BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1882 686158 685604 -185 !not a gene!
         (185 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A72741 hypothetical protein APE0458 - Aeropyrum pernix (str...    71  1e-11

>pir||A72741 hypothetical protein APE0458 - Aeropyrum pernix (strain K1)
           >gi|5104105|dbj|BAA79421.1| (AP000059) 160aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 160
           
 Score = 70.6 bits (170), Expect = 1e-11
 Identities = 48/149 (32%), Positives = 62/149 (41%), Gaps = 3/149 (2%)

Query: 39  PQPRSANPLFNASTTISFLSLVAYSFVFLSLTNSTPHANPSPLT--XXXXXXXXXXXXXX 96
           P P +  PL    ++    + +  S VF SLT+STP  +P PLT                
Sbjct: 13  PAPITRRPLLKDLSSTQARASLWGSLVFSSLTSSTPIISPLPLTWPTILSSSAASPSIFS 72

Query: 97  XXXXXXXXWAFSIRPFWXXXXXXXXXXXXXXFPPKVLLWTPLTPKSRSALNIVAPIGIPP 156
                    + S+ P                 PPKVL W P      S L   AP G PP
Sbjct: 73  AFSPSLCDLSHSLSPS-ITSITALKAARATGLPPKVLAWLPRGRLITSLLPTAAPSGSPP 131

Query: 157 PKAFATVIMSGTTSKCSIAHILPVLPIPI 185
           P A A  + SG+T +CS A+ILPVL  P+
Sbjct: 132 PMALARAMTSGSTPQCSTANILPVLAKPV 160


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.136    0.433 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51937598
Number of Sequences: 2977
Number of extensions: 1568056
Number of successful extensions: 4495
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4494
Number of HSP's gapped (non-prelim): 1
length of query: 185
length of database: 189,106,746
effective HSP length: 50
effective length of query: 135
effective length of database: 159,182,396
effective search space: 21489623460
effective search space used: 21489623460
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)