 416 D-----QVALPSSILGRRPRELSGGQRQRVAIARALALRPEVLVCDEAVSALDVLVQAQI 470
Query: 204 LDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQG 263
LDLL ++ T + I+H+L V+ + AD V VM AG++VE + +++F P H YT+
Sbjct: 471 LDLLADLQADLGLTYLFISHDLAVIRQIADDVLVMRAGRVVEHASTEEVFSRPRHEYTRQ 530
Query: 264 LLRAVP 269
LL+A+P
Sbjct: 531 LLQAIP 536
>gi|10954941 Probable accB [Agrobacterium tumefaciens]
>gi|6498294|dbj|BAA87746.1| (AB016260) Probable accB
[Agrobacterium tumefaciens]
Length = 321
Score = 205 bits (515), Expect = 8e-52
Identities = 120/321 (37%), Positives = 182/321 (56%), Gaps = 18/321 (5%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L VR+L V A + I VSF + G+T LVGE+GCGKS+T AI + + P
Sbjct: 13 LLTVRDLVVQ--VPARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKAL--PRG 68
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
I + G ++L + + + IA I+QDP +SL+P++++GY + ++
Sbjct: 69 ISQ--------TGGTIELNSGPKADGKPA----IAMIYQDPTSSLNPVHSIGYYLESSLY 116
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
H ++ + +A+ +L+ V I R+ +YPHE SGGM QRV+I P+++I
Sbjct: 117 RHQGLEG-NDARLEAMRLLERVGIDRAKSRLRSYPHEFSGGMNQRVMIATRSLAKPKLMI 175
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDVT QAQIL LL +++ + +++++H+LGV+A ADR AVMY GKIVE
Sbjct: 176 ADEPTTALDVTTQAQILHLLEELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETA 235
Query: 248 TVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
V ++ ++ HPY + L+ +P +E IPG+VP L P GC +HPRCP+
Sbjct: 236 PVAELLEHAAHPYARALIGCMPTIDADDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASE 295
Query: 307 ICKEKVPELKEIEPGHFVACH 327
C P + H AC+
Sbjct: 296 QCSVSFPGPVNVGAFHDAACY 316
>gb|AAK42789.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 362
Score = 204 bits (514), Expect = 1e-51
Identities = 115/323 (35%), Positives = 196/323 (60%), Gaps = 11/323 (3%)
Query: 8 ILQVRNLTVHFYT-YAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
IL+V NL V + + I+KA+ VSF V KGE ++GE+G GK+ AI + I PG
Sbjct: 45 ILEVHNLNVIYDEGNSRIIKAVNDVSFGVEKGEILGIIGESGSGKTTLISAILRAIRPPG 104
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
+I+ G+V++ + +D+ ++ +E RK+ +I+Y+ Q +L+P+ +
Sbjct: 105 KIISGKVIF-----NGMDIFSMTIDEFRKLLWKDISYVPQASQNALNPVLPISEIFYHEA 159
Query: 127 EVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
HG+ K I++A ++LK V + DPAR + YP +LSGGMKQRV+I + + NP+++
Sbjct: 160 ISHGEADK-KRVIERASELLKLVGL-DPARVLKMYPFQLSGGMKQRVMIALSLLLNPKLI 217
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEI 246
+ DEPT+ALD+ Q +L L+ + ++ T++ +TH++ +A+ A+R+ VMY G ++E
Sbjct: 218 LMDEPTSALDMLNQELLLKLIKNINQEMGVTIVYVTHDILNIAQIANRLLVMYKGYVMEE 277
Query: 247 GTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
G ++I K+PL+PYT L+ ++P+ ++ K+ +P P L++ GC F RC K
Sbjct: 278 GKTEEIIKSPLNPYTSLLVSSIPSLKGEV-KVINVPLDEP-LVSKEKGCPFLARCSKAFG 335
Query: 307 ICKEKVPELKEIEPGHFVACHLY 329
CKE++PE++ + V CHLY
Sbjct: 336 RCKEELPEIRLVY-DRKVRCHLY 357
>pir||B72282 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981773|gb|AAD36295.1|AE001778_16 (AE001778)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 326
Score = 204 bits (514), Expect = 1e-51
Identities = 123/331 (37%), Positives = 199/331 (59%), Gaps = 19/331 (5%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
V E +L VR+L +++ T G VKA++ VSFD+ +GE + GE+GCGKS + L++
Sbjct: 4 VAEVVLDVRDLRIYYRTLYGYVKAVDGVSFDIKRGEILGIAGESGCGKSTLGNGLI-LLK 62
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
P + + G+ + DG +++ LS +E+RK+R +I+ I Q +++P + I
Sbjct: 63 PPMKYMGGEAIL---DGK--NIMALSPKELRKVRYEKISIIPQYAMDAMNPTKKIKQIID 117
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVL-IPDPARRV-NNYPHELSGGMKQRVVIGIGISN 181
+ + HG E ++ D+++ L I + ++V N YP ELSGGMKQR+V+ I
Sbjct: 118 DLLHEHG------ESFERKKDVIEERLEIVNLGKKVLNMYPIELSGGMKQRMVMVISTLM 171
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEK-YKATVILITHNLGVVAETADRVAVMYA 240
NP +LIADE T+ALDV+ Q ++ +L +M+EK ++ ITH+L V+ + AD+V V+YA
Sbjct: 172 NPDVLIADEITSALDVSSQRSVIQMLYEMREKEIMGSLAFITHDLSVLYQIADKVMVLYA 231
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIE--KLEAIPGTVPNLITPPGGCRFH 298
G++ EI ++ I + PLHPYT+ LL ++P + KL+ IPG P+L+ GCRF
Sbjct: 232 GRVAEISPMEDIIQEPLHPYTKMLLSSLPKIGVRYSQTKLKGIPGYPPSLLNIGPGCRFR 291
Query: 299 PRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
RCP C E+ P + +++ G V+C L+
Sbjct: 292 DRCPYAFEKC-EQDPPVFDVD-GRKVSCWLF 320
>pir||E82170 peptide ABC transporter, ATP-binding protein VC1683 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9656199|gb|AAF94833.1| (AE004246) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 204 bits (513), Expect = 1e-51
Identities = 118/328 (35%), Positives = 191/328 (57%), Gaps = 14/328 (4%)
Query: 7 PILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
P+L +R+LT+ T G+VKA++++S + +GE LVGE+G GKS+ ++AI + +
Sbjct: 2 PLLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENW 61
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAM 126
R+ ++ +DLL+L+ E R++ ++A IFQ+P LDP VG Q+ E++
Sbjct: 62 RVTADRMRLGN-----IDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESI 116
Query: 127 EVHGKIKSIKEGI----QKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
E ++A+ +L V I D +++YP+EL+ G Q+V+I + I+
Sbjct: 117 PFRTFEGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAK 176
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P++LIADEPT +D Q+QIL LL++M + +++LI H+L + + ADR+ VMY G+
Sbjct: 177 PKLLIADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQ 236
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKI---EKLEAIPGTVPNLITPPGGCRFHP 299
VE +I P HPYT LL+A+P+ I +KL+++PG++P L P GCR P
Sbjct: 237 SVESAETAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGP 296
Query: 300 RCPKVMSICKEKVPELKEIEPGHFVACH 327
RCP C E VP + ++ H +CH
Sbjct: 297 RCPYAQRQCVE-VPHSRWVK-NHKFSCH 322
>gb|AAA50595.1| (U08186) ATP-dependent oligopeptide transport protein D [Thermotoga
maritima]
Length = 277
Score = 203 bits (511), Expect = 2e-51
Identities = 109/268 (40%), Positives = 169/268 (62%), Gaps = 8/268 (2%)
Query: 6 EPILQVRNLTVHF----YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
E ++ +NL ++ + +VKA++ VS D+ E + + GE+GCGKS +A+ L
Sbjct: 2 ETLISGKNLKAYYVLDLWGSKKVVKAVDNVSLDILPNEIYGIAGESGCGKSTLLKALLAL 61
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
++ P R+++G++LY +G ++ L E IRK+R + I+YI Q L+P+ V
Sbjct: 62 LDPPLRLMDGELLY-NIEGRPTNVTLLKSETIRKLRWSFISYIPQGSMHVLNPVKRVRDT 120
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
E + H K K KE + AV LK + +P+ R +N +PH+LSGGM+QRV I +
Sbjct: 121 FIEILSSHVK-KQTKEFLDLAVQHLKDLGLPE--RVLNMFPHQLSGGMRQRVTIALATVL 177
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
PR++ ADEPTTALDV Q ++ L+ K++ K TV+L+TH++GV A+ R+A+MYAG
Sbjct: 178 KPRVIFADEPTTALDVVAQRAVMQLIRKIQNDLKNTVVLVTHDMGVHAQITTRMAIMYAG 237
Query: 242 KIVEIGTVDQIFKNPLHPYTQGLLRAVP 269
KIVE G +IFKNPLHPYT+ L++++P
Sbjct: 238 KIVEEGPTLEIFKNPLHPYTRYLIQSLP 265
>emb|CAA68076.1| (X99740) oligopeptide transport ATP-binding protein homolog
[Mycoplasma hominis]
Length = 388
Score = 203 bits (510), Expect = 3e-51
Identities = 130/325 (40%), Positives = 185/325 (56%), Gaps = 12/325 (3%)
Query: 8 ILQVRNLTVHF-YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPG 66
IL+VRNL V F + + + V DV++GE LVGE+G GKSVTS+ + + ES G
Sbjct: 44 ILKVRNLHVSFPQGHKKSIHIVRGVDLDVHRGEIIGLVGESGSGKSVTSKTLINVNES-G 102
Query: 67 RIVEGQVLYYRDDGSVVDLLKLSEEEI-RKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
I Q+ +L + +++ + IRG +I YI QDP SL+P TVG Q+ +A
Sbjct: 103 IISADQIQI-----GEYELTNIKKQKYWQYIRGQKIGYIPQDPLTSLNPTRTVGKQLLDA 157
Query: 126 MEVHG--KIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+ + K + E + +LK+ + + YPH LSGGMKQR+VI + ++ P
Sbjct: 158 LNNNEDWKNSTYTEKKNYLIGLLKTFGLRSAEKIFYAYPHTLSGGMKQRIVITMVVALKP 217
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
++IADEPTTALD T+QA +L L +++K ++ILI+HN+ V+A+ D + VMYAG+I
Sbjct: 218 ELIIADEPTTALDPTVQASVLALFEDIRQKMGISIILISHNISVIAKFCDYIYVMYAGRI 277
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
VE GT +IF NP HPYT L+ A+P +K EKL I GT P++ P G F R
Sbjct: 278 VEKGTKQEIFTNPAHPYTWALISAIPE--SKDEKLYTIQGTPPDMANLPLGDPFVYRNDY 335
Query: 304 VMSICKEKVPELKEIEPGHFVACHL 328
+ I K P L I H A L
Sbjct: 336 ALEIDYLKEPPLIPITETHAAATWL 360
>gb|AAK41514.1| Oligo/dipeptide transport, ATP binding protein (dppF-1) [Sulfolobus
solfataricus]
Length = 325
Score = 202 bits (508), Expect = 5e-51
Identities = 118/329 (35%), Positives = 192/329 (57%), Gaps = 24/329 (7%)
Query: 8 ILQVRNLTVHF-----YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
+++V NL V+F +T +VKA++ V+ + + E +VGE+G GK+ R +T +
Sbjct: 14 VVKVENLKVYFTKGGMFTKKYVVKALDGVTLSIKEREIMGVVGESGSGKTTLGR-VTIGL 72
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
+ P G V Y + D +++ K ++I N + I+QDP++S+DP+ V Y +
Sbjct: 73 QKP---TSGNV-YIKADNKEINVNKAKLKDI----SNYVQMIYQDPYSSIDPIMRV-YDV 123
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
+ K+ I + I++A+ L+ P + N ++LSGG +QR+ I I N
Sbjct: 124 LATPLKYKKMSDIDKKIEEAMR-----LVDLPLELLENRVYQLSGGQRQRLSIARAIVVN 178
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P+ ++ADEPTT LD +++ +IL ++ +E + + ITH L + +DR+ V+Y GK
Sbjct: 179 PKYIVADEPTTMLDASLKGEILKIIKDARESKGFSFMYITHELPIAKIISDRIIVLYLGK 238
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVP--NPLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
IVE+G ++I KNPLHPYTQGL+ P +P + +K++ I V +++ P GC F+PR
Sbjct: 239 IVELGNSNEIIKNPLHPYTQGLIEVYPRIDPSLR-DKIKEIKIKV-DIVRPDKGCVFYPR 296
Query: 301 CPKVMSICKEKVPELKEIEPGHFVACHLY 329
CP M CKE+ PELKE+ H+VAC LY
Sbjct: 297 CPFAMPKCKEQEPELKEVSQNHYVACWLY 325
>gb|AAK41519.1| Oligo/dipeptide transport, ATP binding protein . (dppD-2)
[Sulfolobus solfataricus]
Length = 323
Score = 201 bits (507), Expect = 7e-51
Identities = 117/322 (36%), Positives = 185/322 (57%), Gaps = 11/322 (3%)
Query: 9 LQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRI 68
LQVR+L + + G ++AI +V F + KG++ ++GETG GK+ + AI + +
Sbjct: 3 LQVRDLNISYKIGKGSIRAINRVYFQLEKGDSLGVIGETGSGKTTIANAIMRALPENAEY 62
Query: 69 VEGQVLYYRDDGSVVDLLKLSEEEIRK-IRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
G + + D +LK+ +E RK IR +I+ I Q + +P+ VG Q+ + M
Sbjct: 63 -SGSIFFNNKD-----ILKMDQETYRKEIRWKKISIIPQYSMNAFNPIKRVGEQLVKIMM 116
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
+ + ++ + + +P + P ELSGG +QRVVI + +P ++I
Sbjct: 117 ENDSNIDTSKASERIFYLFNQLSLPPEIYK--KLPDELSGGQRQRVVIASALLLDPELVI 174
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDV QA+++ L+ + + T+I ITH++ VVA A +V +YAG+I+E G
Sbjct: 175 ADEPTTALDVINQARVISLIKREIVDKQKTLIYITHDIAVVAGVAKKVLTLYAGEIMEFG 234
Query: 248 TVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMS 306
+IFK PLHPY++GLL +VP+ K++K+ IPG P+L GC F PRC
Sbjct: 235 DSRKIFKEPLHPYSKGLLSSVPDIRFGKVKKVHYIPGDPPDLSKEIKGCPFAPRCSIAKD 294
Query: 307 ICKEKVPELKEIEPGHFVACHL 328
ICK + P+L+ ++ G +VACHL
Sbjct: 295 ICKVEKPKLRYVD-GRYVACHL 315
>dbj|BAA94703.1| (AB026907) dipeptide transporter DppE homolog [Ochrobactrum
anthropi]
Length = 335
Score = 201 bits (505), Expect = 1e-50
Identities = 119/307 (38%), Positives = 170/307 (54%), Gaps = 20/307 (6%)
Query: 22 AGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGS 81
A V+A++ VS V GET LVGE+G GKS RAI L E + G + + DG
Sbjct: 31 ASAVRAVDGVSLSVQAGETLGLVGESGSGKSTIGRAILGLNEP----LSGTIHF---DGR 83
Query: 82 VVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQK 141
S ++R+ + +FQDP++SL+P +G I E + H + K+ + +
Sbjct: 84 PTH----SRRDLRR----RMQMVFQDPYSSLNPRLKIGDAIGEVLRFHSIVP--KQDVDR 133
Query: 142 AVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQA 201
V L S L+ A P E+SGG +QR I ++ P L+ DEP ALDV+IQA
Sbjct: 134 EVRRLLS-LVGLSAAMAERRPREMSGGQRQRAGIARALALRPDFLVLDEPVAALDVSIQA 192
Query: 202 QILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYT 261
QIL+LL ++++ T++ I H LGVV +DR+AV+Y GKI+E+G +F++ HPYT
Sbjct: 193 QILNLLTDLRQELGLTMLFIAHGLGVVRHMSDRIAVLYLGKIMEVGPAHAVFESSRHPYT 252
Query: 262 QGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEP 320
+ LL AVP L K ++ G VP+ + P GCRF RCP ICK + PE+ + P
Sbjct: 253 KALLSAVPEINLVKRQRPPVTQGDVPSPLNVPSGCRFRTRCPVAQDICKTQPPEV-PVGP 311
Query: 321 GHFVACH 327
HF CH
Sbjct: 312 DHFSRCH 318
>dbj|BAB04289.1| (AP001509) oligopeptide ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 276
Score = 200 bits (504), Expect = 2e-50
Identities = 106/269 (39%), Positives = 169/269 (62%), Gaps = 6/269 (2%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
M K +L+VRNL V + G++ ++ + F++ +G+ LVGE+G GK++T +I Q
Sbjct: 1 MIKNDHHVLKVRNLNVKVKSDQGMLPLVQGLQFELKRGKVLGLVGESGSGKTMTCMSILQ 60
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
L++ +EG + + L L E++R IRG EI YI Q+P + P++T+G
Sbjct: 61 LLDRKTTCIEGSIQLQGRE-----LNGLKAEDMRTIRGREIGYIMQNPMNAFSPVFTIGN 115
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
Q E + H ++ ++ + AV +++V +P P+ + YP +LSGGM QRV+I I +
Sbjct: 116 QFIETIRTHTELTK-RQAFELAVASMETVHLPKPSELMRRYPFQLSGGMLQRVMIAISMC 174
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
P ++IADEPTTALDVT Q Q+L L++++ + + ++LI+H+LGV+AE AD VAVM+
Sbjct: 175 LRPSVVIADEPTTALDVTNQLQVLKELDRLRLESDSAILLISHDLGVIAELADEVAVMHK 234
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVP 269
G+IVE V Q+F +P H YT+ LL+A P
Sbjct: 235 GRIVEKADVFQLFDHPQHEYTKKLLQARP 263
>sp|P33916|YEJF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YEJF
>gi|7445954|pir||C64987 probable oligopeptide transport
protein yejF - Escherichia coli
>gi|405909|gb|AAA16379.1| (U00008) yejF [Escherichia
coli] >gi|1788506|gb|AAC75241.1| (AE000307) putative
ATP-binding component of a transport system [Escherichia
coli K12]
Length = 529
Score = 199 bits (502), Expect = 3e-50
Identities = 110/267 (41%), Positives = 167/267 (62%), Gaps = 9/267 (3%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+ +L + NL+V F + + VS + GET ALVGE+G GKSVT+ +I +L+ SP
Sbjct: 3 QTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 66 G-RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
+ G + ++ + LL S++ +R +RGN+IA IFQ+P SL+PL+T+ Q+ E
Sbjct: 63 PVEYLSGDIRFHGES-----LLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE 117
Query: 125 AMEVH-GKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+ +H G + G + ++ L V I A+R+ +YPH+LSGG +QRV+I + + P
Sbjct: 118 VLSLHRGMRREAARG--EILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRP 175
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
+LIADEPTTALDV++QAQIL LL +++ + ++ ITHNL +V + A RVAVM G+
Sbjct: 176 ELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRC 235
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPN 270
VE +F +P HPYTQ LL + P+
Sbjct: 236 VEQNYAATLFASPTHPYTQKLLNSEPS 262
Score = 153 bits (383), Expect = 2e-36
Identities = 99/273 (36%), Positives = 150/273 (54%), Gaps = 25/273 (9%)
Query: 4 VPEP---ILQVRNLTVHFYTYAGIVKAI-------EKVSFDVYKGETFALVGETGCGKSV 53
+PEP +L V L V F GI+K I + +SF + GET LVGE+G GKS
Sbjct: 268 LPEPASTLLDVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKST 327
Query: 54 TSRAITQLIESPGRIV-EGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASL 112
T A+ +LI S G I+ +GQ L L+ ++ IR + I +FQDP++SL
Sbjct: 328 TGLALLRLINSQGSIIFDGQPLQ-----------NLNRRQLLPIR-HRIQVVFQDPNSSL 375
Query: 113 DPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQR 172
+P V I E + VH S + Q+ + ++ V + DP R + YP E SGG +QR
Sbjct: 376 NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMHEVGL-DPETR-HRYPAEFSGGQRQR 433
Query: 173 VVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETA 232
+ I + P ++I DEPT++LD T+QAQIL LL +++K++ + I+H+L VV
Sbjct: 434 IAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALC 493
Query: 233 DRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLL 265
+V ++ G++VE G ++F P YT+ LL
Sbjct: 494 HQVIILRQGEVVEQGPCARVFATPQQEYTRQLL 526
>dbj|BAA15988.1| (D90849) Oligopeptide transport ATP-binding protein OppD.
[Escherichia coli]
Length = 370
Score = 199 bits (502), Expect = 3e-50
Identities = 110/267 (41%), Positives = 167/267 (62%), Gaps = 9/267 (3%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+ +L + NL+V F + + VS + GET ALVGE+G GKSVT+ +I +L+ SP
Sbjct: 3 QTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 66 G-RIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
+ G + ++ + LL S++ +R +RGN+IA IFQ+P SL+PL+T+ Q+ E
Sbjct: 63 PVEYLSGDIRFHGES-----LLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYE 117
Query: 125 AMEVH-GKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+ +H G + G + ++ L V I A+R+ +YPH+LSGG +QRV+I + + P
Sbjct: 118 VLSLHRGMRREAARG--EILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRP 175
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
+LIADEPTTALDV++QAQIL LL +++ + ++ ITHNL +V + A RVAVM G+
Sbjct: 176 ELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQNGRC 235
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPN 270
VE +F +P HPYTQ LL + P+
Sbjct: 236 VEQNYAATLFASPTHPYTQKLLNSEPS 262
>pir||D75142 oligopeptide transport ATP-binding protein appf PAB0631 -
Pyrococcus abyssi (strain Orsay)
>gi|5458364|emb|CAB49853.1| (AJ248285) OLIGOPEPTIDE
TRANSPORT ATP-BINDING PROTEIN APPF [Pyrococcus abyssi]
Length = 322
Score = 198 bits (498), Expect = 8e-50
Identities = 117/330 (35%), Positives = 190/330 (57%), Gaps = 23/330 (6%)
Query: 8 ILQVRNLTVHFYTYAGI-----VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
+L+V+NLT F + G+ V+A++ VSF + +GE +LVGE+G GK+ + I +L+
Sbjct: 2 LLEVQNLTKIFTS--GLIGGYQVRAVDGVSFTINEGEIVSLVGESGSGKTTIGKLILRLL 59
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG--- 119
G++L+ +G D++K S++E++ ++ +FQDP AS +PL+ V
Sbjct: 60 TP----TSGRILF---EGK--DIMKFSKKELKTYYYRKVQAVFQDPFASFNPLHQVDKVF 110
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
+ I ++ + +E I KA++ + +P+ YPH+LSGG QR++I +
Sbjct: 111 HMIFDSYFPDLGREEREEMIDKALEEVGL----NPSEVRGKYPHQLSGGQLQRILIARAL 166
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
PR+LIADE + LD + + +L+LL + ++KY +V+ ITH+L + +D +MY
Sbjct: 167 LLKPRLLIADEAVSMLDASTRIDVLNLLGEFRDKYGTSVLFITHDLALGYYISDSTIIMY 226
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHP 299
G IVE+G +++F NPLHPYT+ LL +VP+ K E P + GCR+ P
Sbjct: 227 RGTIVEMGETEKVFHNPLHPYTKMLLESVPDLNVKWEFKGIEPEKEEGKVWKIKGCRYAP 286
Query: 300 RCPKVMSICKEKVPELKEIEPGHFVACHLY 329
RCPK +C + P L E+E H+VACHLY
Sbjct: 287 RCPKAKDVCFKIRPTLIEVEKNHWVACHLY 316
>pir||D82301 peptide ABC transporter, ATP-binding protein VC0616 [imported] -
Vibrio cholerae (group O1 strain N16961)
>gi|9655049|gb|AAF93782.1| (AE004147) peptide ABC
transporter, ATP-binding protein [Vibrio cholerae]
Length = 331
Score = 197 bits (495), Expect = 2e-49
Identities = 108/309 (34%), Positives = 179/309 (56%), Gaps = 12/309 (3%)
Query: 24 IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVV 83
+++AI VSF +YK ++VGE+G GKS T++ I ++ ++E + +D S
Sbjct: 30 MMRAINDVSFKMYKSRGLSVVGESGSGKSTTAKMIAKMYAPTSGVIEYKGRDIQDIVSRD 89
Query: 84 DLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIK--SIKEGIQK 141
DL+ E + ++QDP SL+P +T+ + IA + +H K+ + KE ++
Sbjct: 90 DLMHYREG---------VQMVWQDPFGSLNPTHTIFHHIARPLLIHKKVTPGNKKELEER 140
Query: 142 AVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQA 201
++L+ V + P YPH+LSGG +QRV + I+ +++ADEPT+ LDV+I+A
Sbjct: 141 VYELLEQVGLIPPKATAAKYPHQLSGGQRQRVNLARNIAVGAEVVLADEPTSMLDVSIRA 200
Query: 202 QILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYT 261
+L+L+ +MK + + +++ ITH++ A+ +AVMY G +VE G D+I +P HPYT
Sbjct: 201 GVLNLMEEMKFERQMSLLYITHDIATARYIAEDLAVMYVGHMVEWGDTDEIIHDPQHPYT 260
Query: 262 QGLLRAVPNPLTKI-EKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEP 320
+ L+ AVP+P I EKLE G +P GC F RC + C+E +PE+ ++
Sbjct: 261 KLLVSAVPDPKKSIHEKLEGNKGEIPLWTPNSVGCPFAGRCLYASAKCREALPEVTQLSD 320
Query: 321 GHFVACHLY 329
HFV C+L+
Sbjct: 321 NHFVRCYLF 329
>gb|AAF73094.1|AF103793_5 (AF103793) ATPase OppF [Listeria monocytogenes]
Length = 325
Score = 195 bits (491), Expect = 5e-49
Identities = 120/330 (36%), Positives = 185/330 (55%), Gaps = 31/330 (9%)
Query: 1 MRKVPEPILQVRNLTVHFYT-YAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
M + E +L++ NL +F A V+A++ +SFD+YKGET LVGE+GCGKS T R I
Sbjct: 1 MTEQREKLLEIHNLKQYFNKGTASEVRAVDDISFDIYKGETLGLVGESGCGKSTTGRTII 60
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
+L ++ G G+V+Y +G V K S +E+ + R ++ IFQDP+ASL+P V
Sbjct: 61 RLYDATG----GEVIY---NGKDVHARK-SRKEMLEFR-RKMQMIFQDPYASLNPRVKVK 111
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
IAE + +HG K+ +E ++ D+L++V + YPHE SGG +QR+
Sbjct: 112 DIIAEGIRIHGLAKTPEETNKQVYDLLETVGLSK--EHAGRYPHEFSGGQRQRIGYRSCA 169
Query: 180 SNNPRILIADEPTTALD---VTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVA 236
+P +IADEP +ALD V+IQAQ+++LL +++++ T + I H+L +V +DR+
Sbjct: 170 CCSPEFIIADEPISALDFLDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMVKYISDRIG 229
Query: 237 VMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCR 296
VMY GK+V++ + ++ PLHPYT+ LL A+P P E+ P G
Sbjct: 230 VMYFGKLVKLAFANDLYHAPLHPYTESLLSAIPLPDPNYERTRVRKTYDPTSHNYKDGDE 289
Query: 297 FHPRCPKVMSICKEKVPELKEIEPGHFVAC 326
+++EI PGHFV C
Sbjct: 290 I----------------KMREIAPGHFVYC 303
>pir||F71163 probable oligopeptide transport ATP-binding protein AppF -
Pyrococcus horikoshii >gi|3256912|dbj|BAA29595.1|
(AP000002) 321aa long hypothetical oligopeptide
transport ATP-binding protein AppF [Pyrococcus
horikoshii]
Length = 321
Score = 192 bits (484), Expect = 4e-48
Identities = 109/307 (35%), Positives = 174/307 (56%), Gaps = 14/307 (4%)
Query: 25 VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVD 84
V+A++ VSF+V +GE +L+GE+G GK+ + I +L++ G++L+ +D
Sbjct: 24 VRAVDDVSFEVGEGEIVSLIGESGSGKTTIGKLILRLLKP----TSGRILFRGED----- 74
Query: 85 LLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG--YQIAEAMEVHGKIKSIKEGIQKA 142
+ E++R+ + +FQDP AS +PL+ V + + + G +E + K
Sbjct: 75 IWSFDREKLRRYYYKNVQAVFQDPFASFNPLHKVDRVFDLVFRNFLRGVAPGEREELIKR 134
Query: 143 VDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQ 202
L+SV + +P + YPH+LSGG QR++I + P +LIADE + LD + +
Sbjct: 135 S--LESVGL-NPGEVLGKYPHQLSGGQLQRILIARALLVEPSLLIADEAVSMLDASTRID 191
Query: 203 ILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQ 262
IL+LL + ++K+ +VI ITH+L + +D++ +MY G+IVE G +++F NPLHPYT+
Sbjct: 192 ILNLLGEFRDKFGTSVIFITHDLALGYYISDKIVIMYRGRIVEWGDAERVFGNPLHPYTR 251
Query: 263 GLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGH 322
LL +VP+ + E P + GCRF PRCP C EK P+ EIE H
Sbjct: 252 MLLESVPDLSVRWEFKGIEPEREEERVYEIKGCRFAPRCPYARKECYEKPPQTIEIEKNH 311
Query: 323 FVACHLY 329
VAC+LY
Sbjct: 312 HVACYLY 318
>pir||T35983 probable peptide transport ATP-binding protein - Streptomyces
coelicolor >gi|4464268|emb|CAB37471.1| (AL035559)
putative peptide transport ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 359
Score = 192 bits (484), Expect = 4e-48
Identities = 122/334 (36%), Positives = 181/334 (53%), Gaps = 31/334 (9%)
Query: 7 PILQVRNLTVHFYTYAGIV--KAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P+L VR L V F G +A++ V D+ +GE ALVGE+GCGK+ +R++ L+
Sbjct: 31 PLLSVRGLHVTFPGRRGAAAARAVDGVDLDIRRGEIVALVGESGCGKTTLARSLLGLVRP 90
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
G G+V + DG+ L S ++ R + QDP SL+P +TV +AE
Sbjct: 91 TG----GRVTF---DGAP---LGYSARALKAYR-RRAQLVLQDPSGSLNPRHTVYDIVAE 139
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
+ +HG + + +A+ ++ L P P R YPHELSGG +QRVVI + P
Sbjct: 140 GLRIHGHAGDERTAVAEALS--RAGLRP-PERFFLRYPHELSGGQRQRVVIAGALVLQPE 196
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
+L+ADEP +LD +++ +IL LL +++ + + +++TH+LG+ ADRVAVMY G+IV
Sbjct: 197 LLVADEPVASLDASVRGEILALLLRLRTELGLSALVVTHDLGLAWNIADRVAVMYLGRIV 256
Query: 245 EIGTVDQIFKNPLHPYTQGLLRAVPN-PLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPK 303
E G V+Q+ P HPYTQ LL +P P + + G P+ PGGCRFH RCP
Sbjct: 257 ETGAVEQVLTAPRHPYTQALLSVLPEAPGAPV----VLTGEPPDPSYIPGGCRFHVRCPV 312
Query: 304 VMS----------ICKEKVPELKEIEPGHFVACH 327
+ S C+ + E+ VACH
Sbjct: 313 LASGEAVRAGVADACRNEELEILRGGDESQVACH 346
>pir||B83389 probable ATP-binding component of ABC transporter PA2061 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9948069|gb|AAG05449.1|AE004632_8 (AE004632) probable
ATP-binding component of ABC transporter [Pseudomonas
aeruginosa]
Length = 536
Score = 192 bits (482), Expect = 6e-48
Identities = 103/267 (38%), Positives = 167/267 (61%), Gaps = 11/267 (4%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L+V NL+V + G + ++ + F + GET ALVGE+G GKS T+ A+ +L+ R
Sbjct: 5 LLRVENLSVAY----GDTQVVKGIDFSLRAGETLALVGESGSGKSQTAHALLRLLPGAAR 60
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
+ G V R DG +LL LS + + IRG I +FQ+P SL+PL +G Q+ E +
Sbjct: 61 L-GGSV---RLDGE--ELLALSPQALLAIRGQRIGMVFQEPMTSLNPLQRIGRQVGEGLR 114
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
+H +++ + +++L+ + P R + YPH+LSGG +QRV++ + ++ P++LI
Sbjct: 115 LHRRLRGAALR-GRVLELLELAGLEQPRRLLEAYPHQLSGGQRQRVMLAMALACEPQLLI 173
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
ADEPTTALDVT+Q ++L+LL ++ + ++LI+H+L +V ADRV VM G+IVE
Sbjct: 174 ADEPTTALDVTVQKRLLELLQSLQRRLGMAILLISHDLNLVRRVADRVCVMRDGQIVEEN 233
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTK 274
+ +F++P HPYT+ L+ A P L +
Sbjct: 234 ACETLFRSPRHPYTRLLIEAEPGGLAE 260
Score = 151 bits (377), Expect = 1e-35
Identities = 87/270 (32%), Positives = 155/270 (57%), Gaps = 20/270 (7%)
Query: 6 EPILQVRNLTVHFYTYAGIVK------AIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
E L+VR L++ + G ++ A+ +VS + +G T +VGE+G GKS +A+
Sbjct: 266 ETCLEVRALSLDYPAPGGWLRRRAGLRAVHEVSLRLRRGSTLGIVGESGSGKSSLGQALL 325
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
+L+ + EGQ+L+ G +D +L + + +R + +FQDP+ SL+P +V
Sbjct: 326 RLLPA-----EGQILF---QGERLD--RLHGKRLLPLR-RQFQAVFQDPYGSLNPRLSVE 374
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
+ E + +HG I E + ++ L+ V + +P + YPHE SGG +QR+ I +
Sbjct: 375 QIVGEGLRIHG-IGDAGERRARVLEALREVGLDEPC--LERYPHEFSGGQRQRIAIARTL 431
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
P +++ DEPT+ALD ++Q Q+++LL +++ ++ + + I+H+L VV A + V+
Sbjct: 432 VLKPALILLDEPTSALDRSVQCQVVELLRRLQRRHGLSYLFISHDLAVVRALAHDILVLK 491
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAVP 269
G++VE G+ +F P HPYT+ LL A+P
Sbjct: 492 DGRVVEQGSAAALFSQPRHPYTRELLGAIP 521
>gb|AAG20448.1| (AE005117) oligopeptide ABC transporter ATP-binding; YkfD
[Halobacterium sp. NRC-1]
Length = 445
Score = 191 bits (480), Expect = 1e-47
Identities = 110/302 (36%), Positives = 179/302 (58%), Gaps = 18/302 (5%)
Query: 6 EPILQVRNLTVHFYT---YAGI-VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
+P+++V +L H+ ++G VKA++ V+F++ +GET LVGE+G GK+ R + QL
Sbjct: 17 QPLVEVTDLKKHYGDGGRFSGPPVKAVDGVNFEIQEGETLGLVGESGSGKTTLGRTLIQL 76
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
+ EG V + DG D+ KL+ ++++ R N +FQDP +SL+ T+G
Sbjct: 77 ETA----TEGTVSF---DGR--DITKLTGSDLKQWRKNA-QIVFQDPDSSLNDRMTIGEI 126
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
+ E ++ H S E + ++L SV + A YPH+ SGG +QR+ I ++
Sbjct: 127 VREPLDAHDW-NSPAERRDRVKELLSSVGLQ--ADHYYRYPHQFSGGQRQRIGIARALAL 183
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
P ++ DEP +ALD ++QA+IL+LL +++++ T + I H+L VV DRVAVMY G
Sbjct: 184 EPEFMVLDEPVSALDASVQAKILNLLEDLQDEFGLTYLFIAHDLSVVRHICDRVAVMYLG 243
Query: 242 KIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLE-AIPGTVPNLITPPGGCRFHPR 300
KI+EIG ++++ + +PYT+ LL A+P P I++ +PG P+ PP GC+F R
Sbjct: 244 KIMEIGETEELYADAKNPYTRSLLSAIPRPDPTIDRNRITLPGAPPSPRNPPAGCQFSTR 303
Query: 301 CP 302
CP
Sbjct: 304 CP 305
>sp|P45288|SAPD_HAEIN PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPD
>gi|1075118|pir||D64134 peptide transport system
ATP-binding protein HI1641 - Haemophilus influenzae
(strain Rd KW20) >gi|1574489|gb|AAC23288.1| (U32837)
peptide ABC transporter, ATP-binding protein (sapD)
[Haemophilus influenzae Rd]
Length = 349
Score = 189 bits (475), Expect = 4e-47
Identities = 113/327 (34%), Positives = 182/327 (55%), Gaps = 14/327 (4%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L + NL + T G +K ++ V+ + +GE LVGE+G GKS+ ++ I I+
Sbjct: 3 LLDICNLNIEIQTSNGRIKIVDGVNLSLNEGEISGLVGESGSGKSLIAKVICNAIKENWI 62
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
I + ++ V+LLKLS + RK+ G EI+ IFQ+P + LDP +G Q+ + +
Sbjct: 63 ITADRFRFHD-----VELLKLSPNKRRKLVGKEISMIFQNPLSCLDPSRKIGKQLIQNIP 117
Query: 128 ----VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+ K ++A+++L V I D + +YP+EL+ G Q+V+I + ++N P
Sbjct: 118 NWTFKNKWWKWFGWKKRRAIELLHRVGIKDHRDIMASYPNELTEGEGQKVMIAMAVANQP 177
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
R+LIADEPT AL+ T Q+ LL+ M + T++L ++++ ++E D+++V+Y G+
Sbjct: 178 RLLIADEPTNALESTTALQVFRLLSSMNQNQGTTILLTSNDIKSISEWCDQISVLYCGQN 237
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPN---PLTKIEKLEAIPGTVPNLITPPGGCRFHPR 300
E + + ++P HPYTQ L+ AVP+ PL KL + GT P L P GCR PR
Sbjct: 238 TESAPTEILIESPHHPYTQALINAVPDFTQPLGFKTKLGTLEGTAPILEQMPIGCRLGPR 297
Query: 301 CPKVMSICKEKVPELKEIEPGHFVACH 327
CP C EK LK + H +CH
Sbjct: 298 CPFAQKKCMEKPRRLKIKQ--HEFSCH 322
>pir||F70141 probable oligopeptide transport ATP-binding protein oppF - Lyme
disease spirochete >gi|2281463|gb|AAC46288.1| (AF000366)
oligopeptide permease homolog F [Borrelia burgdorferi]
>gi|2688242|gb|AAC66721.1| (AE001140) oligopeptide ABC
transporter, ATP-binding protein (oppF) [Borrelia
burgdorferi]
Length = 323
Score = 187 bits (469), Expect = 2e-46
Identities = 117/343 (34%), Positives = 196/343 (57%), Gaps = 39/343 (11%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGI--------VKAIEKVSFDVYKGETFALVGETGCGKS 52
M E IL+V NL F T V A+ VSF+V K +T LVGE+GCGKS
Sbjct: 1 MSSKKEIILKVENLMQTFTTGEDFLFWKNKQKVNAVNNVSFEVEKNKTLGLVGESGCGKS 60
Query: 53 VTSRAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASL 112
T R+I QL G + + + ++ KLS++E+ K + ++ +FQDPH SL
Sbjct: 61 TTLRSIMQLYTP----TSGNIYF-----NGKNITKLSKKELLKTK-KDMQMVFQDPHTSL 110
Query: 113 DPLYTVGYQIAEAMEVHGKIKSI---KEGIQKAVDILKSVLIPDPARRVNNYPHELSGGM 169
DP T+ IAE +E++ + K + K+ I++ V+ L ++ + + YPHE SGG
Sbjct: 111 DPRMTIKEIIAEPLEIYNENKILPKTKQEIEQRVNELTDIVGLHKSM-LTRYPHEFSGGQ 169
Query: 170 KQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVA 229
+QR+ I ++ NP++L+ DE +ALDV+I+AQIL+LL +++++ + + I+H+L VV
Sbjct: 170 RQRIGIARALALNPKLLLLDEAVSALDVSIRAQILNLLKALQKEFNLSYLFISHDLAVVK 229
Query: 230 ETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVP--NP-LTKIEKLEAIPGTVP 286
+D++AVMY G I+E+ + +F NP+HPYT+ L+ ++P NP K + ++ T+
Sbjct: 230 YMSDKIAVMYLGVILELAPRETLFSNPIHPYTKMLIASIPEINPEKRKNKNIKLDEQTLA 289
Query: 287 NLITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
N+ + + + + P+L+E+E HFV+ +L+
Sbjct: 290 NI--------------RKIHLSTQVHPKLEEVEKDHFVSKYLF 318
>pir||E71545 probable oligopeptide transport ATPase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328607|gb|AAC67793.1|
(AE001293) Oligopeptide Transport ATPase [Chlamydia
trachomatis]
Length = 277
Score = 187 bits (469), Expect = 2e-46
Identities = 104/264 (39%), Positives = 160/264 (60%), Gaps = 8/264 (3%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E +L++ NL V + + +S + + ++ ALVGE G GK+ S+A+ +
Sbjct: 3 EDLLKIDNLVVSVKD--SNQRLVNHLSLTIKRCQSMALVGENGSGKTTVSKAVLGFLPDN 60
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
I G++LY S D+ +LS +++ IRG +IA IFQ+ +L P VG QI E
Sbjct: 61 CYIQSGRILY-----SSTDITRLSRRQLQTIRGKKIATIFQNAMGTLTPSMRVGAQIVET 115
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ H + S +E KA ++L+SV I P R + YP ELSGGM QRV I I ++ NP +
Sbjct: 116 LRHHFDM-SKEEAFSKARELLESVHIESPDRCLQLYPFELSGGMCQRVSIAIALATNPEL 174
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
+IADEP+TALD QAQ+L +L ++ + + ++LITHNL +V+E + +A++ G+IVE
Sbjct: 175 IIADEPSTALDSISQAQVLRVLTQIHQNHSTALLLITHNLALVSELCEEMAIIRYGEIVE 234
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVP 269
G V ++ +P HPYTQ L+RA+P
Sbjct: 235 QGPVQELLHSPSHPYTQQLIRAIP 258
>emb|CAC11411.1| (AL445063) oligopeptide transport ATP-binding protein appF related
protein [Thermoplasma acidophilum]
Length = 314
Score = 187 bits (469), Expect = 2e-46
Identities = 118/305 (38%), Positives = 172/305 (55%), Gaps = 24/305 (7%)
Query: 25 VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVD 84
V+A++ VS + G +VGE+G GKS + + L E+P +G+ LY++
Sbjct: 33 VRALDDVSISIMDGNVIGVVGESGSGKSTMGKVMVTL-ETP---TDGE-LYFKGT----- 82
Query: 85 LLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVD 144
++++ E KIR ++ +FQ+P SL+P V ++E + EG K V
Sbjct: 83 --RVTKSEYPKIR-KQVDMVFQNPATSLNPKMKVKDIVSEPLG------HFDEGAIKEV- 132
Query: 145 ILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQIL 204
ILK L D + + ELSGG QRV I + P +L+ DEPT+ALD +IQAQ+L
Sbjct: 133 ILKVGLSYDEVK--DKQSRELSGGQVQRVAIARALMKKPELLVLDEPTSALDESIQAQVL 190
Query: 205 DLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGL 264
+LL ++ +YK T I ITHN+ V +D + V+YAGKIVE G ++ PLHPYTQ L
Sbjct: 191 NLLVDLQTEYKMTYIFITHNILVAKYISDYIVVLYAGKIVEYGPTSEVLSKPLHPYTQLL 250
Query: 265 LRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGHFV 324
L +VP ++ ++ G VP+LI P GCRF+PRCP VM C+++ P L + V
Sbjct: 251 LSSVPT--VDVKDVKPPVGDVPSLINLPQGCRFNPRCPFVMEKCRKEEPPLISQGQNYQV 308
Query: 325 ACHLY 329
AC LY
Sbjct: 309 ACWLY 313
>emb|CAC12446.1| (AL445067) probable oligopeptide ABC transport system, ATP-binding
protein appD [Thermoplasma acidophilum]
Length = 298
Score = 186 bits (468), Expect = 3e-46
Identities = 112/303 (36%), Positives = 174/303 (56%), Gaps = 25/303 (8%)
Query: 35 VYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIR 94
V KG + GE+G GKS ++AI + ++ PG I GQV Y DD D+L+++ E++R
Sbjct: 5 VRKGIILGIAGESGSGKSTLAQAIYRSLKYPGEITSGQV--YLDDQ---DILRINGEDLR 59
Query: 95 KIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHG-KIKSIKEGIQKAVDILKSVLIPD 153
+IR ++I Q +L+P+ + YQ + + HG + + ++ IQ A+ +++
Sbjct: 60 RIRATRFSFIPQAAMNALNPVKRIRYQFYDLLIAHGLQPEKNEDRIQAAIKMVRL----- 114
Query: 154 PARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEK 213
+ ++PHELSGGM+QRVVI + + P ++I DEPTT LDV +Q +IL L ++ +
Sbjct: 115 RENVLESFPHELSGGMRQRVVIAMSLLLRPDLVILDEPTTGLDVLVQHEILKDLKAIQRQ 174
Query: 214 YKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLT 273
T+I ITH+L ++ E AD +A++YAG+IVE G D++ +P HPY LLR++P
Sbjct: 175 SGLTMIFITHDLSILYEIADEIAMIYAGEIVEFGPRDEMLNDPQHPYNFLLLRSMP---- 230
Query: 274 KIEKLEAIPGTVPNLITPPG-------GCRFHPRCPKVMSICKEKVPELKEIEPGHFVAC 326
++ A GT LI PG GC+F+ RCP + C K PEL + HF C
Sbjct: 231 ---RIGAKRGTGYRLIGNPGNFREDFNGCQFYTRCPFSVPQCVSKHPELTSDDGRHFRRC 287
Query: 327 HLY 329
Y
Sbjct: 288 LRY 290
>sp|P18766|AMIF_STRPN OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN AMIF
>gi|98019|pir||S11153 oligopeptide transport protein
amiF - Streptococcus pneumoniae
>gi|47347|emb|CAA35217.1| (X17337) AmiF protein
[Streptococcus pneumoniae]
Length = 308
Score = 185 bits (466), Expect = 5e-46
Identities = 115/322 (35%), Positives = 177/322 (54%), Gaps = 34/322 (10%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E ++++++L + F + A++ +F + KGETF+LVGE+G GK+ RAI L ++
Sbjct: 3 EKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTS 62
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
G +++ DG ++ K E+ IR I IFQDP ASL+ TV Y I+E
Sbjct: 63 N----GDIIF---DGQKINGKKSREQAAELIR--RIQMIFQDPAASLNERATVDYIISEG 113
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ H K +E +K I++ V + A + YPHE SGG +QR+ I + P
Sbjct: 114 LYNHRLFKDEEERKEKVQSIIREVGLL--AEHLTRYPHEFSGGQRQRIGIARALVMQPDF 171
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
+IADEP +ALDV+++AQ+L+LL K +++ T + I H+L VV +DR+AV+Y G IVE
Sbjct: 172 VIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVE 231
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEK---LEAIPGTVPNLITPPGGCRFHPRCP 302
+ +++F NP+HPYTQ LL AVP P +E+ L+ G+ + T
Sbjct: 232 VAETEELFNNPIHPYTQALLSAVPIPDPILERKKVLKVYEGSQHDYETDK---------- 281
Query: 303 KVMSICKEKVPELKEIEPGHFV 324
P + EI PGH+V
Sbjct: 282 ----------PSMVEIRPGHYV 293
>emb|CAA61526.1| (X89237) oligopeptidepermease [Streptococcus pyogenes]
Length = 307
Score = 185 bits (466), Expect = 5e-46
Identities = 117/319 (36%), Positives = 180/319 (55%), Gaps = 28/319 (8%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E +++V++L + F A++ +F + KGETF+LVGE+G GK+ RAI L ++
Sbjct: 3 EKLVEVKDLEISFGEGKKKFGAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTS 62
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
GQ+LY DG V++ K E IR +I IFQDP ASL+ TV Y I+E
Sbjct: 63 S----GQILY---DGKVINGRKSKSEANELIR--KIQMIFQDPAASLNERATVDYIISEG 113
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ K+ +E +K +++ V + + + YPHE SGG +QR+ I + NP
Sbjct: 114 LYNFNLFKTEEERKEKIKNMMAEVGLL--SEHLTRYPHEFSGGQRQRIGIARALVMNPEF 171
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
+IADEP +ALDV+++AQ+L+LL +M+ + T + I H+L VV +DR+AV++ G IVE
Sbjct: 172 VIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVE 231
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
+ +++F NP+HPYTQ LL AVP P +E+ + + +H P
Sbjct: 232 VAETEELFNNPIHPYTQSLLSAVPIPDPILERQKEL-------------VVYH---PDQH 275
Query: 306 SICKEKVPELKEIEPGHFV 324
+K P + EI+P HFV
Sbjct: 276 DYTLDK-PSMVEIKPNHFV 293
>gb|AAG32327.1| (AF305548) oligopeptide permease [Streptococcus pyogenes]
Length = 307
Score = 185 bits (466), Expect = 5e-46
Identities = 117/319 (36%), Positives = 180/319 (55%), Gaps = 28/319 (8%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
E +++V++L + F A++ +F + KGETF+LVGE+G GK+ RAI L ++
Sbjct: 3 EKLVEVKDLEISFGEGKKKFVAVKNANFFIKKGETFSLVGESGSGKTTIGRAIIGLNDTS 62
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
GQ+LY DG V++ K E IR +I IFQDP ASL+ TV Y I+E
Sbjct: 63 S----GQILY---DGKVINGRKSKSEANELIR--KIQMIFQDPAASLNERATVDYIISEG 113
Query: 126 MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRI 185
+ K+ +E +K +++ V + + + YPHE SGG +QR+ I + NP
Sbjct: 114 LYNFNLFKTEEERKEKIKNMMAEVGLL--SEHLTRYPHEFSGGQRQRIGIARALVMNPEF 171
Query: 186 LIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
+IADEP +ALDV+++AQ+L+LL +M+ + T + I H+L VV +DR+AV++ G IVE
Sbjct: 172 VIADEPISALDVSVRAQVLNLLKRMQAEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVE 231
Query: 246 IGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVM 305
+ +++F NP+HPYTQ LL AVP P +E+ + + +H P
Sbjct: 232 VAETEELFNNPIHPYTQSLLSAVPIPDPILERQKEL-------------VVYH---PDQH 275
Query: 306 SICKEKVPELKEIEPGHFV 324
+K P + EI+P HFV
Sbjct: 276 DYTLDK-PSMVEIKPNHFV 293
>pir||E75068 dipeptide abc transporter, ATP-binding protein (dppf) PAB1347 -
Pyrococcus abyssi (strain Orsay)
>gi|5458955|emb|CAB50442.1| (AJ248287) dipeptide ABC
transporter, ATP-binding protein (dppF) [Pyrococcus
abyssi]
Length = 319
Score = 183 bits (460), Expect = 2e-45
Identities = 113/327 (34%), Positives = 177/327 (53%), Gaps = 17/327 (5%)
Query: 8 ILQVRNLTVHFYTYAGI-----VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
+L+V+NLT F + G+ V+A++ V+F + +GE +LVGE+G GK+ + I +LI
Sbjct: 2 LLEVQNLTKIFTS--GLIGGYQVRAVDNVTFSIKEGEIVSLVGESGSGKTTIGKLILRLI 59
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
+ G++L+ +D D KL + ++ +FQDP AS +PLY V
Sbjct: 60 KP----TSGKILFKGEDIWSFDKDKLMNYYYKNVQA-----VFQDPFASFNPLYKVDRVF 110
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
K S E + L+SV + +P + +PH+LSGG QR++I +
Sbjct: 111 DLVFRTFLKNVSDVEKDELVRRALESVGL-NPREILGKFPHQLSGGQLQRILIARALLVE 169
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P +LIADE + LD + + +L+LL + ++ + +VI ITH+L + +D++ +MY G
Sbjct: 170 PSLLIADEAVSMLDASTRIDVLNLLGEFRDNHGTSVIFITHDLALGYYISDKIIIMYRGS 229
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCP 302
IVE G +++F NPLHPYT+ LL +VP+ K E P + GC+F PRC
Sbjct: 230 IVEWGDTEKVFDNPLHPYTKMLLESVPDLNVKWEFKGIEPEREEGKVWELKGCKFAPRCS 289
Query: 303 KVMSICKEKVPELKEIEPGHFVACHLY 329
C + PE E+E H+VACHLY
Sbjct: 290 LAKDKCWKIRPEPVEVEKNHWVACHLY 316
>pir||T35941 probable ABC-type transport systsem ATP-binding protein -
Streptomyces coelicolor >gi|4158200|emb|CAA22763.1|
(AL035206) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 335
Score = 178 bits (448), Expect = 6e-44
Identities = 124/343 (36%), Positives = 174/343 (50%), Gaps = 48/343 (13%)
Query: 7 PILQVRNLTVHFYTYAGI-VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI--- 62
P+L VR L+V F G V A+ FDV GE AL+GE+GCGKSV + A+ L+
Sbjct: 6 PVLSVRGLSVRFLMPGGRRVAAVTDAHFDVAPGECLALIGESGCGKSVLASALLGLLPGN 65
Query: 63 -ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEI-RKIRGNEIAYIFQDPHASLDPLYTVGY 120
++ GR + G + DLL E + R +RG I + Q P A L P+ TV
Sbjct: 66 AQTAGRALLGDL----------DLLAADERTLARTVRGRLIGLVPQSPAAHLTPVRTVRS 115
Query: 121 QIAEAME----VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIG 176
Q+AE + V G K+++E A + PA ++++PHELSGG+ QR
Sbjct: 116 QLAETVAELTGVRGGRKALREAAGAAAERAAF-----PADHLDHHPHELSGGLAQRAATA 170
Query: 177 IGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATV----------ILITHNLG 226
+ + + +L+ADEPTT LD + + +D L + + + V ++ITH+L
Sbjct: 171 LALVGDAPLLLADEPTTGLDRDLVDRTVDELRRHVDDAEGKVARGDAGSRALLMITHDLA 230
Query: 227 VVAETADRVAVMYAGKIVEIGTVDQIF--KNPLHPYTQGLLRAVPNPLTKIEKLEAIPGT 284
A ADRVAVMYAG+IVE+ F P HPY++GLL A+P+ IPG
Sbjct: 231 AAARIADRVAVMYAGRIVELADAGAFFGAPGPRHPYSRGLLDALPD-----RGFTPIPGL 285
Query: 285 VPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGHFVACH 327
P L PGGC F RC + C +P L+ H VACH
Sbjct: 286 PPELGALPGGCAFAARCDRATDAC-AALPPLR-----HAVACH 322
>pir||C72421 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980563|gb|AAD35169.1|AE001694_5 (AE001694)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 320
Score = 177 bits (445), Expect = 1e-43
Identities = 113/342 (33%), Positives = 181/342 (52%), Gaps = 43/342 (12%)
Query: 7 PILQVRNLTVHFYTYAGI-----VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
P+L+++NLT +T I + A++ V+FD+ + E F L GE+GCGK+ T++ I
Sbjct: 2 PLLEIKNLT-KIFTIGSIFSRTRIVAVDNVNFDINEAEIFTLAGESGCGKTTTAKIILGF 60
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
E G+++Y G +D + +E+E R++ EI +FQ+P ++ +PL V
Sbjct: 61 EEP----TSGEIIY---KGRKIDRVHQNEKERRELL-KEIQAVFQNPFSTFNPLRKVDRY 112
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIP---DPARRVNNYPHELSGGMKQRVVIGIG 178
E + G I + +KA +I+K L YP E SGG QR+ I
Sbjct: 113 FYETLFNLG----IADTKKKAEEIIKEKLSAVGISFEEFSEKYPSEFSGGQLQRISIARA 168
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ NP +L+ADEP + +D +++ I++L +KE+Y +V+ ITH+L +DR+AVM
Sbjct: 169 LLTNPSLLVADEPVSMVDASLRMSIVNLFKDLKEQYGVSVLYITHDLTTAYYVSDRIAVM 228
Query: 239 YAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNP-----------LTKIEKLEAIPGTVPN 287
+ G IVE+G +++ P HPYTQ L +VP P L++ E+ E +
Sbjct: 229 FRGNIVELGPAEKVLMEPKHPYTQLLRESVPEPDPKKKWDIRIKLSETEQAEYL------ 282
Query: 288 LITPPGGCRFHPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
GC+F RCPK M IC+++ P E++ G V C LY
Sbjct: 283 ----RQGCKFAGRCPKAMDICRKEPPPYFEVD-GVQVKCWLY 319
>gi|10954710 hypothetical ABC-transporter gene~similar to moaD gene
[Agrobacterium rhizogenes] >gi|8918710|dbj|BAA97775.1|
(AB039932) hypothetical ABC-transporter gene~similar to
moaD gene [Agrobacterium rhizogenes]
>gi|10567374|dbj|BAB16183.1| (AP002086) hypothetical
ABC-transporter gene~similar to moaD gene [Agrobacterium
rhizogenes]
Length = 603
Score = 176 bits (441), Expect = 4e-43
Identities = 107/284 (37%), Positives = 156/284 (54%), Gaps = 17/284 (5%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+PIL V NL+V + ++ V F + GE LVGE G GKSV +RA+ I++P
Sbjct: 3 DPILAVSNLSVDLLRDGSKRRIVDNVDFALQPGEVLGLVGEAGSGKSVLARAMVNAIQAP 62
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
I GQV++ +G D+L L +R IRGN I +I +P SLDP +G+QI E
Sbjct: 63 LDISSGQVIF---EGK--DVLSLDARGLRSIRGNRIGFIGANPMGSLDPRLPIGHQIVE- 116
Query: 126 MEVHGKIKSIKEGIQKA------VDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
K++S++ I KA +D+L V IP P R + P + SGGM QRV+I +
Sbjct: 117 -----KLRSVRPDIGKAEAKEKVLDLLGRVHIPSPRSRFHEAPFQFSGGMMQRVMIVDAL 171
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+ P ++IAD T LDVT+ AQI+ L++ ++E + I+ +L VV++ A+R VM
Sbjct: 172 VSEPSLVIADNITQPLDVTVAAQIIRLIDNLRESLDTAFLFISSSLPVVSKIAERTLVMQ 231
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPG 283
G+IVE G I NP YT+ LL +P+ + EA G
Sbjct: 232 GGRIVEQGETADIAANPQQAYTRALLSRIPSIWKNVSAPEAKDG 275
Score = 164 bits (410), Expect = 2e-39
Identities = 108/307 (35%), Positives = 166/307 (53%), Gaps = 22/307 (7%)
Query: 25 VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVD 84
VKA+ VSF V GE F +VGE+GCGKS +R + L E P G++ + +
Sbjct: 302 VKAVRDVSFTVKAGENFGIVGESGCGKSTLTRLLAWL-EQPNA---GRIAFLGKN----- 352
Query: 85 LLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVD 144
L LS + ++R + QDP+ SL ++ I E + +HG + ++ Q+A +
Sbjct: 353 LSNLSARSLTEMR-KSFQLLLQDPYGSLPAGMSIIRMIEEPLLIHGVAR--RDAEQRAQE 409
Query: 145 ILKSV-LIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQI 203
++ V L D A R+ P LS G +QR+ I + PR+LI DE +ALD QA++
Sbjct: 410 AMREVGLHADLAERL---PVGLSAGQRQRINIARALVLKPRLLILDETLSALDQVEQAEL 466
Query: 204 LDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPYTQG 263
LDL +++ + + I I+H+L +V RVAVMY G+IVE+ +F++P HPYT+
Sbjct: 467 LDLFKRLQAAHGFSYIFISHDLALVRRICHRVAVMYLGRIVELADNKTLFEHPHHPYTRA 526
Query: 264 LLRAVP----NPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIE 319
LL A+P N + L + G P+ I P GC F RCP+ S C++ P L+ +
Sbjct: 527 LLSAMPTLEENRFPGAQYL--LDGEPPSPIHLPVGCSFRSRCPRAQSDCEKTDPMLEGSD 584
Query: 320 PGHFVAC 326
G++ AC
Sbjct: 585 GGNYAAC 591
>pir||A70482 ABC transporter - Aquifex aeolicus >gi|2984331|gb|AAC07852.1|
(AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 169 bits (425), Expect = 3e-41
Identities = 112/334 (33%), Positives = 184/334 (54%), Gaps = 43/334 (12%)
Query: 8 ILQVRNLTVHFYTYAGIVK-----AIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
+L ++NLT + AG ++ A+++VS + +G+ A+VGE+G GKS + I +L
Sbjct: 3 LLSIQNLTKVYKVPAGFLRKKNFFALKEVSLSIKQGDFLAIVGESGSGKSTLGKIILRL- 61
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
E P +G+V + D + + +E RK+ +FQDP +SL+P V +
Sbjct: 62 EKP---TKGKVSFKGKD-----IFSMGKEYTRKVSA-----VFQDPRSSLNPRMKVEEIL 108
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
E + VH ++K KE + K +L+ V + + + P ++SGG QRV I +
Sbjct: 109 EEPLIVH-RVKGRKERVLK---VLQRVRLSEEL--LEKRPLQISGGQAQRVAIARALILE 162
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P +++ADEPT +LDV++Q +IL+L ++ K + +TH++ VV + A+ V V+YAG
Sbjct: 163 PELIVADEPTASLDVSVQEEILELFKELNSK-GISFFFVTHDIRVVEKVANMVGVIYAGI 221
Query: 243 IVEIGTVDQIFKNPLHPYTQGLLRAVP-------NPLTKIEKLEAIPGTVPNLITPPGGC 295
++E+G +++ KNPLHPYT+ LL VP PL +++ E + P GC
Sbjct: 222 LMELGKKEEVLKNPLHPYTKFLLENVPVRHPKDRKPLKYLQEEE--------VSIPEEGC 273
Query: 296 RFHPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
F+PRCP+ M CK K E+ G +AC+LY
Sbjct: 274 PFYPRCPEAMEECK-KFIRRSEVN-GRLLACNLY 305
>pir||B64551 oligopeptide ABC transporter, ATP-binding protein - Helicobacter
pylori (strain 26695) >gi|2313342|gb|AAD07317.1|
(AE000544) oligopeptide ABC transporter, ATP-binding
protein (oppD) [Helicobacter pylori 26695]
Length = 516
Score = 166 bits (416), Expect = 3e-40
Identities = 101/276 (36%), Positives = 162/276 (58%), Gaps = 20/276 (7%)
Query: 8 ILQVRNLT----VHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+L+++NL HF +++ ++ + E A+VGE+G GKS + I +L
Sbjct: 1 MLEIKNLNCVLNAHF--------SLQNINISLNPSERVAIVGESGSGKSSIANIIMRL-N 51
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
+ G+VL+ +LLK SEE ++ +RGN IAYI QDP +SL+PL+ +G Q++
Sbjct: 52 PRFKPHNGEVLF-----ETTNLLKESEEFMQHLRGNAIAYIAQDPLSSLNPLHKIGKQMS 106
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
EA +H K S ++ ++ +K V + + + ++ YP+ELSGG +QRV I +GI N P
Sbjct: 107 EAYFLHYKNASKTLLKEQVLNAMKQVQLDE--KFLDRYPYELSGGQRQRVCIAMGIINAP 164
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
++LI DEPTTALD IQ QILDL ++ + ++ I+H+L V ADRV V+ G+I
Sbjct: 165 KLLICDEPTTALDAQIQNQILDLPKQLSAEKNIALLFISHDLKAVKRLADRVYVLKKGEI 224
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLE 279
VE +F +P H Y++ L++A P ++ L+
Sbjct: 225 VETNLTKDLFNDPKHEYSKLLIQASNLPAKNLKALD 260
Score = 135 bits (336), Expect = 8e-31
Identities = 87/272 (31%), Positives = 152/272 (54%), Gaps = 18/272 (6%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEK-----VSFDVYKGETFALVGETGCGKSVTS 55
++ + E +L+V++ +V++ +++K V+F + E ++GE+G GKS +
Sbjct: 256 LKALDETLLEVKDFSVYYLQKRFFRPSLKKPLIASVNFSLKAKENIGIIGESGSGKSSLA 315
Query: 56 RAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPL 115
+ +L + G E ++L SV L + + RKI + +FQDP+ASL+P
Sbjct: 316 LGLLKLALNSG---EEKIL----GQSVGSLNSKAFKPYRKI----LQMVFQDPYASLNPR 364
Query: 116 YTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVI 175
++ + EA+ S +E A L+ V + +N+Y +ELSGG +QRV I
Sbjct: 365 LSIQSILTEALRFAYPKASKEEWHHLAKLCLEEVCLSHEL--LNSYAYELSGGERQRVAI 422
Query: 176 GIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRV 235
I+ P+I++ DEPT+ALD +IQ +L+LL ++EK + + I+H+L V+ D+V
Sbjct: 423 ARAIALKPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSYLFISHDLDVIKAFCDKV 482
Query: 236 AVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRA 267
V+ GK+VE+ T+ ++F NP H YT+ LL +
Sbjct: 483 LVISEGKVVEMNTIKEVFDNPKHAYTKRLLES 514
>pir||E71957 ABC transporter, ATP-binding protein - Helicobacter pylori (strain
J99) >gi|4154751|gb|AAD05811.1| (AE001461) ABC
transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 516
Score = 165 bits (413), Expect = 8e-40
Identities = 97/272 (35%), Positives = 163/272 (59%), Gaps = 12/272 (4%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L+++NL ++ +++ ++ + E A+VGE+G GKS + + +L +
Sbjct: 1 MLEIKNLNCVLNSHF----SLQNINISLSYSERVAIVGESGSGKSSIANLVMRL-NPRFK 55
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
G++L+ +LLK SE ++ +RGN IAYI QDP +SL+PL+ +G Q++EA
Sbjct: 56 PHNGEILF-----ETTNLLKESEAFMQHLRGNIIAYIAQDPLSSLNPLHKIGKQMSEAYF 110
Query: 128 VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILI 187
+H K S ++ ++ +K V + + + ++ YP+ELSGG +QRV I +GI N P++LI
Sbjct: 111 LHHKNASQVLLKEQVLNAMKQVQLDE--KFLDRYPYELSGGQRQRVCIAMGIINAPKLLI 168
Query: 188 ADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIG 247
DEPTTALD IQ QILDLL ++ + ++ I+H+L V ADRV V+ G+IVE
Sbjct: 169 CDEPTTALDAQIQNQILDLLKQLSVEKNIALLFISHDLKAVKRLADRVYVLKKGEIVETN 228
Query: 248 TVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLE 279
++F +P H Y++ L++A P ++ L+
Sbjct: 229 LTKELFNDPKHEYSKLLIQASNLPAKNLKALD 260
Score = 136 bits (339), Expect = 4e-31
Identities = 91/273 (33%), Positives = 150/273 (54%), Gaps = 20/273 (7%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEK-----VSFDVYKGETFALVGETGCGKSVTS 55
++ + E +L+V++ +V++ +++K V F + E ++GE+G GKS +
Sbjct: 256 LKALDETLLEVKDFSVYYLQKRFFRPSLKKPLIASVDFSLKAKENIGIIGESGSGKSSLA 315
Query: 56 RAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSE-EEIRKIRGNEIAYIFQDPHASLDP 114
+ +L + G E ++L G V LL + RKI + +FQDP+ASL+P
Sbjct: 316 LGLLKLALNSG---EEKIL-----GQSVGLLNSKAFKPYRKI----LQMVFQDPYASLNP 363
Query: 115 LYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVV 174
++ + EA+ S +E A L+ V + +N Y +ELSGG +QRV
Sbjct: 364 RLSIQSILIEALRFAYPKASQQEWHHLAELCLEEVCLNPEL--LNFYAYELSGGERQRVA 421
Query: 175 IGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADR 234
I I+ PRI++ DEPT+ALD +IQ +L+LL ++EK + + I+H+L V+ DR
Sbjct: 422 IARAIALKPRIILLDEPTSALDKSIQKSVLELLLNLQEKQDLSYLFISHDLDVIKAFCDR 481
Query: 235 VAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRA 267
V V+ GKIVE G ++++F NP H YT+ LL +
Sbjct: 482 VLVVSEGKIVETGAIEEVFDNPKHAYTKRLLES 514
>pir||E72393 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4980804|gb|AAD35392.1|AE001712_5 (AE001712)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 316
Score = 164 bits (411), Expect = 1e-39
Identities = 109/332 (32%), Positives = 178/332 (52%), Gaps = 30/332 (9%)
Query: 9 LQVRNLTVHF-----YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+ VRNLT F ++ +V AI+ VSF++ GE F+L GE+GCGK+ T++ + L E
Sbjct: 3 VSVRNLTKIFRVGSIFSLKKLV-AIDNVSFEIGSGEIFSLAGESGCGKTTTAKILLGLEE 61
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
G+VLY DG + L E E+ ++ ++ + Q+P ++ +P V +
Sbjct: 62 P----TNGEVLY---DG--IKLKDFVENEMHFLK--KVQTVQQNPFSTFNPFRKVEDYLF 110
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+ + + K+ + K+ + ++ SV+ + YP E SGG QR+ I + NP
Sbjct: 111 KTV-LRFKMANTKDEALRLIEEKLSVVGLNFDEIKGRYPSEFSGGQLQRISIARALLTNP 169
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
L+ADEP + +D +++ I++L +KE++ +++ ITH+L AD++A+M+ G I
Sbjct: 170 SFLVADEPVSMIDASLRISIVNLFRDLKERFGISILYITHDLSTAYYVADKLAIMFRGSI 229
Query: 244 VEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITP------PGGCRF 297
VE+G I P HPYT+ L ++P P + E E I NL + GC+F
Sbjct: 230 VEMGRAQDILDTPFHPYTKLLKSSIPVPDPEYEWDENI-----NLSSTEREEFFAKGCKF 284
Query: 298 HPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
RCP+VMSIC+E VP ++ G V C LY
Sbjct: 285 ASRCPEVMSICRESVPPDFDVN-GRVVKCWLY 315
>pir||A72284 oligopeptide ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981747|gb|AAD36271.1|AE001776_7 (AE001776)
oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 319
Score = 163 bits (408), Expect = 3e-39
Identities = 110/332 (33%), Positives = 175/332 (52%), Gaps = 24/332 (7%)
Query: 6 EPILQVRNLT----VHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
E L ++NLT + + + A++ VSF + + E F L GE+GCGKS T++ I
Sbjct: 2 EDTLILKNLTKVYSIGSLLFRSKITAVDDVSFSLKRAEIFTLAGESGCGKSTTAKMILGF 61
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
E G +++ + S+ K ++ +RK++ +FQ+P S +PL TV
Sbjct: 62 EEP----TSGDIIF--EGNSIQWWKKRKKDFLRKVQA-----VFQNPFESFNPLLTVDDI 110
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNN-YPHELSGGMKQRVVIGIGIS 180
E + +G S E +K +D K L+ +N Y ELSGG QR I +
Sbjct: 111 FFETVMNYGLANSRNEA-EKLIDE-KLQLVGLKFEDINGRYQSELSGGQLQRASIARSLL 168
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
+NP +LIADEP + +D +++ I++L K++++ +VI ITH+L +DR+A+M+
Sbjct: 169 SNPSLLIADEPVSMVDASLRMSIVNLFAKLRDQLGVSVIYITHDLATAYYVSDRIAIMFR 228
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITP---PGGCRF 297
G IVE G VD++ +P HPYTQ L ++P+P EK + TV + GC+F
Sbjct: 229 GNIVETGPVDKVLIDPKHPYTQLLRESIPDP--DPEKKWSREITVSDTEYEEYLKEGCKF 286
Query: 298 HPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
RCP V IC+ + P+ + G V CH+Y
Sbjct: 287 AGRCPYVKEICRREKPD-DVLVDGVLVKCHIY 317
>gb|AAK42790.1| ABC transporter, ATP binding protein [Sulfolobus solfataricus]
Length = 324
Score = 152 bits (380), Expect = 6e-36
Identities = 103/332 (31%), Positives = 176/332 (52%), Gaps = 27/332 (8%)
Query: 8 ILQVRNLTVHFYTYAGIVK-----AIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
+++++ ++V F G+ K A++ VS + +G+ ++GE+G GK+ R I L
Sbjct: 3 LMELKGVSVIFEDKVGLFKKRKFYALKDVSLSMNQGDLLIVLGESGAGKTTLGRVIVGL- 61
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
+ P G+V+Y DG ++ K + +K R ++ I QDP+++L P +I
Sbjct: 62 QKP---TSGEVVY---DG--YNIWKNKRKIFKKYR-KDVQLIPQDPYSTL-PFNKTVEEI 111
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
A + + + E ++ +++L+ V + + YPH+LSGG KQR+ I +S N
Sbjct: 112 LVAPILRWEKINKDELRKRLINLLELVKLTPAEEFLGKYPHQLSGGQKQRLSIARSLSVN 171
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAE-----TADRVAV 237
PRI++ADEP T +D +++ IL+ L ++K + T++ ITH++ + V
Sbjct: 172 PRIIVADEPVTMVDASLRIGILNTLAEIKNRLNLTMVFITHDIPIARYFYHLFDKGNTIV 231
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRF 297
M+AG+IVE +++I K+PLHPYT L++ P+ I+ L N GC +
Sbjct: 232 MFAGRIVERADLEEILKDPLHPYTNDLIKLTPS----IDNLYKEINVKINYERVEKGCPY 287
Query: 298 HPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
RCP M ICK + P+L + H VAC LY
Sbjct: 288 RLRCPFAMDICKNEEPKL--FKYSHEVACFLY 317
>pir||G72049 peptide ABC transporter, ATP-binding protein CP0064 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376984|gb|AAD18822.1| (AE001650) ABC ATPase
Dipeptide Transport [Chlamydophila pneumoniae CWL029]
>gi|7189001|gb|AAF37953.1| (AE002170) peptide ABC
transporter, ATP-binding protein [Chlamydophila
pneumoniae AR39] >gi|8979055|dbj|BAA98890.1| (AP002547)
ABC ATPase dipeptide transport [Chlamydophila pneumoniae
J138]
Length = 324
Score = 148 bits (369), Expect = 1e-34
Identities = 107/335 (31%), Positives = 172/335 (50%), Gaps = 30/335 (8%)
Query: 5 PEPILQVRNLTVHFYT----YAGIVKA---IEKVSFDVYKGETFALVGETGCGKSVTSRA 57
P+P++Q +LT H+Y + G A ++ VSF +Y L+GE+G GKS + A
Sbjct: 6 PQPLIQATSLTKHYYKRSFWFQGKTIASRPVDDVSFSLYSRRAVGLIGESGSGKSTLALA 65
Query: 58 ITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYT 117
+ L+ + G + + +G+ + KL + R +++ +FQ+P ASL+P T
Sbjct: 66 LAGLLP----LTSGFLTF---NGTPI---KLHSKHGRHQLRSQVRLVFQNPQASLNPRKT 115
Query: 118 VGYQIAEAMEVHGKIKSIKEGIQKAV-DILKSVLIPDPARRVNNYPHELSGGMKQRVVIG 176
+ + ++ H + KE + V + L+ V + + YPH+LSGG +QRV I
Sbjct: 116 ILDSLGHSLLYHKLVP--KEKVLATVREYLELVGLSE--EYFYRYPHQLSGGQQQRVSIA 171
Query: 177 IGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVA 236
+ P+++I DE +ALD++IQAQIL++L ++++K T + I+H+L VV V
Sbjct: 172 RALLGVPQLIICDEIVSALDLSIQAQILNMLAELQKKLSLTYLFISHDLAVVRSFCTEVF 231
Query: 237 VMYAGKIVEIGTVDQIFKNPLHPYTQGLLRA--VPNPLTKIEKLEAIPGTVPNLITPPGG 294
+MY G+IVE G +IF +P HPYT+ LL A P + K + + G
Sbjct: 232 IMYKGQIVEKGNTKRIFSDPQHPYTRMLLNAQLPETPDQRQSKPIFQEYHKDSEESCSTG 291
Query: 295 CRFHPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
C F+ RCP+ CK EI P A H Y
Sbjct: 292 CYFYNRCPQKQEACK------SEIIPNQGDAHHTY 320
>gb|AAF77616.1|AF151721_2 (AF151721) oligopeptide permease subunit AmiF-like protein
[Streptococcus thermophilus]
Length = 238
Score = 146 bits (366), Expect = 2e-34
Identities = 88/249 (35%), Positives = 144/249 (57%), Gaps = 11/249 (4%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+PE +++V+++ + F A+ +F + KGETF+LVGE+G GK+ RAI L +
Sbjct: 1 MPEKLVEVKDVEISFGEGKKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLND 60
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
+ G++++ DG ++ E+ IR I IFQDP ASL+ TV Y ++
Sbjct: 61 TSN----GEIIF---DGKKINGYLSHSEKNDLIR--RIQMIFQDPAASLNERATVDYILS 111
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
E + K +E K +I+K V + + + YPHE SGG +QR+ I + P
Sbjct: 112 EGLYNFHLYKDEEERKAKIKEIIKEVGLLE--EHLTRYPHEFSGGQRQRIGIARSLVMQP 169
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
++IADEP +ALDV+++AQ+L+LL K +++ T + I H+L VV +DR+AV+Y G I
Sbjct: 170 DLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTI 229
Query: 244 VEIGTVDQI 252
VE+ +++
Sbjct: 230 VEVAETEEL 238
>pir||S56325 hisP protein-like nucleotide-binding protein phnK - Escherichia
coli >gi|536941|gb|AAA96996.1| (U14003) HisP-like
nucleotide binding protein (ATP-binding protein)
[Escherichia coli] >gi|1790535|gb|AAC77058.1| (AE000482)
ATP-binding component of phosphonate transport
[Escherichia coli K12]
Length = 252
Score = 141 bits (353), Expect = 8e-33
Identities = 91/268 (33%), Positives = 143/268 (52%), Gaps = 26/268 (9%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+P+L V NLT H Y K VSFD++ GE +VGE+G GK+ TQL
Sbjct: 3 QPLLSVNNLT-HLYAPG---KGFSDVSFDLWPGEVLGIVGESGSGKT------TQLKSIS 52
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
R+ Q + ++ S L +SE + R++ E + Q P L + G I E
Sbjct: 53 ARLTPQQGEIHYENRS---LYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGER 109
Query: 126 MEV-----HGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
+ +G I++ + + V+I PA R+++ P SGGM+QR+ I +
Sbjct: 110 LMATGARHYGDIRATAQKWLEEVEI--------PANRIDDLPTTFSGGMQQRLQIARNLV 161
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
+P+++ DEPT LDV++QA++LDLL + + V+++TH+LGV ADR+ VM
Sbjct: 162 THPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQ 221
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAV 268
G++VE G D++ +P HPYTQ L+ +V
Sbjct: 222 GQVVESGLTDRVLDDPHHPYTQLLVSSV 249
>sp|P16678|PHNK_ECOLI PHOSPHONATES TRANSPORT ATP-BINDING PROTEIN PHNK
>gi|96281|pir||C35719 phnK protein - Escherichia coli
>gi|147206|gb|AAA24349.1| (J05260) HisP-like nucleotide
binding protein (phnK) [Escherichia coli]
>gi|216600|dbj|BAA14271.1| (D90227) ATP-binding protein
[Escherichia coli]
Length = 252
Score = 141 bits (352), Expect = 1e-32
Identities = 88/268 (32%), Positives = 143/268 (52%), Gaps = 26/268 (9%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESP 65
+P+L V NLT H Y K VSFD++ GE +VGE+G GK+ ++I+ +
Sbjct: 3 QPLLSVNNLT-HLYAPG---KGFSDVSFDLWPGEVLGIVGESGSGKTTLLKSISARLTPQ 58
Query: 66 GRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA 125
+G++ Y L +SE + R++ E + Q P L + G I E
Sbjct: 59 ----QGEIHYENRS-----LYAMSEADRRRLLRTEWGVVHQHPLDGLRRQVSAGGNIGER 109
Query: 126 MEV-----HGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
+ +G I++ + + V+I PA R+++ P SGGM+QR+ I +
Sbjct: 110 LMATGARHYGDIRATAQKWLEEVEI--------PANRIDDLPTTFSGGMQQRLQIARNLV 161
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
+P+++ DEPT LDV++QA++LDLL + + V+++TH+LGV ADR+ VM
Sbjct: 162 THPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQ 221
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAV 268
G++VE G D++ +P HPYTQ L+ +V
Sbjct: 222 GQVVESGLTDRVLDDPHHPYTQLLVSSV 249
>sp|P36637|SAPF_ECOLI PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|7445934|pir||E64877 peptide transport system
ATP-binding protein sapF - Escherichia coli
>gi|470683|gb|AAA17671.1| (U08190) Shows similarity with
ATP-binding proteins from other ABC-transport operons,
Swiss Prot Accession Numbers P24137, P08007, P04285,
P24136 [Escherichia coli] >gi|1279404|emb|CAA65941.1|
(X97282) SapF protein [Escherichia coli]
>gi|1742103|dbj|BAA14843.1| (D90766) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1742112|dbj|BAA14851.1| (D90767) Peptide transport
system ATP-binding protein SapF. [Escherichia coli]
>gi|1787547|gb|AAC74372.1| (AE000227) putative
ATP-binding protein of peptide transport system
[Escherichia coli K12]
Length = 268
Score = 129 bits (320), Expect = 6e-29
Identities = 79/271 (29%), Positives = 152/271 (55%), Gaps = 33/271 (12%)
Query: 6 EPILQVRNLTVHFYTYAG-----IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
E +L+VRNL+ F G V+A++ +SF + +G+T A++GE G GKS ++ +
Sbjct: 3 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 62
Query: 61 LIE--SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+IE S +++ L++ D R I IFQDP SL+P
Sbjct: 63 MIEPTSGELLIDDHPLHFGD---------------YSFRSQRIRMIFQDPSTSLNPRQ-- 105
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV----LIPDPARRVNNYPHELSGGMKQRVV 174
+I++ ++ ++ + E Q+ I++++ L+PD V+ YPH L+ G KQR+
Sbjct: 106 --RISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPD---HVSYYPHMLAPGQKQRLG 160
Query: 175 IGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADR 234
+ + P+++IADE +LD+++++Q+++L+ +++EK + I +T ++G++ +D+
Sbjct: 161 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQ 220
Query: 235 VAVMYAGKIVEIGTVDQIFKNPLHPYTQGLL 265
V VM+ G++VE G+ + +PLH T+ L+
Sbjct: 221 VLVMHQGEVVERGSTADVLASPLHELTKRLI 251
>sp|P36638|SAPF_SALTY PEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN SAPF
>gi|628821|pir||S39589 peptide transport system
ATP-binding protein sapF - Salmonella typhimurium
>gi|414212|emb|CAA52288.1| (X74212) sapF [Salmonella
typhimurium]
Length = 268
Score = 126 bits (313), Expect = 4e-28
Identities = 79/271 (29%), Positives = 150/271 (55%), Gaps = 33/271 (12%)
Query: 6 EPILQVRNLTVHFYTYAG-----IVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
E +L+VRNL+ F G V A++ +SF + + +T A++GE G GKS ++ +
Sbjct: 3 ETLLEVRNLSKTFRYRTGWFRRQTVDAVKPLSFTLRERQTLAIIGENGSGKSTLAKMLAG 62
Query: 61 LIE--SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+IE S +++ L+Y D R I IFQDP SL+P
Sbjct: 63 MIEPTSGELLIDDHPLHYGD---------------YSFRSQRIRMIFQDPSTSLNPRQ-- 105
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSV----LIPDPARRVNNYPHELSGGMKQRVV 174
+I++ ++ ++ + E Q+ I++++ L+PD V+ YPH L+ G KQR+
Sbjct: 106 --RISQILDFPLRLNTDLEPEQRRKQIVETMRMVGLLPD---HVSYYPHMLAPGQKQRLG 160
Query: 175 IGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADR 234
+ + P+++IADE +LD+++++Q+++L+ +++EK + I +T ++G++ +D+
Sbjct: 161 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHISDQ 220
Query: 235 VAVMYAGKIVEIGTVDQIFKNPLHPYTQGLL 265
V VM+ G++VE G+ + +PLH T+ L+
Sbjct: 221 VLVMHQGEVVERGSTADVLASPLHELTRRLI 251
>gi|11498955 phosphate ABC transporter, ATP-binding protein (pstB)
[Archaeoglobus fulgidus] >gi|7442554|pir||F69419
phosphate ABC transporter, ATP-binding protein (pstB)
homolog - Archaeoglobus fulgidus
>gi|2649216|gb|AAB89887.1| (AE001010) phosphate ABC
transporter, ATP-binding protein (pstB) [Archaeoglobus
fulgidus]
Length = 251
Score = 121 bits (300), Expect = 1e-26
Identities = 82/263 (31%), Positives = 145/263 (54%), Gaps = 21/263 (7%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES- 64
E +RN +V++ GI V+ ++Y+ + A++G +GCGKS R++ +LIE
Sbjct: 2 EVAFDIRNFSVYYGNKVGI----RNVNLEIYRNKVTAIIGPSGCGKSTLLRSLNRLIELV 57
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
G +EG+V++ DG + + E+R+ I +FQ P+ ++ +A
Sbjct: 58 DGVRIEGEVIF---DGKNIYDDGVDAVELRR----RIGMVFQHPNPFPKSIFD---NVAY 107
Query: 125 AMEVHGKIKSIKEGIQKAVD--ILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
VHG IK KE +++ V+ + K+ L + R+++ LSGG +QR+ I I+ N
Sbjct: 108 GPRVHG-IKD-KERLKEIVEESLKKAALWDEVKDRLSDSALGLSGGQQQRLCIARAIATN 165
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P +++ DEPT+ALD A+I +L+ ++K+ Y TV+++THN+ A +D VA + G+
Sbjct: 166 PEVILFDEPTSALDPIAAAKIEELMVELKKNY--TVVVVTHNIQQAARISDYVAFFWMGE 223
Query: 243 IVEIGTVDQIFKNPLHPYTQGLL 265
+VE G ++F+ P T+ L
Sbjct: 224 LVEYGKTAKVFEKPEKELTEKYL 246
>pir||H72275 phosphate ABC transporter, ATP-binding protein - Thermotoga
maritima (strain MSB8)
>gi|4981816|gb|AAD36335.1|AE001781_6 (AE001781)
phosphate ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 251
Score = 119 bits (295), Expect = 5e-26
Identities = 80/262 (30%), Positives = 137/262 (51%), Gaps = 19/262 (7%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES- 64
EPI+++ N F Y G A++ V+ ++K + A++G +GCGK+ R+I ++ +
Sbjct: 2 EPIIEIEN----FSAYYGEKIAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHL 57
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
PG VEG++ + D + D +L E RK + +FQ P +Y +A
Sbjct: 58 PGFRVEGKIYFKGQD--IYDP-QLDVTEYRK----RVGMVFQKPTPFPMSIYD---NVAF 107
Query: 125 AMEVHG-KIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+HG K K I + I + + K+ L + +N LSGG +QR+ I ++ P
Sbjct: 108 GPRIHGVKSKHILDRIVEE-SLKKAALWDEVKSELNKSGTRLSGGQQQRLCIARALAVEP 166
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
+++ DEPT+ALD +I LL ++ E Y T++++THN+G AD +A MY G++
Sbjct: 167 EVILLDEPTSALDPIATQRIEKLLEELSENY--TIVIVTHNIGQAIRIADYIAFMYRGEL 224
Query: 244 VEIGTVDQIFKNPLHPYTQGLL 265
+E G +I + P + T+ L
Sbjct: 225 IEYGPTREIVERPKNRLTEEYL 246
>gb|AAG18995.1| (AE004999) phosphate transport ATP-binding; PstB2 [Halobacterium
sp. NRC-1]
Length = 281
Score = 117 bits (290), Expect = 2e-25
Identities = 78/257 (30%), Positives = 139/257 (53%), Gaps = 22/257 (8%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
PEP+++ R+L V + G +A+E V D+ + + A++G +GCGKS R I ++ +
Sbjct: 32 PEPVIRARDLDVFY----GSERALESVDIDIPEQQVTAIIGPSGCGKSTFLRCINRMNDR 87
Query: 65 -PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY-TVGYQI 122
++G + G+ V + +R+ + +FQ+P+ +Y V Y +
Sbjct: 88 IDAARIDGDLTLR---GTNVYDAAVDPVALRR----RVGMVFQEPNPFPKSIYDNVAYGL 140
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
E +V G I E + ++ L + + ++++ LSGG +QR+ I I+ +
Sbjct: 141 -EIQDVEGDHDEIVEQ-----SLRRAALWDEVSHQLDSSGVALSGGQQQRLCIARAIAPD 194
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV-MYAG 241
P +L+ DEP +ALD +Q+ DL+ ++ E+Y TV+++THN+ A +D+ AV + G
Sbjct: 195 PEVLLMDEPASALDPVATSQVEDLIEELAEEY--TVVIVTHNMQQAARISDKTAVFLTGG 252
Query: 242 KIVEIGTVDQIFKNPLH 258
K+VE G DQIF+NP H
Sbjct: 253 KLVEFGDTDQIFENPEH 269
>emb|CAA10913.1| (AJ222649) sapF [Erwinia chrysanthemi]
Length = 269
Score = 115 bits (286), Expect = 6e-25
Identities = 75/268 (27%), Positives = 142/268 (52%), Gaps = 27/268 (10%)
Query: 6 EPILQVRNLTVHFYTYAGI-----VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
E +L+ RNLT F G V+A++ VSF + + +T A++GE G GKS ++ ++
Sbjct: 3 ETLLEARNLTKTFRYRTGWFRRQHVQAVKSVSFTLRERQTLAIIGENGSGKSTLAKMLSG 62
Query: 61 LIE--SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
+I S +++ L Y D R I QD SL+P +
Sbjct: 63 VIPPTSGELVIDDHPLQYGD---------------YHYRSQRIRMSIQDSATSLNPRQRI 107
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDI-LKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
G + + ++ + + +KA+++ L+ V + A YPH L+ G KQR+ +
Sbjct: 108 GQLLELPLRLNTDLTPQER--EKAINLALRQVGLR--ADHATYYPHALAPGQKQRIGLAR 163
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
+ P++++ADE +LD+++++QI++L+ +++EK+ + I +T +LG++ +D++ V
Sbjct: 164 ALILQPKVIVADEVLASLDMSVRSQIINLMLELQEKHGISYIYVTQHLGMMKHISDQILV 223
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLL 265
M AG++VE G+ + PLH T+ L+
Sbjct: 224 MQAGEVVERGSTADVLAAPLHDLTKRLI 251
>emb|CAC00366.1| (AL160371) probable oligopeptide transport ATP-binding protein appf
[Leishmania major]
Length = 242
Score = 114 bits (282), Expect = 2e-24
Identities = 74/201 (36%), Positives = 111/201 (54%), Gaps = 21/201 (10%)
Query: 6 EPILQVRNLTVHFYTYAGI-------VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
+P++ R+L HF GI V+A++ VSFDV KGET +VGE+GCGKS T+R +
Sbjct: 13 QPLVIARDLVKHFPLKGGIPGRRAGAVRAVDGVSFDVLKGETLGVVGESGCGKSTTARLL 72
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
QL G++++ D V +L + R +++ +FQD ++SL+P T+
Sbjct: 73 MQLTAQD----SGELIF---DAEXVGSAQLPLKRYR----SQVQMVFQDSYSSLNPRLTI 121
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
IA VHG +E I +A +L V + +P R YPHELSGG +QRV I
Sbjct: 122 EESIAFTARVHG--IPAREAIDRARHLLGRVGL-EPLRFGGRYPHELSGGQRQRVNIARA 178
Query: 179 ISNNPRILIADEPTTALDVTI 199
+ PR++I DE +ALD ++
Sbjct: 179 LVLRPRLVILDEAVSALDKSV 199
>dbj|BAB07815.1| (AB036417) CysA protein [Acetabularia acetabulum]
Length = 357
Score = 110 bits (273), Expect = 2e-23
Identities = 72/254 (28%), Positives = 129/254 (50%), Gaps = 23/254 (9%)
Query: 3 KVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
K P ++++ + H+ T GI KA+ V ++ GE AL+G +G GK+ R + L
Sbjct: 2 KQPGFDVKLQGIVKHYKTRKGIFKAVNGVDLEINSGEIVALLGPSGSGKTTLLRVMAGLE 61
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
E I EG++ Y +D + L +I ++FQ +L TVG I
Sbjct: 62 E----ITEGKIFYDGEDATDWSL-----------EDRQIGFVFQG--YALFKHLTVGDNI 104
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
A + I++ +++ +D+++ +P R +P +LSGG +QR+ + ++
Sbjct: 105 AFGPRMKKMDIDIRKRVKELLDLVQ---LPGLESR---FPQQLSGGQRQRIALARALAYE 158
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
PR+L+ DEP ALD I+ + + L ++ T +++TH+ E ADRV V G
Sbjct: 159 PRLLLLDEPFGALDPEIREDLRNSLKRIISSLNLTSVMVTHDQEEAFEVADRVVVFNKGS 218
Query: 243 IVEIGTVDQIFKNP 256
I ++G+++ I++NP
Sbjct: 219 IEQVGSLEDIYRNP 232
>sp|P31134|POTG_ECOLI PUTRESCINE TRANSPORT ATP-BINDING PROTEIN POTG
>gi|321862|pir||B45313 putrescine transport protein potG
- Escherichia coli >gi|147335|gb|AAA24410.1| (M93239)
nucleotide binding protein [Escherichia coli]
>gi|1651388|dbj|BAA35566.1| (D90723) Putrescine
transport protein PotG. [Escherichia coli]
>gi|1787079|gb|AAC73942.1| (AE000187) ATP-binding
component of putrescine transport system [Escherichia
coli K12]
Length = 404
Score = 109 bits (269), Expect = 6e-23
Identities = 89/271 (32%), Positives = 144/271 (52%), Gaps = 34/271 (12%)
Query: 2 RKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
RK P+L++RNLT +Y G A++ VS +YKGE FAL+G +GCGKS R +
Sbjct: 40 RKALTPLLEIRNLTK---SYDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF 95
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
E P GQ++ DG VDL ++ +R I +FQ +L P TV
Sbjct: 96 -EQPSA---GQIML---DG--VDLSQVPPY-LRPIN-----MMFQS--YALFPHMTVEQN 138
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
IA ++ K+ E + ++L V + + A+R PH+LSGG +QRV + ++
Sbjct: 139 IAFGLKQDKLPKA--EIASRVNEMLGLVHMQEFAKRK---PHQLSGGQRQRVALARSLAK 193
Query: 182 NPRILIADEPTTALDVTI----QAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
P++L+ DEP ALD + Q +++D+L E+ T +++TH+ A R+A+
Sbjct: 194 RPKLLLLDEPMGALDKKLRDRMQLEVVDIL----ERVGVTCVMVTHDQEEAMTMAGRIAI 249
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGLLRAV 268
M GK V+IG ++I+++P Y+ + +V
Sbjct: 250 MNRGKFVQIGEPEEIYEHPTTRYSAEFIGSV 280
>pir||B70127 phosphate ABC transporter, ATP-binding protein (pstB) homolog -
Lyme disease spirochete >gi|2688112|gb|AAC66606.1|
(AE001132) phosphate ABC transporter, ATP-binding
protein (pstB) [Borrelia burgdorferi]
Length = 260
Score = 108 bits (268), Expect = 8e-23
Identities = 78/260 (30%), Positives = 136/260 (52%), Gaps = 21/260 (8%)
Query: 6 EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES- 64
E I++ NL + FYT KA+ K++ + K AL+G +GCGKS R + ++ +
Sbjct: 11 EVIIETENLNL-FYTD---FKALNKINMKILKNSITALIGPSGCGKSTFLRTLNRMNDLV 66
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
G +EG V+Y +G + E+R+ +I +FQ P+ L +Y I+
Sbjct: 67 EGIKIEGNVIY---EGKNIYSNNFDILELRR----KIGMVFQTPNPFLMSIYD---NISY 116
Query: 125 AMEVHGKI--KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
++HG K + E +++++ KS L + +++ LSGG +QR+ I ++
Sbjct: 117 GPKIHGTKDKKKLDEIVEQSLK--KSALWNEVKDKLHTNALSLSGGQQQRLCIARTLAIE 174
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P +++ DEPT+ALD +I +L+ +KE Y T+I++THN+ +DR A G
Sbjct: 175 PNVILMDEPTSALDPISTGKIEELIINLKESY--TIIIVTHNMQQAGRISDRTAFFLNGC 232
Query: 243 IVEIGTVDQIFKNPLHPYTQ 262
I E + D++F NP + T+
Sbjct: 233 IEEESSTDELFFNPKNTKTE 252
>pir||C75369 amino acid ABC transporter, ATP-binding protein - Deinococcus
radiodurans (strain R1)
>gi|6459415|gb|AAF11206.1|AE002008_1 (AE002008) amino
acid ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 265
Score = 108 bits (266), Expect = 1e-22
Identities = 83/269 (30%), Positives = 133/269 (48%), Gaps = 27/269 (10%)
Query: 2 RKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
R V EPI+ +N+ HF T+ A+ V+ V +GE ++G +G GKS R I L
Sbjct: 19 RTVGEPIIVAQNVQKHFGTF----HALRGVNLTVRQGEVVVIIGPSGSGKSTFIRTINAL 74
Query: 62 IESPGRIVEGQVLYYRDDGSV-VDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
D GS+ VD L L E+ +FQ +L P TV
Sbjct: 75 DP-------------HDGGSITVDGLPLQGARNLDAIRREVGMVFQS--FNLFPHLTVLD 119
Query: 121 QIAEA-MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
I A V G K+ + + +D+L+ V I + A + +P +LSGG +QRV I +
Sbjct: 120 NITLAPTRVRGVDKAQAQA--RGLDLLRRVGIEEQAYK---FPAQLSGGQQQRVAIARAL 174
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+ P+I++ DEPT+ALD + ++LD++ ++ + T++++TH +G E ADR+
Sbjct: 175 AMEPKIMLFDEPTSALDPEMIKEVLDVMKEL-ARTGMTMLVVTHEMGFAREVADRILFFD 233
Query: 240 AGKIVEIGTVDQIFKNPLHPYTQGLLRAV 268
G IVE T + ++NP H + L +
Sbjct: 234 QGNIVEDTTPEAFYQNPQHERARQFLSKI 262
>gb|AAK41516.1| Oligo/dipeptide transport, ATP binding protein . carboxy-end
fragment. (dppF-2) [Sulfolobus solfataricus]
Length = 103
Score = 106 bits (261), Expect = 5e-22
Identities = 51/97 (52%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 234 RVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAVPNPLTKIEKLEA-IPGTVPNLITPP 292
R+ VMY GK+VEIGT +++ PLHPYTQ LL+AVP P I E I G + + + P
Sbjct: 7 RIGVMYLGKVVEIGTPEEVISEPLHPYTQALLQAVPVPDPDIGIKEPNIKGEIQSPLELP 66
Query: 293 GGCRFHPRCPKVMSICKEKVPELKEIEPGHFVACHLY 329
GC F+ RCP ICKEK PE+K I+ H+VACHLY
Sbjct: 67 KGCVFYSRCPFAKDICKEKPPEIKRIKGDHYVACHLY 103
>pir||A82184 ABC transporter, ATP-binding protein VC1568 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656076|gb|AAF94722.1| (AE004234) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 233
Score = 103 bits (255), Expect = 3e-21
Identities = 75/242 (30%), Positives = 133/242 (53%), Gaps = 22/242 (9%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE- 63
P P+++++ + H+ + +VKA++ V + GE A++G +G GKS + L +
Sbjct: 6 PAPLVELQQICKHYTSGQNVVKALDGVDLTIRHGEFLAILGPSGSGKSTLMNVLGCLDKP 65
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPL-YTVGYQI 122
+ GR Y+ DG VD LS +++ IR +I ++FQ S + L Y
Sbjct: 66 TAGR--------YQLDGHPVD--SLSTQQLAAIRNQKIGFVFQ----SFNLLEYASALDN 111
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
V+ +K+ K+ ++A ++L V + D R+++ P++LSGG KQRV I + N
Sbjct: 112 VALPLVYAGVKA-KDRRRRATELLTRVGLAD---RLDHKPNQLSGGQKQRVAIARALINQ 167
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P+IL+ADEPT ALD A+I L N++ + + T+I++TH+ +A+ R+ + G+
Sbjct: 168 PQILLADEPTGALDSKSGAEIEALFNELHREGR-TIIVVTHD-NELAKRTKRIVTIRDGQ 225
Query: 243 IV 244
+V
Sbjct: 226 VV 227
>pir||H82377 ABC transporter, ATP-binding protein VCA1101 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658548|gb|AAF96993.1| (AE004435) ABC transporter,
ATP-binding protein [Vibrio cholerae]
Length = 486
Score = 103 bits (255), Expect = 3e-21
Identities = 79/272 (29%), Positives = 130/272 (47%), Gaps = 33/272 (12%)
Query: 28 IEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI----ESPGRI-VEGQVLYYRDDGSV 82
+E +SF+++ + ++GETG GKS+ + AI + S G+I + GQ + R
Sbjct: 46 VESLSFELHAHQALTILGETGSGKSLLANAIIGNLPAGLRSQGKIALFGQYQHQR----- 100
Query: 83 VDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEA----MEVHGKIKSIKEG 138
++ E + G ++A + Q+P +L+P+ G Q+AE M H ++ +
Sbjct: 101 ------TQAEREALWGKQLAVLPQEPWHALNPIMRAGEQVAEVHRLVMGNHAASAALTDS 154
Query: 139 IQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVT 198
+ V + + + + YPH+LSGGM QRV +LIADEPT LD +
Sbjct: 155 AFQQVALHQDL---------SKYPHQLSGGMAQRVAYLCATQTQAPLLIADEPTKGLDAS 205
Query: 199 IQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLH 258
+ QI+ LL + + ++ ITH++ V + + VM G I E G Q+ +P
Sbjct: 206 RRDQIIALL--QAQLTRGALLTITHDIEVAEKLGGTIIVMRKGVIQEQGPAQQVLSHPQS 263
Query: 259 PYTQGLLRAVPN--PLTKIEKLEAIPGTVPNL 288
YT+ L+ A P P T K TV N+
Sbjct: 264 DYTKALINADPRYWPTTPQSKTGEPLLTVDNI 295
Score = 71.0 bits (171), Expect = 2e-11
Identities = 58/234 (24%), Positives = 107/234 (44%), Gaps = 35/234 (14%)
Query: 3 KVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
K EP+L V N+ +H G + +SF + GE + G++GCGKS + + L+
Sbjct: 284 KTGEPLLTVDNIAMH----RGEKCLFDSLSFTLSAGEILGISGDSGCGKSTLADLLLGLL 339
Query: 63 E-SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
+ S GRI ++ I + ++QDP ++L T+
Sbjct: 340 KPSQGRI----------------------HRLQAIPLGKALKLYQDPPSALAKSVTLQTL 377
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
+ + H +S + + + + ++L +R+ N ++SGG QR I +
Sbjct: 378 LEDVCRQHSVERSQIPRLLERLALSPNLL----SRKAN----QVSGGELQRFAILRALLT 429
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRV 235
P +L+ADEPT+ LD A L L+ ++ ++ ++LI+H+ + +T RV
Sbjct: 430 RPTLLVADEPTSRLDPITAASTLQLIIELTQEIGCALVLISHDKLALEKTCHRV 483
>gb|AAC05643.1| (AF033673) unknown [Pseudomonas marginalis pv. alfalfae]
Length = 254
Score = 101 bits (250), Expect = 1e-20
Identities = 85/268 (31%), Positives = 135/268 (49%), Gaps = 30/268 (11%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE- 63
PE I+Q++ + + G ++ ++ +V +GE L G +G GKS T R + +L E
Sbjct: 11 PEGIIQMQGVNKWY----GQFHVLKDINLNVKQGERIVLCGPSGSGKSTTIRCLNRLEEH 66
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEE--EIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
GRIV VD ++L+ + +I IR E+ +FQ H +L P T+
Sbjct: 67 QQGRIV-------------VDGVELTNDLKQIEAIR-REVGMVFQ--HFNLFPHLTILQN 110
Query: 122 IAEA-MEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
A M V K E I A+ L+ V IP+ A + +P +LSGG +QRV I +
Sbjct: 111 CTLAPMWVRKMPKRKAEEI--AMHYLERVRIPEQAHK---FPGQLSGGQQQRVAIARALC 165
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
P+I++ DEPT+ALD + ++LD + + E T++ +TH +G A+RV M
Sbjct: 166 MKPKIMLFDEPTSALDPEMVKEVLDTMIGLAED-GMTMLCVTHEMGFARTVANRVIFMDK 224
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLLRAV 268
G+IVE + F NP + T+ L +
Sbjct: 225 GEIVEQAAPNDFFDNPQNDRTKLFLSQI 252
>pir||T47012 hypothetical protein [imported] - Yersinia pestis
>gi|4106600|emb|CAA21355.1| (AL031866) ORF32, len:, 236
aa, hypothetical ABC transporter, similar to many, eg:
E. coli YBBA_ECOLI (228 aa), 44.0% identity in 225 aa
overlap, Fasta scores: opt: 611, E(): 0 [Yersinia
pestis]
Length = 237
Score = 101 bits (248), Expect = 2e-20
Identities = 78/241 (32%), Positives = 121/241 (49%), Gaps = 21/241 (8%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
PE + T H Y G V A+E ++ + +GE A++G +G GK+ +T L
Sbjct: 10 PEHLADAVIETRHLYKRFGQVTALEDINIRINRGEFVAIMGASGSGKTTLMNILTCL--- 66
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
+ EGQVL DG +D L EE R+ R ++I +FQ H L P T I
Sbjct: 67 -DTVSEGQVLL---DG--IDAAGLDEEGRRQFRADKIGLVFQQFH--LIPYLTALENIML 118
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
A H + + A +L+ V + R+ + P +LSGG +QRV I + N P
Sbjct: 119 AQHYHSVVDE-----EAARQVLEQVGMTP---RMGHLPSQLSGGEQQRVCIARALVNQPP 170
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
I+ ADEPT LD + ++L+LLN + + + T++++THN + ADRV + GK +
Sbjct: 171 IIFADEPTGNLDEENEQRVLELLNHIHRQGR-TIVMVTHNPDLSC-VADRVIRLQHGKYL 228
Query: 245 E 245
+
Sbjct: 229 D 229
>gb|AAF64239.1|AF249736_3 (AF249736) ABC transporter [Pseudomonas putida]
Length = 282
Score = 100 bits (246), Expect = 3e-20
Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 32/258 (12%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P ++VRN+ F G A+ VS D+ GE L+G +GCGK+ R I L
Sbjct: 6 PGAQMKVRNIHKRF----GAFTALNDVSLDIAAGELVCLLGPSGCGKTTLLRCIAGLER- 60
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKI--RGNEIAYIFQDPHASLDPLYTVGYQI 122
+D G+ L + E +I ++ + + +FQ +L P TV I
Sbjct: 61 ------------QDRGT----LYIGERDISELPPQARDYGILFQS--YALFPNLTVEANI 102
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
A + G+ ++ Q+ ++L+ V + ++ YP +LSGG +QRV + ++ +
Sbjct: 103 AYGLTGSGR----EQARQRVTEMLELVGLAGSEKK---YPGQLSGGQQQRVALARALAPS 155
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P +L+ DEP +ALD ++ + L +++ + T +++THN ADR+AVM G+
Sbjct: 156 PSLLLLDEPMSALDARVREHLCTELRQLQRQLGITTLMVTHNQDEAMLMADRIAVMNNGQ 215
Query: 243 IVEIGTVDQIFKNPLHPY 260
+ + T +I+ P P+
Sbjct: 216 VEQYATPQEIYDQPATPF 233
>emb|CAC11998.1| (AL445065) ABC transporter related protein [Thermoplasma
acidophilum]
Length = 334
Score = 99.8 bits (245), Expect = 4e-20
Identities = 75/256 (29%), Positives = 133/256 (51%), Gaps = 32/256 (12%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
M + PI++ NLT Y G +KA++ ++ ++ + E + L+G+ G GK+ T + +T
Sbjct: 1 MEAIRLPIIKTENLTK---IYPGGIKAVDGLNIEIEEAEIYGLLGKNGAGKTTTIKMLTT 57
Query: 61 LIE--SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
I+ S I+ G DL K +E+IR+I I + QD D
Sbjct: 58 AIDPTSGNAIIGGY-----------DLRK-DKEKIRRI----IGVVPQDLTTDAD----- 96
Query: 119 GYQIAEAMEVHGKIKSI--KEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIG 176
+ E + + +I +E Q+ D+L+ V + D N Y + SGGM++R+ +
Sbjct: 97 -LKGVENLRMIASFYNIPKQEAEQRIKDLLEIVDLSDWG---NKYVSQYSGGMRKRLELI 152
Query: 177 IGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVA 236
G+ N+P+IL DEPT LDV ++++ + ++++ T+IL +H L V + ADR++
Sbjct: 153 CGLVNSPKILFLDEPTLGLDVNTRSKMWKYIRDIQKELGVTIILTSHYLEEVDQLADRIS 212
Query: 237 VMYAGKIVEIGTVDQI 252
++ GKI+ GT D +
Sbjct: 213 IIDHGKILITGTPDSL 228
>pir||T34822 ABC-transporter ATP binding protein - Streptomyces coelicolor
>gi|2815356|emb|CAA16479.1| (AL021530) ABC-transporter
ATP binding protein [Streptomyces coelicolor A3(2)]
Length = 230
Score = 99.1 bits (243), Expect = 6e-20
Identities = 74/245 (30%), Positives = 127/245 (51%), Gaps = 23/245 (9%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
V E +++V ++ + + V A+ VSFDV +GE AL G +G GK+ + L +
Sbjct: 5 VTETMVRVEDVRKSYGRDSAAVHALRGVSFDVPRGELIALKGRSGSGKTTLLNIVGGL-D 63
Query: 64 SP--GRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
+P GR+ V+G+ DL +L E+ + +R + + ++FQ L P+ T
Sbjct: 64 TPDAGRVEVDGR-----------DLAELDEDGLLALRRDRVGFVFQS--FGLIPILTAAE 110
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
+ M + + + +E ++ +L V + D A + P E+SGG +QRV I ++
Sbjct: 111 NVGVPMRL--RRAAAREREERVELLLSLVGLADHAAQ---RPGEMSGGQQQRVAIARALA 165
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
NNP +LIADEPT LD +++LL + + T ++ TH+ + + ADRV +
Sbjct: 166 NNPALLIADEPTGQLDAETGHSVMELLRAVVRSEQVTALVATHD-ATLLDLADRVLELRD 224
Query: 241 GKIVE 245
G+IVE
Sbjct: 225 GEIVE 229
>gi|10955070 agtA [Agrobacterium tumefaciens]
>gi|6689864|gb|AAF23877.1|AF117204_2 (AF242881) agtA
[Agrobacterium tumefaciens]
Length = 359
Score = 99.1 bits (243), Expect = 6e-20
Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 26/252 (10%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P P + + +T F G V A++ VS D+ +GE FAL+G +G GK+ T + ++
Sbjct: 5 PLPAVSFQGVTRRF----GPVTAVDNVSLDISQGEFFALLGSSGSGKT-TLLTLLAGFDN 59
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
P EGQVL + + +S+ K +I +FQ+ +L P T +A
Sbjct: 60 PN---EGQVL--------MSGVSVSDVPPHK---RQIGVVFQN--YALFPHLTAAENVAY 103
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
+ + G + +E KA L ++ + R+ YP +LSGG +QRV + + +P
Sbjct: 104 PLRMRGVARHEREERVKAALALVNL-----SDRLGAYPIQLSGGQQQRVALARALVFSPA 158
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
IL+ DEP ALD ++ Q+ L +++ + TVI +TH+ ADR+ +M AG+++
Sbjct: 159 ILLMDEPLGALDRRLRDQMQQELKRIQHELGITVIYVTHDQSEAMAMADRIGIMSAGRLL 218
Query: 245 EIGTVDQIFKNP 256
++ + I+ P
Sbjct: 219 QVADPEAIYAAP 230
>gb|AAF43494.1|AF130119_1 (AF130119) oligopeptide permease D [Mycoplasma bovis]
Length = 156
Score = 97.5 bits (239), Expect = 2e-19
Identities = 55/128 (42%), Positives = 75/128 (57%), Gaps = 2/128 (1%)
Query: 201 AQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFKNPLHPY 260
A +L L +++++Y ++ILI+HN+ VVA+ + + VMYAGKIVE GT IF NP HPY
Sbjct: 1 ASVLALFEQIRQEYNISIILISHNISVVAKFCEYIYVMYAGKIVERGTRKDIFTNPAHPY 60
Query: 261 TQGLLRAVPNPLTKIEKLEAIPGTVPNLITPPGGCRFHPRCPKVMSICKEKVPELKEIEP 320
T L+ A+P E+L +I GT P++ P G F PR + I EK P L EI
Sbjct: 61 TWALISAIPE--NDDERLFSIQGTPPDMANLPIGDPFAPRNDFALEIDYEKEPPLIEINS 118
Query: 321 GHFVACHL 328
H A L
Sbjct: 119 HHKAATWL 126
>pir||A82932 ABC Transporter UU118 [imported] - Ureaplasma urealyticum
>gi|6899075|gb|AAF30524.1|AE002112_5 (AE002112) ABC
Transporter [Ureaplasma urealyticum]
Length = 300
Score = 97.1 bits (238), Expect = 2e-19
Identities = 75/244 (30%), Positives = 125/244 (50%), Gaps = 23/244 (9%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P I+++R++ F I + ++ V+ D+ KGE ++G +G GK+ ++ L
Sbjct: 61 PNNIIELRDVKKIFTNGYLINETLKGVNLDIRKGEFVIILGPSGSGKTTLMNIMSGL--- 117
Query: 65 PGRIVEGQVLYYRDDGSVVD--LLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
R +G V V D L+ +++ ++ R I ++FQ + L L +
Sbjct: 118 -DRATDGDV-------RVCDKQLINMNQNKLTDFRKEYIGFVFQQ-YGLLPTL-----SV 163
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
E +E+ ++ K+ K D LK+V + D A++ +PHELSGG +QRV I ++ N
Sbjct: 164 EENVEIGADLQVDKKRRIKPQDALKAVGMLDYAKK---FPHELSGGQQQRVSIARALAKN 220
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P IL DEPT A+D T+ IL K+ ++ K TVI++THN + AE V + G
Sbjct: 221 PIILFGDEPTGAVDETMSKIILKEFVKVNQELKTTVIIVTHN-PIFAELGTLVIKVKDGN 279
Query: 243 IVEI 246
I E+
Sbjct: 280 INEL 283
>pir||G83245 probable ATP-binding component of ABC transporter PA3212 [imported]
- Pseudomonas aeruginosa (strain PAO1)
>gi|9949332|gb|AAG06600.1|AE004744_15 (AE004744)
probable ATP-binding component of ABC transporter
[Pseudomonas aeruginosa]
Length = 264
Score = 95.2 bits (233), Expect = 1e-18
Identities = 77/248 (31%), Positives = 118/248 (47%), Gaps = 19/248 (7%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P+ I+QVR+L F G E + DV +GE +VG +G GKSV R+I L
Sbjct: 6 PQAIIQVRDLCNRF----GAQAVHEHLDLDVRRGEILGVVGGSGTGKSVLLRSIVGL--- 58
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
R G V + +D LL+L EE R + +FQ A L V
Sbjct: 59 -RRPTSGSVRVFGED-----LLQLPEER-RSLVERRFGVLFQQG-ALFSSLTVVENVALP 110
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
+E G ++ E + + +K L PA + YP LSGGM +R + ++ +P
Sbjct: 111 LIENAGLPRADAEHLAQ----VKLALAGLPANAGDKYPASLSGGMIKRAALARALALDPD 166
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
IL DEPT LD A +L+ +++ TV L+TH+L + DRVAV+ K++
Sbjct: 167 ILFLDEPTAGLDPIGAAAFDNLIRTLRDALGLTVFLVTHDLDTLYTICDRVAVLSQKKVL 226
Query: 245 EIGTVDQI 252
+ T++++
Sbjct: 227 VVDTLERV 234
>pir||S75652 ABC-type transport protein sll1878 - Synechocystis sp. (strain PCC
6803) >gi|1653298|dbj|BAA18213.1| (D90912) ABC
transporter [Synechocystis sp.]
Length = 368
Score = 94.8 bits (232), Expect = 1e-18
Identities = 71/254 (27%), Positives = 128/254 (49%), Gaps = 20/254 (7%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+ + +L V++L F + V ++K++F++ GE L+G +GCGK+ R I E
Sbjct: 14 IEDSVLTVQDLGKSFRGQSTPV--LQKINFNLAPGEILGLLGPSGCGKTTLLRIIAGF-E 70
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
+P G V D S + L E+ + +FQD +L P T+ IA
Sbjct: 71 TP---TSGTVHLEGDCVSGENGLTPPEQR-------QTGMVFQD--YALFPHLTITDNIA 118
Query: 124 EAMEVHGKIKSIKEGIQ-KAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
+ H K ++ IQ + ++L V + +R YPHELSGG +QR+ + ++
Sbjct: 119 FGLR-HKSQKLNRQQIQGRVAEVLHLVGLTGLEKR---YPHELSGGQQQRIALARALAPK 174
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P +++ DEP + LDV ++ ++ + + + I +TH+ +DR+ VMY G
Sbjct: 175 PNLILLDEPLSNLDVQVRQRLRHEIRHILKATGTAAIFVTHDQEEAMAISDRIGVMYRGN 234
Query: 243 IVEIGTVDQIFKNP 256
+ +IGT ++I+++P
Sbjct: 235 LEQIGTPEEIYRSP 248
>pir||T10888 iron utilization protein C - Haemophilus influenzae
>gi|619400|gb|AAB32112.1| (S72674) HitC=iron utilization
protein [Haemophilus influenzae, type b, DL42, NTHI
TN106, Peptide, 356 aa]
Length = 356
Score = 94.0 bits (230), Expect = 2e-18
Identities = 67/261 (25%), Positives = 123/261 (46%), Gaps = 30/261 (11%)
Query: 2 RKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
+ + P+L V+NL F + + +SF + +GE L+G +GCGK+ RAI
Sbjct: 5 KMINNPLLTVKNLNKFFNEQ----QVLHDISFSLQRGEILFLLGASGCGKTTLLRAIAGF 60
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQD----PHASLDPLYT 117
E P G++ + + L E + + Y+ Q+ PH L+
Sbjct: 61 -EQPSN---GEIW-------LKERLIFGENFNLPTQQRHLGYVVQEGILFPH--LNVYRN 107
Query: 118 VGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
+ Y + + + K+ E I + I + + +PH+LSGG +QRV +
Sbjct: 108 IAYGLGNGKGKNSEEKTRIEQIMQLTGIFELA---------DRFPHQLSGGQQQRVALAR 158
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ NP +++ DEP +ALD ++ QI + + + A+ I +TH+ AD++A+
Sbjct: 159 ALAPNPELILLDEPFSALDEHLRQQIRQEMLQALRQSGASAIFVTHDRDEALRYADKIAI 218
Query: 238 MYAGKIVEIGTVDQIFKNPLH 258
+ GKI++I T ++ +P H
Sbjct: 219 IQQGKILQIDTPRTLYWSPNH 239
>sp|P44513|HITC_HAEIN IRON(III)-TRANSPORT ATP-BINDING PROTEIN HITC
>gi|1075080|pir||E64048 nucleotide-binding protein sfuC
homolog - Haemophilus influenzae (strain Rd KW20)
Length = 356
Score = 93.6 bits (229), Expect = 3e-18
Identities = 67/261 (25%), Positives = 123/261 (46%), Gaps = 30/261 (11%)
Query: 2 RKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
+ + P+L V+NL F + + +SF + +GE L+G +GCGK+ RAI
Sbjct: 5 KMINNPLLTVKNLNKFFNEQ----QVLHDISFSLQRGEILFLLGSSGCGKTTLLRAIAGF 60
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQD----PHASLDPLYT 117
E P G++ + + L E + + Y+ Q+ PH L+
Sbjct: 61 -EQPSN---GEIW-------LKERLIFGENFNLPTQQRHLGYVVQEGVLFPH--LNVYRN 107
Query: 118 VGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
+ Y + + + K+ E I + I + + +PH+LSGG +QRV +
Sbjct: 108 IAYGLGNGKGKNSEEKTRIEQIMQLTGIFELA---------DRFPHQLSGGQQQRVALAR 158
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ NP +++ DEP +ALD ++ QI + + + A+ I +TH+ AD++A+
Sbjct: 159 ALAPNPELILLDEPFSALDEHLRQQIRQEMLQALRQSGASAIFVTHDRDESLRYADKIAI 218
Query: 238 MYAGKIVEIGTVDQIFKNPLH 258
+ GKI++I T ++ +P H
Sbjct: 219 IQQGKILQIDTPRTLYWSPNH 239
>pir||A64455 methyl coenzyme M reductase (EC 1.8.-.-) component A2 -
Methanococcus jannaschii >gi|1592327|gb|AAB99247.1|
(U67565) methyl coenzyme M reductase system, component
A2 (atwA) [Methanococcus jannaschii]
Length = 539
Score = 93.6 bits (229), Expect = 3e-18
Identities = 65/254 (25%), Positives = 132/254 (51%), Gaps = 16/254 (6%)
Query: 3 KVPEPILQVRNLTVHFYTYA-GIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
++ E I+++ N++ H+ + G++KA++ V+ ++ + E F LVG +G GK+ ++ I +
Sbjct: 282 EIKEDIIKLENVSKHYCSVERGVIKAVDNVTLNIREREIFGLVGTSGAGKTTLAKIIAGV 341
Query: 62 IE-SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
+ S G+ ++R VD+ K + + I +FQ+ +L P T+
Sbjct: 342 LPPSKGKY------WFRVGDEWVDMTKPGPMGRGRAK-RYIGILFQE--YALYPHRTILE 392
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARR--VNNYPHELSGGMKQRVVIGIG 178
+ EA+ + + + KAV L SV + ++ YPHELS G + R +
Sbjct: 393 NLTEAIGLELPDEFAR---MKAVYTLVSVGFSEEEAEEILDKYPHELSVGERHRCALAQV 449
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ PR++I DEPT +D + + + ++K + + + T I+++H++ V DR +M
Sbjct: 450 LIKEPRVVILDEPTGTMDPITRNTVAESIHKSRIELEQTYIIVSHDMDFVLNVCDRAGLM 509
Query: 239 YAGKIVEIGTVDQI 252
GK++++G ++I
Sbjct: 510 RNGKLIKVGKPEEI 523
Score = 85.8 bits (209), Expect = 6e-16
Identities = 73/264 (27%), Positives = 132/264 (49%), Gaps = 27/264 (10%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
+L+V+N+T F G ++ +SF + +GE+ ++G++G GKSV + +
Sbjct: 8 LLEVKNVTKKF----GDKVVLKNISFTLEEGESLGILGKSGAGKSVLLHMLRGM--DGYE 61
Query: 68 IVEGQVLY---YRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
EGQ++Y Y + VD+ + +K GNE+ I D Y + +IA
Sbjct: 62 PTEGQIIYHVSYCEKCGYVDVPSKAGTPCKKC-GNELKKIEVDFWNDKKYTYNLKRKIAI 120
Query: 125 AME----VHGKIKSIKEGI-----------QKAVDI-LKSVLIPDPARRVNNYPHELSGG 168
++ ++G+ K++ E I ++A+D+ LK + + R+ + +LSGG
Sbjct: 121 MLQRTFALYGE-KTVLENILEALHQAGYEGKEAIDMALKLIKMVKLEHRITHIARDLSGG 179
Query: 169 MKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVV 228
KQRVV+ I+ P I +ADEPT LD + L ++ K K ++IL +H V+
Sbjct: 180 EKQRVVLARQIAKEPFIFLADEPTGTLDPQTAKLVHSALKELVIKNKISLILTSHWPEVI 239
Query: 229 AETADRVAVMYAGKIVEIGTVDQI 252
AE ++ + G+I+ GT +++
Sbjct: 240 AELTEKAIWLDKGEIIMEGTSEEV 263
>gb|AAC21775.1| (U32695) iron(III) ABC transporter, ATP-binding protein (hitC)
[Haemophilus influenzae Rd]
Length = 351
Score = 93.2 bits (228), Expect = 4e-18
Identities = 67/259 (25%), Positives = 122/259 (46%), Gaps = 30/259 (11%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+ P+L V+NL F + + +SF + +GE L+G +GCGK+ RAI E
Sbjct: 2 INNPLLTVKNLNKFFNEQ----QVLHDISFSLQRGEILFLLGSSGCGKTTLLRAIAGF-E 56
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQD----PHASLDPLYTVG 119
P G++ + + L E + + Y+ Q+ PH L+ +
Sbjct: 57 QPSN---GEIW-------LKERLIFGENFNLPTQQRHLGYVVQEGVLFPH--LNVYRNIA 104
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
Y + + + K+ E I + I + + +PH+LSGG +QRV + +
Sbjct: 105 YGLGNGKGKNSEEKTRIEQIMQLTGIFELA---------DRFPHQLSGGQQQRVALARAL 155
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+ NP +++ DEP +ALD ++ QI + + + A+ I +TH+ AD++A++
Sbjct: 156 APNPELILLDEPFSALDEHLRQQIRQEMLQALRQSGASAIFVTHDRDESLRYADKIAIIQ 215
Query: 240 AGKIVEIGTVDQIFKNPLH 258
GKI++I T ++ +P H
Sbjct: 216 QGKILQIDTPRTLYWSPNH 234
>emb|CAC10293.1| (AL442629) putative ABC transport system ATP binding protein
[Streptomyces coelicolor]
Length = 264
Score = 92.8 bits (227), Expect = 5e-18
Identities = 73/252 (28%), Positives = 125/252 (48%), Gaps = 24/252 (9%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE- 63
P +++R + + AG V A+ + + +G A++G +G GKS + L
Sbjct: 12 PGLAVELRGVQRRYGRGAGTVHALAGIDLALPRGTFTAVMGPSGSGKSTFLQCAAGLDRP 71
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
S G + G ++ ++E E+ ++R + + ++FQ +L P TV +
Sbjct: 72 SAGSVRLGGT----------EITGMNENELTELRRSRLGFVFQA--FNLLPSLTVEQNVL 119
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
M + G+ ++ ++A D+L V + D ARR P ELSGG +QRV + + P
Sbjct: 120 LPMRLAGQ----RQDHRRAADVLAQVGLADKARR---RPGELSGGQQQRVAVARALVTAP 172
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
++ ADEPT ALD A++L LL + + ATV+++TH+ A ADRV + G
Sbjct: 173 DVIFADEPTGALDTGTAAEVLGLLRQAVDGLGATVVMVTHD-PAAAAWADRVLFLADGAF 231
Query: 244 ---VEIGTVDQI 252
+E G+ +QI
Sbjct: 232 ADHLERGSAEQI 243
>gb|AAC24216.1| (AF055482) ABC transporter [Thermotoga neapolitana]
Length = 138
Score = 92.4 bits (226), Expect = 6e-18
Identities = 51/139 (36%), Positives = 85/139 (60%), Gaps = 8/139 (5%)
Query: 195 LDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQIFK 254
+D +++ I++L +++++ +VI ITH+L +DR+A+M+ G IVE+G+V+++
Sbjct: 2 VDASLRMSIVNLFAQLRDQLGVSVIYITHDLATAYYVSDRIAIMFRGDIVEMGSVERVLT 61
Query: 255 NPLHPYTQGLLRAVPNPLTKIEKLEAIPGTVPNLITPP---GGCRFHPRCPKVMSICKEK 311
+P HPYT+ L ++P P + + E I T+ + GC+F RCP+VMSIC+E+
Sbjct: 62 DPKHPYTRLLRESIPEPDPEKKWKEEI--TIADTEYEEYLRKGCKFAGRCPEVMSICREE 119
Query: 312 VPELKEIEPG-HFVACHLY 329
P EI G V CHLY
Sbjct: 120 KP--PEIMVGDSMVRCHLY 136
>pir||B82185 glycerol-3-phosphate ABC transporter, ATP-binding protein VC1552
[imported] - Vibrio cholerae (group O1 strain N16961)
>gi|9656059|gb|AAF94706.1| (AE004233)
glycerol-3-phosphate ABC transporter, ATP-binding
protein [Vibrio cholerae]
Length = 393
Score = 88.2 bits (215), Expect = 1e-16
Identities = 75/265 (28%), Positives = 125/265 (46%), Gaps = 28/265 (10%)
Query: 3 KVPEPI-LQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
K EP+ L ++ L TY +A++ V +++GE LVG +GCGKS R+I L
Sbjct: 16 KHAEPVMLDIKQLVK---TYDNGHQAVKGVDLSIHQGEFIVLVGPSGCGKSSILRSIAGL 72
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
ES I G++ G VD K + +I + N Y PH S V
Sbjct: 73 -ES---ITSGEIHLA---GRRVDNEKPANRDIAMVFQNYALY----PHMS------VYDN 115
Query: 122 IAEAMEVHGKIK-SIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
+A ++ G K +I I K LK ++ P +LSGG +QRV +G I
Sbjct: 116 LAYGLKNRGVDKQTIAAKIAKVAKTLKI------EEYLDRKPAKLSGGQRQRVAMGRAIV 169
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
+P++ + DEP + LD ++A + + K++ + T + +TH+ ADR+ V+
Sbjct: 170 RDPQLFLFDEPLSNLDAALRAHMRLEIKKLQRELGVTSVYVTHDQVEAMTLADRIVVVKQ 229
Query: 241 GKIVEIGTVDQIFKNPLHPYTQGLL 265
G+I ++GT +++ P + +
Sbjct: 230 GEIEQVGTPAEVYHQPASTFVASFI 254
>sp|P15361|P29_MYCHR PROBABLE ABC TRANSPORTER ATP-BINDING PROTEIN P29
>gi|80893|pir||S01829 hypothetical protein p29 -
Mycoplasma hyorhinis >gi|150175|gb|AAA25428.1| (M37339)
protein 29 [Mycoplasma hyorhinis]
Length = 252
Score = 87.4 bits (213), Expect = 2e-16
Identities = 71/270 (26%), Positives = 135/270 (49%), Gaps = 37/270 (13%)
Query: 3 KVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
K P L+++NLT I+ ++ ++ D+ + L+G +G GKS + I +
Sbjct: 2 KKPLNKLEIKNLTFKNKNDDYII--LKNLNLDINSDKVLFLLGSSGQGKSSLLKTILKQT 59
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
+ ++EG +L+ + D + +L+++E + E++++ Q + P TV I
Sbjct: 60 D----VIEGTILFNKQD-----IFQLNKKEWKSFL-KEVSFLNQTTTSI--PFETVFTNI 107
Query: 123 AEAMEVHGKI---------KSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRV 173
+++ + + KS KE I +LK + I D ++ + LSGG +QRV
Sbjct: 108 VRSLQDYKNLFYNIFNLVSKSQKEEI---TSVLKELNILD---KIYHRVDSLSGGQQQRV 161
Query: 174 VIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETAD 233
I + P+I+IADEPT LD I I++L+ KM +K+ + +I++THN+ ++ E
Sbjct: 162 EIAKLMMQKPKIIIADEPTNFLDPNISKNIIELIIKMAKKFNSILIIVTHNVNLIHEFDS 221
Query: 234 RVAVM--------YAGKIVEIGTVDQIFKN 255
+ ++ + K + +DQ+FKN
Sbjct: 222 SILLIKNQEYHFYKSNKEINSNILDQVFKN 251
>pir||T35450 ABC transporter ATP binding protein - Streptomyces coelicolor
>gi|3319738|emb|CAA19904.1| (AL031035) ABC transporter
ATP binding protein [Streptomyces coelicolor A3(2)]
Length = 348
Score = 87.4 bits (213), Expect = 2e-16
Identities = 81/308 (26%), Positives = 134/308 (43%), Gaps = 38/308 (12%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+P +L + TV F G ++ V V + E ++G +G GKS RA+ L
Sbjct: 1 MPPSLLSLEGATVRF----GGRAVLDDVGLGVAEHEVVCVLGPSGSGKSTLLRAVAGLQP 56
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
+ G+V D S V K E+ +FQD L P V IA
Sbjct: 57 ----LDAGRVTLDGRDQSGVPAHK-----------REVGLMFQDHQ--LFPQRDVAGNIA 99
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNP 183
+ G ++ ++ + ++L+ V +P ARR LSGG +QRV + ++ P
Sbjct: 100 FGPRMRGASRAEQQA--RVAELLQLVGLPGAARRS---VAALSGGEQQRVALARALAPRP 154
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
R+L+ DEP LD +++ +++ L ++ + TV+ +TH+ G ADRV VM G+I
Sbjct: 155 RLLMLDEPLGQLDRSLRERLVVELRELFGRLGTTVLAVTHDQGEAFALADRVVVMRDGRI 214
Query: 244 VEIGTVDQIFKNPLHPYTQGLL------------RAVPNPLTKIEKLEAIPGTVPNLITP 291
+ GT ++++ P + L +A P K+ E P ++
Sbjct: 215 AQSGTPLEVWQRPADAFVARFLGFENVAEASVAGQAADTPWGKVPVPEDAPQGTRTVLVR 274
Query: 292 PGGCRFHP 299
P G R P
Sbjct: 275 PAGVRVVP 282
>emb|CAB61861.1| (AL133252) putative ABC-transporter ATP binding protein
[Streptomyces coelicolor A3(2)]
Length = 354
Score = 87.4 bits (213), Expect = 2e-16
Identities = 72/259 (27%), Positives = 125/259 (47%), Gaps = 30/259 (11%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAI-EKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
+ P P L++ +TV TY G + + + + DV G AL+G +GCGK+ T + +
Sbjct: 4 LSSTPAPGLRLEQITV---TYPGHREPVLDGLDLDVADGRLLALLGPSGCGKTTTVQVAS 60
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNE--IAYIFQDPHASLDPLYT 117
L+ +PGR G+V L E+ ++ A +FQ P L P T
Sbjct: 61 GLL-TPGR------------GAV----HLRGTEVTRVPPEHRGAAVVFQQP--MLLPHRT 101
Query: 118 VGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
+A + G+ S ++ A+ L+ V + A R YP +LSGG QRV +
Sbjct: 102 ALDNVAFPARMRGR--SRRDARTSALAHLERVGLGALAAR---YPRQLSGGQAQRVALAR 156
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ P +L+ DEP +ALD +++ + DLL ++ + T +L+TH+ A AD +A+
Sbjct: 157 ALAAEPAVLLLDEPFSALDPSLRHTMRDLLTTVQRELAVTTVLVTHDQTEAASVADTIAL 216
Query: 238 MYAGKIVEIGTVDQIFKNP 256
+ G +++ ++ P
Sbjct: 217 LDRGGLLQQAQPADLYARP 235
>gb|AAA16186.1| (L07065) P-glycoprotein/multidrug resistance protein [Drosophila
melanogaster]
Length = 1283
Score = 87.0 bits (212), Expect = 3e-16
Identities = 72/254 (28%), Positives = 122/254 (47%), Gaps = 21/254 (8%)
Query: 3 KVPEPILQVRNLTVHF-YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
KV EP+ + V F Y V + K++ +++G+T ALVG +GCGKS + + +
Sbjct: 392 KVNEPLTTIEFKEVEFQYPTRPEVSILNKLNLKIHRGQTVALVGPSGCGKSTCIQLVQRF 451
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY-TVGY 120
+ G +L+ +G+ L + +I +R I + Q+P +Y + Y
Sbjct: 452 YDPQA----GNLLF---NGT-----NLKDLDINWLRFLRIGVVGQEPILFATSIYENIRY 499
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
+A +I++ + A+ I K D V +LSGG KQR+ I +
Sbjct: 500 GREDA--TREEIEAARAAANAAIFIKKLPKGYDTL--VGERGAQLSGGQKQRIAIRRALI 555
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
+P IL+ DE T+ALD +A++ L K+ T I++ H L V ADR+ V+
Sbjct: 556 RDPEILLLDEATSALDTASEAKVQAALEKVSA--GRTTIIVAHRLSTV-RRADRIVVINK 612
Query: 241 GKIVEIGTVDQIFK 254
G++VE GT ++ +
Sbjct: 613 GEVVESGTHQELME 626
>pir||A47377 multidrug resistance protein Mdr50 - fruit fly (Drosophila
melanogaster)
Length = 1283
Score = 87.0 bits (212), Expect = 3e-16
Identities = 72/254 (28%), Positives = 122/254 (47%), Gaps = 21/254 (8%)
Query: 3 KVPEPILQVRNLTVHF-YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
KV EP+ + V F Y V + K++ +++G+T ALVG +GCGKS + + +
Sbjct: 392 KVNEPLTTIEFKEVEFQYPTRPEVSILNKLNLKIHRGQTVALVGPSGCGKSTCIQLVQRF 451
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY-TVGY 120
+ G +L+ +G+ L + +I +R I + Q+P +Y + Y
Sbjct: 452 YDPQA----GNLLF---NGT-----NLKDLDINWLRFLRIGVVGQEPILFATSIYENIRY 499
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
+A +I++ + A+ I K D V +LSGG KQR+ I +
Sbjct: 500 GREDA--TREEIEAARAAANAAIFIKKLPKGYDTL--VGERGAQLSGGQKQRIAIRRALI 555
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
+P IL+ DE T+ALD +A++ L K+ T I++ H L V ADR+ V+
Sbjct: 556 RDPEILLLDEATSALDTASEAKVQAALEKVSA--GRTTIIVAHRLSTV-RRADRIVVINK 612
Query: 241 GKIVEIGTVDQIFK 254
G++VE GT ++ +
Sbjct: 613 GEVVESGTHQELME 626
>gi|10955064 motB [Agrobacterium tumefaciens] >gi|3064078|gb|AAC18650.1|
(AF242881) motB [Agrobacterium tumefaciens]
Length = 394
Score = 86.6 bits (211), Expect = 4e-16
Identities = 75/268 (27%), Positives = 130/268 (47%), Gaps = 40/268 (14%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGI------VKAIEKVSFDVYKGETFALVGETGCGKSVT 54
M+ PEP + + + AG+ VK + ++ + GE L+G +G GK+
Sbjct: 26 MQNQPEPAINKLQPSSLPISIAGVTKSYGPVKVLSDINLHIRSGEFMTLLGPSGSGKTTL 85
Query: 55 SRAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEI----RKIRGNEIAYIFQDPHA 110
+ I D GS LK EEE+ +RG + +FQ+
Sbjct: 86 LMTLAGFIRP-------------DFGS----LKFGEEEVILRAPHLRG--VGMMFQN--Y 124
Query: 111 SLDPLYTVGYQIAEAMEVHGKIK-SIKEGIQKAVDILKSVLIPD-PARRVNNYPHELSGG 168
+L P +V IA +++ G+ + +IK ++ D+L++V + +RR++ ELSGG
Sbjct: 125 ALFPHMSVEANIAYPLKIRGEDRETIKARVR---DVLETVQLGGYGSRRIS----ELSGG 177
Query: 169 MKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVV 228
+QR+ + I P+IL+ DEP +ALD ++ + L M E+ T +L+TH+
Sbjct: 178 QRQRIALARAIVFKPKILLMDEPLSALDKNLRELMQLELRTMHEQLGMTTVLVTHDQREA 237
Query: 229 AETADRVAVMYAGKIVEIGTVDQIFKNP 256
+DR+AV+ GKI +I T + ++ P
Sbjct: 238 LTMSDRIAVLRNGKIAQIDTSETLYSEP 265
>gb|AAD53162.1|AF176824_5 (AF176824) ATP-binding protein of ABC transporter SrpK
[Synechococcus PCC7942]
Length = 270
Score = 86.6 bits (211), Expect = 4e-16
Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 24/239 (10%)
Query: 2 RKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
R + ILQ R+LT H+ + V A + ++ ++ GE L+G +GCGKS ++ Q
Sbjct: 13 RSPTDVILQARSLTKHYRSGNHNVTAFKDLTLSLHPGEIVCLLGPSGCGKS----SLLQA 68
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
I S I G++ + L + R I ++FQ+P +L P TV
Sbjct: 69 IASLEPIDAGEIQFLGQP--------LQQPHPR------IGFVFQEP--ALLPWQTVWQN 112
Query: 122 IAEAMEV-HGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
++ +E+ G S + + D L V + R YP +LSGGM QRV + ++
Sbjct: 113 VSFGLELKQGPQLSEAQRRSRISDALNRVGLAGAERA---YPRQLSGGMAQRVALARALA 169
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+P +L+ DEP ALD + ++ LL + V+++TH+L DR+ +M+
Sbjct: 170 RHPHLLLLDEPFAALDAIHRLEMQKLLLEAIAGQTEAVLMVTHDLDEALLLGDRIILMH 228
>gb|AAB51510.1| (U91632) sugar transporter [Agrobacterium tumefaciens]
Length = 512
Score = 85.8 bits (209), Expect = 6e-16
Identities = 70/239 (29%), Positives = 123/239 (51%), Gaps = 21/239 (8%)
Query: 8 ILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGR 67
IL++RN+T T+ G VKA+E V+ V +GE ALVGE G GKS + ++ + P
Sbjct: 5 ILEMRNITK---TFPG-VKALENVNLKVKEGEIHALVGENGAGKSTLMKVLSGVY--PAG 58
Query: 68 IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAEAME 127
EG++ Y +G+V + +++ E +I I +L PL ++ I E
Sbjct: 59 TYEGEIHY---EGAVRNFRAINDSE-------DIGIIIIHQELALVPLLSIAENIFLGNE 108
Query: 128 VHGK-IKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPRIL 186
V + S ++ + ++LK V + + + ++ G +Q V I +S + ++L
Sbjct: 109 VASNGVISWQQTFNRTRELLKKVGLKESPETLIT---DIGVGKQQLVEIAKALSKSVKLL 165
Query: 187 IADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVE 245
I DEPT +L+ + +L+LL + + + T I+ITH L V + AD++ V+ G V+
Sbjct: 166 ILDEPTASLNESDSEALLNLLMEFRNQ-GMTSIIITHKLNEVRKVADQITVLRDGMTVK 223
Score = 71.0 bits (171), Expect = 2e-11
Identities = 69/256 (26%), Positives = 117/256 (44%), Gaps = 34/256 (13%)
Query: 2 RKVP--EPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
R VP E IL+V+N + + + + ++ V KGE + G G G+ T A++
Sbjct: 253 RDVPIGETILEVKNWNAYHQQHRDR-QVLHDINVTVRKGEVVGIAGLMGAGR--TEFAMS 309
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQD-PHASLDPLYTV 118
+S G + G VL DG VD+ +RK +AY+ +D H L
Sbjct: 310 VFGKSYGHRITGDVLI---DGKPVDV-----STVRKAIDAGLAYVTEDRKHLGL------ 355
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKA--VDILKSVLIPDPARR--------VNNYPHELSGG 168
+ +H + G+ KA +D +K + + R + LSGG
Sbjct: 356 ---VLNDNILHNTTLANLAGVSKASIIDDIKEMKVASDFRTRLRIRSSGIFQETVNLSGG 412
Query: 169 MKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVV 228
+Q+VV+ + +NP +LI DEPT +DV + +I ++N++ K V++I+ + +
Sbjct: 413 NQQKVVLSKWLFSNPDVLILDEPTRGIDVGAKYEIYTIINQLAADGKG-VLMISSEMPEL 471
Query: 229 AETADRVAVMYAGKIV 244
DR+ VM G+IV
Sbjct: 472 LGNCDRIYVMNEGRIV 487
>gb|AAD02045.1| (AF035964) ATP-binding protein B [Brucella abortus]
Length = 621
Score = 85.4 bits (208), Expect = 8e-16
Identities = 76/247 (30%), Positives = 119/247 (47%), Gaps = 19/247 (7%)
Query: 3 KVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
KV E +++R++T H+ AG+ ++ ++ V GE LVG +G GKS I +L
Sbjct: 364 KVTEAGIEIRHVTFHYGKGAGV---LDNINLTVRGGERVGLVGHSGAGKSTLINLILRLY 420
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASL-DPLYTVGYQ 121
+ + +G +L D + D+ + S + + E A + H SL D +
Sbjct: 421 D----VEQGAILV--DGQDIRDVTQASLRKAFAVVSQETALL----HRSLRDNIMLARDD 470
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
EA V ++ +G ++ + D V +LSGG +QR+ I I
Sbjct: 471 ATEAELVQAAQQAEADGFIANLEDFQGRRSFDAF--VGERGVKLSGGQRQRIAIARAILK 528
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
+ ILI DE T+ALD ++A I + L ++ E TVI I H L +A T DR+ VM G
Sbjct: 529 DAPILILDEATSALDSQVEASIQENLKQLME--GKTVIAIAHRLSTIA-TLDRLVVMDGG 585
Query: 242 KIVEIGT 248
+IVE GT
Sbjct: 586 RIVEEGT 592
>gb|AAF58271.1| (AE003815) Mdr50 gene product [Drosophila melanogaster]
Length = 1313
Score = 84.3 bits (205), Expect = 2e-15
Identities = 71/255 (27%), Positives = 123/255 (47%), Gaps = 22/255 (8%)
Query: 2 RKVPEPILQVRNLTVHF-YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
+K+ EP+ + V F Y V + K++ +++G+T ALVG +GCGKS + + +
Sbjct: 422 KKLNEPLTTIEFKEVEFQYPTRPEVSILNKLNLKIHRGQTVALVGPSGCGKSTCIQLVQR 481
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY-TVG 119
+ G +L+ +G+ L + +I +R + I + Q+P +Y +
Sbjct: 482 FYDPQA----GNLLF---NGT-----NLKDLDINWLR-SRIGVVGQEPILFATSIYENIR 528
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
Y +A +I++ A+ I K D V +LSGG KQR+ I +
Sbjct: 529 YGREDA--TREEIEAAAAAANAAIFIKKLPKGYDTL--VGERGAQLSGGQKQRIAIARAL 584
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
+P IL+ DE T+ALD +A++ L K+ T I++ H L V ADR+ V+
Sbjct: 585 IRDPEILLLDEATSALDTASEAKVQAALEKVSA--GRTTIIVAHRLSTV-RRADRIVVIN 641
Query: 240 AGKIVEIGTVDQIFK 254
G++VE GT ++ +
Sbjct: 642 KGEVVESGTHQELME 656
>pir||E72314 ribose ABC transporter, ATP-binding protein - Thermotoga maritima
(strain MSB8) >gi|4981493|gb|AAD36035.1|AE001758_13
(AE001758) ribose ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 523
Score = 83.5 bits (203), Expect = 3e-15
Identities = 77/254 (30%), Positives = 126/254 (49%), Gaps = 30/254 (11%)
Query: 3 KVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
K E +L+ RN+T T+ G++ A+ V+ +YKGE ALVGE G GKS + + +
Sbjct: 7 KEREVLLEARNITK---TFPGVI-AVNNVTLQIYKGEVCALVGENGAGKSTLMKILAGVY 62
Query: 63 -ESPGRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
+ G+I +EG+ + +R+ R+ + N IA I Q+ L P +
Sbjct: 63 PDYEGQIFLEGKEVRFRNP--------------REAQENGIALIPQE--LDLVPNLSSAE 106
Query: 121 QI---AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
I E + G I+ K Q + K + DP +V +LS +Q V I
Sbjct: 107 NIFLSREPVNEFGVIEYQKMFEQASKLFSKLGVNIDPKTKV----EDLSTSQQQMVAIAK 162
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
+S + +I+I DEPT+A+ Q+ +++ +K + K +VI I+H L + E ADRV V
Sbjct: 163 ALSLDAKIIIMDEPTSAIGKRETEQLFNIIRSLKNEGK-SVIYISHRLEEIFEIADRVVV 221
Query: 238 MYAGKIVEIGTVDQ 251
M G+ V G +++
Sbjct: 222 MRDGRKVGEGPIEE 235
>pir||H83346 probable ATP-binding/permease fusion ABC transporter PA2390
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9948431|gb|AAG05778.1|AE004665_5 (AE004665) probable
ATP-binding/permease fusion ABC transporter [Pseudomonas
aeruginosa]
Length = 663
Score = 83.1 bits (202), Expect = 4e-15
Identities = 80/259 (30%), Positives = 128/259 (48%), Gaps = 28/259 (10%)
Query: 5 PEPILQVRNLTVHFYTYAGI----VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
P P++++R++ Y G V+ ++ VS ++ GE A+VG +G GKS T I
Sbjct: 7 PVPLIELRDIRKR---YGGNGTPEVEVLKGVSLSIHAGEFVAIVGASGSGKS-TLMNILG 62
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGY 120
++ P G Y G D+ +L +E +R ++FQ H L P +
Sbjct: 63 CLDRPS---SGS---YHFAGH--DVAELDSDEQAWLRREAFGFVFQGYH--LIPSASAQE 112
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGIS 180
+ E ++ I + E +A +L+ + + A R N PH+LSGG +QRV I +
Sbjct: 113 NV-EMPAIYAGIPA-SERHTRARALLERLGL---AERTANRPHQLSGGQQQRVSIARALM 167
Query: 181 NNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYA 240
N I++ADEPT ALD A+++ LL+++ + VILITH+ V A A R+ +
Sbjct: 168 NGGHIILADEPTGALDSHSGAEVMALLDELASQ-GHVVILITHDRDVAAR-AKRIIEVRD 225
Query: 241 GKIVEIGTVDQIFKNPLHP 259
G+IV D+ P HP
Sbjct: 226 GEIVSDSANDE---RPAHP 241
>pir||T36431 probable ABC-type transport system ATP-binding protein -
Streptomyces coelicolor >gi|5459222|emb|CAB48895.1|
(AL096837) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 264
Score = 82.7 bits (201), Expect = 5e-15
Identities = 71/242 (29%), Positives = 112/242 (45%), Gaps = 22/242 (9%)
Query: 5 PEPILQVRNLTVHFYTYAGI---VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
P P + L TY V A++ V+ + +G A++G +G GKS + L
Sbjct: 15 PGPASEALRLVKVTRTYGSADNAVTALDGVTLSLGRGTFTAVMGPSGSGKSTLLQCAAGL 74
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQ 121
IV DG +L E E+ K R + ++FQ +L TV
Sbjct: 75 DRPDSGIV-------CVDGK--ELTGGGEAELTKFRRGRVGFVFQQ--YNLLETLTVAQN 123
Query: 122 IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISN 181
+++ G+ K +A ++L SV + D R+ + P +LSGG +QRV I +
Sbjct: 124 TVLPLKLAGRRVDRK----RAREVLTSVGLGD---RLGHRPDQLSGGQRQRVAIARALVT 176
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
PR++ ADEPT ALD Q+L LL + + TV+++TH+ V A AD V + G
Sbjct: 177 EPRVIFADEPTGALDTRSARQVLLLLQEAARVHGRTVVMVTHD-PVAASYADSVVFLADG 235
Query: 242 KI 243
++
Sbjct: 236 RL 237
>pir||T26313 hypothetical protein W09D6.6 - Caenorhabditis elegans
>gi|3880598|emb|CAB04947.1| (Z82078) predicted using
Genefinder~contains similarity to Pfam domain: PF00005
(ABC transporter), Score=210.9, E-value=6.1e-60,
N=1~cDNA EST yk4g6.5 comes from this gene~cDNA EST
yk10f3.5 comes from this gene~cDNA EST yk135g3.5 comes
from this gene~cD>
Length = 772
Score = 82.3 bits (200), Expect = 7e-15
Identities = 75/255 (29%), Positives = 116/255 (45%), Gaps = 46/255 (18%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P + V+NLT + T ++K +SF++ G+T ALVG +G GKS R + +L ES
Sbjct: 517 PRGTISVKNLTFEYNTGLPVIK---NISFEIGNGQTVALVGSSGSGKSTLIRLLFRLFES 573
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPL-YTVGY--- 120
EG + + DG +D+ + +R+ +I + QD D + Y + +
Sbjct: 574 ----TEGSIEF---DG--IDVRNYTMHSLRQ----QIGIVPQDTVLFNDTIMYNIRFGRP 620
Query: 121 --------QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQR 172
+ A+A +H KI S+ EG A V +LSGG KQR
Sbjct: 621 DASDEEVIEAAKAAMIHEKITSLPEGY---------------ATMVGERGLKLSGGEKQR 665
Query: 173 VVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETA 232
V I I P+ + DE T+ALD + I L K+ + T +++ H L V A
Sbjct: 666 VAIARTILKKPQFIFLDEATSALDTPTERAIQKCLEKLCK--SRTGVVVAHRLSTVV-NA 722
Query: 233 DRVAVMYAGKIVEIG 247
D + V+ G I+E G
Sbjct: 723 DLILVLDKGIILERG 737
>pir||T18939 hypothetical protein C05A9.1 - Caenorhabditis elegans
>gi|3874030|emb|CAA94202.1| (Z70265) Similarity to
C.elegans p-glycoprotein (SW:MDR1_CAEEL), contains
similarity to Pfam domain: PF00005 (ABC transporter),
Score=413.1, E-value=8.4e-121, N=2; PF00664 (ABC
transporter transmembrane region.), Score=192.1,
E-value=2.9e-54, N=2~cDNA >
Length = 1283
Score = 81.9 bits (199), Expect = 9e-15
Identities = 70/232 (30%), Positives = 116/232 (49%), Gaps = 27/232 (11%)
Query: 25 VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVD 84
V ++++SF+V GE ALVG +G GKS + QL+ I G++ DG+ D
Sbjct: 420 VPVLKEISFNVQGGECIALVGASGSGKST----VIQLLLHYYNIDSGRISI---DGN--D 470
Query: 85 LLKLSEEEIRKIRGNEIAYIFQDP---HASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQK 141
+ ++ +++R+ G +FQ+P + S++ G A E+ +K+
Sbjct: 471 IYNINIKQLRQAMG----VVFQEPVLFNTSIEENIRFGKPDATEQEIIDALKNAN----- 521
Query: 142 AVDILKSVLIPDPARR-VNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQ 200
A D + + PD + V +LSGG KQR+ I + NPRIL+ DE T+ALD +
Sbjct: 522 AFDFVCN--FPDGIKTIVGERGAQLSGGQKQRIAIARTLVRNPRILLLDEATSALDNESE 579
Query: 201 AQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIVEIGTVDQI 252
+ + L K T I++ H L + A+++ VM G+IVE+G Q+
Sbjct: 580 FIVQEAL--QKASIGRTTIVVAHRLSTI-RNANKIIVMEKGEIVEVGDHKQL 628
Score = 76.1 bits (184), Expect = 5e-13
Identities = 68/263 (25%), Positives = 124/263 (46%), Gaps = 39/263 (14%)
Query: 2 RKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
R + ++++N++ Y ++ VS + G T ALVG +G GKS I L
Sbjct: 1029 RNIKNGEIELKNVSFE-YAQRSDKMILDGVSLKLPAGRTLALVGPSGSGKST----IISL 1083
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDP---HASLDPLYTV 118
+E V+G+V D+ +VVD+ + +R ++ + Q+P + S+ +
Sbjct: 1084 LERFYHAVDGEVKI--DEENVVDV------NLHHLR-ESVSLVSQEPVLFNCSIKENFLF 1134
Query: 119 GY-------QIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQ 171
G +I +A++V + + + +D L V +LSGG KQ
Sbjct: 1135 GISHNASQLEIDQALKVANAFSFVSQ-FPQGLDTL-----------VGERGAQLSGGQKQ 1182
Query: 172 RVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAET 231
R+ I I NP++L+ DE T+ALD + + + L+ E + + +++ H L V
Sbjct: 1183 RIAIARAILRNPKVLLLDEATSALDSDSEKVVQNALDTASE--RLSTVVVAHRLSTVV-N 1239
Query: 232 ADRVAVMYAGKIVEIGTVDQIFK 254
AD +AV+ GK+ E GT +++ +
Sbjct: 1240 ADSIAVLKNGKVAEQGTHEELLR 1262
>pir||S74440 iron(III) dicitrate transport system permease protein fecE -
Synechocystis sp. (strain PCC 6803)
>gi|1651664|dbj|BAA16592.1| (D90899) iron(III) dicitrate
transport system permease protein FecE [Synechocystis
sp.]
Length = 268
Score = 81.1 bits (197), Expect = 2e-14
Identities = 72/277 (25%), Positives = 127/277 (44%), Gaps = 26/277 (9%)
Query: 1 MRKVPEPI-LQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
M V PI L R L++ + ++ I+ + + +GE LVG GCGKS R +
Sbjct: 1 MLDVATPIALTTRKLSLAYDSHL----IIQGLDLAINQGEITTLVGPNGCGKSTLLRGMA 56
Query: 60 QLIESPGRIV--EGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYT 117
+L++ G V EG+ + + L +E+ K + + Q P A T
Sbjct: 57 RLLKPQGGTVYLEGEAIAH-----------LPTKELAK----RLGILPQSPPAPEG--LT 99
Query: 118 VGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
V +A+ H + Q + + +++ D + N LSGG +QR I +
Sbjct: 100 VRELVAQGRYPHQNWLQ-QWSKQDELKVEEAIATTDLHQFANRPLDSLSGGQRQRAWIAM 158
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ + IL+ DEPTT LD+ Q ++LDLL+ + + T++++ H+L + + R+
Sbjct: 159 ALAQDTEILLLDEPTTYLDLAHQIEVLDLLHWLNREAGRTIVMVLHDLNLACRYSHRLIA 218
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGL-LRAVPNPLT 273
+ GK++ G I L GL R + +P+T
Sbjct: 219 LRDGKLLAQGRPQAIVTEELVRQVFGLESRIIADPVT 255
>dbj|BAB07160.1| (AP001518) L-arabinose ABC transporter (ATP-binding protein)
[Bacillus halodurans]
Length = 517
Score = 80.4 bits (195), Expect = 3e-14
Identities = 68/243 (27%), Positives = 113/243 (45%), Gaps = 21/243 (8%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+P +L++RN+T F VKA+ V+ V +GE ALVGE G GKS + ++ +
Sbjct: 3 MPNCLLEMRNITKAFPG----VKALNNVNLKVEQGEIHALVGENGAGKSTLMKVLSGVY- 57
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
P EG +L+ +G V + E E ++ + +L P ++ I
Sbjct: 58 -PHGTYEGDILF---EGRVCQFKDIKESE-------QLGIVIIHQELALVPELSIAENIF 106
Query: 124 EAME-VHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
E + + I +A +LK V + D R + + G +Q V I +S
Sbjct: 107 LGNEQAKNGVIDWNQTITEAAKLLKKVGLSDSPRTL---AMNIGVGKQQLVEIAKALSKK 163
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
++LI DEPT AL+ +L LL + K K T I+I+H L ++ AD + ++ G+
Sbjct: 164 VKLLILDEPTAALNEEDSQNLLHLLLEFK-KQGMTSIIISHKLNEISYVADHLTILRDGQ 222
Query: 243 IVE 245
+E
Sbjct: 223 SIE 225
>sp|P55453|Y4FO_RHISN PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN Y4FO
>gi|2182398|gb|AAB91671.1| (AE000073) Y4fO [Rhizobium
sp. NGR234]
Length = 339
Score = 79.2 bits (192), Expect = 6e-14
Identities = 66/261 (25%), Positives = 121/261 (46%), Gaps = 30/261 (11%)
Query: 2 RKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
R + + +L + L V F + + ++ DV G +L+G +G GKS R I L
Sbjct: 6 RAMADSVLSLNKLDVGFPG----MTVVRDLNLDVADGAFVSLLGPSGSGKSSVLRTIAGL 61
Query: 62 IESPGR--IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
+ + G ++EGQ D+ L E + +FQ+ +L P +
Sbjct: 62 LPALGGRVLLEGQ-----------DITALPPER------RNVGIVFQN--YALFPTMSAF 102
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
IA A+ V K K+ E ++ ++ + I D +++ P +SGG +QRV I +
Sbjct: 103 ENIAFALRVAKKSKAEVE--RRVGEVAEMAGISD---QLDKKPANMSGGQQQRVAIARAL 157
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
R+L+ DEP + LD ++A + + +++ + T I +TH+ +D + V+
Sbjct: 158 VTGSRVLLFDEPLSNLDAKVRAAMRKEIKRLQSELGFTAIFVTHDQEDALTMSDLIVVLN 217
Query: 240 AGKIVEIGTVDQIFKNPLHPY 260
GKI +IG +++ P P+
Sbjct: 218 HGKIEQIGDGRTLYRKPATPF 238
>pir||T21267 hypothetical protein F22E10.2 - Caenorhabditis elegans
>gi|3876292|emb|CAA91800.1| (Z67882) contains similarity
to Pfam domain: PF00005 (ABC transporter), Score=436.2,
E-value=9.4e-128, N=2; PF00664 (ABC transporter
transmembrane region.), Score=221.5, E-value=4e-63, N=2
[Caenorhabditis elegans]
Length = 1291
Score = 79.2 bits (192), Expect = 6e-14
Identities = 71/264 (26%), Positives = 123/264 (45%), Gaps = 44/264 (16%)
Query: 2 RKVPEPILQVRNLTVHF-YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
+K+ + + +V VHF Y K + ++ V G + ALVG +GCGKS + +T+
Sbjct: 375 KKIEKVVGKVTFENVHFRYPTRKEAKVLNGLNLTVEPGTSVALVGHSGCGKSTSVGLLTR 434
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRG---------NEIAY---IFQDP 108
L E +G V + DG VD+ L+ E +R + G N+ + +F +P
Sbjct: 435 LYEPE----QGSV---QIDG--VDVRDLNLEWLRNVVGIVQQEPILFNDTIHNNLLFGNP 485
Query: 109 HASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGG 168
A+ + + ++ + H IK + +G ++ + +LSGG
Sbjct: 486 DATRETMI----RVCKMANAHDFIKKMPKGYDT---------------QIGDGGVQLSGG 526
Query: 169 MKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVV 228
KQRV I + +P++L+ DE T+ALD ++ + LN + T I+I H L +
Sbjct: 527 QKQRVAIARTLIRDPKVLLLDEATSALDAQSESVVQSALNNASK--GRTTIMIAHRLSTI 584
Query: 229 AETADRVAVMYAGKIVEIGTVDQI 252
E AD++ G IVE G +++
Sbjct: 585 RE-ADKIVFFEKGVIVEAGNHEEL 607
>pir||G75142 abc transporter, ATP-binding protein PAB2147 - Pyrococcus abyssi
(strain Orsay) >gi|5457732|emb|CAB49222.1| (AJ248284)
ABC transporter, ATP-binding protein [Pyrococcus abyssi]
Length = 579
Score = 78.4 bits (190), Expect = 1e-13
Identities = 71/255 (27%), Positives = 128/255 (49%), Gaps = 32/255 (12%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P ++ R++ + ++T ++K VSF V GE + G G GKS +I +LI
Sbjct: 335 PRGEIEFRDVWLTYHTGRTVLKG---VSFKVKPGEKVLITGPPGSGKS----SILKLIAR 387
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
+ +G+VL DG V++ K+ E +RKI +AY+ Q+P + I E
Sbjct: 388 FYKPTKGEVLI---DG--VNVAKIKTENLRKI----VAYVPQEP-------FIFNRSIRE 431
Query: 125 AMEVHGKIKSIKEGIQKAVDILK-----SVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
+ + K + +E +++A I K + L V LSGG +QR+ + +
Sbjct: 432 NIAL-AKPNATQEEVERAAKIAKIHDFIASLPKGYDTVVGEKGITLSGGQRQRIALARAM 490
Query: 180 SNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMY 239
NP+I++ D+P + LD + ++++ L ++ + T ++++ L +V + DRV VM
Sbjct: 491 LMNPKIVLLDDPVSNLDAETEKKLVEDLKEILQ--DKTALIVSQRLSLV-KLVDRVIVMK 547
Query: 240 AGKIVEIGTVDQIFK 254
GKIVE G +++ K
Sbjct: 548 DGKIVEDGKPEELIK 562
>pir||G81022 ABC transporter, ATP-binding protein NMB1966 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7227226|gb|AAF42295.1| (AE002544) ABC transporter,
ATP-binding protein [Neisseria meningitidis MC58]
Length = 266
Score = 78.0 bits (189), Expect = 1e-13
Identities = 69/249 (27%), Positives = 126/249 (49%), Gaps = 22/249 (8%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P P ++++++ + G ++ ++F + +G A++G +G GK+ R IT I
Sbjct: 3 PSPFIEMKDVAFAY----GDRPILKNINFSIPQGNFAAVMGGSGSGKTTLMRLITGQI-- 56
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
R GQVL +G DL S +E+ + R + +FQ H +L +V IA
Sbjct: 57 --RPQSGQVLI---EGR--DLAGFSADELYEHR-RRMGVLFQ--HGALFTDLSVFDNIAF 106
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNY-PHELSGGMKQRVVIGIGISNNP 183
M ++ + E + + + +LK + R V N P ELSGGM +RV + I+ +P
Sbjct: 107 PMR---ELTRLPEAVIRDLVLLKLNAVG--LRGVENLMPSELSGGMSRRVALARTIALDP 161
Query: 184 RILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKI 243
I++ DEP T LD I L++++ + ++T I++TH++ E D+V + G+I
Sbjct: 162 EIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSIMVTHDIEKSLEIVDQVIFLAHGEI 221
Query: 244 VEIGTVDQI 252
+ G+ ++
Sbjct: 222 MFSGSPQEM 230
>dbj|BAA75396.1| (AB013378) YhaQ [Bacillus halodurans]
Length = 314
Score = 77.6 bits (188), Expect = 2e-13
Identities = 65/248 (26%), Positives = 117/248 (46%), Gaps = 31/248 (12%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P I++ N+T F G A+ +++ +V +GE + +G G GKS T R + ++++
Sbjct: 9 PMEIVKATNVTKRF----GAFTALNRINLEVQRGEIYGFIGPNGAGKSTTIRILLGILKA 64
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
EG+ + D + EI K +AY+ D SL P T G I
Sbjct: 65 S----EGEAKIFGKD------VWSDAVEIHK----HLAYVPGD--VSLWPNLTGGEVIDL 108
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
M++ G + +K D DP+++ Y S G +Q+V + ++
Sbjct: 109 FMKLRGSVD------KKRRDHFIERFKLDPSKKCRTY----SKGNRQKVALVAAFASGAD 158
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
+ I DEPT+ LD ++ + + + KE K +V+L +H L V D+V ++ G+++
Sbjct: 159 LYILDEPTSGLDPLMERVFQECVLEAKEAGK-SVLLSSHILSEVERLCDKVGIIRQGEMI 217
Query: 245 EIGTVDQI 252
E GT+D++
Sbjct: 218 ETGTLDEL 225
>pir||T10656 probable ABC-type transport protein T5F17.70 - Arabidopsis thaliana
>gi|7269717|emb|CAB81450.1| (AL161573) ABC
transporter-like protein [Arabidopsis thaliana]
>gi|9964119|gb|AAG09828.1|AF287698_1 (AF287698)
half-molecule ABC transporter ATM2 [Arabidopsis
thaliana]
Length = 680
Score = 77.6 bits (188), Expect = 2e-13
Identities = 74/256 (28%), Positives = 119/256 (45%), Gaps = 35/256 (13%)
Query: 2 RKVPEPILQVRNLT---VHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAI 58
RK+P +L+ +++ VHF +Y K ++ +SF+V G++ A+VG +G GKS R I
Sbjct: 427 RKLPPLVLKGGSISFENVHF-SYLPERKILDGISFEVPAGKSVAIVGSSGSGKSTILRMI 485
Query: 59 TQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIR----GNEIAYIFQDPHASLDP 114
+ + D G+V K+ ++I+++R + I + QD D
Sbjct: 486 FRFFDV-------------DSGNV----KIDGQDIKEVRLESLRSSIGVVPQDTVLFNDT 528
Query: 115 LY-TVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDP-ARRVNNYPHELSGGMKQR 172
++ + Y A E + + ++A + PD + V LSGG KQR
Sbjct: 529 IFHNIHYGNLSATE-----EEVYNAARRAAIHDTIMKFPDKYSTAVGERGLMLSGGEKQR 583
Query: 173 VVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETA 232
V + +P IL+ DE T+ALD +A+I+ L + T I I H L A
Sbjct: 584 VALARAFLKSPAILLCDEATSALDSKTEAEIMKTLRSLAS--NRTCIFIAHRL-TTAMQC 640
Query: 233 DRVAVMYAGKIVEIGT 248
D + VM GK+VE GT
Sbjct: 641 DEILVMEKGKVVEKGT 656
>pir||T22094 hypothetical protein ZK455.7 - Caenorhabditis elegans
>gi|3877009|emb|CAA91467.1| (Z66562) multidrug
resistance protein 3 (p-glycoprotein C), contains
similarity to Pfam domain: PF00005 (ABC transporter),
Score=417.1, E-value=5.3e-122, N=2; PF00664 (ABC
transporter transmembrane region.), Score=489.5,
E-value=8.5e-144, N=2~cDNA EST >
>gi|3881645|emb|CAA91495.1| (Z66567) multidrug
resistance protein 3 (p-glycoprotein C), contains
similarity to Pfam domain: PF00005 (ABC transporter),
Score=417.1, E-value=5.3e-122, N=2; PF00664 (ABC
transporter transmembrane region.), Score=489.5,
E-value=8.5e-144, N=2~cDNA EST >
Length = 1268
Score = 77.3 bits (187), Expect = 2e-13
Identities = 74/261 (28%), Positives = 113/261 (42%), Gaps = 39/261 (14%)
Query: 3 KVPEPILQVRNLTVHFYTYAGI--VKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
K+PE I +TY +K ++ VSF+V GET ALVG +GCGKS + + +
Sbjct: 367 KIPEKIQGKLTFDGIEFTYPTRPELKILKGVSFEVNPGETVALVGHSGCGKSTSIGLLMR 426
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDP---------HAS 111
+++ +D + + E IR +R I + Q+P +
Sbjct: 427 FYNQCAGMIK------------LDGIPIQEYNIRWLRST-IGIVQQEPIIFVATVAENIR 473
Query: 112 LDPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQ 171
+ + I EA K+ + E I K D +V+ +LSGG KQ
Sbjct: 474 MGDVLITDQDIEEAC----KMANAHEFICKLSDRYDTVIGAGAV--------QLSGGQKQ 521
Query: 172 RVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAET 231
RV I I P+IL+ DE T+ALD + + L+K E T + I H L +
Sbjct: 522 RVAIARAIVRKPQILLLDEATSALDTESERMVQTALDKASE--GRTTLCIAHRLSTI-RN 578
Query: 232 ADRVAVMYAGKIVEIGTVDQI 252
A ++ V G I E GT D++
Sbjct: 579 ASKILVFDQGLIAERGTHDEL 599
Score = 73.4 bits (177), Expect = 4e-12
Identities = 71/216 (32%), Positives = 106/216 (48%), Gaps = 29/216 (13%)
Query: 38 GETFALVGETGCGKSVTSRAITQLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIR 97
G+T ALVG +GCGKS T QLIE + G V DD + DL ++ +R
Sbjct: 1057 GQTVALVGPSGCGKSTT----IQLIERYYDALCGSVKI--DDSDIRDL------SVKHLR 1104
Query: 98 GNEIAYIFQDPHASLDPLYTVGYQIAEAMEVHGKIKSIKEGIQKAVDILK----SVLIPD 153
N IA + Q+P +L L T+ I +E ++ ++KA + + +PD
Sbjct: 1105 DN-IALVGQEP--TLFNL-TIRENITYGLE-----NITQDQVEKAATLANIHTFVMGLPD 1155
Query: 154 P-ARRVNNYPHELSGGMKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKE 212
V LSGG KQRV I I +P+IL+ DE T+ALD + + + L+ K
Sbjct: 1156 GYDTSVGASGGRLSGGQKQRVAIARAIVRDPKILLLDEATSALDTESEKIVQEALD--KA 1213
Query: 213 KYKATVILITHNLGVVAETADRVAVMYAGKIVEIGT 248
+ T ++I H L + + AD++ V GK +E GT
Sbjct: 1214 RLGRTCVVIAHRLSTI-QNADKIIVCRNGKAIEEGT 1248
>pir||S72783 probable ABC-type transport protein B1496_F3_97 - Mycobacterium
leprae >gi|466902|gb|AAA17147.1| (U00013) abc2;
B1496_F3_97 [Mycobacterium leprae]
>gi|2398710|emb|CAB16175.1| (Z99125) ABC-type
transporter [Mycobacterium leprae]
Length = 315
Score = 76.9 bits (186), Expect = 3e-13
Identities = 59/250 (23%), Positives = 110/250 (43%), Gaps = 31/250 (12%)
Query: 3 KVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
+ PE ++++R + H+ G + A+ + D++ E AL+G G GK+ T
Sbjct: 9 ETPEVVIRLRGVCKHY----GSILAVSNLDLDIHSAEVLALLGPNGAGKTTTVE------ 58
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
+ EG + R D +++L L I + Q GY
Sbjct: 59 -----MCEG---FVRPDAGTIEVLGLDPITDNARLRARIGVMLQGGG---------GYPA 101
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
A A E+ + S +L+++ + D AR LSGG +QR+ + +
Sbjct: 102 ARAGEMLNLVASYAADPLDPEWLLETLGLTDVARTTYR---RLSGGQQQRLALACTLVGR 158
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
P ++ DEPT +D + + +L++ ++ + TV+L TH L E ADR+ ++ G+
Sbjct: 159 PELVFLDEPTAGMDTHARLLVWELIDTLR-RDGVTVVLTTHQLKEAEELADRLVIIDHGR 217
Query: 243 IVEIGTVDQI 252
++ GT ++
Sbjct: 218 MIAAGTPTEL 227
>gb|AAD02044.1| (AF035964) ATP-binding protein A [Brucella abortus]
Length = 622
Score = 76.9 bits (186), Expect = 3e-13
Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 37/260 (14%)
Query: 3 KVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLI 62
KV L + H+ G++K +S + G+ LVG +G GKS + +
Sbjct: 359 KVARGDLDFDEIGFHYGRGKGVIK---NLSLTIPAGQKVGLVGRSGAGKSTLVNLLLRFY 415
Query: 63 ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
+ + +G++L DG D+ +++++ +R I + QD ++ ++
Sbjct: 416 D----LEKGRILI---DGQ--DISQVTQDSLRA----NIGMVTQDT--------SLLHRS 454
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKS-VLIP---DPARRVNNYPH------ELSGGMKQR 172
++G+ + +E +Q+A+ + ++ IP DP R H +LSGG +QR
Sbjct: 455 VRENIMYGRPDASEEMLQQAIRLAQADQFIPQLVDPKGRRGLDAHVGERGVKLSGGQRQR 514
Query: 173 VVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETA 232
+ I + + ILI DE T+ALD ++A I D LN + E TVI I H L +A
Sbjct: 515 IAIARVMLKDAPILILDEATSALDSEVEAAIQDSLNTLME--GKTVIAIAHRLSTIA-AL 571
Query: 233 DRVAVMYAGKIVEIGTVDQI 252
DR+ VM G+IVE GT +++
Sbjct: 572 DRLVVMDKGRIVEDGTHEEL 591
>pir||B81966 probable ABC transport ATP-binding protein NMA0485 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379229|emb|CAB83778.1| (AL162753) putative ABC
transport ATP-binding protein [Neisseria meningitidis
Z2491]
Length = 286
Score = 76.5 bits (185), Expect = 4e-13
Identities = 65/251 (25%), Positives = 126/251 (49%), Gaps = 26/251 (10%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT-QLIE 63
P P ++++++ + G + ++F + +G A++G +G GK+ R IT Q+
Sbjct: 23 PSPFIEMKDVAFAY----GDRPILNDINFSIPQGNFAAVMGGSGSGKTTLMRLITGQIRP 78
Query: 64 SPGRI-VEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
G++ +EG+ DL S +E+ + R + +FQ H +L +V I
Sbjct: 79 QSGKVLIEGR-----------DLAGFSADELYEHR-RRMGVLFQ--HGALFTDLSVFDNI 124
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNY-PHELSGGMKQRVVIGIGISN 181
A M ++ + E + + + +LK + R V N P ELSGGM +RV + I+
Sbjct: 125 AFPMR---ELTRLPEAVIRDLVLLKLNAVG--LRGVENLMPSELSGGMSRRVALARTIAL 179
Query: 182 NPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAG 241
+P I++ DEP T LD I L++++ + ++T +++TH++ E D+V + G
Sbjct: 180 DPEIMLYDEPFTGLDPISLGVIAHLISRVNKALRSTSVMVTHDIEKSLEIVDQVIFLAHG 239
Query: 242 KIVEIGTVDQI 252
+I+ G+ ++
Sbjct: 240 EIMFSGSPQEM 250
>dbj|BAB06054.1| (AP001515) ABC transporter (ATP-binding protein) [Bacillus
halodurans]
Length = 599
Score = 76.5 bits (185), Expect = 4e-13
Identities = 70/254 (27%), Positives = 124/254 (48%), Gaps = 32/254 (12%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+ E ++ RN++ ++Y G ++ +SF V KGET ALVG TG GK+ +I ++
Sbjct: 348 IGEGNVEFRNVS---FSYDGKTNVLKNISFTVKKGETVALVGHTGSGKT----SIINVLM 400
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
+ +G++L +D L+ E ++R ++ + QDP LYT IA
Sbjct: 401 RFYPLQDGEIL--------IDGKPLTSFENNELRA-KVGLVLQDPF-----LYT--GTIA 444
Query: 124 EAMEVHGKIKSIKEGIQKAVDILKS-----VLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
+ ++ + S + I++A +++ L +V S G +Q +
Sbjct: 445 SNIRLYDQAIS-DDRIKRAASFVRADGFIERLSHGYETKVTERGATFSSGQRQLLSFART 503
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ P ILI DE T ++D + I + L +MK+ T I I H L + + AD++ V+
Sbjct: 504 MVREPAILILDEATASVDTETEEAIQEALERMKQ--GRTTIAIAHRLSTIKD-ADQILVL 560
Query: 239 YAGKIVEIGTVDQI 252
+ G+IVE GT D++
Sbjct: 561 HQGEIVERGTHDEL 574
>pir||T10657 probable ABC-type transport protein T5F17.80 - Arabidopsis thaliana
>gi|7269718|emb|CAB81451.1| (AL161573) ABC
transporter-like protein [Arabidopsis thaliana]
Length = 677
Score = 76.1 bits (184), Expect = 5e-13
Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 27/251 (10%)
Query: 3 KVPEPILQVRNLT---VHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
K+P +L+ +++ VHF +Y K ++ +SF+V G++ A+VG +G GKS R I
Sbjct: 425 KLPPLVLRGGSISFENVHF-SYLPERKILDGISFEVPAGKSVAIVGSSGSGKSTILRMIF 483
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY-TV 118
+ ++ V R DG D+ +++ E +R I + QD D ++ +
Sbjct: 484 RFFDTDSGNV-------RIDGQ--DIKEVTLESLRSC----IGVVPQDTVLFNDTIFHNI 530
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDP-ARRVNNYPHELSGGMKQRVVIGI 177
Y A E + + + ++AV + PD + V LSGG KQRV +
Sbjct: 531 HYGNLSATE-----EEVYDAARRAVIHDTIMKFPDKYSTAVGERGLMLSGGEKQRVALAR 585
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
+P IL+ DE T ALD +A+I+ + T I I H L A D + V
Sbjct: 586 AFLKSPAILLCDEATNALDSKTEAEIMKTFRSLAS--NRTCIFIAHRL-TTAMQCDEIIV 642
Query: 238 MYAGKIVEIGT 248
M GK+VE GT
Sbjct: 643 MEKGKVVEKGT 653
>gb|AAG09827.1|AF287697_1 (AF287697) half-molecule ABC transporter ATM1 [Arabidopsis
thaliana]
Length = 678
Score = 76.1 bits (184), Expect = 5e-13
Identities = 74/251 (29%), Positives = 117/251 (46%), Gaps = 27/251 (10%)
Query: 3 KVPEPILQVRNLT---VHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
K+P +L+ +++ VHF +Y K ++ +SF+V G++ A+VG +G GKS R I
Sbjct: 426 KLPPLVLRGGSISFENVHF-SYLPERKILDGISFEVPAGKSVAIVGSSGSGKSTILRMIF 484
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY-TV 118
+ ++ V R DG D+ +++ E +R I + QD D ++ +
Sbjct: 485 RFFDTDSGNV-------RIDGQ--DIKEVTLESLRSC----IGVVPQDTVLFNDTIFHNI 531
Query: 119 GYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDP-ARRVNNYPHELSGGMKQRVVIGI 177
Y A E + + + ++AV + PD + V LSGG KQRV +
Sbjct: 532 HYGNLSATE-----EEVYDAARRAVIHDTIMKFPDKYSTAVGERGLMLSGGEKQRVALAR 586
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
+P IL+ DE T ALD +A+I+ + T I I H L A D + V
Sbjct: 587 AFLKSPAILLCDEATNALDSKTEAEIMKTFRSLAS--NRTCIFIAHRL-TTAMQCDEIIV 643
Query: 238 MYAGKIVEIGT 248
M GK+VE GT
Sbjct: 644 MEKGKVVEKGT 654
>emb|CAC11370.1| (AL445063) gliding motility protein related [Thermoplasma
acidophilum]
Length = 305
Score = 76.1 bits (184), Expect = 5e-13
Identities = 67/246 (27%), Positives = 114/246 (46%), Gaps = 28/246 (11%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+P+ +++V +L TY G ++ VSF V KGE + L+G+ G GK+ T R +T ++
Sbjct: 1 MPDKVIEVEHLR---QTYDGRTFVVDDVSFYVLKGEIYGLLGKNGAGKTTTIRTMTTILP 57
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
++Y G V L E KIR I + Q+ +
Sbjct: 58 ----------VHY---GKVRILGMDVSENAEKIR-RRIGVVLQNESFDF-------ASVE 96
Query: 124 EAMEVHGKIKSIKEGIQKA-VDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNN 182
++V+G + + + KA ++ + V R+V ELSGG K+R+ + ++
Sbjct: 97 RNLKVYGMLWDVPREVLKARIEEVLEVFDLGQLRKVR--AMELSGGQKKRLQVAREFLHD 154
Query: 183 PRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGK 242
+L DEPT LD ++ +L+ + + K + TV+ T + DR+A+M GK
Sbjct: 155 MDLLFLDEPTVGLDPIMRRSVLNYI-RDKARKGLTVLYTTQIMEEADYLCDRIAIMNRGK 213
Query: 243 IVEIGT 248
IV GT
Sbjct: 214 IVAEGT 219
>pir||S74597 ABC-type transport protein sll1041 - Synechocystis sp. (strain PCC
6803) >gi|1651822|dbj|BAA16749.1| (D90900) ABC
transporter [Synechocystis sp.]
Length = 260
Score = 75.3 bits (182), Expect = 9e-13
Identities = 73/271 (26%), Positives = 121/271 (43%), Gaps = 38/271 (14%)
Query: 1 MRKVPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
M + +PI++ R ++ F G ++ V +Y GE ++G +G GKS R +
Sbjct: 1 MSEPVQPIIEFRGVSQSF----GRKVILDDVDLKIYPGEAVGVIGPSGTGKSTILRIVAG 56
Query: 61 LI--ESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTV 118
L+ +S IV G +R S+ EE K G + + SL V
Sbjct: 57 LLTPDSGEVIVHG----HRRQRSI--------EEGEKALGVGLVFQQSALFDSLTVAENV 104
Query: 119 GYQIAEAMEVHGK-IKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
G+ + ++ + I++I E + L+ V +P R +P ELSGGM++RV +
Sbjct: 105 GFTLYRDSDLRPREIRAIVE------ENLELVGLPGIGDR---FPAELSGGMRKRVSLAR 155
Query: 178 GISNNPR-------ILIADEPTTALDVTIQAQILDLLNKM--KEKYKATVILITHNLGVV 228
I NP IL+ DEPT LD +I L+ + ++ +++TH +
Sbjct: 156 AIVINPEQHQQYKNILLYDEPTAGLDPVASTRIESLIRHLLSQDHVCCCYLIVTHQFSTI 215
Query: 229 AETADRVAVMYAGKIVEIGTVDQIFKNPLHP 259
T DR+ +Y GKI G+ +K+ HP
Sbjct: 216 DNTTDRIIFLYDGKIQWDGSTADAYKSE-HP 245
>gb|AAD29087.1|AF082879_3 (AF082879) FepC [Yersinia enterocolitica]
Length = 272
Score = 74.5 bits (180), Expect = 2e-12
Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 34/267 (12%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P P L LT+ Y G + + E +S + GE +VG CGKS RA+++L++
Sbjct: 10 PTPRLWAEALTLG---YDGKIIS-ENLSVAIPDGEFTVIVGPNACGKSTLLRALSRLLKP 65
Query: 65 PGR--IVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIF---QDPHASLDPLYTVG 119
I++G+ + D V L L + + G + + + PH L +T
Sbjct: 66 QAGQVILDGKNIASLDTRHVARHLGLLPQSSQAPDGISVLDLVARGRYPHQKLLQQWTQA 125
Query: 120 YQ--IAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGI 177
+ +++AM+ G + E ++VD L SGG +QRV I +
Sbjct: 126 DKQAVSDAMQATG----VSELADRSVDAL-------------------SGGQRQRVWIAM 162
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ +L+ DEPTT LD+ Q +L+L + + +++ T++ + H+L A +
Sbjct: 163 VLAQQTPLLLLDEPTTYLDIAHQIDLLELFSNLNQQHNHTLVAVLHDLNHACRYATHIIA 222
Query: 238 MYAGKIVEIGTVDQIFKNPLHPYTQGL 264
M GKIV G ++ L + G+
Sbjct: 223 MRDGKIVIQGKPREVITADLVEHVFGM 249
>pir||S76856 hypothetical protein - Synechocystis sp. (strain PCC 6803)
>gi|1653858|dbj|BAA18768.1| (D90917) haemolysin
secretion ATP-binding protein [Synechocystis sp.]
Length = 733
Score = 74.1 bits (179), Expect = 2e-12
Identities = 75/251 (29%), Positives = 118/251 (46%), Gaps = 34/251 (13%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE- 63
P+ + +N++ FY Y G VK IE +S + G+ L+G++GCGKS ++ +T L
Sbjct: 495 PQDDIDCQNIS--FY-YPGRVKLIEDLSVTIPGGKVVGLIGKSGCGKSTLAKILTGLYSV 551
Query: 64 SPGRIVEGQVLYYRDDGSVVDLLK----LSEEEIRKIRGNEIAYIFQDPHASLDPLYTVG 119
G I G + D S++ L K +S++ R + P +L+ + +
Sbjct: 552 QAGEINIGN--HSLGDFSLICLRKQVVLVSQDAFFFHRSIIDNFRLSSPDITLEQVISA- 608
Query: 120 YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGI 179
QIA+A E + E I AV +SGG KQR+ I I
Sbjct: 609 CQIAQAHEFVSQFPEQYETILGAVAA------------------NISGGQKQRLAIARAI 650
Query: 180 SNNPRILIADEPTTALDVTIQAQILD-LLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
N+P +LI DE T LD +A++L+ LL K + K T ILI+H V+ AD + +
Sbjct: 651 VNDPAVLILDESTANLDPVTEAEVLNSLLTKRQGK---TTILISHRPKVI-NCADWIIFL 706
Query: 239 YAGKIVEIGTV 249
+GK+ T+
Sbjct: 707 ESGKVKFSNTI 717
>gb|AAC71706.1| (AF061070) PtxA [Pseudomonas stutzeri]
Length = 275
Score = 74.1 bits (179), Expect = 2e-12
Identities = 68/247 (27%), Positives = 112/247 (44%), Gaps = 27/247 (10%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
+ + +L+V L+V Y G V A+ S +GE L+G +G GKS R++ +L+
Sbjct: 6 IQDAVLRVDRLSV---VYPGGVTALRDTSIAFRRGEFTVLLGLSGAGKSTLLRSLNRLVT 62
Query: 64 SPGRIVEGQVLYYRDDGSVV-DLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
G GSV +L +L + A IFQ H ++ + +
Sbjct: 63 PTG-------------GSVTSELGELGSGSALRQHRRRTAMIFQH-HQLIERQSALANVL 108
Query: 123 AEAMEVHGKIKSI----KEGIQKAVDILKSVLIPDPA-RRVNNYPHELSGGMKQRVVIGI 177
+ H ++S+ + + A+ L V + D A RV+ +LSGG +QRV I
Sbjct: 109 TGRLAFHNTLRSLFPLPRADQEIALSCLARVGLADKALSRVD----KLSGGQQQRVGIAR 164
Query: 178 GISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAV 237
++ P I++ADEP +LD ++L LL + ++ T I+ H L ADRV
Sbjct: 165 ALAQQPAIILADEPVASLDPATSVRVLGLLRDICKEDGITAIVSLHQLEYARRFADRVVG 224
Query: 238 MYAGKIV 244
+ +IV
Sbjct: 225 LADSQIV 231
>pir||T21268 hypothetical protein F22E10.3 - Caenorhabditis elegans
>gi|3876293|emb|CAA91801.1| (Z67882) contains similarity
to Pfam domain: PF00005 (ABC transporter), Score=438.6,
E-value=1.7e-128, N=2; PF00664 (ABC transporter
transmembrane region.), Score=275.4, E-value=2.3e-79,
N=2~cDNA EST yk11d11.3 comes from this gene~cDNA EST
yk11d11.5 co>
Length = 1327
Score = 73.4 bits (177), Expect = 4e-12
Identities = 71/266 (26%), Positives = 121/266 (44%), Gaps = 44/266 (16%)
Query: 2 RKVPEPILQVRNLTVHF-YTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQ 60
+++ + +V+ VHF Y K + ++ V G + ALVG +GCGKS + +T+
Sbjct: 420 KRLQNVVGRVKFENVHFRYPSRKDAKILNGLNLVVEPGTSVALVGHSGCGKSTSVGLLTR 479
Query: 61 LIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYT--- 117
L E G V DG+ D+ +L+ E +R N + + Q+P D ++
Sbjct: 480 LYEPEA----GNVTI---DGT--DVRELNIEWLR----NTVGIVQQEPILFNDTIHNNLL 526
Query: 118 VG---------YQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGG 168
+G ++ + H I+ + +G LI D +LSGG
Sbjct: 527 IGNPGSTRETMIEVCKMANAHDFIEKMPKGYD--------TLIGDGGV-------QLSGG 571
Query: 169 MKQRVVIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVV 228
KQRV I + +P++L+ DE T+ALD ++ + LN + T I+I H L +
Sbjct: 572 QKQRVAIARTLIRDPKVLLLDEATSALDAQSESIVQSALNNASK--GRTTIMIAHRLSTI 629
Query: 229 AETADRVAVMYAGKIVEIGTVDQIFK 254
E AD++ G IVE G +++ +
Sbjct: 630 RE-ADKIVFFEKGVIVEAGNHEELVR 654
>pir||T40790 probable permease - fission yeast (Schizosaccharomyces pombe)
>gi|4760347|emb|CAB42370.1| (AL049769) putative permease
[Schizosaccharomyces pombe]
Length = 726
Score = 73.0 bits (176), Expect = 5e-12
Identities = 69/254 (27%), Positives = 116/254 (45%), Gaps = 29/254 (11%)
Query: 4 VPEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIE 63
V + IL RN+ + T + +SFD++ G A+V +G GKS S+ + +
Sbjct: 477 VGKAILSFRNVGFAYPTRPS-ASIFDNLSFDIHPGTNVAIVAPSGGGKSTISQLLLRFYA 535
Query: 64 -SPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQI 122
S G+I+ DG VD+ + + R + + Q+P T+G I
Sbjct: 536 PSSGKILA--------DG--VDISTYNVHQWR----SHFGLVGQEPVLFSG---TIGENI 578
Query: 123 AEAMEVHGKIKSIKEGIQKAVDILK-SVLIPDPAR---RVNNYPHELSGGMKQRVVIGIG 178
A +GK + +E I+ A S ++ P + +V +LSGG KQR+ I
Sbjct: 579 A-----YGKSNASQEEIEDAAKRANCSFVLSFPEKWSTQVGTRGLQLSGGQKQRIAIARA 633
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ NP LI DE T+ALD + + + + T I I H L + AD++ V+
Sbjct: 634 LLRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNRSMTTITIAHKLATI-RRADQIIVV 692
Query: 239 YAGKIVEIGTVDQI 252
GK++E G+ +++
Sbjct: 693 GDGKVLEQGSFERL 706
>pir||E70871 hypothetical protein Rv1458c - Mycobacterium tuberculosis (strain
H37RV) >gi|2791392|emb|CAA15988.1| (AL021184)
hypothetical protein Rv1458c [Mycobacterium
tuberculosis]
Length = 313
Score = 72.2 bits (174), Expect = 8e-12
Identities = 60/251 (23%), Positives = 109/251 (42%), Gaps = 31/251 (12%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
PE +L++R + + G + A+ + DV+ E AL+G G GK+ T
Sbjct: 8 PEVVLRLRGVCKRY----GSITAVSNLDLDVHDAEVMALLGPNGAGKTTTVE-------- 55
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIAE 124
+ EG + R D +++L L I + Q GY A
Sbjct: 56 ---MCEG---FVRPDAGSIEVLGLDPITDNARLRARIGVMLQGGG---------GYPAAR 100
Query: 125 AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIGISNNPR 184
A E+ + S +L ++ + + AR LSGG +QR+ + + P+
Sbjct: 101 AGEMLDLVASYAANPLDPHWLLDTLGLTEAARTTYR---RLSGGQQQRLALACALVGRPQ 157
Query: 185 ILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVMYAGKIV 244
++ DEPT +D + + +L++ ++ + TV+L TH+L E ADR+ ++ G V
Sbjct: 158 LVFLDEPTAGMDAHARVLVWELIDALR-RDGVTVVLTTHHLKEAEELADRLVIIDHGVTV 216
Query: 245 EIGTVDQIFKN 255
GT ++ ++
Sbjct: 217 AAGTPAELMRS 227
>gb|AAD43625.1|AF071410_1 (AF071410) ATP-binding cassette multidrug transport protein ATRC
[Aspergillus nidulans]
Length = 1284
Score = 72.2 bits (174), Expect = 8e-12
Identities = 73/257 (28%), Positives = 118/257 (45%), Gaps = 26/257 (10%)
Query: 5 PEPIL---QVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQL 61
PE +L ++ N+T + T GI ++ S V G+ ALVG++G GKS I L
Sbjct: 374 PERVLGDVELENVTFSYPTRPGIT-VLDNFSLKVPAGKVTALVGQSGSGKST----IVGL 428
Query: 62 IESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDPHASLDPLY-TVGY 120
+E G + R DG+++ SE + +R N + + Q+P ++ + Y
Sbjct: 429 LERWYNPTSGAI---RLDGNLI-----SELNVGWLRRN-VRLVQQEPVLFQGSVFDNIRY 479
Query: 121 QIAEAMEVHGKIKSIKEGIQKAVDILK-----SVLIPDPARRVNNYPHELSGGMKQRVVI 175
+ + + E +Q+A + S L + LSGG KQRV I
Sbjct: 480 GLVGTPWENASREEQMERVQEAAKLAYAHEFISELTDGYDTLIGERGGLLSGGQKQRVAI 539
Query: 176 GIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRV 235
+ + P++L+ DE T+ALD + + L+K E T I+I H L + + AD +
Sbjct: 540 ARSVVSQPKVLLLDEATSALDPHAETIVQKALDKAAE--GRTTIVIAHKLATIRK-ADNI 596
Query: 236 AVMYAGKIVEIGTVDQI 252
VM G IVE GT + +
Sbjct: 597 VVMSKGHIVEQGTHESL 613
>pir||H82381 toxin secretion ATP-binding protein VCA1084 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658530|gb|AAF96977.1| (AE004433) toxin secretion
ATP-binding protein [Vibrio cholerae]
Length = 704
Score = 72.2 bits (174), Expect = 8e-12
Identities = 78/275 (28%), Positives = 125/275 (45%), Gaps = 37/275 (13%)
Query: 2 RKVPEPILQ--VRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAIT 59
R + PI+Q + V F+ + ++ +S ++ GE A++G G GK+ R I
Sbjct: 458 RYIHRPIIQGKIELDRVTFHYPNSPIASVRDLSLTIHPGEKVAIIGRIGSGKTTLERLIM 517
Query: 60 QLIESPGRIVEGQVLYYRDDGSVVDLLKLSEEEIRKIRGNEIAYIFQDP---HASLDPLY 116
L + EG V DD D+ +L +IR+ I + QD + S+
Sbjct: 518 GLYKP----TEGHVRI--DD---TDISQLHHIDIRR----NIGCVPQDSVLFYGSIRDNI 564
Query: 117 TVGYQIAEAMEVHGKIKSIKEGIQKAVDILKSVLIPDPA---RRVNNYPHELSGGMKQRV 173
T+G +++ EV + + V + DPA R+V LSGG +Q V
Sbjct: 565 TLGRPLSDDREV------MDAANRAGVTVFTQ---QDPAGLERQVGEGGMLLSGGQRQSV 615
Query: 174 VIGIGISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETAD 233
I P +L+ DEPT+A+D + I L+++K T+ILITH ++ + D
Sbjct: 616 SIARAFLGRPPVLLMDEPTSAMDNRSEMHIKQQLSQLKP--SETLILITHKTSML-DVVD 672
Query: 234 RVAVMYAGKIVEIGTVDQIFKNPLHPYTQGLLRAV 268
RV VM G I+ G ++ L+ QG +RAV
Sbjct: 673 RVIVMEKGCIIADGPKHEV----LNDLRQGNVRAV 703
>emb|CAB39282.1| (AJ133704) NatA protein [Anabaena sp.]
Length = 260
Score = 71.4 bits (172), Expect = 1e-11
Identities = 61/257 (23%), Positives = 118/257 (45%), Gaps = 20/257 (7%)
Query: 5 PEPILQVRNLTVHFYTYAGIVKAIEKVSFDVYKGETFALVGETGCGKSVTSRAITQLIES 64
P P+L L F G +KA+++ +V +G L+G G GK+ ++ I
Sbjct: 8 PLPLLAASGLCKSF----GGIKAVQEARIEVAQGSITGLIGPNGAGKTTLFNLLSNFI-- 61
Query: 65 PGRIVEGQVLYYRDDGSVVDLLKLSE-EEIRKIRGNEIAYIFQDPHASLDPLYTVGYQIA 123
R +G+V++ DG + L+ + + +R ++A + L Q
Sbjct: 62 --RPDKGRVIF---DGEPIQQLQPHQIAQQGMVRTFQVARTLSRLSVLENMLLAAQKQTG 116
Query: 124 E-----AMEVHGKIKSIKEGIQKAVDILKSVLIPDPARRVNNYPHELSGGMKQRVVIGIG 178
E ++ +K K+ ++A+ +L+SV + A++ Y LSGG ++ + +G
Sbjct: 117 ENFWQVQLQPQVVVKEEKQLQEQAMFLLESVGL---AKKAYEYAGGLSGGQRKLLEMGRA 173
Query: 179 ISNNPRILIADEPTTALDVTIQAQILDLLNKMKEKYKATVILITHNLGVVAETADRVAVM 238
+ NP++++ DEP ++ + I D + + T ++I HN+ V+ DRV V+
Sbjct: 174 LMTNPKLILLDEPAAGVNPRLIDDICDRILTWNRQDGMTFLIIEHNMDVIMSLCDRVWVL 233
Query: 239 YAGKIVEIGTVDQIFKN 255
G+ + GT +I N
Sbjct: 234 AEGQNLADGTPAEIQTN 250
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126462248
Number of Sequences: 2977
Number of extensions: 5366348
Number of successful extensions: 22324
Number of sequences better than 1.0e-10: 1239
Number of HSP's better than 0.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 819
Number of HSP's that attempted gapping in prelim test: 19574
Number of HSP's gapped (non-prelim): 1529
length of query: 329
length of database: 189,106,746
effective HSP length: 55
effective length of query: 274
effective length of database: 156,189,961
effective search space: 42796049314
effective search space used: 42796049314
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)