BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1876 (PAB1876) DE:Hypothetical protein
         (131 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75117 hypothetical protein PAB1876 - Pyrococcus abyssi (st...   256  8e-68
pir||H71014 hypothetical protein PH1414 - Pyrococcus horikoshii ...   179  1e-44

>pir||F75117 hypothetical protein PAB1876 - Pyrococcus abyssi (strain Orsay)
           >gi|5458166|emb|CAB49655.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 131
           
 Score =  256 bits (647), Expect = 8e-68
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MMKESMSKFMDATFDYVSWLLVIVVLGLIVVALYKTFYSLISLNLEGTLEEFLFVLILLE 60
           MMKESMSKFMDATFDYVSWLLVIVVLGLIVVALYKTFYSLISLNLEGTLEEFLFVLILLE
Sbjct: 1   MMKESMSKFMDATFDYVSWLLVIVVLGLIVVALYKTFYSLISLNLEGTLEEFLFVLILLE 60

Query: 61  IYELLSLYLRHHHVSMRRVVELGILAIVRKLMVVKDYDSLNPLTLIGLALVIFALGWIYV 120
           IYELLSLYLRHHHVSMRRVVELGILAIVRKLMVVKDYDSLNPLTLIGLALVIFALGWIYV
Sbjct: 61  IYELLSLYLRHHHVSMRRVVELGILAIVRKLMVVKDYDSLNPLTLIGLALVIFALGWIYV 120

Query: 121 NLNLKEGNQQE 131
           NLNLKEGNQQE
Sbjct: 121 NLNLKEGNQQE 131


>pir||H71014 hypothetical protein PH1414 - Pyrococcus horikoshii
           >gi|3257837|dbj|BAA30520.1| (AP000006) 129aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 129
           
 Score =  179 bits (449), Expect = 1e-44
 Identities = 87/131 (66%), Positives = 110/131 (83%), Gaps = 2/131 (1%)

Query: 1   MMKESMSKFMDATFDYVSWLLVIVVLGLIVVALYKTFYSLISLNLEGTLEEFLFVLILLE 60
           M  + +++ +D  FD V WLL I+V+G++ +A++KTF  L+ L+LE TLEEFLF+LILLE
Sbjct: 1   MRGKELTRILDTIFDLVGWLLEIIVIGIMGIAIFKTFQYLMHLDLENTLEEFLFLLILLE 60

Query: 61  IYELLSLYLRHHHVSMRRVVELGILAIVRKLMVVKDYDSLNPLTLIGLALVIFALGWIYV 120
           IYEL+SLYL++HHVSMRRVVELG++AIVRKLM+VKDY+SLNP TLIGL LVI ALGWIYV
Sbjct: 61  IYELISLYLKYHHVSMRRVVELGVIAIVRKLMIVKDYNSLNPFTLIGLGLVIVALGWIYV 120

Query: 121 NLNLKEGNQQE 131
             NL+E  QQE
Sbjct: 121 --NLRESGQQE 129


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.146    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43700993
Number of Sequences: 2977
Number of extensions: 1484011
Number of successful extensions: 7179
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7177
Number of HSP's gapped (non-prelim): 2
length of query: 131
length of database: 189,106,746
effective HSP length: 51
effective length of query: 80
effective length of database: 158,583,909
effective search space: 12686712720
effective search space used: 12686712720
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 161 (67.1 bits)