BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1881 (PAB1881) DE:Hypothetical protein
         (862 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75116 hypothetical protein PAB1881 - Pyrococcus abyssi (st...  1804  0.0

>pir||F75116 hypothetical protein PAB1881 - Pyrococcus abyssi (strain Orsay)
           >gi|5458158|emb|CAB49647.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 862
           
 Score = 1804 bits (4621), Expect = 0.0
 Identities = 862/862 (100%), Positives = 862/862 (100%)

Query: 1   MKSTVSFLRSSRLEEFNLESVIMKKNSVVKLFIAIAVALIVTISGCIGEVEIGKVSPTPE 60
           MKSTVSFLRSSRLEEFNLESVIMKKNSVVKLFIAIAVALIVTISGCIGEVEIGKVSPTPE
Sbjct: 1   MKSTVSFLRSSRLEEFNLESVIMKKNSVVKLFIAIAVALIVTISGCIGEVEIGKVSPTPE 60

Query: 61  ESSQTPIEEKTPQEQEVAESTPSPQPEVKEGEIYDLTHIEYSPESAGLIWISLWIDNPRW 120
           ESSQTPIEEKTPQEQEVAESTPSPQPEVKEGEIYDLTHIEYSPESAGLIWISLWIDNPRW
Sbjct: 61  ESSQTPIEEKTPQEQEVAESTPSPQPEVKEGEIYDLTHIEYSPESAGLIWISLWIDNPRW 120

Query: 121 KSTLPDFISKQPGNVWFYSSGKLFAFEYGDETLYDYVKEGSKGHYPWTIAKLPYDAVGIS 180
           KSTLPDFISKQPGNVWFYSSGKLFAFEYGDETLYDYVKEGSKGHYPWTIAKLPYDAVGIS
Sbjct: 121 KSTLPDFISKQPGNVWFYSSGKLFAFEYGDETLYDYVKEGSKGHYPWTIAKLPYDAVGIS 180

Query: 181 WGGPEGSVVVLDSEGNLHLIVYDNENVEYWPSEENAKFVYLDKVKREFSWKVGGQNLVAG 240
           WGGPEGSVVVLDSEGNLHLIVYDNENVEYWPSEENAKFVYLDKVKREFSWKVGGQNLVAG
Sbjct: 181 WGGPEGSVVVLDSEGNLHLIVYDNENVEYWPSEENAKFVYLDKVKREFSWKVGGQNLVAG 240

Query: 241 WDYDGNHIYYIAWGGNEVWIVSFTGDEIFNLIDGTGKKPTPTKLTFNSQVKDVMIGYHGF 300
           WDYDGNHIYYIAWGGNEVWIVSFTGDEIFNLIDGTGKKPTPTKLTFNSQVKDVMIGYHGF
Sbjct: 241 WDYDGNHIYYIAWGGNEVWIVSFTGDEIFNLIDGTGKKPTPTKLTFNSQVKDVMIGYHGF 300

Query: 301 YVWEGDKLHIFGISTGEESSTIEVPRNGNYYIDIGEGEDVVTIYDGEKAIIVHVSNGEVE 360
           YVWEGDKLHIFGISTGEESSTIEVPRNGNYYIDIGEGEDVVTIYDGEKAIIVHVSNGEVE
Sbjct: 301 YVWEGDKLHIFGISTGEESSTIEVPRNGNYYIDIGEGEDVVTIYDGEKAIIVHVSNGEVE 360

Query: 361 SKEVIKLPGYSFVGYTKTDDYSIIFAFKENKVEFYSYDPSITLVEYEGSLELPAKVEVGK 420
           SKEVIKLPGYSFVGYTKTDDYSIIFAFKENKVEFYSYDPSITLVEYEGSLELPAKVEVGK
Sbjct: 361 SKEVIKLPGYSFVGYTKTDDYSIIFAFKENKVEFYSYDPSITLVEYEGSLELPAKVEVGK 420

Query: 421 GEYFKGKGVGYIYFWGADGKYYIVVGSIVKETTGESAETEVRETQTSTQGDTESEIEVIL 480
           GEYFKGKGVGYIYFWGADGKYYIVVGSIVKETTGESAETEVRETQTSTQGDTESEIEVIL
Sbjct: 421 GEYFKGKGVGYIYFWGADGKYYIVVGSIVKETTGESAETEVRETQTSTQGDTESEIEVIL 480

Query: 481 SNFNIEYTRIGELWGAKVHLKKAPDYKNINDWLQIRAYEPAGLPGLYLAYGNYLVEITSG 540
           SNFNIEYTRIGELWGAKVHLKKAPDYKNINDWLQIRAYEPAGLPGLYLAYGNYLVEITSG
Sbjct: 481 SNFNIEYTRIGELWGAKVHLKKAPDYKNINDWLQIRAYEPAGLPGLYLAYGNYLVEITSG 540

Query: 541 LKTIVEKKEPLNNYKVLRYIYVLPTTPRDFTIGFYSSYNIFMAGKDGRLYLLYDHSLNEY 600
           LKTIVEKKEPLNNYKVLRYIYVLPTTPRDFTIGFYSSYNIFMAGKDGRLYLLYDHSLNEY
Sbjct: 541 LKTIVEKKEPLNNYKVLRYIYVLPTTPRDFTIGFYSSYNIFMAGKDGRLYLLYDHSLNEY 600

Query: 601 EDGVKYVTYGKYLSWDIDADGVNYMRGYRDSNLHLLAWKDNRAYILTYTSDQFFEAEKKG 660
           EDGVKYVTYGKYLSWDIDADGVNYMRGYRDSNLHLLAWKDNRAYILTYTSDQFFEAEKKG
Sbjct: 601 EDGVKYVTYGKYLSWDIDADGVNYMRGYRDSNLHLLAWKDNRAYILTYTSDQFFEAEKKG 660

Query: 661 LPKVEPVVLTLPERIVAIYDIGRGRALIRTEGGIYLYDIGGYYGYGPDKLYTLLENFPGK 720
           LPKVEPVVLTLPERIVAIYDIGRGRALIRTEGGIYLYDIGGYYGYGPDKLYTLLENFPGK
Sbjct: 661 LPKVEPVVLTLPERIVAIYDIGRGRALIRTEGGIYLYDIGGYYGYGPDKLYTLLENFPGK 720

Query: 721 AVFLSHERELVIYNKNKFYWVRVSSKYDANDKNVPVVKVIPSDSSIQGVVAFSPMYNTYN 780
           AVFLSHERELVIYNKNKFYWVRVSSKYDANDKNVPVVKVIPSDSSIQGVVAFSPMYNTYN
Sbjct: 721 AVFLSHERELVIYNKNKFYWVRVSSKYDANDKNVPVVKVIPSDSSIQGVVAFSPMYNTYN 780

Query: 781 FQLAVGFEKRIALYNVSFYYDDQGNRHFKLIPDISFEVPFTPELVYGEDECYCHVHFHEQ 840
           FQLAVGFEKRIALYNVSFYYDDQGNRHFKLIPDISFEVPFTPELVYGEDECYCHVHFHEQ
Sbjct: 781 FQLAVGFEKRIALYNVSFYYDDQGNRHFKLIPDISFEVPFTPELVYGEDECYCHVHFHEQ 840

Query: 841 YFYVWAGNDYYVLFGPNHGPTK 862
           YFYVWAGNDYYVLFGPNHGPTK
Sbjct: 841 YFYVWAGNDYYVLFGPNHGPTK 862


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.139    0.424 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378237132
Number of Sequences: 2977
Number of extensions: 18770286
Number of successful extensions: 47593
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47588
Number of HSP's gapped (non-prelim): 1
length of query: 862
length of database: 189,106,746
effective HSP length: 55
effective length of query: 807
effective length of database: 156,189,961
effective search space: 126045298527
effective search space used: 126045298527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 169 (70.2 bits)